inra.ijpb.morphology.geodrec

Interface GeodesicReconstruction3DAlgo

All Superinterfaces:

Algo

All Known Implementing Classes:

GeodesicReconstruction3DAlgoStub, GeodesicReconstruction3DHybrid0Float, GeodesicReconstruction3DHybrid0Gray16, GeodesicReconstruction3DHybrid0Gray8, GeodesicReconstruction3DHybrid1Image3D, GeodesicReconstructionByDilation3D, GeodesicReconstructionByDilation3DGray8, GeodesicReconstructionByDilation3DScanning, GeodesicReconstructionByDilation3DScanningGray8, GeodesicReconstructionByErosion3DGray8, GeodesicReconstructionByErosion3DScanning, GeodesicReconstructionByErosion3DScanningGray8

public interface GeodesicReconstruction3DAlgo
extends Algo

Defines the interface for geodesic reconstruction algorithms applied to 3D stack images.

Author:

David Legland

Method Summary

Modifier and Type	Method and Description
ij.ImageStack	applyTo(ij.ImageStack marker, ij.ImageStack mask) Applies the geodesic reconstruction algorithm to the input marker and mask images.
ij.ImageStack	applyTo(ij.ImageStack marker, ij.ImageStack mask, ij.ImageStack binaryMask) Applies the geodesic reconstruction algorithm to the input marker and mask images, restricted by a binary mask.
int	getConnectivity() Returns the chosen connectivity of the algorithm, either 6 or 26.
void	setConnectivity(int conn) Changes the connectivity of the algorithm to either 6 or 26.

Methods inherited from interface inra.ijpb.algo.Algo

addAlgoListener, removeAlgoListener

Method Detail

applyTo

ij.ImageStack applyTo(ij.ImageStack marker,
                      ij.ImageStack mask)

Applies the geodesic reconstruction algorithm to the input marker and mask images.

Parameters:

marker - image used to initialize the reconstruction

mask - image used to constrain the reconstruction

Returns:

the geodesic reconstruction of marker image constrained by mask image

applyTo

ij.ImageStack applyTo(ij.ImageStack marker,
                      ij.ImageStack mask,
                      ij.ImageStack binaryMask)

Applies the geodesic reconstruction algorithm to the input marker and mask images, restricted by a binary mask.

Parameters:

marker - image used to initialize the reconstruction

mask - image used to constrain the reconstruction

binaryMask - binary mask to restrict the region of application

Returns:

the geodesic reconstruction of marker image constrained by mask image

getConnectivity

int getConnectivity()

Returns the chosen connectivity of the algorithm, either 6 or 26.

Returns:

the current connectivity for this algorithm

setConnectivity

void setConnectivity(int conn)

Changes the connectivity of the algorithm to either 6 or 26.

Parameters:

conn - the 3D connectivity to use, either 6 or 26