inra.ijpb.morphology.geodrec

Class GeodesicReconstructionByDilation3DScanning

java.lang.Object

inra.ijpb.algo.AlgoStub

inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgoStub

inra.ijpb.morphology.geodrec.GeodesicReconstructionByDilation3DScanning

All Implemented Interfaces:

Algo, GeodesicReconstruction3DAlgo

public class GeodesicReconstructionByDilation3DScanning
extends GeodesicReconstruction3DAlgoStub

Geodesic reconstruction by dilation for 3D stacks using scanning algorithm, and Image3D access class.

This version uses iterations of forward and backward passes until no more modifications are made. It is intended to work on any type of scalar 3D, images, using 6 or 26 adjacencies.

Uses specialized class to access the values in 3D image stacks, by avoiding to check bounds at each access. For byte stack, the class GeodesicReconstructionByDilation3DScanningGray8 may be faster.

Author:

David Legland

See Also:

Image3D

Field Summary

Fields inherited from class inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgoStub

connectivity, showProgress, showStatus, verbose

Constructor Summary

Constructors

Constructor and Description
GeodesicReconstructionByDilation3DScanning() Creates a new instance of geodesic reconstruction by dilation algorithm, using the default connectivity 6.
GeodesicReconstructionByDilation3DScanning(int connectivity) Creates a new instance of geodesic reconstruction by dilation algorithm, that specifies the connectivity to use.

Method Summary

Modifier and Type	Method and Description
ij.ImageStack	applyTo(ij.ImageStack marker, ij.ImageStack mask) Run the reconstruction by dilation algorithm using the images specified as argument.
ij.ImageStack	applyTo(ij.ImageStack marker, ij.ImageStack mask, ij.ImageStack binaryMask) Run the reconstruction by dilation algorithm using the images specified as argument.

Methods inherited from class inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgoStub

getConnectivity, setConnectivity, showProgress, showProgress, showStatus, trace

Methods inherited from class inra.ijpb.algo.AlgoStub

addAlgoListener, fireProgressChanged, fireProgressChanged, fireStatusChanged, fireStatusChanged, removeAlgoListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface inra.ijpb.algo.Algo

addAlgoListener, removeAlgoListener

Constructor Detail

GeodesicReconstructionByDilation3DScanning

public GeodesicReconstructionByDilation3DScanning()

Creates a new instance of geodesic reconstruction by dilation algorithm, using the default connectivity 6.

GeodesicReconstructionByDilation3DScanning

public GeodesicReconstructionByDilation3DScanning(int connectivity)

Creates a new instance of geodesic reconstruction by dilation algorithm, that specifies the connectivity to use.

Parameters:

connectivity - the 3D connectivity to use (either 6 or 26)

Method Detail

applyTo

public ij.ImageStack applyTo(ij.ImageStack marker,
                             ij.ImageStack mask)

Run the reconstruction by dilation algorithm using the images specified as argument.

Parameters:

marker - the image used as marker for reconstruction

mask - the image used to constrain the reconstruction

Returns:

the result of geodesic reconstruction

applyTo

public ij.ImageStack applyTo(ij.ImageStack marker,
                             ij.ImageStack mask,
                             ij.ImageStack binaryMask)

Run the reconstruction by dilation algorithm using the images specified as argument.

Parameters:

marker - the image used as marker for reconstruction

mask - the image used to constrain the reconstruction

binaryMask - the region of intersect for processing input images

Returns:

the result of geodesic reconstruction