Index (ImageJ2 Javadocs 0-SNAPSHOT API)

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

a() - Method in class net.imagej.axis.Variable1Axis
A(long[], int) - Static method in class net.imagej.ops.threshold.Thresholds: The partial sum A from C.
about() - Method in class net.imagej.app.ImageJApp
about() - Method in class net.imagej.legacy.LegacyImageJApp
AboutImageJ - Class in net.imagej.app: Displays information and credits about the ImageJ software.
AboutImageJ() - Constructor for class net.imagej.app.AboutImageJ
abs(double) - Method in class net.imagej.ops.math.MathNamespace
abs(float) - Method in class net.imagej.ops.math.MathNamespace
abs(int) - Method in class net.imagej.ops.math.MathNamespace
abs(long) - Method in class net.imagej.ops.math.MathNamespace
abs(O, I) - Method in class net.imagej.ops.math.MathNamespace
Abs() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Abs
abs() - Method in class net.imagej.types.PreciseFixedFloatType
AbsDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign: Fills an output Dataset by applying the absolute value function to an input Dataset.
AbsDataValues() - Constructor for class net.imagej.plugins.commands.assign.AbsDataValues
Abstract3x3NeighbourhoodThinning - Class in net.imagej.ops.morphology.thin: This abstract class represents an rough framework for a Thinning algorithm operating on a 3x3 neighbourhood by providing some often needed functions.
Abstract3x3NeighbourhoodThinning() - Constructor for class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning
Abstract3x3NeighbourhoodThinning(boolean) - Constructor for class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning: Create a new abstract thinning strategy.
AbstractAnnotatedSpace<A extends Axis> - Class in net.imagej.space: Abstract base class for AnnotatedSpace implementations.
AbstractAnnotatedSpace(int) - Constructor for class net.imagej.space.AbstractAnnotatedSpace
AbstractAnnotatedSpace(A...) - Constructor for class net.imagej.space.AbstractAnnotatedSpace
AbstractAnnotatedSpace(List<A>) - Constructor for class net.imagej.space.AbstractAnnotatedSpace
AbstractApplyThresholdImg<T> - Class in net.imagej.ops.threshold: Abstract superclass of ApplyThresholdIterable implementations that operate on Img objects.
AbstractApplyThresholdImg() - Constructor for class net.imagej.ops.threshold.AbstractApplyThresholdImg
AbstractApplyThresholdIterable<T,I extends Iterable<T>,O extends Iterable<BitType>> - Class in net.imagej.ops.threshold: Abstract superclass of ApplyThresholdIterable implementations.
AbstractApplyThresholdIterable() - Constructor for class net.imagej.ops.threshold.AbstractApplyThresholdIterable
AbstractAutoscaleMethod<T extends RealType<T>> - Class in net.imagej.autoscale: Abstract base class for AutoscaleMethod plugins.
AbstractAutoscaleMethod() - Constructor for class net.imagej.autoscale.AbstractAutoscaleMethod
AbstractBinaryCommand - Class in net.imagej.plugins.commands.binary: Abstract super class for binarization commands like Create Mask and Make Binary.
AbstractBinaryCommand() - Constructor for class net.imagej.plugins.commands.binary.AbstractBinaryCommand
AbstractBinaryComputerOp<I1,I2,O> - Class in net.imagej.ops.special.computer: Abstract superclass for BinaryComputerOp implementations.
AbstractBinaryComputerOp() - Constructor for class net.imagej.ops.special.computer.AbstractBinaryComputerOp
AbstractBinaryFunctionOp<I1,I2,O> - Class in net.imagej.ops.special.function: Abstract superclass for BinaryFunctionOp implementations.
AbstractBinaryFunctionOp() - Constructor for class net.imagej.ops.special.function.AbstractBinaryFunctionOp
AbstractBinaryHybridC<I1,I2,O> - Class in net.imagej.ops.special.hybrid: Abstract superclass for BinaryHybridCF and BinaryHybridCI1 implementations.
AbstractBinaryHybridC() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridC
AbstractBinaryHybridCF<I1,I2,O> - Class in net.imagej.ops.special.hybrid: Abstract superclass for BinaryHybridCF implementations.
AbstractBinaryHybridCF() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridCF
AbstractBinaryHybridCFI<I,O extends I> - Class in net.imagej.ops.special.hybrid: Abstract superclass for BinaryHybridCFI implementations.
AbstractBinaryHybridCFI() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridCFI
AbstractBinaryHybridCFI1<I1,I2,O extends I1> - Class in net.imagej.ops.special.hybrid: Abstract superclass for BinaryHybridCFI1 implementations.
AbstractBinaryHybridCFI1() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridCFI1
AbstractBinaryHybridCI<I,O extends I> - Class in net.imagej.ops.special.hybrid: Abstract superclass for BinaryHybridCI implementations.
AbstractBinaryHybridCI() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridCI
AbstractBinaryHybridCI1<I1,I2,O extends I1> - Class in net.imagej.ops.special.hybrid: Abstract superclass for BinaryHybridCI1 implementations.
AbstractBinaryHybridCI1() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridCI1
AbstractBinaryInplace1Op<A,I> - Class in net.imagej.ops.special.inplace: Abstract superclass for BinaryInplace1OnlyOp implementations.
AbstractBinaryInplace1Op() - Constructor for class net.imagej.ops.special.inplace.AbstractBinaryInplace1Op
AbstractBinaryInplaceOp<A> - Class in net.imagej.ops.special.inplace: Abstract superclass for BinaryInplaceOnlyOp implementations.
AbstractBinaryInplaceOp() - Constructor for class net.imagej.ops.special.inplace.AbstractBinaryInplaceOp
AbstractBinaryOp<I1,I2,O> - Class in net.imagej.ops.special: Abstract base class for BinaryOp implementations.
AbstractBinaryOp() - Constructor for class net.imagej.ops.special.AbstractBinaryOp
AbstractBoundarySizeConvexHull - Class in net.imagej.ops.geom: Generic implementation of Ops.Geometric.BoundarySizeConvexHull.
AbstractBoundarySizeConvexHull(Class) - Constructor for class net.imagej.ops.geom.AbstractBoundarySizeConvexHull
AbstractBoxivity - Class in net.imagej.ops.geom: Generic implementation of Ops.Geometric.Boxivity.
AbstractBoxivity(Class) - Constructor for class net.imagej.ops.geom.AbstractBoxivity
AbstractCalibratedAxis - Class in net.imagej.axis: Abstract base class for CalibratedAxis.
AbstractCalibratedAxis(AxisType) - Constructor for class net.imagej.axis.AbstractCalibratedAxis
AbstractCalibratedAxis(AxisType, String) - Constructor for class net.imagej.axis.AbstractCalibratedAxis
AbstractCalibratedRealInterval<A extends CalibratedAxis> - Class in net.imagej.interval: Abstract base class for CalibratedRealInterval.
AbstractCalibratedRealInterval(RealInterval) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedRealInterval(RealInterval, A...) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedRealInterval(RealInterval, List<A>) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedRealInterval(double[]) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedRealInterval(double[], A...) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedRealInterval(double[], List<A>) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedRealInterval(double[], double[]) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedRealInterval(double[], double[], A...) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedRealInterval(double[], double[], List<A>) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedSpace<A extends CalibratedAxis> - Class in net.imagej.space: Abstract base class for CalibratedSpace.
AbstractCalibratedSpace(int) - Constructor for class net.imagej.space.AbstractCalibratedSpace
AbstractCalibratedSpace(A...) - Constructor for class net.imagej.space.AbstractCalibratedSpace
AbstractCalibratedSpace(List<A>) - Constructor for class net.imagej.space.AbstractCalibratedSpace
AbstractCenterAwareComputerOp<I,O> - Class in net.imagej.ops.map.neighborhood: Abstract superclass for CenterAwareComputerOp implementations.
AbstractCenterAwareComputerOp() - Constructor for class net.imagej.ops.map.neighborhood.AbstractCenterAwareComputerOp
AbstractCenterAwareNeighborhoodBasedFilter<I,O> - Class in net.imagej.ops.filter
AbstractCenterAwareNeighborhoodBasedFilter() - Constructor for class net.imagej.ops.filter.AbstractCenterAwareNeighborhoodBasedFilter
AbstractChunker - Class in net.imagej.ops.thread.chunker: Abstract ChunkerOp.
AbstractChunker() - Constructor for class net.imagej.ops.thread.chunker.AbstractChunker
AbstractColorTool - Class in net.imagej.plugins.tools: Abstract superclass for the BgColorTool and FgColorTool classes.
AbstractColorTool() - Constructor for class net.imagej.plugins.tools.AbstractColorTool
AbstractComputeThresholdHistogram<T extends RealType<T>> - Class in net.imagej.ops.threshold: Abstract superclass of ComputeThresholdHistogram implementations.
AbstractComputeThresholdHistogram() - Constructor for class net.imagej.ops.threshold.AbstractComputeThresholdHistogram
AbstractConvexity - Class in net.imagej.ops.geom: Generic implementation of Ops.Geometric.Convexity.
AbstractConvexity() - Constructor for class net.imagej.ops.geom.AbstractConvexity
AbstractData - Class in net.imagej: Base implementation of Data.
AbstractData(RealInterval) - Constructor for class net.imagej.AbstractData: Default constructor for use by serialization code.
AbstractData(Context, RealInterval) - Constructor for class net.imagej.AbstractData: TODO
AbstractDataView - Class in net.imagej.display: Abstract superclass for DataViews.
AbstractDataView() - Constructor for class net.imagej.display.AbstractDataView
AbstractFFTFilterC,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>> - Class in net.imagej.ops.filter: Abstract class for FFT based filter computers
AbstractFFTFilterC() - Constructor for class net.imagej.ops.filter.AbstractFFTFilterC
AbstractHaralickFeature<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Abstract class for HaralickFeatures.
AbstractHaralickFeature() - Constructor for class net.imagej.ops.features.haralick.AbstractHaralickFeature
AbstractHelp - Class in net.imagej.ops.help: Base class for help operations.
AbstractHelp() - Constructor for class net.imagej.ops.help.AbstractHelp
AbstractIdentity<T> - Class in net.imagej.ops.identity: Abstract superclass of IdentityOp implementations.
AbstractIdentity() - Constructor for class net.imagej.ops.identity.AbstractIdentity
AbstractIJRoiToMaskPredicate<R extends Roi,M extends MaskPredicate<? extends RealLocalizable>,C extends AbstractRoiToMaskPredicateConverter<R,M>> - Class in net.imagej.omero.legacy.convert: Abstract base class for Converters which convert Roi to MaskPredicate and updates the OMEROService roi mappings.
AbstractIJRoiToMaskPredicate() - Constructor for class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
AbstractIJRoiWrapperToShapeData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.AbstractIJRoiWrapperToShapeData
AbstractImageDisplayViewer - Class in net.imagej.ui.viewer.image: The AbstractImageDisplayViewer implements the UI-independent elements of an image display viewer.
AbstractImageDisplayViewer() - Constructor for class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
AbstractImageDisplayViewer.ZoomScaleOption - Enum in net.imagej.ui.viewer.image
AbstractImageMomentOp,O extends RealType<O>> - Class in net.imagej.ops.imagemoments: Abstract ImageMomentOp.
AbstractImageMomentOp() - Constructor for class net.imagej.ops.imagemoments.AbstractImageMomentOp
AbstractIntegralImg> - Class in net.imagej.ops.image.integral: Abstract base class for n-dimensional integral images.
AbstractIntegralImg() - Constructor for class net.imagej.ops.image.integral.AbstractIntegralImg
AbstractIterativeFFTFilterC,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>> - Class in net.imagej.ops.filter: Abstract class for iterative FFT filters that perform on RAI.
AbstractIterativeFFTFilterC() - Constructor for class net.imagej.ops.filter.AbstractIterativeFFTFilterC
AbstractJHotDrawAdapter<O extends Overlay,F extends Figure> - Class in net.imagej.ui.swing.overlay: An abstract class that gives default behavior for the JHotDrawAdapter interface.
AbstractJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter
AbstractLBP2DFeature> - Class in net.imagej.ops.features.lbp2d: Abstract class for 2d local binary pattern feature
AbstractLBP2DFeature() - Constructor for class net.imagej.ops.features.lbp2d.AbstractLBP2DFeature
AbstractLegacyAdapter - Class in net.imagej.legacy.ui: Abstract LegacyAdapter implementation.
AbstractLegacyAdapter(LegacyService) - Constructor for class net.imagej.legacy.ui.AbstractLegacyAdapter
AbstractLegacyConverter<I,O> - Class in net.imagej.legacy.convert: Base Converter class for converting ImageJ 1.x data structures.
AbstractLegacyConverter() - Constructor for class net.imagej.legacy.convert.AbstractLegacyConverter
AbstractLinearSpace<A extends LinearAxis> - Class in net.imagej.space: Abstract base class for LinearSpace.
AbstractLinearSpace(int) - Constructor for class net.imagej.space.AbstractLinearSpace
AbstractLinearSpace(A...) - Constructor for class net.imagej.space.AbstractLinearSpace
AbstractLinearSpace(List<A>) - Constructor for class net.imagej.space.AbstractLinearSpace
AbstractLineTool - Class in net.imagej.plugins.tools: Abstract class that is used by PencilTool, PaintBrushTool, and their erase modes to draw lines into a dataset using fg/bg values.
AbstractLineTool() - Constructor for class net.imagej.plugins.tools.AbstractLineTool
AbstractMapBinaryComputer<EI1,EI2,EO,PI1,PI2,PO> - Class in net.imagej.ops.map: Abstract base class for MapBinaryComputer implementations.
AbstractMapBinaryComputer() - Constructor for class net.imagej.ops.map.AbstractMapBinaryComputer
AbstractMapBinaryInplace<EI,EO extends EI,PA> - Class in net.imagej.ops.map: Abstract base class for MapBinaryInplace implementations.
AbstractMapBinaryInplace() - Constructor for class net.imagej.ops.map.AbstractMapBinaryInplace
AbstractMapBinaryInplace1<EI1,EI2,EO extends EI1,PA,PI> - Class in net.imagej.ops.map: Abstract base class for MapBinaryInplace1 implementations.
AbstractMapBinaryInplace1() - Constructor for class net.imagej.ops.map.AbstractMapBinaryInplace1
AbstractMapComputer<EI,EO,PI,PO> - Class in net.imagej.ops.map: Abstract base class for MapUnaryComputer implementations.
AbstractMapComputer() - Constructor for class net.imagej.ops.map.AbstractMapComputer
AbstractMapInplace<EI,EO extends EI,PA> - Class in net.imagej.ops.map: Abstract base class for MapInplace implementations.
AbstractMapInplace() - Constructor for class net.imagej.ops.map.AbstractMapInplace
AbstractMapIterableInplace<EI,EO extends EI,PA extends Iterable<EI>> - Class in net.imagej.ops.map: Abstract base class for MapInplace implementations that operate on Iterables.
AbstractMapIterableInplace() - Constructor for class net.imagej.ops.map.AbstractMapIterableInplace
AbstractMapNeighborhood<EI,EO,PI,PO,OP extends Op> - Class in net.imagej.ops.map.neighborhood: Abstract base class for MapNeighborhood implementations.
AbstractMapNeighborhood() - Constructor for class net.imagej.ops.map.neighborhood.AbstractMapNeighborhood
AbstractMapNullaryComputer<EO,PO> - Class in net.imagej.ops.map: Abstract base class for MapNullaryComputer implementations.
AbstractMapNullaryComputer() - Constructor for class net.imagej.ops.map.AbstractMapNullaryComputer
AbstractMapView<EI,EO,PI,PO> - Class in net.imagej.ops.map: Abstract base class for MapView implementations.
AbstractMapView() - Constructor for class net.imagej.ops.map.AbstractMapView
AbstractMaskPredicateToRoiConverter<M extends MaskPredicate<?>,R extends Roi> - Class in net.imagej.legacy.convert.roi: Abstract base class for converting MaskPredicates to Rois.
AbstractMaskPredicateToRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter
AbstractMaskPredicateToShapeData<L,M extends MaskPredicate<L>,S extends ShapeData> - Class in net.imagej.omero.roi: Abstract base class for converting MaskPredicate to OMERO ShapeData.
AbstractMaskPredicateToShapeData() - Constructor for class net.imagej.omero.roi.AbstractMaskPredicateToShapeData
AbstractMaskPredicateUnwrapConverter<M extends MaskPredicate<?>> - Class in net.imagej.legacy.convert.roi: Abstract base class for converters which unwrap wrapped MaskPredicates.
AbstractMaskPredicateUnwrapConverter() - Constructor for class net.imagej.legacy.convert.roi.AbstractMaskPredicateUnwrapConverter
AbstractMaskToRAConverter<M extends Mask,R extends RandomAccessible<BoolType>> - Class in net.imagej.roi: Base class for converting Mask to RandomAccessible.
AbstractMaskToRAConverter() - Constructor for class net.imagej.roi.AbstractMaskToRAConverter
AbstractMinMaxMethod<T extends Type<T> & Comparable<T>> - Class in net.imagej.minmax: Abstract superclass for MinMaxMethod implementations.
AbstractMinMaxMethod() - Constructor for class net.imagej.minmax.AbstractMinMaxMethod
AbstractMorphOpsCommand - Class in net.imagej.plugins.commands.binary: Abstract super class for commands that modify binary images in place.
AbstractMorphOpsCommand() - Constructor for class net.imagej.plugins.commands.binary.AbstractMorphOpsCommand
AbstractNamespace - Class in net.imagej.ops: Abstract base class for Namespace implementations.
AbstractNamespace() - Constructor for class net.imagej.ops.AbstractNamespace
AbstractNeighborhoodBasedFilter<I,O> - Class in net.imagej.ops.filter
AbstractNeighborhoodBasedFilter() - Constructor for class net.imagej.ops.filter.AbstractNeighborhoodBasedFilter
AbstractNoiseReducerPlugin> - Class in net.imagej.plugins.commands.assign.noisereduce: Abstract super class for noise reduction plugin implementations.
AbstractNoiseReducerPlugin() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
AbstractNoiseReducerPlugin.NeighborhoodType - Enum in net.imagej.plugins.commands.assign.noisereduce
AbstractNullaryComputerOp<O> - Class in net.imagej.ops.special.computer: Abstract superclass for BinaryComputerOp implementations.
AbstractNullaryComputerOp() - Constructor for class net.imagej.ops.special.computer.AbstractNullaryComputerOp
AbstractNullaryFunctionOp<O> - Class in net.imagej.ops.special.function: Abstract superclass for NullaryFunctionOp implementations.
AbstractNullaryFunctionOp() - Constructor for class net.imagej.ops.special.function.AbstractNullaryFunctionOp
AbstractNullaryHybridCF<O> - Class in net.imagej.ops.special.hybrid: Abstract superclass for NullaryHybridCF implementations.
AbstractNullaryHybridCF() - Constructor for class net.imagej.ops.special.hybrid.AbstractNullaryHybridCF
AbstractNullaryOp<O> - Class in net.imagej.ops.special: Abstract base class for NullaryOp implementations.
AbstractNullaryOp() - Constructor for class net.imagej.ops.special.AbstractNullaryOp
AbstractOMEROEllipse - Class in net.imagej.omero.roi.ellipse: Base class for OMEROEllipse.
AbstractOMEROEllipse(EllipseData, BoundaryType) - Constructor for class net.imagej.omero.roi.ellipse.AbstractOMEROEllipse
AbstractOMEROPolygon - Class in net.imagej.omero.roi.polyshape: Base class for OMEROPolygon.
AbstractOMEROPolygon(PolygonData, BoundaryType) - Constructor for class net.imagej.omero.roi.polyshape.AbstractOMEROPolygon
AbstractOMERORealMaskRealInterval<S extends ShapeData> - Class in net.imagej.omero.roi: Abstract base class for OMERORealMaskRealInterval implementations.
AbstractOMERORealMaskRealInterval(S, BoundaryType) - Constructor for class net.imagej.omero.roi.AbstractOMERORealMaskRealInterval
AbstractOMERORealMaskToIJRoi() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.AbstractOMERORealMaskToIJRoi
AbstractOMERORealMaskUnwrapper<S extends ShapeData,O extends OMERORealMask<S>> - Class in net.imagej.omero.roi: Unwraps OMERORealMask objects.
AbstractOMERORealMaskUnwrapper() - Constructor for class net.imagej.omero.roi.AbstractOMERORealMaskUnwrapper
AbstractOMERORectangle - Class in net.imagej.omero.roi.rectangle: Base class for OMERORectangle.
AbstractOMERORectangle(RectangleData, BoundaryType) - Constructor for class net.imagej.omero.roi.rectangle.AbstractOMERORectangle
AbstractOp - Class in net.imagej.ops: Abstract superclass for Op implementations.
AbstractOp() - Constructor for class net.imagej.ops.AbstractOp
AbstractOverlay - Class in net.imagej.overlay: Abstract superclass of Overlay implementations.
AbstractOverlay(RealInterval) - Constructor for class net.imagej.overlay.AbstractOverlay
AbstractOverlay(Context, RealInterval) - Constructor for class net.imagej.overlay.AbstractOverlay
AbstractOverlayProperties - Class in net.imagej.plugins.commands.overlay: A plugin to change the properties (e.g., line color, line width) of a given set of overlays.
AbstractOverlayProperties() - Constructor for class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
AbstractPadAndFFTFilter,O extends RealType<O> & NativeType<O>,K extends RealType<K>,C extends ComplexType<C> & NativeType<C>> - Class in net.imagej.ops.filter: Abstract class for binary filter that performs operations using an image and kernel in the frequency domain using the imglib2 FFTMethods library.
AbstractPadAndFFTFilter() - Constructor for class net.imagej.ops.filter.AbstractPadAndFFTFilter
AbstractPlanarCommand - Class in net.imagej.command: Abstract superclass for commands that can operate on a single plane.
AbstractPlanarCommand() - Constructor for class net.imagej.command.AbstractPlanarCommand
AbstractPolygonRoiWrapper - Class in net.imagej.legacy.convert.roi: Abstract base class for wrapping ImageJ 1.x objects which are PolygonRois (i.e.
AbstractPolygonRoiWrapper(int[], int[], int, int) - Constructor for class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper: Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polygon2D or Polyline.
AbstractPolygonRoiWrapper(float[], float[], int, int) - Constructor for class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper: Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polygon2D or Polyline.
AbstractPolygonRoiWrapper(float[], float[], int) - Constructor for class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper: Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Mask.
AbstractPolygonRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper: Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Mask.
AbstractProgressable - Class in net.imagej.updater.util: Abstract superclass for Progressable implementations.
AbstractProgressable() - Constructor for class net.imagej.updater.util.AbstractProgressable
AbstractRAToMaskConverter<R extends RandomAccessible<BoolType>,M extends Mask> - Class in net.imagej.roi: Abstract base class for converting RandomAccessible to Mask.
AbstractRAToMaskConverter() - Constructor for class net.imagej.roi.AbstractRAToMaskConverter
AbstractRealMaskToRRAConverter<M extends RealMask,R extends RealRandomAccessible<BoolType>> - Class in net.imagej.roi: Base class for converting RealMask to RealRandomAccessible.
AbstractRealMaskToRRAConverter() - Constructor for class net.imagej.roi.AbstractRealMaskToRRAConverter
AbstractROIOverlay<R extends RegionOfInterest> - Class in net.imagej.overlay: An overlay that has an associated region of interest
AbstractROIOverlay(R) - Constructor for class net.imagej.overlay.AbstractROIOverlay
AbstractROIOverlay(Context, R) - Constructor for class net.imagej.overlay.AbstractROIOverlay
AbstractRoiToMaskPredicateConverter<R extends Roi,M extends MaskPredicate<? extends RealLocalizable>> - Class in net.imagej.legacy.convert.roi: Base class for all converters which convert Roi to MaskPredicate.
AbstractRoiToMaskPredicateConverter() - Constructor for class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter
AbstractRoiUnwrapConverter<R extends Roi> - Class in net.imagej.legacy.convert.roi: Abstract base class for converters which unwrap wrapped ImageJ 1.x Rois.
AbstractRoiUnwrapConverter() - Constructor for class net.imagej.legacy.convert.roi.AbstractRoiUnwrapConverter
AbstractRRAToRealMaskConverter<R extends RealRandomAccessible<BoolType>,M extends RealMask> - Class in net.imagej.roi: Abstract base class for convert RealRandomAccessible to RealMask.
AbstractRRAToRealMaskConverter() - Constructor for class net.imagej.roi.AbstractRRAToRealMaskConverter
AbstractShadows - Class in net.imagej.plugins.commands.correlate: Abstract superclass for Shadows plugins.
AbstractShapeDataToRealMaskRealInterval<S extends ShapeData,M extends RealMaskRealInterval> - Class in net.imagej.omero.roi: Abstract base class for converting OMERO ShapeData to RealMask.
AbstractShapeDataToRealMaskRealInterval() - Constructor for class net.imagej.omero.roi.AbstractShapeDataToRealMaskRealInterval
AbstractSizeConvexHull - Class in net.imagej.ops.geom: Generic implementation of Ops.Geometric.SizeConvexHull .
AbstractSizeConvexHull(Class) - Constructor for class net.imagej.ops.geom.AbstractSizeConvexHull
AbstractSolidity - Class in net.imagej.ops.geom: Generic implementation of Ops.Geometric.Solidity.
AbstractSolidity() - Constructor for class net.imagej.ops.geom.AbstractSolidity
AbstractStatsOp<I,O extends RealType<O>> - Class in net.imagej.ops.stats: Abstract Statistics Op.
AbstractStatsOp() - Constructor for class net.imagej.ops.stats.AbstractStatsOp
AbstractSwingImageDisplayViewer - Class in net.imagej.ui.swing.viewer.image: A Swing image display viewer, which displays 2D planes in grayscale or composite color.
