inra.ijpb.measure.region3d

Class MaxFeretDiameter3D

java.lang.Object

inra.ijpb.algo.AlgoStub

inra.ijpb.measure.region3d.RegionAnalyzer3D<PointPair3D>

inra.ijpb.measure.region3d.MaxFeretDiameter3D

All Implemented Interfaces:

Algo, AlgoListener, RegionAnalyzer<PointPair3D>

public class MaxFeretDiameter3D
extends RegionAnalyzer3D<PointPair3D>

Computes maximum Feret Diameter for each region of a 3D binary or label image.

Author:

dlegland

See Also:

MaxFeretDiameter

Constructor Summary

Constructors

Constructor and Description
MaxFeretDiameter3D() Default constructor

Method Summary

Modifier and Type	Method and Description
PointPair3D[]	analyzeRegions(ij.ImageStack image, int[] labels, ij.measure.Calibration calib) Computes maximum Feret Diameter for each label of the input label image.
ij.measure.ResultsTable	createTable(Map<Integer,PointPair3D> maxDiamsMap) Converts the result of maximum Feret diameters computation to a ResultsTable that can be displayed within ImageJ.
static PointPair3D	maxFeretDiameter(ArrayList<? extends Point3D> points) Computes Maximum Feret diameter of a set of points.
static PointPair3D[]	maxFeretDiameters(ij.ImageStack image, int[] labels, ij.measure.Calibration calib) Computes Feret diameters as a PointPair3D for each of the specified regions within a label map.

Methods inherited from class inra.ijpb.measure.region3d.RegionAnalyzer3D

algoProgressChanged, algoStatusChanged, analyzeRegions, analyzeRegions, computeTable, createMap

Methods inherited from class inra.ijpb.algo.AlgoStub

addAlgoListener, fireProgressChanged, fireProgressChanged, fireStatusChanged, fireStatusChanged, removeAlgoListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MaxFeretDiameter3D

public MaxFeretDiameter3D()

Default constructor

Method Detail

maxFeretDiameters

public static final PointPair3D[] maxFeretDiameters(ij.ImageStack image,
                                                    int[] labels,
                                                    ij.measure.Calibration calib)

Computes Feret diameters as a PointPair3D for each of the specified regions within a label map.

Parameters:

image - the 3D label map corresponding to the label image

labels - the array of region labels to process

calib - the spatial calibration of the image

Returns:

the array of 3D Feret diameter results

maxFeretDiameter

public static final PointPair3D maxFeretDiameter(ArrayList<? extends Point3D> points)

Computes Maximum Feret diameter of a set of points. Note: it is often a good idea to compute convex hull before computing Feret diameter.

Parameters:

points - a collection of planar points

Returns:

the maximum Feret diameter of the point set

createTable

public ij.measure.ResultsTable createTable(Map<Integer,PointPair3D> maxDiamsMap)

Converts the result of maximum Feret diameters computation to a ResultsTable that can be displayed within ImageJ.

Parameters:

maxDiamsMap - the map of PointPair3D for each label within a label image

Returns:

a ResultsTable instance

analyzeRegions

public PointPair3D[] analyzeRegions(ij.ImageStack image,
                                    int[] labels,
                                    ij.measure.Calibration calib)

Computes maximum Feret Diameter for each label of the input label image. Computes diameter between corners of image pixels, so the result is always greater than or equal to one.

Specified by:

analyzeRegions in class RegionAnalyzer3D<PointPair3D>

Parameters:

image - a label image (8, 16 or 32 bits)

labels - the set of labels within the image

calib - the spatial calibration of the image

Returns:

an array of PointPair3D representing the coordinates of extreme points, in calibrated coordinates.