inra.ijpb.morphology.strel

Class AbstractInPlaceStrel

java.lang.Object

inra.ijpb.algo.AlgoStub

inra.ijpb.morphology.strel.AbstractStrel3D

inra.ijpb.morphology.strel.AbstractStrel

inra.ijpb.morphology.strel.AbstractInPlaceStrel

All Implemented Interfaces:

Algo, Strel, InPlaceStrel, InPlaceStrel3D, Strel3D

Direct Known Subclasses:

Cross3x3Strel, DiskStrel, LinearDiagDownStrel, LinearDiagUpStrel, LinearHorizontalStrel, LinearVerticalStrel

public abstract class AbstractInPlaceStrel
extends AbstractStrel
implements InPlaceStrel

Implementation stub for in place Structuring elements. Implements operations methods by calling in-place versions.

Author:

David Legland

Nested Class Summary

Nested classes/interfaces inherited from interface inra.ijpb.morphology.Strel

Strel.Shape

Field Summary

Fields inherited from interface inra.ijpb.morphology.Strel

BACKGROUND, FOREGROUND

Constructor Summary

Constructors

Constructor and Description
AbstractInPlaceStrel()

Method Summary

Modifier and Type	Method and Description
ij.process.ImageProcessor	closing(ij.process.ImageProcessor image) Performs a morphological closing on the input image, by applying first a dilation, then an erosion with the reversed structuring element.
ij.ImageStack	closing(ij.ImageStack stack) Performs a morphological closing on the input stack, by applying first a dilation, then an erosion with the reversed structuring element.
ij.process.ImageProcessor	dilation(ij.process.ImageProcessor image) Implements a default algorithm for dilation, that consists in iterating over the neighbors of each pixel to compute the maximum value.
ij.ImageStack	dilation(ij.ImageStack stack) Implements a default algorithm for dilation, that consists in iterating over the neighbors of each pixel to compute the maximum value.
ij.process.ImageProcessor	erosion(ij.process.ImageProcessor image) Implements a default algorithm for erosion, that consists in iterating over the neighbors of each pixel to compute the minimum value.
ij.ImageStack	erosion(ij.ImageStack stack) Implements a default algorithm for erosion, that consists in iterating over the neighbors of each pixel to compute the minimum value.
void	inPlaceDilation(ij.ImageStack stack) Performs dilation of the stack given as argument, and stores the result in the same image.
void	inPlaceErosion(ij.ImageStack stack) Performs erosion of the image given as argument, and stores the result in the same image.
ij.process.ImageProcessor	opening(ij.process.ImageProcessor image) Performs a morphological opening on the input image, by applying first an erosion, then a dilation with the reversed structuring element.
ij.ImageStack	opening(ij.ImageStack stack) Performs a morphological opening on the input stack, by applying first an erosion, then a dilation with the reversed structuring element.

Methods inherited from class inra.ijpb.morphology.strel.AbstractStrel

addBorder, convertMaskToShifts, cropBorder, getChannelName, getMask3D, getShifts3D, setChannelName

Methods inherited from class inra.ijpb.morphology.strel.AbstractStrel3D

addBorder, convertMaskToShifts, cropBorder, fireProgressChanged, fireProgressChanged, fireStatusChanged, fireStatusChanged, showProgress, showProgress

Methods inherited from class inra.ijpb.algo.AlgoStub

addAlgoListener, removeAlgoListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface inra.ijpb.morphology.strel.InPlaceStrel

inPlaceDilation, inPlaceErosion, reverse

Methods inherited from interface inra.ijpb.morphology.Strel

getChannelName, getMask, getOffset, getShifts, getSize, setChannelName

Methods inherited from interface inra.ijpb.morphology.Strel3D

getMask3D, getShifts3D, showProgress, showProgress

Methods inherited from interface inra.ijpb.algo.Algo

addAlgoListener, removeAlgoListener

Constructor Detail

AbstractInPlaceStrel

public AbstractInPlaceStrel()

Method Detail

dilation

public ij.ImageStack dilation(ij.ImageStack stack)

Description copied from class: AbstractStrel3D

Implements a default algorithm for dilation, that consists in iterating over the neighbors of each pixel to compute the maximum value. The neighbors are obtained via the getShifts() method.

Specified by:

dilation in interface Strel3D

Overrides:

dilation in class AbstractStrel

Parameters:

stack - the input image

Returns:

the result of dilation with this structuring element

See Also:

Strel3D.getShifts3D(), AbstractStrel3D.erosion(ImageStack)

erosion

public ij.ImageStack erosion(ij.ImageStack stack)

Description copied from class: AbstractStrel3D

Implements a default algorithm for erosion, that consists in iterating over the neighbors of each pixel to compute the minimum value. The neighbors are obtained via the getShifts() method.