AbstractSwingImageDisplayViewer() - Constructor for class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer
AbstractTableToResultsTableConverter() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.AbstractTableToResultsTableConverter
AbstractTamuraFeature,O extends RealType<O>> - Class in net.imagej.ops.features.tamura2d: Abstract tamura feature.
AbstractTamuraFeature() - Constructor for class net.imagej.ops.features.tamura2d.AbstractTamuraFeature
AbstractThin - Class in net.imagej.ops.morphology.thin: Thinning Operation
AbstractThin() - Constructor for class net.imagej.ops.morphology.thin.AbstractThin
AbstractTreeNodeToROIData<D extends TreeNode<?>> - Class in net.imagej.omero.roi: Abstract base layer for converting TreeNode to ROIData.
AbstractTreeNodeToROIData() - Constructor for class net.imagej.omero.roi.AbstractTreeNodeToROIData
AbstractTypedSpace<A extends TypedAxis> - Class in net.imagej.space: Abstract base class for TypedSpace.
AbstractTypedSpace(int) - Constructor for class net.imagej.space.AbstractTypedSpace
AbstractTypedSpace(A...) - Constructor for class net.imagej.space.AbstractTypedSpace
AbstractTypedSpace(List<A>) - Constructor for class net.imagej.space.AbstractTypedSpace
AbstractUnaryComputerOp<I,O> - Class in net.imagej.ops.special.computer: Abstract superclass for UnaryComputerOp implementations.
AbstractUnaryComputerOp() - Constructor for class net.imagej.ops.special.computer.AbstractUnaryComputerOp
AbstractUnaryFunctionOp<I,O> - Class in net.imagej.ops.special.function: Abstract superclass for UnaryFunctionOp implementations.
AbstractUnaryFunctionOp() - Constructor for class net.imagej.ops.special.function.AbstractUnaryFunctionOp
AbstractUnaryHybridC<I,O> - Class in net.imagej.ops.special.hybrid: Abstract superclass for UnaryHybridCF and UnaryHybridCI implementations.
AbstractUnaryHybridC() - Constructor for class net.imagej.ops.special.hybrid.AbstractUnaryHybridC
AbstractUnaryHybridCF<I,O> - Class in net.imagej.ops.special.hybrid: Abstract superclass for UnaryHybridCF implementations.
AbstractUnaryHybridCF() - Constructor for class net.imagej.ops.special.hybrid.AbstractUnaryHybridCF
AbstractUnaryHybridCFI<I,O extends I> - Class in net.imagej.ops.special.hybrid: Abstract superclass for UnaryHybridCFI implementations.
AbstractUnaryHybridCFI() - Constructor for class net.imagej.ops.special.hybrid.AbstractUnaryHybridCFI
AbstractUnaryHybridCI<I,O extends I> - Class in net.imagej.ops.special.hybrid: Abstract superclass for UnaryHybridCI implementations.
AbstractUnaryHybridCI() - Constructor for class net.imagej.ops.special.hybrid.AbstractUnaryHybridCI
AbstractUnaryInplaceOp<A> - Class in net.imagej.ops.special.inplace: Abstract superclass for UnaryInplaceOnlyOp implementations.
AbstractUnaryInplaceOp() - Constructor for class net.imagej.ops.special.inplace.AbstractUnaryInplaceOp
AbstractUnaryOp<I,O> - Class in net.imagej.ops.special: Abstract base class for UnaryOp implementations.
AbstractUnaryOp() - Constructor for class net.imagej.ops.special.AbstractUnaryOp
AbstractUploader - Class in net.imagej.updater: Abstract base class for ImageJ upload mechanisms.
AbstractUploader() - Constructor for class net.imagej.updater.AbstractUploader
AbstractVertexInterpolator - Class in net.imagej.ops.geom.geom3d.mesh: This is the AbstractVertexInterpolator.
AbstractVertexInterpolator() - Constructor for class net.imagej.ops.geom.geom3d.mesh.AbstractVertexInterpolator
AbstractWrappedOMERORealMaskToMaskPredicate() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.AbstractWrappedOMERORealMaskToMaskPredicate
AbstractZernikeFeature,O extends RealType<O>> - Class in net.imagej.ops.features.zernike: Abstract Zernike Op.
AbstractZernikeFeature() - Constructor for class net.imagej.ops.features.zernike.AbstractZernikeFeature
accelerate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator
accelerate(RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
AcceleratorHandler - Class in net.imagej.plugins.tools: Handles keyboard accelerator combinations that launch modules.
AcceleratorHandler() - Constructor for class net.imagej.plugins.tools.AcceleratorHandler
access - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser
accessTextFields() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
accessTextFields() - Method in class net.imagej.patcher.HeadlessGenericDialog
ACTION_ATTRIBUTE - Static variable in class net.imagej.ui.swing.updater.DiffView
actionPerformed(ActionEvent) - Method in class net.imagej.ui.swing.overlay.SwingOverlayManager
actionPerformed(ActionEvent) - Method in class net.imagej.ui.swing.updater.ConflictDialog
actionPerformed(ActionEvent) - Method in class net.imagej.ui.swing.updater.ReviewSiteURLsDialog
actionPerformed(ActionEvent) - Method in class net.imagej.ui.swing.updater.SitesDialog
actionResolution(String, FileObject, FileObject.Action...) - Method in class net.imagej.updater.Conflicts
actionResolution(String, Iterable<FileObject>, FileObject.Action...) - Method in class net.imagej.updater.Conflicts
actionSpecified() - Method in class net.imagej.updater.FileObject
activate() - Method in class net.imagej.legacy.ui.LegacyApplicationFrame
activate(DrawingEditor) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
activateUpdateSite(UpdateSite) - Method in class net.imagej.ui.swing.updater.SitesDialog
activateUpdateSite(UpdateSite, Progress) - Method in class net.imagej.updater.FilesCollection: Activate the given update site.
ActiveChannelCollectionPreprocessor - Class in net.imagej.display.process: Assigns the active ChannelCollection when there is one single unresolved ChannelCollection parameter.
ActiveChannelCollectionPreprocessor() - Constructor for class net.imagej.display.process.ActiveChannelCollectionPreprocessor
ActiveDatasetPreprocessor - Class in net.imagej.display.process: Fills single, unresolved module inputs with the active active Dataset.
ActiveDatasetPreprocessor() - Constructor for class net.imagej.display.process.ActiveDatasetPreprocessor
ActiveDatasetViewPreprocessor - Class in net.imagej.display.process: Assigns the active DatasetView when there is one single unresolved DatasetView parameter.
ActiveDatasetViewPreprocessor() - Constructor for class net.imagej.display.process.ActiveDatasetViewPreprocessor
ActiveDataViewPreprocessor - Class in net.imagej.display.process: Assigns the active DataView when there is one single unresolved DataView parameter.
ActiveDataViewPreprocessor() - Constructor for class net.imagej.display.process.ActiveDataViewPreprocessor
ActiveImageDisplayPreprocessor - Class in net.imagej.display.process: Assigns the active ImageDisplay when there is one single unresolved ImageDisplay parameter.
ActiveImageDisplayPreprocessor() - Constructor for class net.imagej.display.process.ActiveImageDisplayPreprocessor
ActiveImagePlusPreprocessor - Class in net.imagej.legacy.plugin: TODO: this class can be removed once Dataset and ImagePlus conversion is done properly via wrapping.
ActiveImagePlusPreprocessor() - Constructor for class net.imagej.legacy.plugin.ActiveImagePlusPreprocessor
ActiveOverlayPreprocessor - Class in net.imagej.display.process: Assigns the Overlay of the active ImageDisplay when there is one single unresolved Overlay parameter.
ActiveOverlayPreprocessor() - Constructor for class net.imagej.display.process.ActiveOverlayPreprocessor
ActivePositionPreprocessor - Class in net.imagej.display.process: Assigns the Position of the active ImageDisplay when there is one single unresolved Position parameter.
ActivePositionPreprocessor() - Constructor for class net.imagej.display.process.ActivePositionPreprocessor
ActiveROIPostprocessor - Class in net.imagej.omero.legacy: Checks if there are any remaining ROIs in the CacheService (put there by CacheROIPostprocessor) and if so attaches them to the active ImagePlus.
ActiveROIPostprocessor() - Constructor for class net.imagej.omero.legacy.ActiveROIPostprocessor
activeTool - Variable in class net.imagej.ui.swing.overlay.ToolDelegator
add(String) - Method in class net.imagej.display.DefaultWindowService
add(String) - Method in interface net.imagej.display.WindowService: Adds a path to the list of window files.
add(URLClassLoader, String) - Static method in class net.imagej.launcher.ClassLoaderPlus
add(URLClassLoader, File) - Static method in class net.imagej.launcher.ClassLoaderPlus
add(URLClassLoader, URL) - Static method in class net.imagej.launcher.ClassLoaderPlus
add(Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper: Adds the given object to the end of the column.
add(int, Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
add(Column<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
add(int, Column<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
add(ResultsTable) - Method in class net.imagej.legacy.convert.TableListWrapper
add(int, ResultsTable) - Method in class net.imagej.legacy.convert.TableListWrapper
add(long, long, long, double, double, double) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles
add(double, double, double, double, double, double, double, double) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
add(long, long, long, double, double, double) - Method in interface net.imagej.mesh.Triangles: Adds a triangle to the mesh's triangles list.
add(long, long, long) - Method in interface net.imagej.mesh.Triangles: Adds a triangle to the mesh's triangles list.
add(double, double, double, double, double, double, double, double, double, double, double, double) - Method in interface net.imagej.mesh.Triangles: Adds a triangle to the mesh's triangles list.
add(double, double, double, double, double, double, double, double, double) - Method in interface net.imagej.mesh.Triangles: Adds a triangle to the mesh's triangles list.
add(double, double, double) - Method in interface net.imagej.mesh.Vertices: Adds a vertex.
add(double, double, double, double, double, double, double, double) - Method in interface net.imagej.mesh.Vertices: Adds a vertex.
add(Table<?, ?>) - Method in class net.imagej.omero.LazyTableList
add(int, Table<?, ?>) - Method in class net.imagej.omero.LazyTableList
add(Roi) - Method in class net.imagej.omero.legacy.LazyOverlay
add(Roi, String) - Method in class net.imagej.omero.legacy.LazyOverlay
add(Object, Object) - Method in class net.imagej.omero.legacy.LegacyOMEROROIService
add(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
Add() - Constructor for class net.imagej.ops.math.BinaryRealTypeMath.Add
Add() - Constructor for class net.imagej.ops.math.ConstantToIIOutputII.Add
Add() - Constructor for class net.imagej.ops.math.ConstantToIIOutputRAI.Add
Add() - Constructor for class net.imagej.ops.math.IIToIIOutputII.Add
Add() - Constructor for class net.imagej.ops.math.IIToRAIOutputII.Add
add(double, double) - Method in class net.imagej.ops.math.MathNamespace
add(float, float) - Method in class net.imagej.ops.math.MathNamespace
add(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
add(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
add(int, int) - Method in class net.imagej.ops.math.MathNamespace
add(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
add(IterableInterval<T>, IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
add(IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
add(IterableInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
add(long, long) - Method in class net.imagej.ops.math.MathNamespace
add(O, I1, I2) - Method in class net.imagej.ops.math.MathNamespace
add(PlanarImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace
add(PlanarImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace
add(PlanarImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace
add(PlanarImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace
add(PlanarImg<N, LongArray>, long) - Method in class net.imagej.ops.math.MathNamespace
add(PlanarImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace
add(RandomAccessibleInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
add(T, T) - Method in class net.imagej.ops.math.MathNamespace
add(T, T, T) - Method in class net.imagej.ops.math.MathNamespace
add(ArrayImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace
add(ArrayImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace
add(ArrayImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace
add(ArrayImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace
add(ArrayImg<LongType, LongArray>, long) - Method in class net.imagej.ops.math.MathNamespace
add(ArrayImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace
Add() - Constructor for class net.imagej.ops.math.NumericTypeBinaryMath.Add
add() - Method in class net.imagej.plugins.commands.debug.ButtonDemo
add(Object, Object) - Method in interface net.imagej.roi.ROIService: Attaches the given ROI to the given image
add(Table<?, ?>, Dataset) - Method in interface net.imagej.table.TableService: Attaches the given Table to the Dataset
add(BigComplex, BigComplex) - Method in class net.imagej.types.BigComplex: Set self to the result of addition between two BigComplex values.
add(BigComplex) - Method in class net.imagej.types.BigComplex: Adds another BigComplex value to self.
add(PreciseFixedComplexFloatType, PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
add(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
add(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
add(PreciseFixedFloatType, PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
add(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
add(BezierPath, BezierPath) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions
add(FileObject) - Method in class net.imagej.updater.FilesCollection
add(FileObject, FileObject) - Method in class net.imagej.updater.FilesCollection.DependencyMap
addAccelerator(Component, JComponent, ActionListener, int, int) - Static method in class net.imagej.ui.swing.updater.SwingTools: Add a keyboard accelerator to a container.
addAliases(ScriptService) - Method in class net.imagej.legacy.IJ1Helper: Add name aliases for ImageJ1 classes to the ScriptService.
addAll(Collection<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
addAll(int, Collection<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
addAll(Collection<? extends Column<? extends Object>>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
addAll(int, Collection<? extends Column<? extends Object>>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
addAll(Collection<? extends ResultsTable>) - Method in class net.imagej.legacy.convert.TableListWrapper
addAll(int, Collection<? extends ResultsTable>) - Method in class net.imagej.legacy.convert.TableListWrapper
addAll(Collection<? extends Table<?, ?>>) - Method in class net.imagej.omero.LazyTableList
addAll(int, Collection<? extends Table<?, ?>>) - Method in class net.imagej.omero.LazyTableList
AddAndScale(RandomAccessibleInterval<T>, Img<T>, float) - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator
addAuthor(String) - Method in class net.imagej.updater.FileObject
AddAxis - Class in net.imagej.plugins.commands.restructure: Adds a new axis to an input Dataset.
AddAxis() - Constructor for class net.imagej.plugins.commands.restructure.AddAxis
addButton(String, ActionListener) - Method in class net.imagej.ui.swing.updater.ConflictDialog
AddByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddByte
AddByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddByte
AddByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddByte
addCategory(String) - Method in class net.imagej.updater.FileObject
addCheckbox(String, boolean) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addCheckbox(String, boolean) - Method in class net.imagej.patcher.HeadlessGenericDialog
addCheckboxGroup(int, int, String[], boolean[]) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addCheckboxGroup(int, int, String[], boolean[], String[]) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addCheckboxGroup(int, int, String[], boolean[]) - Method in class net.imagej.patcher.HeadlessGenericDialog
addCheckboxGroup(int, int, String[], boolean[], String[]) - Method in class net.imagej.patcher.HeadlessGenericDialog
addChildren(List<? extends TreeNode<?>>) - Method in class net.imagej.omero.roi.DefaultOMEROROICollection
addChoice(String, String[], String) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addChoice(String, String[], String) - Method in class net.imagej.patcher.HeadlessGenericDialog
addClassAndInterfaces(Set<String>, Set<String>, String) - Method in class net.imagej.updater.util.DependencyAnalyzer
addColumns() - Method in class net.imagej.legacy.convert.TableWrapper
addCommand(String, String, String) - Method in class net.imagej.legacy.IJ1Helper
addConflict(String, String, boolean, List<File>) - Method in class net.imagej.updater.Checksummer
addCustomOption(String, Iterable<FileObject>) - Method in class net.imagej.ui.swing.updater.ViewOptions
addCustomViewOptions() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
AddData - Class in net.imagej.plugins.commands.restructure: Adds hyperplanes of data to an input Dataset along a user specified axis.
AddData() - Constructor for class net.imagej.plugins.commands.restructure.AddData
addDependency(FilesCollection, FileObject) - Method in class net.imagej.updater.FileObject
addDependency(String, File) - Method in class net.imagej.updater.FileObject
addDependency(String, long, boolean) - Method in class net.imagej.updater.FileObject
addDependency(Dependency) - Method in class net.imagej.updater.FileObject
addDeserializerTo(ObjectMapper) - Method in class net.imagej.server.services.DefaultJsonService
addDeserializerTo(ObjectMapper) - Method in interface net.imagej.server.services.JsonService: Adds a deserializer to a given ObjectMapper to modify the default behavior.
addDialogListener(DialogListener) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addDialogListener(DialogListener) - Method in class net.imagej.patcher.HeadlessGenericDialog
addDimensionView(RandomAccessibleInterval<T>, long, long) - Method in class net.imagej.ops.transform.TransformNamespace: Create view which adds a dimension to the source RandomAccessibleInterval.
addDimensionView(RandomAccessible<T>) - Method in class net.imagej.ops.transform.TransformNamespace: Create view which adds a dimension to the source RandomAccessible .
AddDimensionViewMinMax<T> - Class in net.imagej.ops.transform.addDimensionView: Wraps the Views.addDimension(RandomAccessibleInterval, long, long) method.
AddDimensionViewMinMax() - Constructor for class net.imagej.ops.transform.addDimensionView.AddDimensionViewMinMax
addDirectoryField(String, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
addDirectoryField(String, String, int) - Method in class net.imagej.patcher.HeadlessGenericDialog
AddDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddDouble
AddDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddDouble
AddDouble() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddDouble
addElement(Roi) - Method in class net.imagej.omero.legacy.LazyOverlay
addEventDispatcher(AWTInputEventDispatcher) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
addEventDispatcher(AWTDropTargetEventDispatcher) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
addEventDispatcher(AWTInputEventDispatcher) - Method in class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel
addf(long, long, long, float, float, float) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles
addf(float, float, float, float, float, float, float, float) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
addf(long, long, long, float, float, float) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles
addf(float, float, float, float, float, float, float, float) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices
addf(long, long, long, float, float, float) - Method in class net.imagej.mesh.nio.BufferMesh.Triangles
addf(float, float, float, float, float, float, float, float) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
addf(long, long, long, float, float, float) - Method in interface net.imagej.mesh.Triangles: Adds a triangle to the mesh's triangles list.
addf(long, long, long) - Method in interface net.imagej.mesh.Triangles: Adds a triangle to the mesh's triangles list.
addf(float, float, float, float, float, float, float, float, float, float, float, float) - Method in interface net.imagej.mesh.Triangles: Adds a triangle to the mesh's triangles list.
addf(float, float, float, float, float, float, float, float, float) - Method in interface net.imagej.mesh.Triangles: Adds a triangle to the mesh's triangles list.
addf(float, float, float, float, float, float, float, float) - Method in interface net.imagej.mesh.Vertices: Adds a vertex.
addf(float, float, float) - Method in interface net.imagej.mesh.Vertices: Adds a vertex.
addFaceInFront(TriangularFacet) - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
addFileField(String, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
addFileField(String, String, int) - Method in class net.imagej.patcher.HeadlessGenericDialog
AddFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddFloat
AddFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddFloat
AddFloat() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddFloat
addHelp(String) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addHelp(String) - Method in class net.imagej.patcher.HeadlessGenericDialog
addImage(ImagePlus) - Method in class net.imagej.patcher.HeadlessGenericDialog
AddImage - Class in net.imagej.plugins.commands.overlay: This is a placeholder command for as yet unfinished Add Image command.
AddImage() - Constructor for class net.imagej.plugins.commands.overlay.AddImage
addImageChoice(String, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
addInImageJDirectory(URLClassLoader, String) - Static method in class net.imagej.launcher.ClassLoaderPlus
AddInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddInt
AddInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddInt
AddInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddInt
addItem(Object) - Method in class net.imagej.ui.swing.updater.ProgressDialog
addItem(Object) - Method in class net.imagej.updater.FilesUploader.VerifyTimestamp
addItem(Object) - Method in class net.imagej.updater.util.AbstractProgressable
addItem(Object) - Method in interface net.imagej.updater.util.Progress
addItem(Object) - Method in class net.imagej.updater.util.StderrProgress
addLabel(String, String) - Method in class net.imagej.legacy.convert.TableWrapper
addLink(String) - Method in class net.imagej.updater.FileObject
AddLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddLong
AddLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddLong
AddLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddLong
addMenuItem(String, String) - Method in class imagej.patcher.LegacyHooks: Deprecated.

Callback for ImageJ 1.x' menu parsing machinery.
addMenuItem(String, String) - Method in class net.imagej.legacy.DefaultLegacyHooks
addMenuItem(String, String) - Method in class net.imagej.patcher.LegacyHooks: Callback for ImageJ 1.x' menu parsing machinery.
addMenuItems() - Method in class net.imagej.legacy.IJ1Helper: Adds legacy-compatible scripts and commands to the ImageJ1 menu structure.
addMessage(String) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addMessage(String, Font) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addMessage(String, Font, Color) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addMessage(String) - Method in class net.imagej.patcher.HeadlessGenericDialog
addMessage(String, Font) - Method in class net.imagej.patcher.HeadlessGenericDialog
addMessage(String, Font, Color) - Method in class net.imagej.patcher.HeadlessGenericDialog
addNewSite - Variable in class net.imagej.ui.swing.updater.SitesDialog
addNoise(I, O, double, double, double, Random) - Static method in class net.imagej.ops.filter.addNoise.AddNoiseRealType
addNoise(O, I, double, double, double) - Method in class net.imagej.ops.filter.FilterNamespace
addNoise(O, I, double, double, double, long) - Method in class net.imagej.ops.filter.FilterNamespace
addNoise(T, double, double, double) - Method in class net.imagej.ops.filter.FilterNamespace
AddNoiseRealType,O extends RealType<O>> - Class in net.imagej.ops.filter.addNoise: Sets the real component of an output real number to the addition of the real component of an input real number with an amount of Gaussian noise.
AddNoiseRealType() - Constructor for class net.imagej.ops.filter.addNoise.AddNoiseRealType
AddNoiseRealTypeCFI<T extends RealType<T>> - Class in net.imagej.ops.filter.addNoise: Adds Gaussian noise to a real number.
AddNoiseRealTypeCFI() - Constructor for class net.imagej.ops.filter.addNoise.AddNoiseRealTypeCFI
AddNoiseToDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign: Fills an output Dataset by applying a default amount of random noise to an input Dataset.
AddNoiseToDataValues() - Constructor for class net.imagej.plugins.commands.assign.AddNoiseToDataValues
addNumericField(String, double, int) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addNumericField(String, double, int, int, String) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addNumericField(String, double) - Method in class net.imagej.patcher.HeadlessGenericDialog
addNumericField(String, double, int) - Method in class net.imagej.patcher.HeadlessGenericDialog
addNumericField(String, double, int, int, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
addOrEditUploadSite(List<String>, boolean) - Method in class net.imagej.updater.CommandLine
addOrEditUploadSite(String, String, String, String, boolean) - Method in class net.imagej.updater.CommandLine
addOverlay(int, Overlay) - Method in class net.imagej.display.OverlayInfoList
addOverlay(Overlay) - Method in class net.imagej.display.OverlayInfoList
addOverlayInfo(int, OverlayInfo) - Method in class net.imagej.display.OverlayInfoList
addOverlayInfo(OverlayInfo) - Method in class net.imagej.display.OverlayInfoList
addOverlays(ImageDisplay, List<? extends Overlay>) - Method in class net.imagej.display.DefaultOverlayService
addOverlays(ImageDisplay, List<? extends Overlay>) - Method in interface net.imagej.display.OverlayService: Adds the list of Overlays to the given ImageDisplay.
addPanel(Panel) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addPanel(Panel, int, Insets) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addPanel(Panel) - Method in class net.imagej.patcher.HeadlessGenericDialog
addPanel(Panel, int, Insets) - Method in class net.imagej.patcher.HeadlessGenericDialog
addPlatform(String) - Method in class net.imagej.updater.FileObject
addPluginClasspath(ClassLoader) - Method in class imagej.patcher.LegacyEnvironment: Deprecated.

Adds the class path of a given ClassLoader to the plugin class loader.
addPluginClasspath(File...) - Method in class imagej.patcher.LegacyEnvironment: Deprecated.

Adds extra elements to the class path of ImageJ 1.x' plugin class loader.
addPluginClasspath(File) - Method in class imagej.patcher.LegacyHooks: Deprecated.
addPluginClasspath(ClassLoader) - Method in class net.imagej.patcher.LegacyEnvironment: Adds the class path of a given ClassLoader to the plugin class loader.
addPluginClasspath(File...) - Method in class net.imagej.patcher.LegacyEnvironment: Adds extra elements to the class path of ImageJ 1.x' plugin class loader.
addPluginClasspath(File) - Method in class net.imagej.patcher.LegacyHooks
addPluginDirectory(File, String[]) - Method in class imagej.patcher.LegacyHooks: Deprecated.

Extension point to modify the order in which .jar files are added to the PluginClassLoader.
addPluginDirectory(File, String[]) - Method in class net.imagej.patcher.LegacyHooks: Extension point to modify the order in which .jar files are added to the PluginClassLoader.
addPoint(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper
addPoissonNoise(O, I) - Method in class net.imagej.ops.filter.FilterNamespace
addPoissonNoise(O, I, long) - Method in class net.imagej.ops.filter.FilterNamespace
addPoissonNoise(IterableInterval<O>, IterableInterval) - Method in class net.imagej.ops.filter.FilterNamespace
AddPoissonNoiseMap<T extends ComplexType<T>> - Class in net.imagej.ops.filter.addPoissonNoise
AddPoissonNoiseMap() - Constructor for class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseMap
AddPoissonNoiseRealType,O extends RealType<O>> - Class in net.imagej.ops.filter.addPoissonNoise: Sets the real component of an output real number to a real number sampled from a Poisson distribution with lambda of the input real number.
