inra.ijpb.morphology.geodrec

Class GeodesicReconstruction3DAlgoStub

java.lang.Object

inra.ijpb.algo.AlgoStub

inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgoStub

All Implemented Interfaces:

Algo, GeodesicReconstruction3DAlgo

Direct Known Subclasses:

GeodesicReconstruction3DHybrid0Float, GeodesicReconstruction3DHybrid0Gray16, GeodesicReconstruction3DHybrid0Gray8, GeodesicReconstruction3DHybrid1Image3D, GeodesicReconstructionByDilation3D, GeodesicReconstructionByDilation3DGray8, GeodesicReconstructionByDilation3DScanning, GeodesicReconstructionByDilation3DScanningGray8, GeodesicReconstructionByErosion3DGray8, GeodesicReconstructionByErosion3DScanning, GeodesicReconstructionByErosion3DScanningGray8

public abstract class GeodesicReconstruction3DAlgoStub
extends AlgoStub
implements GeodesicReconstruction3DAlgo

Implementation basis for geodesic reconstruction algorithms for 3D images.

This class provides the management of the connectivity, several fields to manage algorithm monitoring, and protected utility methods.

Author:

dlegland

Field Summary

Fields

Modifier and Type	Field and Description
protected int	connectivity The connectivity of the algorithm, either 6 or 26.
boolean	showProgress Boolean flag for the display of algorithm progress in ImageJ status bar
boolean	showStatus Boolean flag for the display of algorithm state in ImageJ status bar
boolean	verbose Boolean flag for the display of debugging infos.

Constructor Summary

Constructors

Constructor and Description
GeodesicReconstruction3DAlgoStub()

Method Summary

Modifier and Type	Method and Description
int	getConnectivity() Returns the chosen connectivity of the algorithm, either 6 or 26.
void	setConnectivity(int conn) Changes the connectivity of the algorithm to either 6 or 26.
protected void	showProgress(double current, double max) Displays the current progression of the algorithm in the status bar of the ImageJ frame, if the showProgress flag is true.
protected void	showProgress(double current, double max, String msg) Displays the current progression of the algorithm in the status bar of the ImageJ frame, if the showProgress flag is true.
protected void	showStatus(String status) Displays the specified message in the status bar of the ImageJ frame, if the showStatus flag is true.
protected void	trace(String traceMessage) Display a trace message in the console, if the verbose flag is true.

Methods inherited from class inra.ijpb.algo.AlgoStub

addAlgoListener, fireProgressChanged, fireProgressChanged, fireStatusChanged, fireStatusChanged, removeAlgoListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgo

applyTo, applyTo

Methods inherited from interface inra.ijpb.algo.Algo

addAlgoListener, removeAlgoListener

Field Detail

connectivity

protected int connectivity

The connectivity of the algorithm, either 6 or 26.

verbose

public boolean verbose

Boolean flag for the display of debugging infos.

showStatus

public boolean showStatus

Boolean flag for the display of algorithm state in ImageJ status bar

showProgress

public boolean showProgress

Boolean flag for the display of algorithm progress in ImageJ status bar

Constructor Detail

GeodesicReconstruction3DAlgoStub

public GeodesicReconstruction3DAlgoStub()

Method Detail

getConnectivity

public int getConnectivity()

Description copied from interface: GeodesicReconstruction3DAlgo

Returns the chosen connectivity of the algorithm, either 6 or 26.

Specified by:

getConnectivity in interface GeodesicReconstruction3DAlgo

Returns:

the current connectivity for this algorithm

setConnectivity

public void setConnectivity(int conn)

Description copied from interface: GeodesicReconstruction3DAlgo

Changes the connectivity of the algorithm to either 6 or 26.

Specified by:

setConnectivity in interface GeodesicReconstruction3DAlgo

Parameters:

conn - the 3D connectivity to use, either 6 or 26

showStatus

protected void showStatus(String status)

Displays the specified message in the status bar of the ImageJ frame, if the showStatus flag is true.

Parameters:

status - the message to display

showProgress

protected void showProgress(double current,
                            double max)

Displays the current progression of the algorithm in the status bar of the ImageJ frame, if the showProgress flag is true.

Parameters:

current - the current progression

max - the maximum possible value for progression

showProgress

protected void showProgress(double current,
                            double max,
                            String msg)

Displays the current progression of the algorithm in the status bar of the ImageJ frame, if the showProgress flag is true.

Parameters:

current - the current progression

max - the maximum possible value for progression

msg - an additional message that will be displayed in the console

trace

protected void trace(String traceMessage)

Display a trace message in the console, if the verbose flag is true.

Parameters:

traceMessage - the message to display