inra.ijpb.morphology.geodrec

Class GeodesicReconstructionByDilation3D

java.lang.Object

inra.ijpb.algo.AlgoStub

inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgoStub

inra.ijpb.morphology.geodrec.GeodesicReconstructionByDilation3D

All Implemented Interfaces:

Algo, GeodesicReconstruction3DAlgo

public class GeodesicReconstructionByDilation3D
extends GeodesicReconstruction3DAlgoStub

Geodesic reconstruction by dilation for 3D images of any type, using scanning algorithm and implemented only for C26 connectivity.

Author:

David Legland

Field Summary

Fields inherited from class inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgoStub

connectivity, showProgress, showStatus, verbose

Constructor Summary

Constructors

Constructor and Description
GeodesicReconstructionByDilation3D() Creates a new instance of geodesic reconstruction by dilation algorithm, using the default connectivity 6.
GeodesicReconstructionByDilation3D(int connectivity) Creates a new instance of geodesic reconstruction by dilation algorithm, that specifies the connectivity to use.

Method Summary

Modifier and Type	Method and Description
ij.ImageStack	applyTo(ij.ImageStack marker, ij.ImageStack mask) Run the reconstruction by dilation algorithm using the images specified as argument.
ij.ImageStack	applyTo(ij.ImageStack marker, ij.ImageStack mask, ij.ImageStack binaryMask) Applies the geodesic reconstruction algorithm to the input marker and mask images, restricted by a binary mask.

Methods inherited from class inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgoStub

getConnectivity, setConnectivity, showProgress, showProgress, showStatus, trace

Methods inherited from class inra.ijpb.algo.AlgoStub

addAlgoListener, fireProgressChanged, fireProgressChanged, fireStatusChanged, fireStatusChanged, removeAlgoListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface inra.ijpb.algo.Algo

addAlgoListener, removeAlgoListener

Constructor Detail

GeodesicReconstructionByDilation3D

public GeodesicReconstructionByDilation3D()

Creates a new instance of geodesic reconstruction by dilation algorithm, using the default connectivity 6.

GeodesicReconstructionByDilation3D

public GeodesicReconstructionByDilation3D(int connectivity)

Creates a new instance of geodesic reconstruction by dilation algorithm, that specifies the connectivity to use.

Parameters:

connectivity - the 3D connectivity to use (either 6 or 26)

Method Detail

applyTo

public ij.ImageStack applyTo(ij.ImageStack marker,
                             ij.ImageStack mask)

Run the reconstruction by dilation algorithm using the images specified as argument.

Parameters:

marker - image used to initialize the reconstruction

mask - image used to constrain the reconstruction

Returns:

the geodesic reconstruction of marker image constrained by mask image

applyTo

public ij.ImageStack applyTo(ij.ImageStack marker,
                             ij.ImageStack mask,
                             ij.ImageStack binaryMask)

Description copied from interface: GeodesicReconstruction3DAlgo

Applies the geodesic reconstruction algorithm to the input marker and mask images, restricted by a binary mask.

Parameters:

marker - image used to initialize the reconstruction

mask - image used to constrain the reconstruction

binaryMask - binary mask to restrict the region of application

Returns:

the geodesic reconstruction of marker image constrained by mask image