AddPoissonNoiseRealType() - Constructor for class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseRealType
addPreviewCheckbox(PlugInFilterRunner) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addPreviewCheckbox(PlugInFilterRunner, String) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addPreviewCheckbox(PlugInFilterRunner) - Method in class net.imagej.patcher.HeadlessGenericDialog
addPreviewCheckbox(PlugInFilterRunner, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
addPreviousVersion(String, long, String) - Method in class net.imagej.updater.FileObject: Deprecated.
addPreviousVersion(FileObject.Version) - Method in class net.imagej.updater.FileObject
addPreviousVersion(String, long, String, long) - Method in class net.imagej.updater.FileObject
addProgress(Progress) - Method in class net.imagej.updater.util.AbstractProgressable
addProgress(Progress) - Method in interface net.imagej.updater.util.Progressable
addRadioButtonGroup(String, String[], int, int, String) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.

Adds a radio button group.
addRadioButtonGroup(String, String[], int, int, String) - Method in class net.imagej.patcher.HeadlessGenericDialog: Adds a radio button group.
addROIMapping(Object, ROIData) - Method in class net.imagej.omero.DefaultOMEROService
addROIMapping(Object, ROIData) - Method in class net.imagej.omero.legacy.LegacyOMEROService
addROIMapping(Object, ROIData) - Method in interface net.imagej.omero.OMEROService: Add a mapping between a ROIs originating from ImageJ and an OMERO ROIData.
addROIs(List<MaskPredicate<?>>) - Method in interface net.imagej.roi.ROITree: Adds the given list of ROIs to the tree.
addRow(Object...) - Method in class net.imagej.notebook.NotebookTable: Adds a row to the table.
adds - Variable in class net.imagej.ui.swing.updater.DiffView
addSearchBar(Object, IJ1Helper) - Method in class net.imagej.legacy.search.SearchBarHacker: Adds a search bar to the main image frame.
AddShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddShort
AddShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddShort
AddShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddShort
addSlider(String, double, double, double) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addSlider(String, double, double, double, double) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addSlider(String, double, double, double) - Method in class net.imagej.patcher.HeadlessGenericDialog
addSlider(String, double, double, double, double) - Method in class net.imagej.patcher.HeadlessGenericDialog
AddSpecifiedNoiseToDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign: Fills an output Dataset by applying a user calibrated amount of random noise to an input Dataset.
AddSpecifiedNoiseToDataValues() - Constructor for class net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues
addStringField(String, String) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addStringField(String, String, int) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addStringField(String, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
addStringField(String, String, int) - Method in class net.imagej.patcher.HeadlessGenericDialog
addText(String) - Method in class net.imagej.ui.swing.updater.ConflictDialog
addText(String, SimpleAttributeSet) - Method in class net.imagej.ui.swing.updater.ConflictDialog
addTextAreas(String, String, int, int) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
addTextAreas(String, String, int, int) - Method in class net.imagej.patcher.HeadlessGenericDialog
AddToDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign: Fills an output Dataset by adding a user defined constant value to an input Dataset.
AddToDataValues() - Constructor for class net.imagej.plugins.commands.assign.AddToDataValues
addToolListener(ToolListener) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
addToRegionOfInterest(BezierPath, GeneralPathRegionOfInterest) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions
addToRegionOfInterest(PathIterator, GeneralPathRegionOfInterest) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions
addUndoableEditListener(UndoableEditListener) - Method in interface net.imagej.ui.swing.overlay.JHotDrawTool
addUndoableEditListener(UndoableEditListener) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
AddUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedByte
AddUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedByte
AddUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedByte
AddUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedInt
AddUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedInt
AddUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedInt
AddUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedLong
AddUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedLong
AddUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedLong
AddUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedShort
AddUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedShort
AddUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedShort
addUpdateSite(String, String, String, String, long) - Method in class net.imagej.updater.FilesCollection
addUpdateSite(UpdateSite) - Method in class net.imagej.updater.FilesCollection
addUpdateSite(String, UpdateSite) - Method in class net.imagej.updater.FilesCollection
addURL - Static variable in class net.imagej.launcher.ClassLoaderPlus
addValue(int, double) - Method in class net.imagej.legacy.convert.TableWrapper
addVertex(int, RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper: This will always throw an UnsupportedOperationException.
addVertex(int, RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper: This will always throw an UnsupportedOperationException.
addVertex(int, RealLocalizable) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape
addVertices(int, Collection<RealLocalizable>) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper: This will always throw an UnsupportedOperationException.
addVertices(int, Collection<RealLocalizable>) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper: This will always throw an UnsupportedOperationException.
addVertices(int, Collection<RealLocalizable>) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape
addWindow(Frame) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
addWindow(Frame) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
addWindow(Frame) - Method in class net.imagej.updater.util.UpdaterUserInterface
addWindow(Frame) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
adjustmentValueChanged(AdjustmentEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
adjustMinMax(Img<T>, Object) - Static method in class net.imagej.ops.create.img.Imgs: Adjusts the given Img to match the bounds of the specified Interval.
AdminResource - Class in net.imagej.server.resources: Resource for administration.
AdminResource() - Constructor for class net.imagej.server.resources.AdminResource
afterCycle() - Method in class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning
afterCycle() - Method in interface net.imagej.ops.morphology.thin.ThinningStrategy: Called by the ThinningOp after each cycle, and thus exactly getIterationsPerCycle()-times per iteration.
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Cfloat32
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Cfloat64
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Float32
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Float64
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Int16
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Int32
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Int64
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Int8
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Uint16
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Uint32
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Uint64
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Uint8
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.DoG
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Gauss
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Max
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Mean
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Median
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Min
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Sigma
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Variance
ALIASES - Static variable in interface net.imagej.ops.Ops.Image.DistanceTransform
ALIASES - Static variable in interface net.imagej.ops.Ops.Image.Normalize
ALIASES - Static variable in interface net.imagej.ops.Ops.Labeling.CCA
ALIASES - Static variable in interface net.imagej.ops.Ops.Logic.GreaterThan
ALIASES - Static variable in interface net.imagej.ops.Ops.Logic.GreaterThanOrEqual
ALIASES - Static variable in interface net.imagej.ops.Ops.Logic.LessThan
ALIASES - Static variable in interface net.imagej.ops.Ops.Logic.LessThanOrEqual
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Add
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Complement
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Divide
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.LeftShift
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Multiply
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Power
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Remainder
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.RightShift
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Subtract
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.UnsignedRightShift
ALIASES - Static variable in interface net.imagej.ops.Ops.Stats.Mean
ALIASES - Static variable in interface net.imagej.ops.Ops.Transform.Crop
ALIASES - Static variable in interface net.imagej.ops.Ops.Transform.ScaleView
allocateColorTables(ImgPlus<?>) - Static method in class net.imagej.plugins.commands.restructure.RestructureUtils: Modifies an given ImgPlus by allocating 1 color table reference for each plane in the ImgPlus.
allPartialDerivatives(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "partial derivative" operation on all dimensions
allPlanes - Variable in class net.imagej.plugins.commands.assign.MathCommand
alpha - Variable in class net.imagej.ops.filter.vesselness.DefaultFrangi
alphanumeric_both - Static variable in class net.imagej.server.Utils
alphanumeric_lower - Static variable in class net.imagej.server.Utils
analyzeByteCode(InputStream, File) - Static method in class net.imagej.updater.Diff: Inspect the byte code of a class file.
analyzeByteCode(InputStream, boolean) - Static method in class net.imagej.updater.Diff: Analyze the byte code of a class file.
analyzeDependencies(FileObject) - Method in class net.imagej.updater.FilesCollection
and(Predicate<? super RealLocalizable>) - Method in class net.imagej.omero.legacy.text.OMEROText
and(Predicate<? super RealLocalizable>) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
And() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.And
And() - Constructor for class net.imagej.ops.logic.IIToIIOutputII.And
And() - Constructor for class net.imagej.ops.logic.IIToRAIOutputII.And
and(boolean, boolean) - Method in class net.imagej.ops.logic.LogicNamespace
and(T, T) - Method in class net.imagej.ops.logic.LogicNamespace
and(T, T, T) - Method in class net.imagej.ops.logic.LogicNamespace
and(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
and(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
and(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
and(IterableInterval<T>, IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
And() - Constructor for class net.imagej.ops.math.BinaryRealTypeMath.And
and(int, int) - Method in class net.imagej.ops.math.MathNamespace
and(long, long) - Method in class net.imagej.ops.math.MathNamespace
and(O, I1, I2) - Method in class net.imagej.ops.math.MathNamespace
and(Overlay) - Method in class net.imagej.overlay.CompositeOverlay
and(FilesCollection.Filter, FilesCollection.Filter) - Method in class net.imagej.updater.FilesCollection
AndDataValuesWith<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign: Fills an output Dataset by ANDing an input Dataset with a user defined constant value.
AndDataValuesWith() - Constructor for class net.imagej.plugins.commands.assign.AndDataValuesWith
AngleFigure() - Constructor for class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter.AngleFigure
AngleJHotDrawAdapter - Class in net.imagej.ui.swing.overlay: JHotDraw adapter for angle overlays.
AngleJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter
AngleJHotDrawAdapter.AngleFigure - Class in net.imagej.ui.swing.overlay
AngleOverlay - Class in net.imagej.overlay: Represents an angle having a center point and two end points.
AngleOverlay() - Constructor for class net.imagej.overlay.AngleOverlay
AngleOverlay(Context) - Constructor for class net.imagej.overlay.AngleOverlay
AngleOverlay(Context, double[], double[], double[]) - Constructor for class net.imagej.overlay.AngleOverlay
Animation - Class in net.imagej.animation: The Animation class takes care of running an animation along an axis.
Animation(ImageDisplay) - Constructor for class net.imagej.animation.Animation: Creates an animation for the given ImageDisplay.
animation() - Method in class net.imagej.ImageJ: Gets this application context's AnimationService.
AnimationOptions - Class in net.imagej.plugins.commands.animation: Plugin for adjusting options that affect the behavior of animations.
AnimationOptions() - Constructor for class net.imagej.plugins.commands.animation.AnimationOptions
AnimationService - Interface in net.imagej.animation: Interface for service that works with Animations.
AnnotatedSpace<A extends Axis> - Interface in net.imagej.space: A Euclidean space with associated metadata about each dimension of the space.
appAbout() - Method in class net.imagej.legacy.IJ1Helper: Displays the About ImageJ 1.x dialog.
appendColumn() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
appendColumn(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
appendColumns(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
appendColumns(String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
appendRow() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
appendRow(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
appendRows(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
appendRows(String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
apply(Iterable<BitType>, Iterable<T>, T) - Method in class net.imagej.ops.threshold.ThresholdNamespace
apply(IterableInterval<T>, T) - Method in class net.imagej.ops.threshold.ThresholdNamespace
apply(IterableInterval<BitType>, IterableInterval<T>, T) - Method in class net.imagej.ops.threshold.ThresholdNamespace
apply(BitType, Comparable<? super T>, T) - Method in class net.imagej.ops.threshold.ThresholdNamespace
apply(BitType, T, T, Comparator<? super T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
applyChanges() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
ApplyConstantThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.apply: Applies the given threshold value to every element along the given Iterable input.
ApplyConstantThreshold() - Constructor for class net.imagej.ops.threshold.apply.ApplyConstantThreshold
applyIfApproved() - Method in class net.imagej.updater.URLChange
ApplyLookupTable - Class in net.imagej.plugins.commands.misc: Reads a lookup table from a URL.
ApplyLookupTable() - Constructor for class net.imagej.plugins.commands.misc.ApplyLookupTable
applyLUT(ColorTable, ImageDisplay) - Method in class net.imagej.lut.DefaultLUTService
applyLUT(ColorTable, ImageDisplay) - Method in interface net.imagej.lut.LUTService: Applies the given ColorTable to the active view of the specified ImageDisplay.
applyMacro(String) - Method in class net.imagej.legacy.convert.TableWrapper
ApplyManualThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.apply: Applies a threshold to an Img.
ApplyManualThreshold() - Constructor for class net.imagej.ops.threshold.apply.ApplyManualThreshold
applyOrUpload - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
applyPatches() - Method in class net.imagej.patcher.LegacyEnvironment: Applies the configuration patches.
applySitesURLUpdates(FilesCollection, List<URLChange>) - Static method in class net.imagej.updater.util.AvailableSites: Apply prepared changes to update site URLs
ApplyThreshold<I,O> - Interface in net.imagej.ops.threshold: An algorithm for applying a threshold value to an object.
applyThreshold - Variable in class net.imagej.ops.threshold.LocalThresholdMethodHistogram
applyThresholdComp - Variable in class net.imagej.ops.threshold.AbstractApplyThresholdIterable
ApplyThresholdComparable<T> - Class in net.imagej.ops.threshold.apply: Applies a threshold value (the second input) to the given comparable object, producing a BitType set to 1 iff the object compares above the threshold.
ApplyThresholdComparable() - Constructor for class net.imagej.ops.threshold.apply.ApplyThresholdComparable
ApplyThresholdComparator<T> - Class in net.imagej.ops.threshold.apply: Applies a threshold value (the second input) to the given object using the specified comparator, producing a BitType set to 1 iff the object compares above the threshold.
ApplyThresholdComparator() - Constructor for class net.imagej.ops.threshold.apply.ApplyThresholdComparator
ApplyThresholdIterable<T,I extends Iterable<T>,O> - Interface in net.imagej.ops.threshold: Interface for ApplyThreshold implementations that operate over an iteration.
ApplyThresholdMethod - Class in net.imagej.ops.threshold: Ops which computes and apply a global threshold to an Img.
ApplyThresholdMethod.Huang<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethod.IJ1<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethod.Intermodes<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethod.IsoData<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethod.Li<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethod.MaxEntropy<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethod.MaxLikelihood<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethod.Mean<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethod.MinError<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethod.Minimum<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethod.Moments<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethod.Otsu<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethod.Percentile<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethod.RenyiEntropy<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethod.Rosin<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethod.Shanbhag<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethod.Triangle<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethod.Yen<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethodLocal - Class in net.imagej.ops.threshold: Ops that apply a global threshold locally to a RandomAccessibleInterval.
ApplyThresholdMethodLocal.LocalHuangThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethodLocal.LocalIJ1Threshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethodLocal.LocalIntermodesThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethodLocal.LocalIsoDataThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethodLocal.LocalLiThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethodLocal.LocalMaxEntropyThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethodLocal.LocalMaxLikelihoodThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethodLocal.LocalMinErrorThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethodLocal.LocalMinimumThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethodLocal.LocalMomentsThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethodLocal.LocalOtsuThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethodLocal.LocalPercentileThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethodLocal.LocalRenyiEntropyThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethodLocal.LocalRosinThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethodLocal.LocalShanbhagThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethodLocal.LocalTriangleThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
ApplyThresholdMethodLocal.LocalYenThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
appPrefs() - Method in class net.imagej.legacy.IJ1Helper: Handles display of the ImageJ 1.x preferences.
appQuit() - Method in class net.imagej.legacy.IJ1Helper: Handles shutdown of ImageJ 1.x.
AppUtils - Class in net.imagej.util: Useful methods for obtaining details of the ImageJ application environment.
arccos(double) - Method in class net.imagej.ops.math.MathNamespace
arccos(O, I) - Method in class net.imagej.ops.math.MathNamespace
Arccos() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccos
arccosh(O, I) - Method in class net.imagej.ops.math.MathNamespace
Arccosh() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccosh
arccot(O, I) - Method in class net.imagej.ops.math.MathNamespace
Arccot() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccot
arccoth(O, I) - Method in class net.imagej.ops.math.MathNamespace
Arccoth() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccoth
arccsc(O, I) - Method in class net.imagej.ops.math.MathNamespace
Arccsc() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccsc
arccsch(O, I) - Method in class net.imagej.ops.math.MathNamespace
Arccsch() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccsch
arcsec(O, I) - Method in class net.imagej.ops.math.MathNamespace
Arcsec() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arcsec
arcsech(O, I) - Method in class net.imagej.ops.math.MathNamespace
Arcsech() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arcsech
arcsin(double) - Method in class net.imagej.ops.math.MathNamespace
arcsin(O, I) - Method in class net.imagej.ops.math.MathNamespace
Arcsin() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arcsin
arcsinh(O, I) - Method in class net.imagej.ops.math.MathNamespace
Arcsinh() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arcsinh
arctan(double) - Method in class net.imagej.ops.math.MathNamespace
arctan(O, I) - Method in class net.imagej.ops.math.MathNamespace
Arctan() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arctan
arctanh(O, I) - Method in class net.imagej.ops.math.MathNamespace
Arctanh() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arctanh
areAllSelectedFilesUploadable() - Method in class net.imagej.ui.swing.updater.FileTable
areInteger() - Method in class net.imagej.ChannelCollection: Returns true if all channels in the collection can be exactly represented with integer types.
areROIsLoaded() - Method in class net.imagej.omero.legacy.LazyOverlay: Check if the ROIs associated with this Overlay have been downloaded from the OMERO server.
areROIsLoaded() - Method in class net.imagej.omero.roi.LazyROITree
arg0() - Method in class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealInterval
args(Object[], Object...) - Static method in class net.imagej.ops.OpUtils
arrowLineDecoration - Static variable in class net.imagej.options.OptionsOverlay
ArrowTool - Class in net.imagej.plugins.tools: TODO
ArrowTool() - Constructor for class net.imagej.plugins.tools.ArrowTool
ascii(IterableInterval<T>, T, T) - Static method in class net.imagej.ops.image.ascii.DefaultASCII
ascii(IterableInterval<T>) - Method in class net.imagej.ops.image.ImageNamespace: Executes the "ascii" operation on the given arguments.
ascii(IterableInterval<T>, T) - Method in class net.imagej.ops.image.ImageNamespace: Executes the "ascii" operation on the given arguments.
ascii(IterableInterval<T>, T, T) - Method in class net.imagej.ops.image.ImageNamespace: Executes the "ascii" operation on the given arguments.
ascii - Variable in class net.imagej.plugins.commands.app.EasterEgg
asDouble(T) - Method in interface net.imagej.types.DataType: Converts value to a double.
asDouble(ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
asDouble(Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger
asDouble(ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger
asDouble(UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger
asDouble(BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger
asDouble(FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat
asDouble(IntType) - Method in class net.imagej.types.DataType32BitSignedInteger
asDouble(UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger
asDouble(ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
asDouble(DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat
asDouble(LongType) - Method in class net.imagej.types.DataType64BitSignedInteger
asDouble(ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger
asDouble(UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger
asDouble(NativeBoolType) - Method in class net.imagej.types.DataTypeBoolean
asDouble(BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
asDouble(PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
asDouble(UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
askChoice(String[]) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
asLong(T) - Method in interface net.imagej.types.DataType: Converts value to a long.
asLong(ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
asLong(Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger
asLong(ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger
asLong(UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger
asLong(BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger
asLong(FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat
asLong(IntType) - Method in class net.imagej.types.DataType32BitSignedInteger
asLong(UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger
asLong(ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
asLong(DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat
asLong(LongType) - Method in class net.imagej.types.DataType64BitSignedInteger
asLong(ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger
asLong(UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger
asLong(NativeBoolType) - Method in class net.imagej.types.DataTypeBoolean
asLong(BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
asLong(PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
asLong(UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
asm(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
asm(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
assign(T, T) - Method in class net.imagej.ops.math.MathNamespace
Assign() - Constructor for class net.imagej.ops.math.NullaryNumericTypeMath.Assign
assignInputs(Module, Object...) - Method in class net.imagej.ops.DefaultOpMatchingService
assignInputs(Module, Object...) - Method in interface net.imagej.ops.OpMatchingService: Assigns arguments into the given module's inputs.
asType(ImgPlus<?>, T) - Method in class net.imagej.DefaultImgPlusService
asType(ImgPlus<?>, T) - Method in interface net.imagej.ImgPlusService: Given an ImgPlus of unknown type this returns a typed ImgPlus of a given type.
atan2(PreciseFixedFloatType, PreciseFixedFloatType) - Static method in class net.imagej.types.PreciseFixedFloatType
atLineStart - Variable in class net.imagej.updater.util.SkipHashedLines
attachResultsTable() - Static method in class net.imagej.legacy.Macros
AttachROIPostprocessor - Class in net.imagej.omero.legacy: A post-processor which checks if there are ROIs in the CacheService (put there by CacheROIPostprocessor), and checks if they have specific attachment directives.
AttachROIPostprocessor() - Constructor for class net.imagej.omero.legacy.AttachROIPostprocessor
Attribute(int) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer.Attribute
authors - Variable in class net.imagej.updater.FileObject
AutoContrast - Class in net.imagej.plugins.commands.display: Plugin that auto-thresholds each channel.
AutoContrast() - Constructor for class net.imagej.plugins.commands.display.AutoContrast
autoGenerateConfigFile(File) - Method in class imagej.patcher.LegacyHooks: Deprecated.
autoGenerateConfigFile(File, File, String, String, StringBuilder) - Method in class imagej.patcher.LegacyHooks: Deprecated.
autoGenerateConfigFile(File) - Method in class net.imagej.patcher.LegacyHooks
autoGenerateConfigFile(File, File, String, String, StringBuilder) - Method in class net.imagej.patcher.LegacyHooks
autoscale(int) - Method in interface net.imagej.display.DatasetView: Autoscales the display range to match the data range, for the given channel.
autoscale(int) - Method in class net.imagej.display.DefaultDatasetView
AutoscaleMethod<T extends RealType<T>> - Interface in net.imagej.autoscale: An algorithm for computing suitable display ranges from interval data.
AutoscaleService - Interface in net.imagej.autoscale: Interface for service that works with autoscale algorithms.
autoThreshold() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
AvailableSites - Class in net.imagej.updater.util: Utility class for parsing the list of available update sites.
AvailableTensorFlowVersions - Class in net.imagej.tensorflow.ui: Utility class providing a hardcoded list of available native TensorFlow library versions which can be downloaded from the google servers.
AvailableTensorFlowVersions() - Constructor for class net.imagej.tensorflow.ui.AvailableTensorFlowVersions
averageScale(double, double) - Method in class net.imagej.axis.AbstractCalibratedAxis
averageScale(double, double) - Method in interface net.imagej.axis.CalibratedAxis: Returns the average scale between two raw value coordinates along an axis.
averageScale(int) - Method in class net.imagej.display.DefaultImageDisplay
averageScale(int) - Method in class net.imagej.interval.AbstractCalibratedRealInterval
averageScale(int) - Method in class net.imagej.interval.CombinedCalibratedRealInterval
averageScale(int) - Method in interface net.imagej.space.CalibratedSpace: Returns the average scale along the given axis, for some reasonable interval.
AWTRenderingService - Class in net.imagej.ui.awt: AWT-based implementation of text rendering service.
AWTRenderingService() - Constructor for class net.imagej.ui.awt.AWTRenderingService
AWTScreenCaptureService - Class in net.imagej.ui.awt: An AWT implementation of the ScreenCaptureService interface.
AWTScreenCaptureService() - Constructor for class net.imagej.ui.awt.AWTScreenCaptureService
AWTTextRenderer - Class in net.imagej.ui.awt: The AWT implementation of the TextRenderer interface.
AWTTextRenderer() - Constructor for class net.imagej.ui.awt.AWTTextRenderer
Axes - Class in net.imagej.axis: An extensible enumeration of dimensional AxisTypes.
axes(CalibratedAxis[]) - Method in class net.imagej.DefaultDataset
axes(CalibratedAxis[]) - Method in class net.imagej.display.DefaultImageDisplay
axes(A[]) - Method in class net.imagej.space.AbstractAnnotatedSpace
axes(A[]) - Method in interface net.imagej.space.AnnotatedSpace: Copies the space's axes into the given array.
axes(A[]) - Method in class net.imagej.space.CombinedSpace
Axis - Interface in net.imagej.axis: A dimensional axis of an AnnotatedSpace.
axis(AxisType) - Method in interface net.imagej.Dataset: Gets the axis of the given type.
axis(int) - Method in class net.imagej.DefaultDataset
axis(int) - Method in class net.imagej.display.DefaultImageDisplay
axis(int) - Method in class net.imagej.space.AbstractAnnotatedSpace
axis(int) - Method in interface net.imagej.space.AnnotatedSpace: Gets the axis associated with the given dimension of the space.
axis(int) - Method in class net.imagej.space.CombinedSpace
AxisActivatedEvent - Class in net.imagej.display.event: An event indicating an axis has become the active one.
AxisActivatedEvent(ImageDisplay, AxisType) - Constructor for class net.imagej.display.event.AxisActivatedEvent
axisChanged() - Method in class net.imagej.plugins.commands.animation.AnimationOptions: Updates the first and last values when the axis changes.
axisChanged() - Method in class net.imagej.plugins.commands.restructure.DeleteAxis: Updates the last value when the axis changes.
axisChanged() - Method in class net.imagej.plugins.commands.restructure.ReorderAxis
AxisEvent - Class in net.imagej.display.event: An event indicating that one of an ImageDisplay's dimensional axes has changed.
AxisEvent(ImageDisplay) - Constructor for class net.imagej.display.event.AxisEvent
AxisEvent(ImageDisplay, AxisType) - Constructor for class net.imagej.display.event.AxisEvent
AxisPositionBackward - Class in net.imagej.plugins.commands.axispos: Updates the current display to show the previous plane along an axis
AxisPositionBackward() - Constructor for class net.imagej.plugins.commands.axispos.AxisPositionBackward
AxisPositionEvent - Class in net.imagej.display.event: An event indicating that a display's dimensional position has changed.
