inra.ijpb.binary.geodesic

Class GeodesicDistanceTransform3DFloat

java.lang.Object

inra.ijpb.algo.AlgoStub

inra.ijpb.binary.geodesic.GeodesicDistanceTransform3DFloat

All Implemented Interfaces:

Algo, GeodesicDistanceTransform3D

public class GeodesicDistanceTransform3DFloat
extends AlgoStub
implements GeodesicDistanceTransform3D

Computation of geodesic distance transform for 3D images, using floating point computation. Adapted for the management of label images.

Author:

dlegland

Constructor Summary

Constructors

Constructor and Description
GeodesicDistanceTransform3DFloat(ChamferMask3D mask, boolean normalizeMap) Creates a new algorithm for propagating geodesic distances.
GeodesicDistanceTransform3DFloat(ChamferWeights3D weights, boolean normalizeMap) Deprecated.
GeodesicDistanceTransform3DFloat(float[] weights) Deprecated.
GeodesicDistanceTransform3DFloat(float[] weights, boolean normalizeMap) Deprecated.

Method Summary

Modifier and Type	Method and Description
ij.ImageStack	geodesicDistanceMap(ij.ImageStack marker, ij.ImageStack mask) Computes 3D geodesic distance transform (or geodesic distance map) of a binary image of marker, constrained to a binary mask.

Methods inherited from class inra.ijpb.algo.AlgoStub

addAlgoListener, fireProgressChanged, fireProgressChanged, fireStatusChanged, fireStatusChanged, removeAlgoListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface inra.ijpb.algo.Algo

addAlgoListener, removeAlgoListener

Constructor Detail

GeodesicDistanceTransform3DFloat

public GeodesicDistanceTransform3DFloat(ChamferMask3D mask,
                                        boolean normalizeMap)

Creates a new algorithm for propagating geodesic distances.

Parameters:

mask - the chamfer mask to use for propagating distances

normalizeMap - the flag for normalization

GeodesicDistanceTransform3DFloat

@Deprecated
public GeodesicDistanceTransform3DFloat(float[] weights)

Deprecated.

Creates a new algorithm.

Parameters:

weights - the weights to use for propagating distances

GeodesicDistanceTransform3DFloat

@Deprecated
public GeodesicDistanceTransform3DFloat(float[] weights,
                                                    boolean normalizeMap)

Deprecated.

Creates a new algorithm.

Parameters:

weights - the weights to use for propagating distances

normalizeMap - the flag for normalization

GeodesicDistanceTransform3DFloat

@Deprecated
public GeodesicDistanceTransform3DFloat(ChamferWeights3D weights,
                                                    boolean normalizeMap)

Deprecated.

Creates a new algorithm for propagating geodesic distances.

Parameters:

weights - the chamfer mask to use for propagating distances

normalizeMap - the flag for normalization

Method Detail

geodesicDistanceMap

public ij.ImageStack geodesicDistanceMap(ij.ImageStack marker,
                                         ij.ImageStack mask)

Description copied from interface: GeodesicDistanceTransform3D

Computes 3D geodesic distance transform (or geodesic distance map) of a binary image of marker, constrained to a binary mask.

Specified by:

geodesicDistanceMap in interface GeodesicDistanceTransform3D

Parameters:

marker - the binary image of marker

mask - the binary image of mask

Returns:

the geodesic distance map in a new ImageProcessor