inra.ijpb.plugins

Class LabelToValuePlugin

java.lang.Object

inra.ijpb.plugins.LabelToValuePlugin

All Implemented Interfaces:

ij.gui.DialogListener, ij.plugin.PlugIn

public class LabelToValuePlugin
extends Object
implements ij.plugin.PlugIn, ij.gui.DialogListener

Combines a label image and the values within a column of a results table to create a new image with intensity corresponding to the vales in the table column.

Author:

dlegland

Constructor Summary

Constructors

Constructor and Description
LabelToValuePlugin()

Method Summary

Modifier and Type	Method and Description
boolean	dialogItemChanged(ij.gui.GenericDialog gd, AWTEvent evt)
static ij.ImagePlus	process(ij.ImagePlus labelImage, ij.measure.ResultsTable table, String columnName) Combines a label image and the values within a column of a ResultsTable to generate a parametric map of values that associates to each pixel / voxel the value of the row associated to the label it belongs to.
static ij.ImagePlus	process(ij.ImagePlus labelImage, ij.measure.ResultsTable table, String columnName, double minValue, double maxValue) Combines a label image and the values within a column of a ResultsTable to generate a parametric map of values that associates to each pixel / voxel the value of the row associated to the label it belongs to.
static void	process(String tableNameArg, String columnNameArg, String minValueArg, String maxValueArg) Process the current image as a label image using the provided string arguments.
static void	record(String command, String... args) Macro-record a specific command.
void	run(String arg0)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LabelToValuePlugin

public LabelToValuePlugin()

Method Detail

run

public void run(String arg0)

Specified by:

run in interface ij.plugin.PlugIn

dialogItemChanged

public boolean dialogItemChanged(ij.gui.GenericDialog gd,
                                 AWTEvent evt)

Specified by:

dialogItemChanged in interface ij.gui.DialogListener

process

public static final ij.ImagePlus process(ij.ImagePlus labelImage,
                                         ij.measure.ResultsTable table,
                                         String columnName)

Combines a label image and the values within a column of a ResultsTable to generate a parametric map of values that associates to each pixel / voxel the value of the row associated to the label it belongs to. Background pixels are associated to the value Float.NaN.

Parameters:

labelImage - the image containing the regions labels

table - the ResultsTable containing the values to map

columnName - the name of the column containing the values to map (one row per label)

Returns:

a new 32-bit float image containing the values associated to each label

process

public static final ij.ImagePlus process(ij.ImagePlus labelImage,
                                         ij.measure.ResultsTable table,
                                         String columnName,
                                         double minValue,
                                         double maxValue)

Combines a label image and the values within a column of a ResultsTable to generate a parametric map of values that associates to each pixel / voxel the value of the row associated to the label it belongs to. Background pixels are associated to the value Float.NaN.

Parameters:

labelImage - the image containing the regions labels

table - the ResultsTable containing the values to map

columnName - the name of the column containing the values to map (one row per label)

minValue - the value that will be displayed in black

maxValue - the value that will be displayed in white

Returns:

a new 32-bit float image containing the values associated to each label

record

public static final void record(String command,
                                String... args)

Macro-record a specific command. The command names match the static methods that reproduce that part of the code.

Parameters:

command - name of the command including package info

args - set of arguments for the command

process

public static final void process(String tableNameArg,
                                 String columnNameArg,
                                 String minValueArg,
                                 String maxValueArg)

Process the current image as a label image using the provided string arguments. This method is intended to be called from macro, using the command line generated by the "record" method.

Parameters:

tableNameArg - the name of the result table to use

columnNameArg - the name of the column (within the table) containing the values

minValueArg - the minimal value to display as black in result image

maxValueArg - the maximal value to display as white in result image

See Also:

record(String, String...), process(ImagePlus, ResultsTable, String, double, double)