AxisPositionEvent(ImageDisplay) - Constructor for class net.imagej.display.event.AxisPositionEvent
AxisPositionEvent(ImageDisplay, AxisType) - Constructor for class net.imagej.display.event.AxisPositionEvent
AxisPositionForward - Class in net.imagej.plugins.commands.axispos: Updates the current display to show the next plane along an axis
AxisPositionForward() - Constructor for class net.imagej.plugins.commands.axispos.AxisPositionForward
AxisPositionHandler - Class in net.imagej.plugins.tools: Handles keyboard and mouse wheel operations that change the dimensional position.
AxisPositionHandler() - Constructor for class net.imagej.plugins.tools.AxisPositionHandler
AxisSubrange - Class in net.imagej.sampler: An AxisSubrange defines a set of position indices using various constructors.
AxisSubrange(long) - Constructor for class net.imagej.sampler.AxisSubrange: Create an AxisSubrange from a single value.
AxisSubrange(long, long) - Constructor for class net.imagej.sampler.AxisSubrange: Create an AxisSubrange from one position to another position and everything in between.
AxisSubrange(long, long, long) - Constructor for class net.imagej.sampler.AxisSubrange: Create an AxisSubrange from one position to another position stepping by a given value.
AxisSubrange(ImageDisplay, AxisType, String, boolean) - Constructor for class net.imagej.sampler.AxisSubrange: Create an AxisSubrange from a String definition.
AxisType - Interface in net.imagej.axis: A dimensional axis type, for describing the dimensions of a TypedSpace.

B

b() - Method in class net.imagej.axis.Variable2Axis
B(long[], int) - Static method in class net.imagej.ops.threshold.Thresholds: The partial sum B from C.
backgroundChange() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
base64(RenderedImage) - Static method in class net.imagej.notebook.Images
BASE_PRIORITY - Static variable in class net.imagej.plugins.tools.AbstractColorTool
Batch() - Constructor for class net.imagej.legacy.LegacyCommandline.Batch
bck(int) - Method in class net.imagej.display.AbstractDataView
bck(int) - Method in class net.imagej.display.DefaultImageDisplay
bck(int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
bck() - Method in class net.imagej.Position: Moves the Position backward by one step.
bck(int) - Method in class net.imagej.Position: Moves the Position backward one step in specified dimension.
BCViaBC<I1 extends DI1,I2 extends DI2,O extends DO,DI1,DI2,DO> - Class in net.imagej.ops.special.chain: Base class for BinaryComputerOps that delegate to other BinaryComputerOps.
BCViaBC() - Constructor for class net.imagej.ops.special.chain.BCViaBC
BCViaBCAllSame<IO> - Class in net.imagej.ops.special.chain: Base class for BinaryComputerOps that delegate to other BinaryComputerOps with all matching types (inputs same as output).
BCViaBCAllSame() - Constructor for class net.imagej.ops.special.chain.BCViaBCAllSame
BCViaBCSameIO<I1,I2,O> - Class in net.imagej.ops.special.chain: Base class for BinaryComputerOps that delegate to other BinaryComputerOps with the same input and output types.
BCViaBCSameIO() - Constructor for class net.imagej.ops.special.chain.BCViaBCSameIO
Benchmark - Class in net.imagej.plugins.commands.misc: This is a placeholder command for as yet unfinished Benchmark command.
Benchmark() - Constructor for class net.imagej.plugins.commands.misc.Benchmark
beta - Variable in class net.imagej.ops.filter.vesselness.DefaultFrangi
BezierPathFunctions - Class in net.imagej.ui.swing.overlay: Utility functions for GeneralPathJHotDrawAdapter.
BezierPathFunctions() - Constructor for class net.imagej.ui.swing.overlay.BezierPathFunctions
BezierPathFunctions.OP - Enum in net.imagej.ui.swing.overlay
BFViaBC<I1 extends DI1,I2 extends DI2,O extends DO,DI1,DI2,DO> - Class in net.imagej.ops.special.chain: Base class for BinaryFunctionOps that delegate to BinaryComputerOps.
BFViaBC() - Constructor for class net.imagej.ops.special.chain.BFViaBC
BFViaBCAllSame<IO> - Class in net.imagej.ops.special.chain: Base class for BinaryFunctionOps that delegate to BinaryComputerOps with all matching types (inputs same as output).
BFViaBCAllSame() - Constructor for class net.imagej.ops.special.chain.BFViaBCAllSame
BFViaBCSameIO<I1,I2,O> - Class in net.imagej.ops.special.chain: Base class for BinaryFunctionOps that delegate to BinaryComputerOps with the same input and output types.
BFViaBCSameIO() - Constructor for class net.imagej.ops.special.chain.BFViaBCSameIO
BFViaBF<I1 extends DI1,I2 extends DI2,O,DI1,DI2,DO extends O> - Class in net.imagej.ops.special.chain: Base class for BinaryFunctionOps that delegate to other BinaryFunctionOps.
BFViaBF() - Constructor for class net.imagej.ops.special.chain.BFViaBF
BFViaBFAllSame<IO> - Class in net.imagej.ops.special.chain: Base class for BinaryFunctionOps that delegate to other BinaryFunctionOps with all matching types (inputs same as output).
BFViaBFAllSame() - Constructor for class net.imagej.ops.special.chain.BFViaBFAllSame
BFViaBFSameIO<I1,I2,O> - Class in net.imagej.ops.special.chain: Base class for BinaryFunctionOps that delegate to other BinaryFunctionOps with the same input and output types.
BFViaBFSameIO() - Constructor for class net.imagej.ops.special.chain.BFViaBFSameIO
BgColorTool - Class in net.imagej.plugins.tools: The tool that displays the current background color.
BgColorTool() - Constructor for class net.imagej.plugins.tools.BgColorTool
BHCFViaBC<I1 extends DI1,I2 extends DI2,O extends DO,DI1,DI2,DO> - Class in net.imagej.ops.special.chain: Base class for BinaryHybridCFs that delegate to BinaryComputerOps.
BHCFViaBC() - Constructor for class net.imagej.ops.special.chain.BHCFViaBC
BHCFViaBCAllSame<IO> - Class in net.imagej.ops.special.chain: Base class for BinaryHybridCFs that delegate to BinaryComputerOps with all matching types (inputs same as output).
BHCFViaBCAllSame() - Constructor for class net.imagej.ops.special.chain.BHCFViaBCAllSame
BHCFViaBCSameIO<I1,I2,O> - Class in net.imagej.ops.special.chain: Base class for BinaryHybridCFs that delegate to BinaryComputerOps with the same input and output types.
BHCFViaBCSameIO() - Constructor for class net.imagej.ops.special.chain.BHCFViaBCSameIO
BHCFViaBHCF<I1 extends DI1,I2 extends DI2,O,DI1,DI2> - Class in net.imagej.ops.special.chain: Base class for BinaryHybridCFs that delegate to BinaryHybridCFs.
BHCFViaBHCF() - Constructor for class net.imagej.ops.special.chain.BHCFViaBHCF
BHCFViaBHCFAllSame<IO> - Class in net.imagej.ops.special.chain: Base class for BinaryHybridCFs that delegate to BinaryHybridCFs with all matching types (inputs same as output).
BHCFViaBHCFAllSame() - Constructor for class net.imagej.ops.special.chain.BHCFViaBHCFAllSame
BHCFViaBHCFSameIO<I1,I2,O> - Class in net.imagej.ops.special.chain: Base class for BinaryHybridCFs that delegate to BinaryHybridCFs with the same input and output types.
BHCFViaBHCFSameIO() - Constructor for class net.imagej.ops.special.chain.BHCFViaBHCFSameIO
BIG_FONT_SIZE - Static variable in class net.imagej.ui.swing.updater.DiffView
bigBold - Variable in class net.imagej.ui.swing.updater.DiffView
BigComplex - Class in net.imagej.types: A complex number that stores values in BigDecimal (arbitrary) precision.
BigComplex() - Constructor for class net.imagej.types.BigComplex: Default constructor: value = (0,0).
BigComplex(long, long) - Constructor for class net.imagej.types.BigComplex: Constructor from longs.
BigComplex(double, double) - Constructor for class net.imagej.types.BigComplex: Constructor from doubles.
BigComplex(BigInteger, BigInteger) - Constructor for class net.imagej.types.BigComplex: Constructor from BigIntegers.
BigComplex(BigDecimal, BigDecimal) - Constructor for class net.imagej.types.BigComplex: Constructor from BigDecimals.
BigComplex(String, String) - Constructor for class net.imagej.types.BigComplex: Constructor from Strings.
bilateral(RandomAccessibleInterval<O>, RandomAccessibleInterval, double, double, int) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "bilateral" filter on the given arguments.
bimodalTest(double[]) - Static method in class net.imagej.ops.threshold.Thresholds
Binarize<T extends RealType<T>> - Class in net.imagej.plugins.commands.binary: Creates or updates a mask Dataset of type BitType.
Binarize() - Constructor for class net.imagej.plugins.commands.binary.Binarize
binary(OpEnvironment, Class<? extends Op>, Class<O>, Class<I1>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.computer.Computers: Gets the best BinaryComputerOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, Class<O>, I1, I2, Object...) - Static method in class net.imagej.ops.special.computer.Computers: Gets the best BinaryComputerOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, O, I1, I2, Object...) - Static method in class net.imagej.ops.special.computer.Computers: Gets the best BinaryComputerOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, Class<O>, Class<I1>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.function.Functions: Gets the best BinaryFunctionOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, Class<O>, I1, I2, Object...) - Static method in class net.imagej.ops.special.function.Functions: Gets the best BinaryFunctionOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, Class<O>, Object...) - Static method in class net.imagej.ops.special.inplace.Inplaces: Gets the best BinaryInplaceOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, O, O, Object...) - Static method in class net.imagej.ops.special.inplace.Inplaces: Gets the best BinaryInplaceOp implementation for the given types and arguments, populating its inputs.
binary1(OpEnvironment, Class<? extends Op>, Class<O>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.inplace.Inplaces: Gets the best BinaryInplace1Op implementation for the given types and arguments, populating its inputs.
binary1(OpEnvironment, Class<? extends Op>, O, I2, Object...) - Static method in class net.imagej.ops.special.inplace.Inplaces: Gets the best BinaryInplace1Op implementation for the given types and arguments, populating its inputs.
binaryCF(OpEnvironment, Class<? extends Op>, Class<O>, Class<I1>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids: Gets the best BinaryHybridCF implementation for the given types and arguments, populating its inputs.
binaryCF(OpEnvironment, Class<? extends Op>, Class<O>, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids: Gets the best BinaryHybridCF implementation for the given types and arguments, populating its inputs.
binaryCF(OpEnvironment, Class<? extends Op>, O, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids: Gets the best BinaryHybridCF implementation for the given types and arguments, populating its inputs.
binaryCFI(OpEnvironment, Class<? extends Op>, Class<O>, Class, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids: Gets the best BinaryHybridCFI implementation for the given types and arguments, populating its inputs.
binaryCFI(OpEnvironment, Class<? extends Op>, Class<O>, I, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids: Gets the best BinaryHybridCFI implementation for the given types and arguments, populating its inputs.
binaryCFI(OpEnvironment, Class<? extends Op>, O, I, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids: Gets the best BinaryHybridCFI implementation for the given types and arguments, populating its inputs.
binaryCFI1(OpEnvironment, Class<? extends Op>, Class<O>, Class<I1>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids: Gets the best BinaryHybridCFI1 implementation for the given types and arguments, populating its inputs.
binaryCFI1(OpEnvironment, Class<? extends Op>, Class<O>, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids: Gets the best BinaryHybridCFI1 implementation for the given types and arguments, populating its inputs.
binaryCFI1(OpEnvironment, Class<? extends Op>, O, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids: Gets the best BinaryHybridCFI1 implementation for the given types and arguments, populating its inputs.
binaryCI(OpEnvironment, Class<? extends Op>, Class<O>, Class, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids: Gets the best BinaryHybridCI implementation for the given types and arguments, populating its inputs.
binaryCI(OpEnvironment, Class<? extends Op>, Class<O>, I, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids: Gets the best BinaryHybridCI implementation for the given types and arguments, populating its inputs.
binaryCI(OpEnvironment, Class<? extends Op>, O, I, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids: Gets the best BinaryHybridCI implementation for the given types and arguments, populating its inputs.
binaryCI1(OpEnvironment, Class<? extends Op>, Class<O>, Class<I1>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids: Gets the best BinaryHybridCI1 implementation for the given types and arguments, populating its inputs.
binaryCI1(OpEnvironment, Class<? extends Op>, Class<O>, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids: Gets the best BinaryHybridCI1 implementation for the given types and arguments, populating its inputs.
binaryCI1(OpEnvironment, Class<? extends Op>, O, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids: Gets the best BinaryHybridCI1 implementation for the given types and arguments, populating its inputs.
BinaryCompositeMaskPredicateToShapeRoiConverter - Class in net.imagej.legacy.convert.roi: Converts BinaryCompositeMaskPredicate to ShapeRoi.
BinaryCompositeMaskPredicateToShapeRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter
binaryComputer(OpEnvironment, Class<? extends Op>, IterableInterval<T>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs
binaryComputer(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
binaryComputer(OpEnvironment, Class<? extends Op>, I1, I2, Object...) - Static method in class net.imagej.ops.special.chain.RTs
BinaryComputerOp<I1,I2,O> - Interface in net.imagej.ops.special.computer: A binary computer computes a result from two given inputs, storing it into the specified output reference.
binaryFunction(OpEnvironment, Class<? extends Op>, IterableInterval<T>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs
binaryFunction(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
binaryFunction(OpEnvironment, Class<? extends Op>, I1, I2, Object...) - Static method in class net.imagej.ops.special.chain.RTs
BinaryFunctionOp<I1,I2,O> - Interface in net.imagej.ops.special.function: A binary function calculates a result from two given inputs, returning it as a new object.
binaryHybrid(OpEnvironment, Class<? extends Op>, IterableInterval<T>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs
binaryHybrid(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
binaryHybrid(OpEnvironment, Class<? extends Op>, I1, I2, Object...) - Static method in class net.imagej.ops.special.chain.RTs
BinaryHybridCF<I1,I2,O> - Interface in net.imagej.ops.special.hybrid: A hybrid binary operation which can be used as a BinaryComputerOp or BinaryFunctionOp.
BinaryHybridCFI<I,O extends I> - Interface in net.imagej.ops.special.hybrid: A hybrid binary operation which can be used as a BinaryComputerOp, BinaryFunctionOp or BinaryInplaceOp.
BinaryHybridCFI1<I1,I2,O extends I1> - Interface in net.imagej.ops.special.hybrid: A hybrid binary operation which can be used as a BinaryComputerOp, BinaryFunctionOp or BinaryInplace1Op.
BinaryHybridCI<I,O extends I> - Interface in net.imagej.ops.special.hybrid: A hybrid binary operation which can be used as a BinaryComputerOp or BinaryInplaceOp.
BinaryHybridCI1<I1,I2,O extends I1> - Interface in net.imagej.ops.special.hybrid: A hybrid binary operation which can be used as a BinaryComputerOp, or BinaryInplace1Op.
BinaryInplace1OnlyOp<A,I> - Interface in net.imagej.ops.special.inplace: A BinaryInplace1Op which is not a hybrid.
BinaryInplace1Op<I1,I2,O extends I1> - Interface in net.imagej.ops.special.inplace: A binary inplace operation which computes a result from two given arguments, storing it back into the first input (i.e., mutating it).
BinaryInplaceOnlyOp<A> - Interface in net.imagej.ops.special.inplace: A BinaryInplaceOp which is not a hybrid.
BinaryInplaceOp<I,O extends I> - Interface in net.imagej.ops.special.inplace: A binary inplace operation is an op which computes a result from two given arguments, storing it either the first or second argument (i.e., mutating it).
BinaryInput<I1,I2> - Interface in net.imagej.ops.special: Interface for objects with two typed input parameters.
BinaryMaskOverlay> - Class in net.imagej.overlay: TODO
BinaryMaskOverlay() - Constructor for class net.imagej.overlay.BinaryMaskOverlay
BinaryMaskOverlay(Context) - Constructor for class net.imagej.overlay.BinaryMaskOverlay
BinaryMaskOverlay(Context, BinaryMaskRegionOfInterest<U, V>) - Constructor for class net.imagej.overlay.BinaryMaskOverlay
BinaryOp<I1,I2,O> - Interface in net.imagej.ops.special: A binary operation computes a result from two given inputs.
BinaryOutputFactory<I1,I2,O> - Interface in net.imagej.ops.special: Factory which creates a typed output object given two typed inputs.
BinaryRealTypeMath - Class in net.imagej.ops.math: Binary Ops of the math namespace which operate on RealTypes.
BinaryRealTypeMath.Add<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math: Sets the real component of an output real number to the addition of the real components of two input real numbers.
BinaryRealTypeMath.And<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math: Sets the real component of an output real number to the logical AND of the real component of two input real numbers.
BinaryRealTypeMath.Divide<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math: Sets the real component of an output real number to the division of the real component of two input real numbers.
BinaryRealTypeMath.Multiply<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math: Sets the real component of an output real number to the multiplication of the real component of two input real numbers.
BinaryRealTypeMath.Or<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math: Sets the real component of an output real number to the logical OR of the real component of two input real numbers.
BinaryRealTypeMath.Subtract<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math: Sets the real component of an output real number to the subtraction between the real component of two input real numbers.
BinaryRealTypeMath.Xor<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math: Sets the real component of an output real number to the logical XOR of the real component of two input real numbers.
Binner<T extends RealType<T>> - Class in net.imagej.plugins.commands.imglib: Reduces the size of an image by integral scale factors.
Binner() - Constructor for class net.imagej.plugins.commands.imglib.Binner
BIOViaBI<A extends DO,DI,DO extends DI> - Class in net.imagej.ops.special.chain: Base class for BinaryInplaceOnlyOps that delegate to BinaryInplaceOps.
BIOViaBI() - Constructor for class net.imagej.ops.special.chain.BIOViaBI
BIOViaBISame<A> - Class in net.imagej.ops.special.chain: Base class for BinaryInplaceOnlyOps that delegate to BinaryInplaceOps with all matching types (inputs same as output).
BIOViaBISame() - Constructor for class net.imagej.ops.special.chain.BIOViaBISame
Bit() - Constructor for class net.imagej.ops.convert.ConvertImages.Bit
bit(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
bit(Img<BitType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
bit(C) - Method in class net.imagej.ops.convert.ConvertNamespace
bit(BitType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
bit(T) - Method in class net.imagej.ops.convert.ConvertNamespace
bit(BitType, T) - Method in class net.imagej.ops.convert.ConvertNamespace
bit(long) - Static method in class net.imagej.ops.convert.Types
bit(double) - Static method in class net.imagej.ops.convert.Types
bit(boolean) - Static method in class net.imagej.ops.convert.Types
bit(BigInteger) - Static method in class net.imagej.ops.convert.Types
bitCount() - Method in interface net.imagej.types.DataType: Number of bits of information required to represent data in the type.
bitCount() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
bitCount() - Method in class net.imagej.types.DataType12BitUnsignedInteger
bitCount() - Method in class net.imagej.types.DataType16BitSignedInteger
bitCount() - Method in class net.imagej.types.DataType16BitUnsignedInteger
bitCount() - Method in class net.imagej.types.DataType1BitUnsignedInteger
bitCount() - Method in class net.imagej.types.DataType32BitSignedFloat
bitCount() - Method in class net.imagej.types.DataType32BitSignedInteger
bitCount() - Method in class net.imagej.types.DataType32BitUnsignedInteger
bitCount() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
bitCount() - Method in class net.imagej.types.DataType64BitSignedFloat
bitCount() - Method in class net.imagej.types.DataType64BitSignedInteger
bitCount() - Method in class net.imagej.types.DataType8BitSignedInteger
bitCount() - Method in class net.imagej.types.DataType8BitUnsignedInteger
bitCount() - Method in class net.imagej.types.DataTypeBoolean
bitCount() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
bitCount() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
bitCount() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
BitTypeVertexInterpolator - Class in net.imagej.ops.geom.geom3d.mesh: The BitTypeVertexInterpolator returns the point which is in the middle of the two input vertices.
BitTypeVertexInterpolator() - Constructor for class net.imagej.ops.geom.geom3d.mesh.BitTypeVertexInterpolator
bitwiseAnd(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
bitwiseOr(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
BLACK - Static variable in class net.imagej.plugins.commands.binary.Binarize
blackTopHat(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
blackTopHat(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
blankLine() - Method in class net.imagej.ui.swing.updater.FileDetails
BLUE - Static variable in class net.imagej.display.ColorTables
bold - Variable in class net.imagej.ui.swing.updater.ConflictDialog
bold - Variable in class net.imagej.ui.swing.updater.DiffView
bold(String) - Method in class net.imagej.ui.swing.updater.FileDetails
bold - Variable in class net.imagej.ui.swing.updater.FileTable
BooleanAnd() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanAnd
BooleanEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanEqual
BooleanNot() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanNot
BooleanNotEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanNotEqual
BooleanOr() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanOr
BooleanTypeLogic - Class in net.imagej.ops.logic: Logic operations with BooleanType as output.
BooleanTypeLogic.And<T extends BooleanType<T>> - Class in net.imagej.ops.logic: Performs logical and (&&) between two BooleanTypes.
BooleanTypeLogic.ComparableGreaterThan,O extends BooleanType<O>> - Class in net.imagej.ops.logic: Performs greater-than (>) between two Comparables.
BooleanTypeLogic.ComparableGreaterThanOrEqual,O extends BooleanType<O>> - Class in net.imagej.ops.logic: Performs greater-than-or-equal (>=) between two Comparables.
BooleanTypeLogic.ComparableLessThan,O extends BooleanType<O>> - Class in net.imagej.ops.logic: Performs less-than (<) between two Comparables.
BooleanTypeLogic.ComparableLessThanOrEqual,O extends BooleanType<O>> - Class in net.imagej.ops.logic: Performs less-than-or-equal (<=) between two Comparables.
BooleanTypeLogic.Not<T extends BooleanType<T>> - Class in net.imagej.ops.logic: Performs logical not (!) on a BooleanType.
BooleanTypeLogic.ObjectsEqual<O extends BooleanType<O>> - Class in net.imagej.ops.logic: Performs equals (==) between two Objects.
BooleanTypeLogic.ObjectsNotEqual<O extends BooleanType<O>> - Class in net.imagej.ops.logic: Performs not-equals (!=) between two Objects.
BooleanTypeLogic.Or<T extends BooleanType<T>> - Class in net.imagej.ops.logic: Performs logical or (||) between two BooleanTypes.
BooleanTypeLogic.Xor<T extends BooleanType<T>> - Class in net.imagej.ops.logic: Performs logical xor (^) between two BooleanTypes.
BooleanXor() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanXor
BOOTSTRAP_REMOTE_URL - Static variable in class net.imagej.launcher.RemoteUpdater
bothInstallAndUninstall(FileObject, FilesCollection, FilesCollection) - Method in class net.imagej.updater.Conflicts
bottomPanel - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
bottomPanel2 - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
boundaryPixelCount(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
boundaryPixelCount(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
boundaryPixelCountConvexHull(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
boundaryPixelCountConvexHull(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
boundaryPixelCountConvexHull(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
boundaryPixelCountConvexHull(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
boundarySize(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
boundarySize(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
boundarySize(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
boundarySize(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
boundarySizeConvexHull(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
boundarySizeConvexHull(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
boundarySizeConvexHull(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
boundarySizeConvexHull(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
boundaryType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
boundaryType() - Method in class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper
boundaryType() - Method in class net.imagej.omero.legacy.text.OMEROText
boundaryType() - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
boundaryType() - Method in class net.imagej.omero.roi.AbstractOMERORealMaskRealInterval
boundaryType() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMask
boundaryType() - Method in class net.imagej.omero.roi.project.ProjectedOMERORealMask
boundaryType(S, OMEROSession, LogService) - Static method in class net.imagej.omero.roi.ROIConverters: Gets the boundary behavior of this shape.
boundingBox(Mesh) - Static method in class net.imagej.mesh.Meshes
boundingBox(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
bounds - Variable in class net.imagej.ui.swing.overlay.PointFigure
BoxCount> - Class in net.imagej.ops.topology: An N-dimensional version of fixed-grid box counting algorithm that can be used to estimate the fractal dimension of an interval
BoxCount() - Constructor for class net.imagej.ops.topology.BoxCount
boxCount(RandomAccessibleInterval) - Method in class net.imagej.ops.topology.TopologyNamespace
boxCount(RandomAccessibleInterval, Long) - Method in class net.imagej.ops.topology.TopologyNamespace
boxCount(RandomAccessibleInterval, Long, Long) - Method in class net.imagej.ops.topology.TopologyNamespace
boxCount(RandomAccessibleInterval, Long, Long, Double) - Method in class net.imagej.ops.topology.TopologyNamespace
boxCount(RandomAccessibleInterval, Long, Long, Double, Long) - Method in class net.imagej.ops.topology.TopologyNamespace
boxivity(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
boxivity(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
boxivity(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
boxivity(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
boxLayoutPanel(int) - Static method in class net.imagej.ui.swing.updater.SwingTools
BoxToRoiConverter - Class in net.imagej.legacy.convert.roi.box: Converts a Box to a Roi.
BoxToRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.box.BoxToRoiConverter
BoxWrapper - Class in net.imagej.legacy.convert.roi.box: A Roi with an associated WritableBox.
BoxWrapper(WritableBox) - Constructor for class net.imagej.legacy.convert.roi.box.BoxWrapper
braces(Object[]) - Method in class net.imagej.ops.eval.OpEvaluator
brackets(Object[]) - Method in class net.imagej.ops.eval.OpEvaluator
BrightnessContrast<T extends RealType<T>> - Class in net.imagej.plugins.commands.display.interactive: Plugin that sets the minimum and maximum for scaling of display values.
