inra.ijpb.measure.region3d

Class LargestInscribedBall

java.lang.Object

inra.ijpb.algo.AlgoStub

inra.ijpb.measure.region3d.RegionAnalyzer3D<Sphere>

inra.ijpb.measure.region3d.LargestInscribedBall

All Implemented Interfaces:

Algo, AlgoListener, RegionAnalyzer<Sphere>

public class LargestInscribedBall
extends RegionAnalyzer3D<Sphere>

Computes the largest inscribed ball for each region of a label or binary image.

Author:

dlegland

See Also:

LargestInscribedCircle

Constructor Summary

Constructors

Constructor and Description
LargestInscribedBall() Empty constructor.

Method Summary

Modifier and Type	Method and Description
Sphere[]	analyzeRegions(ij.ImageStack labelImage, int[] labels, ij.measure.Calibration calib) Computes largest inscribed ball of each region with a 3D label image.
ij.measure.ResultsTable	createTable(Map<Integer,Sphere> map) Utility method that transforms the mapping between labels and inscribed ball instances into a ResultsTable that can be displayed with ImageJ.
static Sphere[]	largestInscribedBalls(ij.ImageStack labelImage, int[] labels, ij.measure.Calibration calib) Computes largest inscribed ball of each region with a 3D label image.

Methods inherited from class inra.ijpb.measure.region3d.RegionAnalyzer3D

algoProgressChanged, algoStatusChanged, analyzeRegions, analyzeRegions, computeTable, createMap

Methods inherited from class inra.ijpb.algo.AlgoStub

addAlgoListener, fireProgressChanged, fireProgressChanged, fireStatusChanged, fireStatusChanged, removeAlgoListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LargestInscribedBall

public LargestInscribedBall()

Empty constructor.

Method Detail

largestInscribedBalls

public static final Sphere[] largestInscribedBalls(ij.ImageStack labelImage,
                                                   int[] labels,
                                                   ij.measure.Calibration calib)

Computes largest inscribed ball of each region with a 3D label image. The regions must be disjoint.

Parameters:

labelImage - the 3D input image containing label of particles

labels - the set of labels within the image

calib - the spatial calibration of the image

Returns:

an array of Sphere representing the inscribed balls of each region, in calibrated coordinates

createTable

public ij.measure.ResultsTable createTable(Map<Integer,Sphere> map)

Utility method that transforms the mapping between labels and inscribed ball instances into a ResultsTable that can be displayed with ImageJ.

Parameters:

map - the mapping between labels and inscribed ball

Returns:

a ResultsTable that can be displayed with ImageJ.

analyzeRegions

public Sphere[] analyzeRegions(ij.ImageStack labelImage,
                               int[] labels,
                               ij.measure.Calibration calib)

Computes largest inscribed ball of each region with a 3D label image. The regions must be disjoint.

Specified by:

analyzeRegions in class RegionAnalyzer3D<Sphere>

Parameters:

labelImage - the 3D input image containing label of particles

labels - the set of labels within the image

calib - the spatial calibration of the image

Returns:

an array of Sphere representing the inscribed balls of each region, in calibrated coordinates