Specified by:

erosion in interface Strel3D

Overrides:

erosion in class AbstractStrel

Parameters:

stack - the input image

Returns:

the result of erosion with this structuring element

See Also:

Strel3D.getShifts3D(), AbstractStrel3D.dilation(ImageStack)

closing

public ij.ImageStack closing(ij.ImageStack stack)

Description copied from class: AbstractStrel3D

Performs a morphological closing on the input stack, by applying first a dilation, then an erosion with the reversed structuring element.

Specified by:

closing in interface Strel3D

Overrides:

closing in class AbstractStrel

Parameters:

stack - the input image

Returns:

the result of closing with this structuring element

See Also:

AbstractStrel3D.dilation(ImageStack), AbstractStrel3D.erosion(ImageStack), AbstractStrel3D.opening(ImageStack), Strel3D.reverse()

opening

public ij.ImageStack opening(ij.ImageStack stack)

Description copied from class: AbstractStrel3D

Performs a morphological opening on the input stack, by applying first an erosion, then a dilation with the reversed structuring element.

Specified by:

opening in interface Strel3D

Overrides:

opening in class AbstractStrel

Parameters:

stack - the input image

Returns:

the result of closing with this structuring element

See Also:

AbstractStrel3D.dilation(ImageStack), AbstractStrel3D.erosion(ImageStack), AbstractStrel3D.closing(ImageStack), Strel3D.reverse()

inPlaceDilation

public void inPlaceDilation(ij.ImageStack stack)

Description copied from interface: InPlaceStrel3D

Performs dilation of the stack given as argument, and stores the result in the same image.

Specified by:

inPlaceDilation in interface InPlaceStrel3D

Parameters:

stack - the input image stack to dilate

inPlaceErosion

public void inPlaceErosion(ij.ImageStack stack)

Description copied from interface: InPlaceStrel3D

Performs erosion of the image given as argument, and stores the result in the same image.

Specified by:

inPlaceErosion in interface InPlaceStrel3D

Parameters:

stack - the input image stack to erode

dilation

public ij.process.ImageProcessor dilation(ij.process.ImageProcessor image)

Description copied from class: AbstractStrel

Implements a default algorithm for dilation, that consists in iterating over the neighbors of each pixel to compute the maximum value. The neighbors are obtained via the getShifts() method.

Specified by:

dilation in interface Strel

Overrides:

dilation in class AbstractStrel

Parameters:

image - the input image

Returns:

the result of dilation with this structuring element

See Also:

Strel.getShifts(), AbstractStrel.erosion(ImageProcessor)

erosion

public ij.process.ImageProcessor erosion(ij.process.ImageProcessor image)

Description copied from class: AbstractStrel

Implements a default algorithm for erosion, that consists in iterating over the neighbors of each pixel to compute the minimum value. The neighbors are obtained via the getShifts() method.

Specified by:

erosion in interface Strel

Overrides:

erosion in class AbstractStrel

Parameters:

image - the input image

Returns:

the result of erosion with this structuring element

See Also:

Strel.getShifts(), AbstractStrel.dilation(ImageProcessor)

closing

public ij.process.ImageProcessor closing(ij.process.ImageProcessor image)

Description copied from class: AbstractStrel

Performs a morphological closing on the input image, by applying first a dilation, then an erosion with the reversed structuring element.

Specified by:

closing in interface Strel

Overrides:

closing in class AbstractStrel

Parameters:

image - the input image

Returns:

the result of closing with this structuring element

See Also:

AbstractStrel.dilation(ij.process.ImageProcessor), AbstractStrel.erosion(ij.process.ImageProcessor), AbstractStrel.opening(ij.process.ImageProcessor), Strel3D.reverse()

opening

public ij.process.ImageProcessor opening(ij.process.ImageProcessor image)

Description copied from class: AbstractStrel

Performs a morphological opening on the input image, by applying first an erosion, then a dilation with the reversed structuring element.

Specified by:

opening in interface Strel

Overrides:

opening in class AbstractStrel

Parameters:

image - the input image

Returns:

the result of opening with this structuring element

See Also:

AbstractStrel.dilation(ij.process.ImageProcessor), AbstractStrel.erosion(ij.process.ImageProcessor), AbstractStrel.closing(ij.process.ImageProcessor), Strel3D.reverse()