BrightnessContrast() - Constructor for class net.imagej.plugins.commands.display.interactive.BrightnessContrast
brightnessContrastChanged() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast: Called when brightness or contrast changes.
bufferedImage(Dataset) - Static method in class net.imagej.notebook.Images: Converts the given Dataset to a BufferedImage.
bufferedImage(RandomAccessibleInterval<T>) - Static method in class net.imagej.notebook.Images: Converts the given RandomAccessibleInterval to a BufferedImage.
bufferedImage(RandomAccessibleInterval<T>, double, double) - Static method in class net.imagej.notebook.Images: Converts the given RandomAccessibleInterval to a BufferedImage.
bufferedImage(RandomAccessibleInterval<T>, double[], double[]) - Static method in class net.imagej.notebook.Images: Converts the given RandomAccessibleInterval to a BufferedImage.
bufferedImage(RandomAccessibleInterval<T>, int, int, int, NotebookService.ValueScaling, long...) - Static method in class net.imagej.notebook.Images: Converts the given RandomAccessibleInterval to a BufferedImage.
bufferedImage(RandomAccessibleInterval<T>, int, int, int, double[], double[], long...) - Static method in class net.imagej.notebook.Images: Converts the given RandomAccessibleInterval to a BufferedImage.
BufferedImageToHTMLConverter - Class in net.imagej.notebook.image: Converter from BufferedImage to HTMLObject.
BufferedImageToHTMLConverter() - Constructor for class net.imagej.notebook.image.BufferedImageToHTMLConverter
BufferFactory<A,B> - Interface in net.imagej.ops.join: An object which can produce buffers using a UnaryOutputFactory.
BufferMesh - Class in net.imagej.mesh.nio: Mesh implemented using Buffer objects.
BufferMesh(int, int) - Constructor for class net.imagej.mesh.nio.BufferMesh
BufferMesh(int, int, boolean) - Constructor for class net.imagej.mesh.nio.BufferMesh
BufferMesh(int, int, Function<Integer, ByteBuffer>) - Constructor for class net.imagej.mesh.nio.BufferMesh
BufferMesh(FloatBuffer, FloatBuffer, FloatBuffer, IntBuffer, FloatBuffer) - Constructor for class net.imagej.mesh.nio.BufferMesh
BufferMesh.Triangles - Class in net.imagej.mesh.nio
BufferMesh.Vertices - Class in net.imagej.mesh.nio
button(String, String, ActionListener, Container) - Static method in class net.imagej.ui.swing.updater.SwingTools
ButtonDemo - Class in net.imagej.plugins.commands.debug: This command is example code that shows how one can make @Parameters that are Buttons which can fire callbacks when pressed.
ButtonDemo() - Constructor for class net.imagej.plugins.commands.debug.ButtonDemo
ByteCodeAnalyzer - Class in net.imagej.updater.util: An analyzer to find out which .jar files a given .jar file depends on.
ByteCodeAnalyzer(byte[]) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer
ByteCodeAnalyzer(byte[], boolean) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer
ByteCodeAnalyzer(byte[], ByteCodeAnalyzer.Mode) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer
ByteCodeAnalyzer.Attribute - Class in net.imagej.updater.util
ByteCodeAnalyzer.Field - Class in net.imagej.updater.util
ByteCodeAnalyzer.Interface - Class in net.imagej.updater.util
ByteCodeAnalyzer.Method - Class in net.imagej.updater.util
ByteCodeAnalyzer.Mode - Enum in net.imagej.updater.util
bytes - Variable in class net.imagej.updater.FilesUploader.DbXmlFile
ByteTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.ByteTableToResultsTable

C

c() - Method in class net.imagej.axis.Variable3Axis
C(long[], int) - Static method in class net.imagej.ops.threshold.Thresholds: The partial sum C from C.
CachedModelBundle - Class in net.imagej.tensorflow: A wrapper for SavedModelBundle remembering if it got closed.
CachedModelBundle(String, String[]) - Constructor for class net.imagej.tensorflow.CachedModelBundle
CachedOpEnvironment - Class in net.imagej.ops.cached: Creates CachedFunctionOps which know how to cache their outputs.
CachedOpEnvironment(OpEnvironment) - Constructor for class net.imagej.ops.cached.CachedOpEnvironment
CachedOpEnvironment(OpEnvironment, Collection<? extends OpInfo>) - Constructor for class net.imagej.ops.cached.CachedOpEnvironment
CachedOpEnvironment(OpEnvironment, Collection<? extends OpInfo>, Collection<Class<?>>) - Constructor for class net.imagej.ops.cached.CachedOpEnvironment
cacheFile(URL, boolean) - Method in class net.imagej.updater.Diff: Cache a file locally.
CacheROIPostprocessor - Class in net.imagej.omero.legacy: A Postprocessor which checks if there are ROIs as outputs.
CacheROIPostprocessor() - Constructor for class net.imagej.omero.legacy.CacheROIPostprocessor
calcOutputValue() - Method in interface net.imagej.plugins.commands.neigh.Neighborhood3x3Watcher: Called after neighborhood is completely visited.
calculate(Iterable<T>, Iterable) - Method in class net.imagej.ops.coloc.icq.LiICQ
calculate(Iterable<T>, Iterable) - Method in class net.imagej.ops.coloc.kendallTau.KendallTauBRank
calculate(RandomAccessibleInterval<T>, RandomAccessibleInterval) - Method in class net.imagej.ops.coloc.maxTKendallTau.MTKT
calculate(Iterable<T>, Iterable) - Method in class net.imagej.ops.coloc.pearsons.DefaultPearsons
calculate(Dimensions, T) - Method in class net.imagej.ops.create.img.CreateImgFromDimsAndType
calculate(Img<T>) - Method in class net.imagej.ops.create.img.CreateImgFromImg
calculate(Img<T>) - Method in class net.imagej.ops.create.imgFactory.CreateImgFactoryFromImg
calculate() - Method in class net.imagej.ops.create.imgFactory.DefaultCreateImgFactory
calculate(Interval) - Method in class net.imagej.ops.create.imgLabeling.CreateImgLabelingFromInterval
calculate(Dimensions) - Method in class net.imagej.ops.create.imgLabeling.DefaultCreateImgLabeling
calculate(Img<T>) - Method in class net.imagej.ops.create.imgPlus.DefaultCreateImgPlus
calculate() - Method in class net.imagej.ops.create.integerType.DefaultCreateIntegerType
calculate(double[][]) - Method in class net.imagej.ops.create.kernel.CreateKernel2D
calculate(double[], Integer) - Method in class net.imagej.ops.create.kernelBiGauss.DefaultCreateKernel2ndDerivBiGauss
calculate(double[], Integer) - Method in class net.imagej.ops.create.kernelBiGauss.DefaultCreateKernelBiGauss
calculate(Dimensions) - Method in class net.imagej.ops.create.kernelDiffraction.DefaultCreateKernelGibsonLanni
calculate(Double, double[]) - Method in class net.imagej.ops.create.kernelGabor.CreateKernelGaborIsotropic
calculate(double[], double[]) - Method in class net.imagej.ops.create.kernelGabor.DefaultCreateKernelGabor
calculate(Double) - Method in class net.imagej.ops.create.kernelGauss.CreateKernelGaussSymmetric
calculate(double[]) - Method in class net.imagej.ops.create.kernelGauss.DefaultCreateKernelGauss
calculate(Double) - Method in class net.imagej.ops.create.kernelLog.CreateKernelLogSymmetric
calculate(double[]) - Method in class net.imagej.ops.create.kernelLog.DefaultCreateKernelLog
calculate() - Method in class net.imagej.ops.create.kernelSobel.CreateKernelSobel
calculate() - Method in class net.imagej.ops.create.labelingMapping.DefaultCreateLabelingMapping
calculate() - Method in class net.imagej.ops.create.nativeType.DefaultCreateNativeType
calculate(Class<T>) - Method in class net.imagej.ops.create.object.CreateObjectFromClass
calculate(RandomAccessibleInterval) - Method in class net.imagej.ops.deconvolve.NonCirculantFirstGuess
calculate(String) - Method in class net.imagej.ops.eval.DefaultEval
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocHXY
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocMeanX
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocMeanY
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocPX
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocPXMinusY
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocPXPlusY
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocPY
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocStdX
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocStdY
calculate(IterableInterval<T>) - Method in class net.imagej.ops.features.zernike.helper.ZernikeComputer
calculate(RandomAccessibleInterval, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.convolve.ConvolveNaiveF
calculate(RandomAccessibleInterval, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.convolve.PadAndConvolveFFTF
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.derivative.PartialDerivativesRAI
calculate(Dimensions, T) - Method in class net.imagej.ops.filter.fft.CreateOutputFFTMethods
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.fft.FFTMethodsOpF
calculate(Dimensions) - Method in class net.imagej.ops.filter.fftSize.ComputeFFTMethodsSize
calculate(Dimensions) - Method in class net.imagej.ops.filter.fftSize.DefaultComputeFFTSize
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.hessian.HessianRAI
calculate(I, Dimensions) - Method in class net.imagej.ops.filter.pad.PaddingIntervalCentered
calculate(I, Interval) - Method in class net.imagej.ops.filter.pad.PaddingIntervalOrigin
calculate(I) - Method in class net.imagej.ops.filter.pad.PadInput
calculate(I, Dimensions) - Method in class net.imagej.ops.filter.pad.PadInputFFT
calculate(I, Dimensions) - Method in class net.imagej.ops.filter.pad.PadShiftKernel
calculate(IterableInterval<?>) - Method in class net.imagej.ops.geom.CentroidII
calculate(LabelRegion<?>) - Method in class net.imagej.ops.geom.CentroidLabelRegion
calculate(Mesh) - Method in class net.imagej.ops.geom.CentroidMesh
calculate(Polygon2D) - Method in class net.imagej.ops.geom.CentroidPolygon
calculate(IterableInterval<T>) - Method in class net.imagej.ops.geom.DefaultCenterOfGravity
calculate(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultBoundingBox
calculate(RandomAccessibleInterval) - Method in class net.imagej.ops.geom.geom2d.DefaultContour
calculate(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultConvexHull2D
calculate(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeret
calculate(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeret
calculate(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMinorMajorAxis
calculate(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultSmallestEnclosingRectangle
calculate(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultConvexHull3D
calculate(IterableRegion) - Method in class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3D
calculate(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3DMesh
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.geom.geom3d.DefaultMarchingCubes
calculate(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultVolumeMesh
calculate(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultVoxelization3D
calculate(Mesh) - Method in class net.imagej.ops.geom.geom3d.mesh.DefaultSmallestOrientedBoundingBox
calculate(IterableInterval<?>) - Method in class net.imagej.ops.geom.SizeII
calculate(IterableInterval<T>) - Method in class net.imagej.ops.image.ascii.DefaultASCII
calculate(IterableInterval<T>) - Method in class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix2D
calculate(IterableInterval<T>) - Method in class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix3D
calculate(Iterable<T>) - Method in class net.imagej.ops.image.histogram.HistogramCreate
calculate(RandomAccessibleInterval) - Method in class net.imagej.ops.image.integral.WrappedIntegralImg
calculate(IterableInterval<T>) - Method in class net.imagej.ops.image.normalize.NormalizeIIFunction
calculate(String) - Method in class net.imagej.ops.lookup.LookupByName
calculate(Class<? extends Op>) - Method in class net.imagej.ops.lookup.LookupByType
calculate(IterableInterval<EI>) - Method in class net.imagej.ops.map.MapViewIIToII
calculate(RandomAccessibleInterval<EI>) - Method in class net.imagej.ops.map.MapViewRAIToRAI
calculate(RandomAccessible<EI>) - Method in class net.imagej.ops.map.MapViewRandomAccessToRandomAccess
calculate(String) - Method in class net.imagej.ops.run.RunByName
calculate(Op) - Method in class net.imagej.ops.run.RunByOp
calculate(Class<? extends Op>) - Method in class net.imagej.ops.run.RunByType
calculate(List<? extends WritablePolyline>) - Method in class net.imagej.ops.segment.detectJunctions.DefaultDetectJunctions
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.segment.detectRidges.DefaultDetectRidges
calculate(I1, I2) - Method in class net.imagej.ops.special.chain.BFViaBC
calculate(I1, I2) - Method in class net.imagej.ops.special.chain.BFViaBF
calculate(I) - Method in class net.imagej.ops.special.chain.UFViaUC
calculate(I) - Method in class net.imagej.ops.special.chain.UFViaUF
calculate(I1, I2) - Method in interface net.imagej.ops.special.function.BinaryFunctionOp: Calculates the output given two inputs.
calculate(I1) - Method in interface net.imagej.ops.special.function.BinaryFunctionOp
calculate() - Method in interface net.imagej.ops.special.function.NullaryFunctionOp: Calculates the output value.
calculate(I) - Method in interface net.imagej.ops.special.function.UnaryFunctionOp: Calculates the output given some input.
calculate() - Method in interface net.imagej.ops.special.function.UnaryFunctionOp
calculate(I1, I2) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCF
calculate(I1) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCF
calculate() - Method in interface net.imagej.ops.special.hybrid.NullaryHybridCF
calculate(I) - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCF
calculate() - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCF
calculate(Iterable) - Method in class net.imagej.ops.stats.DefaultMinMax
calculate(Collection<Vector3d>) - Method in class net.imagej.ops.stats.regression.leastSquares.Quadric
calculate(RandomAccessibleInterval) - Method in class net.imagej.ops.topology.BoxCount: Counts the number of boxes that have foreground in the interval repeatedly with different size boxes
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.addDimensionView.AddDimensionViewMinMax
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.addDimensionView.DefaultAddDimensionView
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.collapseNumericView.DefaultCollapseNumeric2CompositeIntervalView
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.collapseNumericView.DefaultCollapseNumeric2CompositeView
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.collapseRealView.DefaultCollapseReal2CompositeIntervalView
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.collapseRealView.DefaultCollapseReal2CompositeView
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.collapseView.DefaultCollapse2CompositeIntervalView
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.collapseView.DefaultCollapse2CompositeView
calculate(List<? extends RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.transform.concatenateView.ConcatenateViewWithAccessMode
calculate(List<? extends RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.transform.concatenateView.DefaultConcatenateView
calculate(ImgPlus<T>, Interval) - Method in class net.imagej.ops.transform.crop.CropImgPlus
calculate(RandomAccessibleInterval<T>, Interval) - Method in class net.imagej.ops.transform.crop.CropRAI
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.dropSingletonDimensionsView.DefaultDropSingletonDimensionsView
calculate(F) - Method in class net.imagej.ops.transform.extendBorderView.DefaultExtendBorderView
calculate(F) - Method in class net.imagej.ops.transform.extendMirrorDoubleView.DefaultExtendMirrorDoubleView
calculate(F) - Method in class net.imagej.ops.transform.extendMirrorSingleView.DefaultExtendMirrorSingleView
calculate(F) - Method in class net.imagej.ops.transform.extendPeriodicView.DefaultExtendPeriodicView
calculate(F) - Method in class net.imagej.ops.transform.extendRandomView.DefaultExtendRandomView
calculate(F) - Method in class net.imagej.ops.transform.extendValueView.DefaultExtendValueView
calculate(F) - Method in class net.imagej.ops.transform.extendView.DefaultExtendView
calculate(F) - Method in class net.imagej.ops.transform.extendZeroView.DefaultExtendZeroView
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.flatIterableView.DefaultFlatIterableView
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.hyperSliceView.DefaultHyperSliceView
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.hyperSliceView.IntervalHyperSliceView
calculate(I) - Method in class net.imagej.ops.transform.interpolateView.DefaultInterpolateView
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.intervalView.DefaultIntervalView
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.intervalView.IntervalViewMinMax
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.invertAxisView.DefaultInvertAxisView
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.invertAxisView.IntervalInvertAxisView
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.offsetView.DefaultOffsetView
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.offsetView.OffsetViewInterval
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.offsetView.OffsetViewOriginSize
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.permuteCoordinatesInverseView.DefaultPermuteCoordinatesInverseView
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.permuteCoordinatesInverseView.PermuteCoordinateInverseViewOfDimension
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.permuteCoordinatesView.DefaultPermuteCoordinatesView
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.permuteCoordinatesView.PermuteCoordinatesViewOfDimension
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.permuteView.DefaultPermuteView
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.permuteView.IntervalPermuteView
calculate(RealRandomAccessible<T>) - Method in class net.imagej.ops.transform.rasterView.DefaultRasterView
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.rotateView.DefaultRotateView
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.rotateView.IntervalRotateView
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.scaleView.DefaultScaleView
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.shearView.DefaultShearView
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.shearView.ShearViewInterval
calculate(List<? extends RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.transform.stackView.DefaultStackView
calculate(List<? extends RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.transform.stackView.StackViewWithAccessMode
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.subsampleView.DefaultSubsampleView
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.subsampleView.IntervalSubsampleView
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.subsampleView.SubsampleIntervalViewStepsForDims
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.subsampleView.SubsampleViewStepsForDims
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.translateView.DefaultTranslateView
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.translateView.IntervalTranslateView
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.unshearView.DefaultUnshearView
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.unshearView.UnshearViewInterval
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.zeroMinView.DefaultZeroMinView
calculateNormals(Mesh, Mesh) - Static method in class net.imagej.mesh.Meshes: Calculates the normals for a mesh.
calculateTotalSize(List<Uploadable>) - Method in class net.imagej.updater.AbstractUploader
calculateTotalSize(List<Uploadable>) - Method in interface net.imagej.updater.Uploader: TODO
CalibratedAxis - Interface in net.imagej.axis: An axis with an associated AxisType, unit and calibration.
CalibratedRealInterval<A extends CalibratedAxis> - Interface in net.imagej.interval: A CalibratedRealInterval marries a TypedRealInterval with a CalibratedSpace.
CalibratedSpace<A extends CalibratedAxis> - Interface in net.imagej.space: A Euclidean space whose dimensions have units and calibrations.
calibratedValue(double) - Method in interface net.imagej.axis.CalibratedAxis: Returns a calibrated value given a raw position along the axis.
calibratedValue(double) - Method in class net.imagej.axis.ChapmanRichardsAxis
calibratedValue(double) - Method in class net.imagej.axis.DefaultLinearAxis
calibratedValue(double) - Method in class net.imagej.axis.EnumeratedAxis
calibratedValue(double) - Method in class net.imagej.axis.ExponentialAxis
calibratedValue(double) - Method in class net.imagej.axis.ExponentialRecoveryAxis
calibratedValue(double) - Method in class net.imagej.axis.GammaVariateAxis
calibratedValue(double) - Method in class net.imagej.axis.GaussianAxis
calibratedValue(double) - Method in class net.imagej.axis.IdentityAxis
calibratedValue(double) - Method in class net.imagej.axis.InverseRodbardAxis
calibratedValue(double) - Method in class net.imagej.axis.LogLinearAxis
calibratedValue(double) - Method in class net.imagej.axis.PolynomialAxis
calibratedValue(double) - Method in class net.imagej.axis.PowerAxis
calibratedValue(double) - Method in class net.imagej.axis.RodbardAxis
Calibrator - Interface in net.imagej.units: Calibrators map values bidirectionally.
cancel(String) - Method in class net.imagej.ops.filter.tubeness.DefaultTubeness: Cancels the command execution, with the given reason for doing so.
cancel(String) - Method in class net.imagej.ops.thread.chunker.AbstractChunker: Cancels the command execution, with the given reason for doing so.
cancel() - Method in class net.imagej.plugins.commands.assign.MathCommand
cancel(String) - Method in class net.imagej.plugins.commands.debug.PointSetDemo
cancel() - Method in class net.imagej.plugins.commands.display.ChannelsTool
cancel() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
cancel - Variable in class net.imagej.ui.swing.updater.ConflictDialog
cancel() - Method in class net.imagej.ui.swing.updater.ProgressDialog
cancel - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
cancel() - Method in class net.imagej.updater.util.Downloader
cancelled - Variable in class net.imagej.updater.util.Downloader
canConvert(Object, Type) - Method in class net.imagej.convert.ConvertListToFinalInterval
canConvert(Object, Class<?>) - Method in class net.imagej.convert.ConvertListToFinalInterval
canConvert(Class<?>, Class<?>) - Method in class net.imagej.convert.ConvertListToFinalInterval
canConvert(Class<?>, Type) - Method in class net.imagej.convert.ConvertListToFinalInterval: Deprecated.
canConvert(Object, Type) - Method in class net.imagej.convert.DatasetToImgConverter
canConvert(Object, Class<?>) - Method in class net.imagej.convert.DatasetToImgConverter
canConvert(Class<?>, Class<?>) - Method in class net.imagej.legacy.convert.AbstractLegacyConverter
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.DoubleToImagePlusConverter
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateUnwrapConverter
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateUnwrapConverter
canConvert(ConversionRequest) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.AbstractRoiUnwrapConverter
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.AbstractRoiUnwrapConverter
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter
canConvert(Class<?>, Class<?>) - Method in class net.imagej.legacy.convert.roi.line.IJLineToLineConverter
canConvert(ConversionRequest) - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter
canConvert(Class<?>, Class<?>) - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.StringToImagePlusConverter
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.GenericTableToResultsTable
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.GenericTableToResultsTable
canConvert(ConversionRequest) - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
canConvert(Object, Type) - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
canConvert(Object, Class<?>) - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
canConvert(Object, Type) - Method in class net.imagej.omero.legacy.convert.ROITreeToOverlay
canConvert(Object, Class<?>) - Method in class net.imagej.omero.legacy.convert.ROITreeToOverlay
canConvert(Object, Type) - Method in class net.imagej.omero.legacy.convert.TreeNodePointRoiWrapperToROIData
canConvert(Object, Class<?>) - Method in class net.imagej.omero.legacy.convert.TreeNodePointRoiWrapperToROIData
canConvert(Object, Type) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.AbstractWrappedOMERORealMaskToMaskPredicate
canConvert(Object, Class<?>) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.AbstractWrappedOMERORealMaskToMaskPredicate
canConvert(ConversionRequest) - Method in class net.imagej.omero.roi.AbstractMaskPredicateToShapeData
canConvert(Object, Type) - Method in class net.imagej.omero.roi.AbstractMaskPredicateToShapeData
canConvert(Object, Class<?>) - Method in class net.imagej.omero.roi.AbstractMaskPredicateToShapeData
canConvert(Object, Type) - Method in class net.imagej.omero.roi.AbstractTreeNodeToROIData
canConvert(Object, Class<?>) - Method in class net.imagej.omero.roi.AbstractTreeNodeToROIData
canConvert(ConversionRequest) - Method in class net.imagej.omero.roi.mask.RAIToMaskData
canConvert(Object, Type) - Method in class net.imagej.omero.roi.mask.RAIToMaskData
canConvert(Object, Class<?>) - Method in class net.imagej.omero.roi.mask.RAIToMaskData
canConvert(Object, Type) - Method in class net.imagej.omero.roi.point.TreeNodeRPCToROIData
canConvert(Object, Class<?>) - Method in class net.imagej.omero.roi.point.TreeNodeRPCToROIData
canConvert(ConversionRequest) - Method in class net.imagej.omero.roi.ROIDataToOMEROROICollection
canConvert(Object, Type) - Method in class net.imagej.omero.roi.ROIDataToOMEROROICollection
canConvert(Object, Class<?>) - Method in class net.imagej.omero.roi.ROIDataToOMEROROICollection
canConvert(ConversionRequest) - Method in class net.imagej.omero.roi.transform.RealTransformUnaryCompositeRealMaskRealIntervalToShapeData
canConvert(Object, Type) - Method in class net.imagej.omero.roi.transform.RealTransformUnaryCompositeRealMaskRealIntervalToShapeData
canConvert(Object, Class<?>) - Method in class net.imagej.omero.roi.transform.RealTransformUnaryCompositeRealMaskRealIntervalToShapeData
canConvert(Object, Type) - Method in class net.imagej.omero.roi.transform.ShapeDataToTransformedOMERORealMaskRealInterval
canConvert(Object, Class<?>) - Method in class net.imagej.omero.roi.transform.ShapeDataToTransformedOMERORealMaskRealInterval
canConvert(Class<?>, Type) - Method in class net.imagej.roi.AbstractMaskToRAConverter: Deprecated.
canConvert(Object, Type) - Method in class net.imagej.roi.AbstractMaskToRAConverter
canConvert(Object, Class<?>) - Method in class net.imagej.roi.AbstractMaskToRAConverter
canConvert(Class<?>, Class<?>) - Method in class net.imagej.roi.AbstractMaskToRAConverter
canConvert(Object, Type) - Method in class net.imagej.roi.AbstractRAToMaskConverter
canConvert(Object, Class<?>) - Method in class net.imagej.roi.AbstractRAToMaskConverter
canConvert(Class<?>, Type) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter: Deprecated.
canConvert(Object, Type) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter
canConvert(Object, Class<?>) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter
canConvert(Class<?>, Class<?>) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter
canConvert(Object, Type) - Method in class net.imagej.roi.AbstractRRAToRealMaskConverter
canConvert(Object, Class<?>) - Method in class net.imagej.roi.AbstractRRAToRealMaskConverter
canConvert(Object, Type) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper
canConvert(Object, Class<?>) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper
canConvert(Object, Type) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper
canConvert(Object, Class<?>) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper
canConvert(Object, Type) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper
canConvert(Object, Class<?>) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper
canConvert(Object, Type) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper
canConvert(Object, Class<?>) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper
candidates(OpEnvironment, String, Class<? extends Op>, int, SpecialOp.Flavor) - Static method in interface net.imagej.ops.special.SpecialOp
canDisplay(Class<?>) - Method in class net.imagej.display.DefaultImageDisplay
canExecute(File) - Static method in class net.imagej.updater.util.UpdaterUtil
canOpen(String) - Method in interface net.imagej.DatasetService: Deprecated.
Use io.scif.services.DatasetIOService#canOpen instead.
canOpen(String) - Method in class net.imagej.DefaultDatasetService: Deprecated.
Use io.scif.services.DatasetIOService#canOpen instead.
canProvide(ModuleItem<?>) - Method in class net.imagej.batch.input.DatasetBatchInputProvider
canSave(String) - Method in interface net.imagej.DatasetService: Deprecated.
Use io.scif.services.DatasetIOService#canSave instead.
canSave(String) - Method in class net.imagej.DefaultDatasetService: Deprecated.
Use io.scif.services.DatasetIOService#canSave instead.
canUpload - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
CanvasEvent - Class in net.imagej.display.event: An event indicating something has happened to an ImageCanvas.
CanvasEvent(ImageCanvas) - Constructor for class net.imagej.display.event.CanvasEvent
canView(Display<?>) - Method in class net.imagej.legacy.display.ImagePlusDisplayViewer
canView(Display<?>) - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer
canView(Display<?>) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
canWrite(File) - Static method in class net.imagej.updater.UpToDate
capitalize(String) - Static method in class net.imagej.util.MediaWikiClient
capture() - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer
capture() - Method in class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer
capture() - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas: Captures the current view of data displayed in the canvas, including all JHotDraw embellishments.
capture() - Method in interface net.imagej.ui.viewer.image.ImageDisplayViewer
CaptureImage - Class in net.imagej.plugins.commands.display: Captures the current view of an ImageDisplay to a Dataset.
CaptureImage() - Constructor for class net.imagej.plugins.commands.display.CaptureImage
captureScreen() - Method in class net.imagej.display.DummyScreenCaptureService: No-op implementation.
captureScreen() - Method in interface net.imagej.display.ScreenCaptureService
CaptureScreen - Class in net.imagej.plugins.commands.display: Captures the entire screen to a Dataset.
CaptureScreen() - Constructor for class net.imagej.plugins.commands.display.CaptureScreen
captureScreen() - Method in class net.imagej.ui.awt.AWTScreenCaptureService: Captures the entire screen and returns the result in a Dataset.
captureScreenRegion(int, int, int, int) - Method in class net.imagej.display.DummyScreenCaptureService: No-op implementation.
captureScreenRegion(int, int, int, int) - Method in interface net.imagej.display.ScreenCaptureService
captureScreenRegion(int, int, int, int) - Method in class net.imagej.ui.awt.AWTScreenCaptureService: Captures a rectangular region of the screen and returns the result in a Dataset.
cast(T, BigComplex) - Method in interface net.imagej.types.DataType: Sets a BigComplex representation from a given variable of the underlying NumericType.
cast(BigComplex, T) - Method in interface net.imagej.types.DataType: Sets a given variable of the underlying NumericType to a value that is closest to a given BigComplex number.
cast(ComplexDoubleType, BigComplex) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
cast(BigComplex, ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
cast(Unsigned12BitType, BigComplex) - Method in class net.imagej.types.DataType12BitUnsignedInteger
cast(BigComplex, Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger
cast(ShortType, BigComplex) - Method in class net.imagej.types.DataType16BitSignedInteger
cast(BigComplex, ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger
cast(UnsignedShortType, BigComplex) - Method in class net.imagej.types.DataType16BitUnsignedInteger
cast(BigComplex, UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger
cast(BitType, BigComplex) - Method in class net.imagej.types.DataType1BitUnsignedInteger
cast(BigComplex, BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger
cast(FloatType, BigComplex) - Method in class net.imagej.types.DataType32BitSignedFloat
cast(BigComplex, FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat
cast(IntType, BigComplex) - Method in class net.imagej.types.DataType32BitSignedInteger
cast(BigComplex, IntType) - Method in class net.imagej.types.DataType32BitSignedInteger
cast(UnsignedIntType, BigComplex) - Method in class net.imagej.types.DataType32BitUnsignedInteger
cast(BigComplex, UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger
cast(ComplexFloatType, BigComplex) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
cast(BigComplex, ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
cast(DoubleType, BigComplex) - Method in class net.imagej.types.DataType64BitSignedFloat
cast(BigComplex, DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat
cast(LongType, BigComplex) - Method in class net.imagej.types.DataType64BitSignedInteger
cast(BigComplex, LongType) - Method in class net.imagej.types.DataType64BitSignedInteger
cast(ByteType, BigComplex) - Method in class net.imagej.types.DataType8BitSignedInteger
cast(BigComplex, ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger
cast(UnsignedByteType, BigComplex) - Method in class net.imagej.types.DataType8BitUnsignedInteger
cast(BigComplex, UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger
cast(NativeBoolType, BigComplex) - Method in class net.imagej.types.DataTypeBoolean
cast(BigComplex, NativeBoolType) - Method in class net.imagej.types.DataTypeBoolean
cast(DataType, U, DataType<V>, V) - Method in interface net.imagej.types.DataTypeService: Fills an output with a cast from an input given information about their DataTypes.
cast(DataType, U, DataType<V>, V, BigComplex) - Method in interface net.imagej.types.DataTypeService: Fills an output with a cast from an input given information about their DataTypes.
cast(BigComplex, BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
cast(PreciseFixedFloatType, BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
cast(BigComplex, PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
cast(UnboundedIntegerType, BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
cast(BigComplex, UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
cast(DataType, U, DataType<V>, V) - Method in class net.imagej.types.DefaultDataTypeService
cast(DataType, U, DataType<V>, V, BigComplex) - Method in class net.imagej.types.DefaultDataTypeService
cca(ImgLabeling<L, I>, RandomAccessibleInterval<T>, ConnectedComponents.StructuringElement, Iterator<L>) - Method in class net.imagej.ops.labeling.LabelingNamespace
cca(ImgLabeling<L, I>, RandomAccessibleInterval<T>, ConnectedComponents.StructuringElement) - Method in class net.imagej.ops.labeling.LabelingNamespace
cca(RandomAccessibleInterval<T>, ConnectedComponents.StructuringElement) - Method in class net.imagej.ops.labeling.LabelingNamespace
ceil(double) - Method in class net.imagej.ops.math.MathNamespace
ceil(O, I) - Method in class net.imagej.ops.math.MathNamespace
Ceil() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Ceil
center() - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper
center() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
center(Mesh) - Static method in class net.imagej.mesh.Meshes: Finds the center of a mesh using vertices.
center() - Method in class net.imagej.omero.roi.ellipse.AbstractOMEROEllipse
center() - Method in class net.imagej.omero.roi.rectangle.AbstractOMERORectangle
CenterAwareComputerOp<I,O> - Interface in net.imagej.ops.map.neighborhood: A center aware computer calculates a result from a given input and its surrounding neighborhood, storing it into the specified output reference.
CenterAwareIntegralComputerOp<I,O> - Interface in net.imagej.ops.map.neighborhood: A center-aware computer calculates a result from a given input and the surrounding rectangular neighborhood in (multiple) integral images.
centerDialog(boolean) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
centerDialog(boolean) - Method in class net.imagej.patcher.HeadlessGenericDialog
centerOfGravity(IterableInterval<T>) - Method in class net.imagej.ops.geom.GeomNamespace
centralMoment00(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment00(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment01(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment01(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment02(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment02(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment03(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment03(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment10(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment10(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment11(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment11(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment12(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment12(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment20(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment20(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment21(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment21(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment30(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centralMoment30(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
centroid(LabelRegion<?>) - Method in class net.imagej.ops.geom.GeomNamespace
centroid(IterableInterval<?>) - Method in class net.imagej.ops.geom.GeomNamespace
centroid(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
centroid(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
CentroidII - Class in net.imagej.ops.geom: This Op computes the centroid of a IterableRegion (Label).
CentroidII() - Constructor for class net.imagej.ops.geom.CentroidII
CentroidLabelRegion - Class in net.imagej.ops.geom: This Op computes the centroid of a IterableRegion (Label).
CentroidLabelRegion() - Constructor for class net.imagej.ops.geom.CentroidLabelRegion
CentroidMesh - Class in net.imagej.ops.geom: Generic implementation of geom.centroid.
CentroidMesh() - Constructor for class net.imagej.ops.geom.CentroidMesh
CentroidPolygon - Class in net.imagej.ops.geom: Generic implementation of geom.centroid.
CentroidPolygon() - Constructor for class net.imagej.ops.geom.CentroidPolygon
Cfloat32() - Constructor for class net.imagej.ops.convert.ConvertImages.Cfloat32
cfloat32(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
cfloat32(Img<ComplexFloatType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
cfloat32(C) - Method in class net.imagej.ops.convert.ConvertNamespace
cfloat32(ComplexFloatType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
Cfloat64() - Constructor for class net.imagej.ops.convert.ConvertImages.Cfloat64
cfloat64(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
cfloat64(Img<ComplexDoubleType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
cfloat64(C) - Method in class net.imagej.ops.convert.ConvertNamespace
cfloat64(ComplexDoubleType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
chanClicked() - Method in class net.imagej.plugins.commands.display.HistogramPlot
changeInput() - Method in class net.imagej.plugins.commands.binary.Binarize: Gets whether to change input data to contain the output mask.
changePixels() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
changes() - Method in class net.imagej.updater.FilesCollection
changeUploadPassword(String) - Method in class net.imagej.util.MediaWikiClient
CHANNEL - Static variable in class net.imagej.axis.Axes: Identifies the Channel dimensional type, representing a generic channel dimension.
ChannelCollection - Class in net.imagej: A ChannelCollection maintains a list of data values.
ChannelCollection() - Constructor for class net.imagej.ChannelCollection: Constructs a new empty channel collection.
ChannelCollection(List<Double>) - Constructor for class net.imagej.ChannelCollection: Constructs a new channel collection from a list of Double values.
ChannelCollection(ColorRGB) - Constructor for class net.imagej.ChannelCollection: Constructs a ChannelCollection containing the three RGB values of a given color.
channels(RandomAccessibleInterval<T>) - Static method in class net.imagej.notebook.chart.Charts
ChannelsTool - Class in net.imagej.plugins.commands.display: Plugin that allows toggling between different color modes.
ChannelsTool() - Constructor for class net.imagej.plugins.commands.display.ChannelsTool
ChapmanRichardsAxis - Class in net.imagej.axis: Implement an axis that uses Chapman and Richards method of scaling.
ChapmanRichardsAxis(AxisType, String, double, double, double) - Constructor for class net.imagej.axis.ChapmanRichardsAxis
characters(char[], int, int) - Method in class net.imagej.updater.POMParser
characters(char[], int, int) - Method in class net.imagej.updater.XMLFileReader
Charts - Class in net.imagej.notebook.chart: Utility methods for calculating histograms and plotting charts.
Charts() - Constructor for class net.imagej.notebook.chart.Charts
check(TreeNode<?>) - Method in class net.imagej.omero.roi.TreeNodeMaskPredicateToROIData
check(TreeNode<?>) - Method in class net.imagej.omero.roi.TreeNodeRAIToROIData
check() - Method in class net.imagej.server.health.ImageJServerHealthCheck
check() - Static method in class net.imagej.updater.UpToDate: Check the update status of the current ImageJ installation.
check(File) - Static method in class net.imagej.updater.UpToDate: Check the update status of a given ImageJ installation.
checkboxes - Variable in class imagej.patcher.HeadlessGenericDialog: Deprecated.
checkboxes - Variable in class net.imagej.patcher.HeadlessGenericDialog
checkboxIndex - Variable in class imagej.patcher.HeadlessGenericDialog: Deprecated.
checkboxIndex - Variable in class net.imagej.patcher.HeadlessGenericDialog
checkConsistency() - Method in class net.imagej.updater.FilesCollection
Checker() - Constructor for class net.imagej.omero.OMEROFormat.Checker
checkForUpdates - Variable in class net.imagej.ui.swing.updater.SitesDialog
CheckForUpdates - Class in net.imagej.updater: This plugin checks whether updates are available, and prompts the user to launch the updater if so.
CheckForUpdates() - Constructor for class net.imagej.updater.CheckForUpdates
checkHTTPSSupport(LogService) - Static method in class net.imagej.updater.util.HTTPSUtil: Calls HTTPSUtil.secureURL to check whether the HTTPS certificate can be handled by the JVM.
checkIfCanceled() - Method in class net.imagej.ui.swing.updater.ProgressDialog
checkInput() - Method in class net.imagej.minmax.DefaultMinMaxMethod
checkInput() - Method in interface net.imagej.minmax.MinMaxMethod: Verifies method inputs
checkInput(I, O) - Method in class net.imagej.ops.convert.clip.ClipRealTypes
checkInput(I, O) - Method in class net.imagej.ops.convert.normalizeScale.NormalizeScaleRealTypes
checkInput(IterableInterval) - Method in class net.imagej.ops.convert.normalizeScale.NormalizeScaleRealTypes
checkInput(I, O) - Method in class net.imagej.ops.convert.RealTypeConverter: Allows the convert pix operation to determine some parameters from the concrete input and output types.
checkInput(IterableInterval) - Method in class net.imagej.ops.convert.RealTypeConverter: If the pixels to be converted stem from an IterableInterval some additionally needed parameters (e.g.
checkInput(I, O) - Method in class net.imagej.ops.convert.scale.ScaleRealTypes
checkInput() - Method in interface net.imagej.plugins.commands.imglib.OutputAlgorithm
checkInput() - Method in class net.imagej.plugins.commands.rotate.XYFlipper: Makes sure input is okay and creates output image
checksum - Variable in class net.imagej.updater.Checksummer.StringAndFile
checksum - Variable in class net.imagej.updater.FileObject.Version
Checksummer - Class in net.imagej.updater: A class to checksum and timestamp all the files shown in the Updater's UI.
Checksummer(FilesCollection, Progress) - Constructor for class net.imagej.updater.Checksummer
Checksummer.StringAndFile - Class in net.imagej.updater
checkWritable() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
children() - Method in class net.imagej.omero.roi.DefaultOMEROROICollection
children() - Method in class net.imagej.omero.roi.DefaultOMEROROIElement
children() - Method in class net.imagej.omero.roi.LazyROITree
children() - Method in class net.imagej.roi.DefaultROITree
choiceIndex - Variable in class imagej.patcher.HeadlessGenericDialog: Deprecated.
choiceIndex - Variable in class net.imagej.patcher.HeadlessGenericDialog
choiceIndices - Variable in class imagej.patcher.HeadlessGenericDialog: Deprecated.
choiceIndices - Variable in class net.imagej.patcher.HeadlessGenericDialog
choices - Variable in class imagej.patcher.HeadlessGenericDialog: Deprecated.
choices - Variable in class net.imagej.patcher.HeadlessGenericDialog
chooseFile(String, File, String) - Method in class net.imagej.legacy.ui.LegacyUI
chooseFiles(File, File[], FileFilter, String) - Method in class net.imagej.legacy.ui.LegacyUI
chooseLabel - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
chooseUpdateSite(FilesCollection, FileObject) - Method in class net.imagej.ui.swing.updater.FileTable
chooseUploadSite(String) - Method in class net.imagej.updater.CommandLine
Chunk - Interface in net.imagej.ops.thread.chunker: A Chunk of code which can be executed by a ChunkerOp.
chunkable - Variable in class net.imagej.ops.thread.chunker.AbstractChunker: Chunk to be executed
chunker(Chunk, long) - Method in class net.imagej.ops.thread.ThreadNamespace: Executes the "chunker" operation on the given arguments.
ChunkerInterleaved - Class in net.imagej.ops.thread.chunker: Implementation of a ChunkerOp that interleaves the chunks.
ChunkerInterleaved() - Constructor for class net.imagej.ops.thread.chunker.ChunkerInterleaved
ChunkerOp - Interface in net.imagej.ops.thread.chunker: A "chunker" operation which executes code across chunks of data using multiple threads.
cInfo() - Method in class net.imagej.ops.OpCandidate: Gets the CommandInfo metadata describing the op to match against.
cInfo() - Method in class net.imagej.ops.OpInfo: Gets the associated CommandInfo metadata.
circularity(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
circularity(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
Class2JarFilesMap - Class in net.imagej.updater.util: Maps class names to the .jar files containing them.
Class2JarFilesMap(File) - Constructor for class net.imagej.updater.util.Class2JarFilesMap
ClassLauncher - Class in imagej: Deprecated.
ClassLauncher() - Constructor for class imagej.ClassLauncher: Deprecated.
ClassLauncher - Class in net.imagej.launcher: This class is the central entry point into Java from the ImageJ launcher.
ClassLauncher() - Constructor for class net.imagej.launcher.ClassLauncher
ClassLoaderPlus - Class in net.imagej.launcher: A classloader whose classpath can be augmented after instantiation.
ClassLoaderPlus() - Constructor for class net.imagej.launcher.ClassLoaderPlus
ClassLoaderPlus(URL...) - Constructor for class net.imagej.launcher.ClassLoaderPlus
ClassLoaderPlus.FatJarFileComparator - Class in net.imagej.launcher: Comparator to ensure that problematic fat JARs are sorted last.
cleanFaceInFront() - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
clear() - Method in class net.imagej.display.DefaultWindowService
clear() - Method in interface net.imagej.display.WindowService: Clears the list of window files.
clear() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
clear() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
clear() - Method in class net.imagej.legacy.convert.TableListWrapper
clear(Class<?>) - Method in class net.imagej.matlab.ImageJMATLABPrefService
clear(String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
clear(Class<?>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
clear() - Method in class net.imagej.omero.LazyTableList
clear() - Method in class net.imagej.omero.legacy.LazyOverlay
clear(Dataset) - Method in interface net.imagej.roi.ROIService: Clears all MaskPredicates associated with the given Dataset
clear(Dataset) - Method in interface net.imagej.table.TableService: Clears any Tables associated with the given Dataset.
clearAll() - Method in class net.imagej.matlab.ImageJMATLABPrefService
clearCustomOptions() - Method in class net.imagej.ui.swing.updater.ViewOptions
clearDiff() - Method in class net.imagej.ui.swing.updater.DiffFile: Remove the previous diff output from the DiffView.
clearFacesInFront() - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
clearROIMappings() - Method in class net.imagej.omero.DefaultOMEROService
clearROIMappings() - Method in interface net.imagej.omero.OMEROService: Removes all Object ROIData mappings.
client - Static variable in class net.imagej.plugins.uploaders.webdav.WebDAVUploader
clip(O, I) - Method in class net.imagej.ops.convert.ConvertNamespace
ClipRealTypes,O extends RealType<O>> - Class in net.imagej.ops.convert.clip: Copies the value of one RealType to another, and clips values which are outside of the output types range.
ClipRealTypes() - Constructor for class net.imagej.ops.convert.clip.ClipRealTypes
clone() - Method in class net.imagej.ui.swing.overlay.PointFigure
clone(Iterable<FileObject>) - Method in class net.imagej.updater.FilesCollection
clone() - Method in class net.imagej.updater.UpdateSite
close() - Method in class net.imagej.omero.DefaultOMEROSession
close() - Method in class net.imagej.omero.OMEROFormat.Reader
close() - Method in class net.imagej.omero.OMEROFormat.Writer
close() - Method in interface net.imagej.omero.OMEROSession
close(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
close(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
close() - Method in class net.imagej.tensorflow.CachedModelBundle
close - Variable in class net.imagej.ui.swing.updater.SitesDialog
close() - Method in class net.imagej.updater.DllFile: Closes the underlying RandomAccessFile.
CloseBinaryImage - Class in net.imagej.plugins.commands.binary: Does a morphological close operation on a binary image.
CloseBinaryImage() - Constructor for class net.imagej.plugins.commands.binary.CloseBinaryImage
CLOSED_BOUNDARY_TEXT - Static variable in class net.imagej.omero.roi.ROIConverters: String identifiers for boundary imagej boundary behaviors
closedBox(double[], double[]) - Method in interface net.imagej.roi.ROIService: Creates a WritableBox with closed boundary behavior.
closedEllipsoid(double[], double[]) - Method in interface net.imagej.roi.ROIService: Creates an WritableEllipsoid with closed boundary behavior.
ClosedOMEROEllipse - Class in net.imagej.omero.roi.ellipse: An OMEROEllipse with closed boundary behavior.
ClosedOMEROEllipse(EllipseData) - Constructor for class net.imagej.omero.roi.ellipse.ClosedOMEROEllipse
ClosedOMEROPolygon - Class in net.imagej.omero.roi.polyshape: An OMEROPolygon with closed boundary behavior.
ClosedOMEROPolygon(PolygonData) - Constructor for class net.imagej.omero.roi.polyshape.ClosedOMEROPolygon
ClosedOMERORectangle - Class in net.imagej.omero.roi.rectangle: An OMERORectangle with closed boundary behavior.
ClosedOMERORectangle(RectangleData) - Constructor for class net.imagej.omero.roi.rectangle.ClosedOMERORectangle
closedPolygon2D(List<? extends RealLocalizable>) - Method in interface net.imagej.roi.ROIService: Creates a WritablePolygon2D with closed boundary behavior.
closedPolygon2D(double[], double[]) - Method in interface net.imagej.roi.ROIService: Creates a WritablePolygon2D with closed boundary behavior.
closedSphere(double[], double) - Method in interface net.imagej.roi.ROIService: Creates a WritableSphere with closed boundary behavior.
closedSuperEllipsoid(double[], double[], double) - Method in interface net.imagej.roi.ROIService: Creates a WritableSuperEllipsoid with closed boundary behavior.
clusterPromenence(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
clusterPromenence(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
clusterShade(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
clusterShade(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
coarseness(RandomAccessibleInterval) - Method in class net.imagej.ops.features.tamura2d.TamuraNamespace
coarseness(O, RandomAccessibleInterval) - Method in class net.imagej.ops.features.tamura2d.TamuraNamespace
coeff(int) - Method in class net.imagej.axis.PolynomialAxis: Gets the ith coefficient of the polynomial.
collapseNumericView(RandomAccessible<N>, int) - Method in class net.imagej.ops.transform.TransformNamespace: Collapse the n^th dimension of an n -dimensional RandomAccessibleInterval<T extends NumericType<T>> into an (n-1)-dimensional RandomAccessibleInterval<NumericComposite<T>>
collapseNumericView(RandomAccessibleInterval<N>) - Method in class net.imagej.ops.transform.TransformNamespace: Collapse the n^th dimension of an n -dimensional RandomAccessibleInterval<T extends NumericType<T>> into an (n-1)-dimensional RandomAccessibleInterval<NumericComposite<T>>
collapseRealView(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.TransformNamespace: Collapse the n^th dimension of an n -dimensional RandomAccessibleInterval<T extends RealType <T>> into an (n-1)-dimensional RandomAccessibleInterval<RealComposite<T>>
collapseRealView(RandomAccessible<R>, int) - Method in class net.imagej.ops.transform.TransformNamespace: Collapse the n^th dimension of an n -dimensional RandomAccessible<T extends RealType <T>> into an (n-1)-dimensional RandomAccessible <RealComposite<T>>
collapseView(RandomAccessible<T>) - Method in class net.imagej.ops.transform.TransformNamespace: Collapse the n^th dimension of an n -dimensional RandomAccessible<T> into an ( n -1)-dimensional RandomAccessible< GenericComposite <T>>
collapseView(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.TransformNamespace: Collapse the n^th dimension of an n -dimensional RandomAccessibleInterval<T> into an ( n -1)-dimensional RandomAccessibleInterval< GenericComposite<T>>
coloc() - Method in interface net.imagej.ops.OpEnvironment: Gateway into ops of the "coloc" namespace.
Colocalize<T extends RealType<T>> - Class in net.imagej.ops.commands.coloc
Colocalize() - Constructor for class net.imagej.ops.commands.coloc.Colocalize
ColocNamespace - Class in net.imagej.ops.coloc: The coloc namespace contains ops that facilitate colocalization analysis.
ColocNamespace() - Constructor for class net.imagej.ops.coloc.ColocNamespace
ColocUtil - Class in net.imagej.ops.coloc: Utility class for coloc ops.
colon(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
COLOR - Static variable in class net.imagej.plugins.commands.display.ChannelsTool
ColorMode - Enum in net.imagej.display: The mode to use to display data in a view.
colorOptions(ColorRGB, ColorRGB) - Method in class net.imagej.legacy.OptionsSynchronizer
ColorTableHarmonizer - Class in net.imagej.legacy.translate: This class synchronizes ImageDisplay ColorTables with ImagePlus LUTs.
ColorTableHarmonizer(ImageDisplayService) - Constructor for class net.imagej.legacy.translate.ColorTableHarmonizer
ColorTableRemapper - Class in net.imagej.plugins.commands.restructure: Class responsible for simple remapping of color tables from one indexing scheme to another.
ColorTableRemapper(ColorTableRemapper.RemapAlgorithm) - Constructor for class net.imagej.plugins.commands.restructure.ColorTableRemapper
ColorTableRemapper.RemapAlgorithm - Interface in net.imagej.plugins.commands.restructure
ColorTables - Class in net.imagej.display: Built-in lookup tables.
ColorTableWidget - Interface in net.imagej.widget: Widget interface for color tables.
CombinedCalibratedRealInterval<A extends CalibratedAxis,S extends CalibratedRealInterval<A>> - Class in net.imagej.interval: A CombinedRealInterval that has calibrated axes.
CombinedCalibratedRealInterval() - Constructor for class net.imagej.interval.CombinedCalibratedRealInterval
CombinedRealInterval<A extends TypedAxis,S extends TypedRealInterval<A>> - Class in net.imagej.interval: A CombinedRealInterval is a RealInterval (specifically a TypedRealInterval) which is a union of other TypedRealIntervals.
CombinedRealInterval() - Constructor for class net.imagej.interval.CombinedRealInterval
CombinedRealInterval.MinMax - Class in net.imagej.interval
CombinedSpace<A extends TypedAxis,S extends TypedSpace<A>> - Class in net.imagej.space: A CombinedSpace is a EuclideanSpace (specifically a TypedSpace) which is a union of other TypedSpaces.
CombinedSpace() - Constructor for class net.imagej.space.CombinedSpace
CommandLine - Class in net.imagej.updater: This is the command-line interface into the ImageJ Updater.
CommandLine() - Constructor for class net.imagej.updater.CommandLine: Deprecated.
CommandLine(File, int) - Constructor for class net.imagej.updater.CommandLine
CommandLine(File, int, Progress) - Constructor for class net.imagej.updater.CommandLine
CommandLine.ConsoleAuthenticator - Class in net.imagej.updater
CommandLine.ConsoleUserInterface - Class in net.imagej.updater
CommandLine.FileFilter - Class in net.imagej.updater
commandService - Variable in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
commandsName() - Method in class net.imagej.legacy.IJ1Helper
compactness(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
compactness(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
ComparableGreaterThan() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.ComparableGreaterThan
ComparableGreaterThanOrEqual() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.ComparableGreaterThanOrEqual
ComparableLessThan() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.ComparableLessThan
ComparableLessThanOrEqual() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.ComparableLessThanOrEqual
compare(String, String) - Method in class imagej.patcher.LegacyHooks.FatJarNameComparator: Deprecated.
compare(File, File) - Method in class net.imagej.launcher.ClassLoaderPlus.FatJarFileComparator
compare(int, int) - Method in interface net.imagej.ops.coloc.IntComparator
compare(String, String) - Method in class net.imagej.patcher.LegacyHooks.FatJarNameComparator
compareTo(Data) - Method in class net.imagej.AbstractData
compareTo(AxisType) - Method in class net.imagej.axis.DefaultAxisType
compareTo(OpInfo) - Method in class net.imagej.ops.OpInfo
compareTo(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
compareTo(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
compareTo(FileObject.Version) - Method in class net.imagej.updater.FileObject.Version
compareTo(UpdateSite) - Method in class net.imagej.updater.UpdateSite
compatible(IterableInterval, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
compatible(IterableInterval, RandomAccessibleInterval<O>) - Static method in class net.imagej.ops.map.Maps
compatible(RandomAccessibleInterval, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
compatible(IterableInterval<I1>, IterableInterval<I2>, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
compatible(IterableInterval<I1>, IterableInterval<I2>, RandomAccessibleInterval<O>) - Static method in class net.imagej.ops.map.Maps
compatible(IterableInterval<I1>, RandomAccessibleInterval<I2>, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
compatible(RandomAccessibleInterval<I1>, IterableInterval<I2>, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
compatible(IterableInterval<I1>, RandomAccessibleInterval<I2>, RandomAccessibleInterval<O>) - Static method in class net.imagej.ops.map.Maps
compatible(RandomAccessibleInterval<I1>, IterableInterval<I2>, RandomAccessibleInterval<O>) - Static method in class net.imagej.ops.map.Maps
compatible(RandomAccessibleInterval<I1>, RandomAccessibleInterval<I2>, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
complement(Object) - Method in class net.imagej.ops.eval.OpEvaluator
complement(int) - Method in class net.imagej.ops.math.MathNamespace
complement(long) - Method in class net.imagej.ops.math.MathNamespace
completeMetadataFrom(FileObject) - Method in class net.imagej.updater.FileObject: Fill unset metadata with metadata from another object
complex(ImgPlus<?>) - Method in class net.imagej.DefaultImgPlusService
complex(ImgPlus<?>) - Method in interface net.imagej.ImgPlusService: Given an ImgPlus of unknown type this returns a typed ImgPlus of type ComplexType.
complexConjugate() - Method in class net.imagej.types.BigComplex: Does complex conjugation on self.
complexConjugate() - Method in class net.imagej.types.PreciseFixedComplexFloatType
complexConjugate() - Method in class net.imagej.types.PreciseFixedFloatType
complexConjugate() - Method in class net.imagej.types.UnboundedIntegerType
complexConjugateMultiply(IterableInterval<O>, IterableInterval, IterableInterval) - Method in class net.imagej.ops.math.MathNamespace
complexConjugateMultiply(C, C, C) - Method in class net.imagej.ops.math.MathNamespace
ComplexConjugateMultiplyMap<T extends ComplexType<T>> - Class in net.imagej.ops.math.multiply
ComplexConjugateMultiplyMap() - Constructor for class net.imagej.ops.math.multiply.ComplexConjugateMultiplyMap
ComplexConjugateMultiplyOp<T extends ComplexType<T>> - Class in net.imagej.ops.math.multiply
ComplexConjugateMultiplyOp() - Constructor for class net.imagej.ops.math.multiply.ComplexConjugateMultiplyOp
complexMerge(TriangularFacet) - Method in class net.imagej.ops.geom.geom3d.mesh.Horizon: Merges another facet to this facet.
ComplexToBit() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToBit
ComplexToCfloat32() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToCfloat32
ComplexToCfloat64() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToCfloat64
ComplexToFloat32() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToFloat32
ComplexToFloat64() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToFloat64
ComplexToInt16() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToInt16
ComplexToInt32() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToInt32
ComplexToInt64() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToInt64
ComplexToInt8() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToInt8
ComplexToUint12() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint12
ComplexToUint128() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint128
ComplexToUint16() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint16
ComplexToUint2() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint2
ComplexToUint32() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint32
ComplexToUint4() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint4
ComplexToUint64() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint64
ComplexToUint8() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint8
componentHidden(ComponentEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
componentMoved(ComponentEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
componentResized(ComponentEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
componentShown(ComponentEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
COMPOSITE - Static variable in class net.imagej.plugins.commands.display.ChannelsTool
CompositeHarmonizer - Class in net.imagej.legacy.translate: This class sets composite channel count for Datasets to match a given ImagePlus.
CompositeHarmonizer() - Constructor for class net.imagej.legacy.translate.CompositeHarmonizer
CompositeOverlay - Class in net.imagej.overlay: A composite of one or more overlays.
CompositeOverlay() - Constructor for class net.imagej.overlay.CompositeOverlay
CompositeOverlay(Context) - Constructor for class net.imagej.overlay.CompositeOverlay
CompositeOverlay(Context, int) - Constructor for class net.imagej.overlay.CompositeOverlay
CompositeOverlay.Operation - Enum in net.imagej.overlay
compute(int, long, long, T, T) - Method in class net.imagej.minmax.DefaultMinMaxMethod
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval, PValueResult) - Method in class net.imagej.ops.coloc.pValue.DefaultPValue
compute(I, O) - Method in class net.imagej.ops.convert.clip.ClipRealTypes
compute(C, BitType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToBit
compute(C, ComplexFloatType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToCfloat32
compute(C, ComplexDoubleType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToCfloat64
compute(C, FloatType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToFloat32
compute(C, DoubleType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToFloat64
compute(C, ShortType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt16
compute(C, IntType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt32
compute(C, LongType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt64
compute(C, ByteType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt8
compute(C, Unsigned12BitType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint12
compute(C, Unsigned128BitType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint128
compute(C, UnsignedShortType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint16
compute(C, Unsigned2BitType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint2
compute(C, UnsignedIntType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint32
compute(C, Unsigned4BitType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint4
compute(C, UnsignedLongType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint64
compute(C, UnsignedByteType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint8
compute(T, BitType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToBit
compute(T, ShortType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt16
compute(T, IntType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt32
compute(T, LongType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt64
compute(T, ByteType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt8
compute(T, Unsigned12BitType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint12
compute(T, Unsigned128BitType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint128
compute(T, UnsignedShortType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint16
compute(T, Unsigned2BitType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint2
compute(T, UnsignedIntType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint32
compute(T, Unsigned4BitType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint4
compute(T, UnsignedLongType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint64
compute(T, UnsignedByteType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint8
compute(I, O) - Method in class net.imagej.ops.convert.copy.CopyRealTypes
compute(IterableInterval, IterableInterval<O>) - Method in class net.imagej.ops.convert.imageType.ConvertIIs
compute(I, O) - Method in class net.imagej.ops.convert.scale.ScaleRealTypes
compute(ArrayImg<T, A>, ArrayImg<T, A>) - Method in class net.imagej.ops.copy.CopyArrayImg
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.copy.CopyII
compute(Img<T>, Img<T>) - Method in class net.imagej.ops.copy.CopyImg
compute(ImgLabeling<L, T>, ImgLabeling<L, T>) - Method in class net.imagej.ops.copy.CopyImgLabeling
compute(LabelingMapping<L>, LabelingMapping<L>) - Method in class net.imagej.ops.copy.CopyLabelingMapping
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.copy.CopyRAI
compute(T, T) - Method in class net.imagej.ops.copy.CopyType
compute(RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.RichardsonLucyC
compute(RandomAccessibleInterval, RandomAccessibleInterval<O>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.RichardsonLucyCorrection: computes the correction factor of the Richardson Lucy Algorithm
compute(I, I) - Method in class net.imagej.ops.deconvolve.RichardsonLucyTVUpdate: performs update step of the Richardson Lucy with Total Variation Algorithm
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.deconvolve.RichardsonLucyUpdate: performs update step of the Richardson Lucy Algorithm
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultASM
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultClusterPromenence
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultClusterShade
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultContrast
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultCorrelation
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultDifferenceEntropy
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultDifferenceVariance
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultEntropy
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultICM1
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultICM2
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultIFDM
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultMaxProbability
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultSumAverage
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultSumEntropy
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultSumVariance
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultTextureHomogeneity
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultVariance
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.features.hog.HistogramOfOrientedGradients2D
compute(RandomAccessibleInterval, ArrayList<LongType>) - Method in class net.imagej.ops.features.lbp2d.DefaultLBP2D
compute(RandomAccessibleInterval, O) - Method in class net.imagej.ops.features.tamura2d.DefaultCoarsenessFeature
compute(RandomAccessibleInterval, O) - Method in class net.imagej.ops.features.tamura2d.DefaultContrastFeature
compute(RandomAccessibleInterval, O) - Method in class net.imagej.ops.features.tamura2d.DefaultDirectionalityFeature
compute(IterableInterval<T>, O) - Method in class net.imagej.ops.features.zernike.DefaultMagnitudeFeature
compute(IterableInterval<T>, O) - Method in class net.imagej.ops.features.zernike.DefaultPhaseFeature
compute(RandomAccessibleInterval, IterableInterval<O>) - Method in class net.imagej.ops.filter.AbstractCenterAwareNeighborhoodBasedFilter
compute(RandomAccessibleInterval, IterableInterval<O>) - Method in class net.imagej.ops.filter.AbstractNeighborhoodBasedFilter
compute(RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter: create FFT memory, create FFT filter and run it
compute(I, O) - Method in class net.imagej.ops.filter.addNoise.AddNoiseRealType
compute(T, T) - Method in class net.imagej.ops.filter.addNoise.AddNoiseRealTypeCFI
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseMap
compute(I, O) - Method in class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseRealType
compute(RandomAccessibleInterval, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.bilateral.DefaultBilateral
compute(RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.convolve.ConvolveFFTC: Call the linear filter that is set up to perform convolution
compute(RandomAccessible, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.convolve.ConvolveNaiveC
compute(RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.correlate.CorrelateFFTC: Call the linear filter that is set up to perform correlation
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.derivative.PartialDerivativeRAI
compute(RandomAccessibleInterval<T>, int[], RandomAccessibleInterval<DoubleType>) - Method in class net.imagej.ops.filter.derivativeGauss.DefaultDerivativeGauss
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.dog.DefaultDoG
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.dog.DoGSingleSigmas
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.fft.FFTMethodsOpC: Computes an ND FFT using FFTMethods
compute(RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.FFTMethodsLinearFFTFilterC: Perform convolution by multiplying the FFTs in the frequency domain
compute(RandomAccessible<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.gauss.DefaultGaussRA
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.gauss.DefaultGaussRAI
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.gauss.GaussRAISingleSigma
compute(RandomAccessibleInterval<C>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.ifft.IFFTMethodsOpC: Compute an ND inverse FFT
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.sobel.SobelRAI
compute(RandomAccessibleInterval<T>, IterableInterval<DoubleType>) - Method in class net.imagej.ops.filter.tubeness.DefaultTubeness
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval) - Method in class net.imagej.ops.filter.vesselness.DefaultFrangi
compute(I, DoubleType) - Method in class net.imagej.ops.geom.AbstractBoundarySizeConvexHull
compute(I, DoubleType) - Method in class net.imagej.ops.geom.AbstractBoxivity
compute(I, DoubleType) - Method in class net.imagej.ops.geom.AbstractConvexity
compute(I, DoubleType) - Method in class net.imagej.ops.geom.AbstractSizeConvexHull
compute(I, DoubleType) - Method in class net.imagej.ops.geom.AbstractSolidity
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultCircularity
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultEccentricity
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultElongation
compute(Pair<RealLocalizable, RealLocalizable>, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultFeretsAngle
compute(Pair<RealLocalizable, RealLocalizable>, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultFeretsDiameter
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultFeretsDiameterForAngle
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMajorAxis
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeretAngle
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeretDiameter
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeretAngle
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeretDiameter
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMinorAxis
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultPerimeterLength
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultRoundness
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultSizePolygon
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultVerticesCountConvexHullPolygon
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultVerticesCountPolygon
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultCompactness
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultMainElongation
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultMedianElongation
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultSparenessMesh
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultSphericity
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultSurfaceArea
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultVerticesCountConvexHullMesh
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultVerticesCountMesh
compute(RandomAccessibleInterval, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransform
compute(RandomAccessibleInterval, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransformCalibration
compute(RandomAccessibleInterval, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2D
compute(RandomAccessibleInterval, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2DCalibration
compute(RandomAccessibleInterval, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3D
compute(RandomAccessibleInterval, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3DCalibration
compute(UnaryFunctionOp<long[], N>, IterableInterval<T>) - Method in class net.imagej.ops.image.equation.DefaultCoordinatesEquation
compute(String, IterableInterval<T>) - Method in class net.imagej.ops.image.equation.DefaultEquation
compute(DoubleBinaryOperator, IterableInterval<T>) - Method in class net.imagej.ops.image.equation.DefaultXYEquation
compute(Iterable<T>) - Method in class net.imagej.ops.image.fill.DefaultFill
compute(RandomAccessibleInterval, RandomAccessibleInterval<RealType<?>>) - Method in class net.imagej.ops.image.integral.AbstractIntegralImg
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.image.invert.InvertII
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.image.invert.InvertIIInteger
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.image.normalize.NormalizeIIComputer
compute(RandomAccessibleInterval<T>, ImgLabeling<Integer, IntType>) - Method in class net.imagej.ops.image.watershed.Watershed
compute(RandomAccessibleInterval<T>, ImgLabeling<Integer, IntType>) - Method in class net.imagej.ops.image.watershed.WatershedBinary
compute(RandomAccessibleInterval<T>, ImgLabeling<Integer, IntType>) - Method in class net.imagej.ops.image.watershed.WatershedBinarySingleSigma
compute(RandomAccessibleInterval<T>, ImgLabeling<Integer, IntType>) - Method in class net.imagej.ops.image.watershed.WatershedSeeded
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment00
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment01
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment02
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment03
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment10
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment11
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment12
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment20
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment21
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment30
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.centralmoments.IterableCentralMoment00
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.centralmoments.IterableCentralMoment11
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment1
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment2
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment3
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment4
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment5
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment6
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment7
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.moments.DefaultMoment00
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.moments.DefaultMoment01
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.moments.DefaultMoment10
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.moments.DefaultMoment11
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment02
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment03
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment11
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment12
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment20
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment21
compute(IterableInterval, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment30
compute(A, C) - Method in interface net.imagej.ops.join.Join2Computers
compute(A, BO) - Method in interface net.imagej.ops.join.JoinComputerAndInplace
compute(AO, B) - Method in interface net.imagej.ops.join.JoinInplaceAndComputer
compute(A, A) - Method in interface net.imagej.ops.join.JoinNComputers
compute(RandomAccessibleInterval<T>, ImgLabeling<L, I>) - Method in class net.imagej.ops.labeling.cca.DefaultCCA
compute(ImgLabeling<L, I>, ImgLabeling<L, I>, ImgLabeling<L, I>) - Method in class net.imagej.ops.labeling.MergeLabeling
compute(Vector3d, Quaterniondc, Vector3d) - Method in class net.imagej.ops.linalg.rotate.Rotate3d
compute(Vector3f, Quaternionfc, Vector3f) - Method in class net.imagej.ops.linalg.rotate.Rotate3f
compute(T, T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.And
compute(I, I, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ComparableGreaterThan
compute(I, I, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ComparableGreaterThanOrEqual
compute(I, I, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ComparableLessThan
compute(I, I, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ComparableLessThanOrEqual
compute(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Not
compute(Object, Object, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ObjectsEqual
compute(Object, Object, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ObjectsNotEqual
compute(T, T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Or
compute(T, T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Xor
compute(I, O) - Method in class net.imagej.ops.logic.Default
compute(I, O) - Method in class net.imagej.ops.logic.If
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.And
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Or
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Xor
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.And
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.Or
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.Xor
compute(I, I) - Method in interface net.imagej.ops.loop.LoopComputer
compute(IterableInterval<EI1>, IterableInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToII
compute(IterableInterval<EI1>, IterableInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToIIParallel
compute(IterableInterval<EI1>, IterableInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToRAI
compute(IterableInterval<EI1>, IterableInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToRAIParallel
compute(IterableInterval<EI1>, RandomAccessibleInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToII
compute(IterableInterval<EI1>, RandomAccessibleInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToIIParallel
compute(IterableInterval<EI1>, RandomAccessibleInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToRAI
compute(IterableInterval<EI1>, RandomAccessibleInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToRAIParallel
compute(RandomAccessibleInterval<EI1>, IterableInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToII
compute(RandomAccessibleInterval<EI1>, IterableInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToIIParallel
compute(RandomAccessibleInterval<EI1>, IterableInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToRAI
compute(RandomAccessibleInterval<EI1>, IterableInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToRAIParallel
compute(RandomAccessibleInterval<EI1>, RandomAccessibleInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndRAIToII
compute(RandomAccessibleInterval<EI1>, RandomAccessibleInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndRAIToIIParallel
compute(Iterable<EI>, Iterable<EO>) - Method in class net.imagej.ops.map.MapIterableToIterable
compute(IterableInterval<O>) - Method in class net.imagej.ops.map.MapNullaryII
compute(Iterable<O>) - Method in class net.imagej.ops.map.MapNullaryIterable
compute(IterableInterval<EI>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.IIToII
compute(IterableInterval<EI>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.IIToIIParallel
compute(IterableInterval<EI>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.IIToRAI
compute(IterableInterval<EI>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.IIToRAIParallel
compute(RandomAccessibleInterval<EI>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.RAIToII
compute(RandomAccessibleInterval<EI>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.RAIToIIParallel
compute(RandomAccessibleInterval, Shape, IterableInterval<O>) - Method in class net.imagej.ops.map.neighborhood.DefaultMapNeighborhood
compute(RandomAccessibleInterval, Shape, IterableInterval<O>) - Method in class net.imagej.ops.map.neighborhood.MapNeighborhoodWithCenter
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Add
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.And
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Divide
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Multiply
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Or
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Subtract
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Xor
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Add
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Divide
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Multiply
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Subtract
compute(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputRAI.Add
compute(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputRAI.Divide
compute(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputRAI.Multiply
compute(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputRAI.Subtract
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Add
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Divide
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Multiply
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Subtract
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Add
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Divide
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Multiply
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Subtract
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.multiply.ComplexConjugateMultiplyMap
compute(T, T, T) - Method in class net.imagej.ops.math.multiply.ComplexConjugateMultiplyOp
compute(T) - Method in class net.imagej.ops.math.NullaryNumericTypeMath.Assign
compute(T) - Method in class net.imagej.ops.math.NullaryNumericTypeMath.Zero
compute(T, T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Add
compute(T, T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Divide
compute(T, T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Multiply
compute(T, T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Subtract
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Abs
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccos
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccosh
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccot
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccoth
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccsc
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccsch
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arcsec
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arcsech
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arcsin
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arcsinh
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arctan
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arctanh
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Ceil
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Cos
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Cosh
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Cot
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Coth
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Csc
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Csch
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.CubeRoot
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Exp
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.ExpMinusOne
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Floor
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.GammaConstant
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Invert
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Log
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Log10
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Log2
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.LogOnePlusX
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.MaxConstant
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.MinConstant
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.NearestInt
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Negate
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.PowerConstant
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.RandomGaussian
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.RandomUniform
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Reciprocal
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Round
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sec
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sech
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Signum
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sin
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sinc
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.SincPi
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sinh
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sqr
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sqrt
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Step
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Tan
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Tanh
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Ulp
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.blackTopHat.ListBlackTopHat
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.close.ListClose
compute(RandomAccessibleInterval<T>, Shape, IterableInterval<T>) - Method in class net.imagej.ops.morphology.dilate.DefaultDilate
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.dilate.ListDilate
compute(RandomAccessibleInterval<T>, Shape, IterableInterval<T>) - Method in class net.imagej.ops.morphology.erode.DefaultErode
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.erode.ListErode
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.extractHoles.DefaultExtractHolesComputer
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.fillHoles.DefaultFillHoles
compute(RandomAccessibleInterval<T>, Localizable, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.floodFill.DefaultFloodFill
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.open.ListOpen
compute(RandomAccessibleInterval, Boolean, RandomAccessibleInterval<BitType>) - Method in class net.imagej.ops.morphology.outline.Outline: Copies the outlines of the objects in the input interval into the output
compute(RandomAccessibleInterval<BitType>, RandomAccessibleInterval<BitType>) - Method in class net.imagej.ops.morphology.thin.AbstractThin
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.topHat.ListTopHat
compute(RandomAccessibleInterval, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.slice.SliceRAI2RAI
compute(I1, I2, O) - Method in class net.imagej.ops.special.chain.BCViaBC
compute(I1, I2, O) - Method in class net.imagej.ops.special.chain.BHCFViaBC
compute(I1, I2, O) - Method in class net.imagej.ops.special.chain.BHCFViaBHCF
compute(I, O) - Method in class net.imagej.ops.special.chain.UCViaUC
compute(I, O) - Method in class net.imagej.ops.special.chain.UHCFViaUC
compute(I, O) - Method in class net.imagej.ops.special.chain.UHCFViaUHCF
compute(I1, I2, O) - Method in interface net.imagej.ops.special.computer.BinaryComputerOp: Computes the output given two inputs.
compute(I1, O) - Method in interface net.imagej.ops.special.computer.BinaryComputerOp
compute(O) - Method in interface net.imagej.ops.special.computer.NullaryComputerOp: Computes the output value.
compute(I, O) - Method in interface net.imagej.ops.special.computer.UnaryComputerOp: Computes the output given some input.
compute(O) - Method in interface net.imagej.ops.special.computer.UnaryComputerOp
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultGeometricMean
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultHarmonicMean
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultKurtosis
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultMean
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultMedian
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultMoment1AboutMean
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultMoment2AboutMean
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultMoment3AboutMean
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultMoment4AboutMean
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultPercentile
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultQuantile
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultSize
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultSkewness
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultStandardDeviation
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultSum
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultSumOfInverses
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultSumOfLogs
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultSumOfSquares
compute(Iterable, O) - Method in class net.imagej.ops.stats.DefaultVariance
compute(IterableInterval, O) - Method in class net.imagej.ops.stats.IISize
compute(RectangleNeighborhood<Composite>, DoubleType) - Method in class net.imagej.ops.stats.IntegralMean
compute(RectangleNeighborhood, DoubleType) - Method in class net.imagej.ops.stats.IntegralSum
compute(RectangleNeighborhood<Composite>, DoubleType) - Method in class net.imagej.ops.stats.IntegralVariance
compute(Iterable, O) - Method in class net.imagej.ops.stats.IterableGeometricMean
compute(Iterable, O) - Method in class net.imagej.ops.stats.IterableHarmonicMean
compute(Iterable<T>, T) - Method in class net.imagej.ops.stats.IterableMax
compute(Iterable, O) - Method in class net.imagej.ops.stats.IterableMean
compute(Iterable<T>, T) - Method in class net.imagej.ops.stats.IterableMin
compute(Iterable, O) - Method in class net.imagej.ops.stats.IterableStandardDeviation
compute(Iterable, O) - Method in class net.imagej.ops.stats.IterableVariance
compute(I, O) - Method in class net.imagej.ops.threshold.AbstractApplyThresholdIterable
compute(Histogram1d<T>, T) - Method in class net.imagej.ops.threshold.AbstractComputeThresholdHistogram
compute(Iterable<T>, T, Iterable<BitType>) - Method in class net.imagej.ops.threshold.apply.ApplyConstantThreshold
compute(Comparable<? super T>, T, BitType) - Method in class net.imagej.ops.threshold.apply.ApplyThresholdComparable
compute(T, T, BitType) - Method in class net.imagej.ops.threshold.apply.ApplyThresholdComparator
compute(RandomAccessibleInterval, IterableInterval<BitType>) - Method in class net.imagej.ops.threshold.apply.LocalThresholdIntegral
compute(Iterable<T>, T, O) - Method in class net.imagej.ops.threshold.LocalThresholdMethodHistogram
compute(RandomAccessibleInterval, DoubleType) - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26N
compute(RandomAccessibleInterval, DoubleType) - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26NFloating
compute(RandomAccessibleInterval, DoubleType) - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection
compute(RandomAccessibleInterval<T>, IterableInterval<V>) - Method in class net.imagej.ops.transform.project.DefaultProjectParallel
compute(RandomAccessibleInterval<T>, IterableInterval<V>) - Method in class net.imagej.ops.transform.project.ProjectRAIToII
compute(RandomAccessibleInterval<T>, IterableInterval<V>) - Method in class net.imagej.ops.transform.project.ProjectRAIToIterableInterval
computeBin(Histogram1d<T>) - Method in interface net.imagej.ops.threshold.ComputeThresholdHistogram: Computes the bin number of the threshold cutoff within the histogram.
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.huang.ComputeHuangThreshold
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ij1.ComputeIJ1Threshold
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.intermodes.ComputeIntermodesThreshold
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.isoData.ComputeIsoDataThreshold
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.li.ComputeLiThreshold
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.maxEntropy.ComputeMaxEntropyThreshold
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.maxLikelihood.ComputeMaxLikelihoodThreshold
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.mean.ComputeMeanThreshold
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.minError.ComputeMinErrorThreshold
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.minimum.ComputeMinimumThreshold
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.moments.ComputeMomentsThreshold
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.otsu.ComputeOtsuThreshold
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.percentile.ComputePercentileThreshold
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.renyiEntropy.ComputeRenyiEntropyThreshold
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.rosin.ComputeRosinThreshold
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.shanbhag.ComputeShanbhagThreshold
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.triangle.ComputeTriangleThreshold
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.yen.ComputeYenThreshold
computeBinomialFactorial(int, int, int, double[][]) - Static method in class net.imagej.ops.features.zernike.helper.ZernikeComputer
ComputeFFTMethodsSize - Class in net.imagej.ops.filter.fftSize: Op that calculates FFT sizes.
ComputeFFTMethodsSize() - Constructor for class net.imagej.ops.filter.fftSize.ComputeFFTMethodsSize
ComputeHuangThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.huang: Implements Huang's threshold method by Huang & Wang.
ComputeHuangThreshold() - Constructor for class net.imagej.ops.threshold.huang.ComputeHuangThreshold
ComputeIJ1Threshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.ij1: Implements the default threshold method from ImageJ 1.x.
ComputeIJ1Threshold() - Constructor for class net.imagej.ops.threshold.ij1.ComputeIJ1Threshold
ComputeIntermodesThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.intermodes: Implements an intermodes threshold method by Prewitt & Mendelsohn.
ComputeIntermodesThreshold() - Constructor for class net.imagej.ops.threshold.intermodes.ComputeIntermodesThreshold
ComputeIsoDataThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.isoData: Implements an IsoData (intermeans) threshold method by Ridler & Calvard.
ComputeIsoDataThreshold() - Constructor for class net.imagej.ops.threshold.isoData.ComputeIsoDataThreshold
ComputeLiThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.li: Implements Li's threshold method by Li & Lee, and Li & Tam, and Sezgin & Sankur.
ComputeLiThreshold() - Constructor for class net.imagej.ops.threshold.li.ComputeLiThreshold
ComputeMaxEntropyThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.maxEntropy: Implements Kapur-Sahoo-Wong (Maximum Entropy) thresholding method.
ComputeMaxEntropyThreshold() - Constructor for class net.imagej.ops.threshold.maxEntropy.ComputeMaxEntropyThreshold
ComputeMaxLikelihoodThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.maxLikelihood: Implements a maximum likelihood threshold method by Dempster, Laird, & Rubin and Glasbey.
ComputeMaxLikelihoodThreshold() - Constructor for class net.imagej.ops.threshold.maxLikelihood.ComputeMaxLikelihoodThreshold
ComputeMeanThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.mean: Implements a mean threshold method by Glasbey.
ComputeMeanThreshold() - Constructor for class net.imagej.ops.threshold.mean.ComputeMeanThreshold
ComputeMinErrorThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.minError: Implements a minimum error threshold method by Kittler & Illingworth and Glasbey.
ComputeMinErrorThreshold() - Constructor for class net.imagej.ops.threshold.minError.ComputeMinErrorThreshold
ComputeMinimumThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.minimum: Implements a minimum threshold method by Prewitt & Mendelsohn.
ComputeMinimumThreshold() - Constructor for class net.imagej.ops.threshold.minimum.ComputeMinimumThreshold
computeMinSize(Interval, List<Shape>) - Static method in class net.imagej.ops.morphology.Morphologies: Computes the min coordinate and the size of an Interval after padding with a list of Shapes in a series morphology operations.
ComputeMomentsThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.moments: Implements a moments based threshold method by Tsai.
ComputeMomentsThreshold() - Constructor for class net.imagej.ops.threshold.moments.ComputeMomentsThreshold
ComputeOtsuThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.otsu: Implements Otsu's threshold method.
ComputeOtsuThreshold() - Constructor for class net.imagej.ops.threshold.otsu.ComputeOtsuThreshold
ComputePercentileThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.percentile: Implements a percentile threshold method by Doyle.
ComputePercentileThreshold() - Constructor for class net.imagej.ops.threshold.percentile.ComputePercentileThreshold
computer(OpEnvironment, Class<? extends Op>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs
computer(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
computer(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<F>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
computer(OpEnvironment, Class<? extends Op>, I, Object...) - Static method in class net.imagej.ops.special.chain.RTs
ComputerConverter<A,B> - Class in net.imagej.ops.special.computer: A Converter backed by a UnaryComputerOp.
ComputerConverter(UnaryComputerOp<A, B>) - Constructor for class net.imagej.ops.special.computer.ComputerConverter
ComputeRenyiEntropyThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.renyiEntropy: Implements a Renyi entropy based threshold method by Kapur, Sahoo, & Wong.
ComputeRenyiEntropyThreshold() - Constructor for class net.imagej.ops.threshold.renyiEntropy.ComputeRenyiEntropyThreshold
ComputeRosinThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.rosin: Implements Rosin's threshold method.
ComputeRosinThreshold() - Constructor for class net.imagej.ops.threshold.rosin.ComputeRosinThreshold
Computers - Class in net.imagej.ops.special.computer: Utility class for looking up computer ops in a type-safe way.
ComputeShanbhagThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.shanbhag: Implements Shanbhag's threshold method.
ComputeShanbhagThreshold() - Constructor for class net.imagej.ops.threshold.shanbhag.ComputeShanbhagThreshold
ComputeThreshold<I,O> - Interface in net.imagej.ops.threshold: An algorithm for computing a threshold value that divides an object into two classes.
ComputeThresholdHistogram<T extends RealType<T>> - Interface in net.imagej.ops.threshold: Interface for threshold computation algorithms relying on a histogram.
ComputeTriangleThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.triangle: Implements a Triangle algorithm threshold method from Zack, Rogers, & Latt.
ComputeTriangleThreshold() - Constructor for class net.imagej.ops.threshold.triangle.ComputeTriangleThreshold
ComputeYenThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.yen: Implements Yen's threshold method (Yen, Chang, & Chang, and Sezgin & Sankur).
ComputeYenThreshold() - Constructor for class net.imagej.ops.threshold.yen.ComputeYenThreshold
concatenateView(List<? extends RandomAccessibleInterval<T>>, int) - Method in class net.imagej.ops.transform.TransformNamespace: Concatenate List of RandomAccessibleInterval along the specified axis.
concatenateView(List<? extends RandomAccessibleInterval<T>>, int, StackView.StackAccessMode) - Method in class net.imagej.ops.transform.TransformNamespace: Concatenate List of RandomAccessibleInterval along the specified axis.
ConcatenateViewWithAccessMode<T> - Class in net.imagej.ops.transform.concatenateView: Wraps the Views#concatenate(int, StackAccessMode, List) method.
ConcatenateViewWithAccessMode() - Constructor for class net.imagej.ops.transform.concatenateView.ConcatenateViewWithAccessMode
conditional(O, I, O, O) - Method in class net.imagej.ops.logic.LogicNamespace
conditional(I, O, O) - Method in class net.imagej.ops.logic.LogicNamespace
conditional(O, I, O) - Method in class net.imagej.ops.logic.LogicNamespace
ConfidenceIntervalAutoscaleMethod<T extends RealType<T>> - Class in net.imagej.autoscale: Computes a confidence interval containing percentages of the an entire set of values in an IterableInterval.
ConfidenceIntervalAutoscaleMethod() - Constructor for class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod: Construct a confidence interval that contains 95% of the data range.
ConfidenceIntervalAutoscaleMethod(double, double) - Constructor for class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod: Construct a confidence interval with user specified percentages of the data range.
CONFIG_FILE - Static variable in class net.imagej.config.ConfigFileParameters
ConfigFileParameters - Class in net.imagej.config: This class reads launcher configuration parameters from a file and allows them to be maintained.
ConfigFileParameters(Context) - Constructor for class net.imagej.config.ConfigFileParameters: Constructs a ConfigFileParameters object.
ConfigFileParameters(Context, File) - Constructor for class net.imagej.config.ConfigFileParameters: Constructs a ConfigFileParameters object.
configure() - Method in class net.imagej.plugins.tools.AbstractColorTool
configure() - Method in class net.imagej.plugins.tools.FloodFillTool: Implements the configuration of this tool.
configure() - Method in class net.imagej.plugins.tools.PaintBrushTool
configure() - Method in class net.imagej.plugins.tools.PencilTool
configure() - Method in class net.imagej.plugins.tools.SprayCanTool
Conflict(FileObject, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict: Deprecated.
Conflict(boolean, FileObject, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict: Deprecated.
Conflict(boolean, boolean, FileObject, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict: Deprecated.
Conflict(boolean, boolean, String, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict: Deprecated.
Conflict(Conflicts.Conflict.Severity, FileObject, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict
Conflict(Conflicts.Conflict.Severity, String, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict
ConflictDialog - Class in net.imagej.ui.swing.updater: This dialog lists conflicts and let's the user choose how to resolve (or ignore) them.
ConflictDialog(UpdaterFrame, String) - Constructor for class net.imagej.ui.swing.updater.ConflictDialog
conflictingVersions(FileObject, File, String) - Method in class net.imagej.updater.Conflicts
conflictList - Variable in class net.imagej.ui.swing.updater.ConflictDialog
conflicts - Variable in class net.imagej.ui.swing.updater.ResolveDependencies
Conflicts - Class in net.imagej.updater: A class describing conflicts in what is selected for updating/uploading.
Conflicts(FilesCollection) - Constructor for class net.imagej.updater.Conflicts
conflicts - Variable in class net.imagej.updater.Conflicts
conflicts - Variable in class net.imagej.updater.FilesCollection
Conflicts.Conflict - Class in net.imagej.updater: An upload or download conflict requiring user resolution.
Conflicts.Conflict.Severity - Enum in net.imagej.updater
Conflicts.Notice - Class in net.imagej.updater: Part of the conflict list, but really only a non-critical notice.
Conflicts.Resolution - Class in net.imagej.updater
conforms() - Method in class net.imagej.ops.coloc.icq.LiICQ
conforms() - Method in class net.imagej.ops.coloc.kendallTau.KendallTauBRank
conforms() - Method in class net.imagej.ops.coloc.maxTKendallTau.MTKT
conforms() - Method in interface net.imagej.ops.Contingent: True if the contingency holds; i.e., the current circumstances conform to the contingency's requirements.
conforms() - Method in class net.imagej.ops.copy.CopyArrayImg
conforms() - Method in class net.imagej.ops.copy.CopyII
conforms() - Method in class net.imagej.ops.copy.CopyImg
conforms() - Method in class net.imagej.ops.copy.CopyImgLabeling
conforms() - Method in class net.imagej.ops.copy.CopyRAI
conforms() - Method in class net.imagej.ops.create.imgPlus.DefaultCreateImgPlus
conforms() - Method in class net.imagej.ops.create.kernel.CreateKernel2D
conforms() - Method in class net.imagej.ops.features.haralick.AbstractHaralickFeature
conforms() - Method in class net.imagej.ops.features.hog.HistogramOfOrientedGradients2D
conforms() - Method in class net.imagej.ops.features.lbp2d.AbstractLBP2DFeature
conforms() - Method in class net.imagej.ops.features.tamura2d.AbstractTamuraFeature
conforms() - Method in class net.imagej.ops.features.zernike.AbstractZernikeFeature
conforms() - Method in class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseMap
conforms() - Method in class net.imagej.ops.filter.bilateral.DefaultBilateral
conforms() - Method in class net.imagej.ops.filter.convolve.ConvolveNaiveC
conforms() - Method in class net.imagej.ops.filter.convolve.ConvolveNaiveF
conforms() - Method in class net.imagej.ops.filter.convolve.PadAndConvolveFFT
conforms() - Method in class net.imagej.ops.filter.convolve.PadAndConvolveFFTF
conforms() - Method in class net.imagej.ops.filter.correlate.PadAndCorrelateFFT
conforms() - Method in class net.imagej.ops.filter.derivativeGauss.DefaultDerivativeGauss
conforms() - Method in class net.imagej.ops.filter.dog.DoGVaryingSigmas
conforms() - Method in class net.imagej.ops.filter.fft.FFTMethodsOpC: Make sure that the input and output size conforms to a supported FFT size.
conforms() - Method in class net.imagej.ops.filter.gauss.DefaultGaussRA
conforms() - Method in class net.imagej.ops.filter.ifft.IFFTMethodsOpC: Make sure that the input size conforms to a supported FFT size.
conforms() - Method in class net.imagej.ops.filter.ifft.IFFTMethodsOpI: Make sure that the input size conforms to a supported FFT size.
conforms() - Method in class net.imagej.ops.filter.sigma.DefaultSigmaFilter
conforms() - Method in class net.imagej.ops.geom.geom2d.DefaultContour
conforms() - Method in class net.imagej.ops.geom.geom2d.DefaultSmallestEnclosingRectangle
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3D
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3DMesh
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultMainElongation
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultMarchingCubes
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultMedianElongation
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultSparenessMesh
conforms() - Method in class net.imagej.ops.geom.geom3d.mesh.AbstractVertexInterpolator
conforms() - Method in class net.imagej.ops.geom.geom3d.mesh.DefaultSmallestOrientedBoundingBox
conforms() - Method in class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix2D
conforms() - Method in class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix3D
conforms() - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransform
conforms() - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransformCalibration
conforms() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2D
conforms() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2DCalibration
conforms() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3D
conforms() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3DCalibration
conforms() - Method in class net.imagej.ops.image.integral.AbstractIntegralImg
conforms() - Method in class net.imagej.ops.image.invert.InvertIIInteger
conforms() - Method in class net.imagej.ops.image.watershed.Watershed
conforms() - Method in class net.imagej.ops.image.watershed.WatershedBinary
conforms() - Method in class net.imagej.ops.image.watershed.WatershedBinarySingleSigma
conforms() - Method in class net.imagej.ops.image.watershed.WatershedSeeded
conforms() - Method in class net.imagej.ops.imagemoments.AbstractImageMomentOp
conforms() - Method in class net.imagej.ops.labeling.cca.DefaultCCA
conforms() - Method in class net.imagej.ops.labeling.MergeLabeling
conforms() - Method in class net.imagej.ops.logic.IIToIIOutputII.And
conforms() - Method in class net.imagej.ops.logic.IIToIIOutputII.Or
conforms() - Method in class net.imagej.ops.logic.IIToIIOutputII.Xor
conforms() - Method in class net.imagej.ops.logic.IIToRAIOutputII.And
conforms() - Method in class net.imagej.ops.logic.IIToRAIOutputII.Or
conforms() - Method in class net.imagej.ops.logic.IIToRAIOutputII.Xor
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToII
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToIIParallel
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToRAI
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToRAIParallel
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToII
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToIIParallel
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToRAI
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToRAIParallel
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToII
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToIIParallel
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToRAI
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToRAIParallel
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndRAIToII
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndRAIToIIParallel
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndII
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndIIParallel
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndRAI
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndRAIParallel
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.RAIAndII
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.RAIAndIIParallel
conforms() - Method in class net.imagej.ops.map.MapIIAndIIInplace
conforms() - Method in class net.imagej.ops.map.MapIIAndIIInplaceParallel
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.IIToII
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.IIToIIParallel
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.IIToRAI
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.IIToRAIParallel
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.RAIToII
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.RAIToIIParallel
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddByte
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddDouble
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddFloat
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddInt
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddLong
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddShort
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedByte
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedInt
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedLong
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedShort
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideByte
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideDouble
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideFloat
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideInt
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideLong
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideShort
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedByte
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedInt
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedLong
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedShort
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyByte
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyDouble
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyFloat
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyInt
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyLong
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyShort
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedByte
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedInt
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedLong
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedShort
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractByte
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractDouble
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractFloat
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractInt
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractLong
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractShort
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedByte
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedInt
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedLong
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedShort
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddByte
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddDouble
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddFloat
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddInt
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddLong
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddShort
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedByte
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedInt
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedLong
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedShort
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideByte
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideDouble
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideFloat
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideInt
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideLong
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideShort
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedByte
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedInt
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedLong
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedShort
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyByte
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyDouble
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyFloat
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyInt
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyLong
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyShort
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedByte
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedInt
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedLong
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedShort
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractByte
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractDouble
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractFloat
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractInt
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractLong
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractShort
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedByte
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedInt
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedLong
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedShort
conforms() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Add
conforms() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Divide
conforms() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Multiply
conforms() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Subtract
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddByte
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddDouble
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddFloat
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddInt
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddLong
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddShort
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedByte
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedInt
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedLong
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedShort
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideByte
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideDouble
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideFloat
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideInt
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideLong
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideShort
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedByte
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedInt
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedLong
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedShort
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyByte
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyDouble
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyFloat
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyInt
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyLong
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyShort
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedByte
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedInt
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedLong
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedShort
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractByte
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractDouble
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractFloat
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractInt
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractLong
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractShort
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedByte
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedInt
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedLong
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedShort
conforms() - Method in class net.imagej.ops.math.IIToIIOutputII.Add
conforms() - Method in class net.imagej.ops.math.IIToIIOutputII.Divide
conforms() - Method in class net.imagej.ops.math.IIToIIOutputII.Multiply
conforms() - Method in class net.imagej.ops.math.IIToIIOutputII.Subtract
conforms() - Method in class net.imagej.ops.math.IIToRAIOutputII.Add
conforms() - Method in class net.imagej.ops.math.IIToRAIOutputII.Divide
conforms() - Method in class net.imagej.ops.math.IIToRAIOutputII.Multiply
conforms() - Method in class net.imagej.ops.math.IIToRAIOutputII.Subtract
conforms() - Method in class net.imagej.ops.math.multiply.ComplexConjugateMultiplyMap
conforms() - Method in class net.imagej.ops.math.multiply.ComplexConjugateMultiplyOp
conforms() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Add
conforms() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Divide
conforms() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Multiply
conforms() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Subtract
conforms() - Method in class net.imagej.ops.morphology.blackTopHat.ListBlackTopHat
conforms() - Method in class net.imagej.ops.morphology.close.ListClose
conforms() - Method in class net.imagej.ops.morphology.dilate.DefaultDilate
conforms() - Method in class net.imagej.ops.morphology.dilate.ListDilate
conforms() - Method in class net.imagej.ops.morphology.erode.DefaultErode
conforms() - Method in class net.imagej.ops.morphology.erode.ListErode
conforms() - Method in class net.imagej.ops.morphology.open.ListOpen
conforms() - Method in class net.imagej.ops.morphology.topHat.ListTopHat
conforms() - Method in class net.imagej.ops.segment.detectJunctions.DefaultDetectJunctions
conforms() - Method in class net.imagej.ops.segment.detectRidges.DefaultDetectRidges
conforms() - Method in class net.imagej.ops.stats.regression.leastSquares.Quadric
conforms() - Method in class net.imagej.ops.threshold.apply.LocalThreshold
conforms() - Method in class net.imagej.ops.threshold.localMean.LocalMeanThreshold
conforms() - Method in class net.imagej.ops.threshold.localNiblack.LocalNiblackThreshold
conforms() - Method in class net.imagej.ops.threshold.localPhansalkar.LocalPhansalkarThreshold
conforms() - Method in class net.imagej.ops.threshold.localSauvola.LocalSauvolaThreshold
conforms() - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26N: The algorithm is defined only for 3D images
conforms() - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26NFloating: The algorithm is defined only for 3D images
conforms() - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection: The algorithm is defined only for 3D images
conforms() - Method in class net.imagej.ops.transform.project.DefaultProjectParallel
conforms() - Method in class net.imagej.ops.transform.project.ProjectRAIToII
conforms() - Method in class net.imagej.ops.transform.project.ProjectRAIToIterableInterval
conforms() - Method in class net.imagej.ops.transform.scaleView.DefaultScaleView
conforms() - Method in class net.imagej.ops.transform.subsampleView.SubsampleIntervalViewStepsForDims
conforms() - Method in class net.imagej.ops.transform.subsampleView.SubsampleViewStepsForDims
console - Variable in class net.imagej.updater.CommandLine.ConsoleAuthenticator
console - Variable in class net.imagej.updater.CommandLine.ConsoleUserInterface
ConsoleAuthenticator() - Constructor for class net.imagej.updater.CommandLine.ConsoleAuthenticator
ConsoleUserInterface() - Constructor for class net.imagej.updater.CommandLine.ConsoleUserInterface
constant(String, Object) - Method in class net.imagej.tensorflow.GraphBuilder
constant(String, float[], long...) - Method in class net.imagej.tensorflow.GraphBuilder
constant(String, Tensor<T>) - Method in class net.imagej.tensorflow.GraphBuilder
ConstantToArrayImage - Class in net.imagej.ops.math: Wrapper class for binary math operations between constant values and ArrayImgs.
ConstantToArrayImage.AddByte - Class in net.imagej.ops.math
ConstantToArrayImage.AddDouble - Class in net.imagej.ops.math
ConstantToArrayImage.AddFloat - Class in net.imagej.ops.math
ConstantToArrayImage.AddInt - Class in net.imagej.ops.math
ConstantToArrayImage.AddLong - Class in net.imagej.ops.math
ConstantToArrayImage.AddShort - Class in net.imagej.ops.math
ConstantToArrayImage.AddUnsignedByte - Class in net.imagej.ops.math
ConstantToArrayImage.AddUnsignedInt - Class in net.imagej.ops.math
ConstantToArrayImage.AddUnsignedLong - Class in net.imagej.ops.math
ConstantToArrayImage.AddUnsignedShort - Class in net.imagej.ops.math
ConstantToArrayImage.DivideByte - Class in net.imagej.ops.math
ConstantToArrayImage.DivideDouble - Class in net.imagej.ops.math
ConstantToArrayImage.DivideFloat - Class in net.imagej.ops.math
ConstantToArrayImage.DivideInt - Class in net.imagej.ops.math
ConstantToArrayImage.DivideLong - Class in net.imagej.ops.math
ConstantToArrayImage.DivideShort - Class in net.imagej.ops.math
ConstantToArrayImage.DivideUnsignedByte - Class in net.imagej.ops.math
ConstantToArrayImage.DivideUnsignedInt - Class in net.imagej.ops.math
ConstantToArrayImage.DivideUnsignedLong - Class in net.imagej.ops.math
ConstantToArrayImage.DivideUnsignedShort - Class in net.imagej.ops.math
ConstantToArrayImage.MultiplyByte - Class in net.imagej.ops.math
ConstantToArrayImage.MultiplyDouble - Class in net.imagej.ops.math
ConstantToArrayImage.MultiplyFloat - Class in net.imagej.ops.math
ConstantToArrayImage.MultiplyInt - Class in net.imagej.ops.math
ConstantToArrayImage.MultiplyLong - Class in net.imagej.ops.math
ConstantToArrayImage.MultiplyShort - Class in net.imagej.ops.math
ConstantToArrayImage.MultiplyUnsignedByte - Class in net.imagej.ops.math
ConstantToArrayImage.MultiplyUnsignedInt - Class in net.imagej.ops.math
ConstantToArrayImage.MultiplyUnsignedLong - Class in net.imagej.ops.math
ConstantToArrayImage.MultiplyUnsignedShort - Class in net.imagej.ops.math
ConstantToArrayImage.SubtractByte - Class in net.imagej.ops.math
ConstantToArrayImage.SubtractDouble - Class in net.imagej.ops.math
ConstantToArrayImage.SubtractFloat - Class in net.imagej.ops.math
ConstantToArrayImage.SubtractInt - Class in net.imagej.ops.math
ConstantToArrayImage.SubtractLong - Class in net.imagej.ops.math
ConstantToArrayImage.SubtractShort - Class in net.imagej.ops.math
ConstantToArrayImage.SubtractUnsignedByte - Class in net.imagej.ops.math
ConstantToArrayImage.SubtractUnsignedInt - Class in net.imagej.ops.math
ConstantToArrayImage.SubtractUnsignedLong - Class in net.imagej.ops.math
ConstantToArrayImage.SubtractUnsignedShort - Class in net.imagej.ops.math
ConstantToArrayImageP - Class in net.imagej.ops.math: Wrapper class for multi-threaded version of binary math operations between constant values and ArrayImgs.
ConstantToArrayImageP.AddByte - Class in net.imagej.ops.math: Multi-threaded version of optimized add constant for ArrayImgs of type ByteType
ConstantToArrayImageP.AddDouble - Class in net.imagej.ops.math: Multi-threaded version of optimized add constant for ArrayImgs of type DoubleType
ConstantToArrayImageP.AddFloat - Class in net.imagej.ops.math: Multi-threaded version of optimized add constant for ArrayImgs of type FloatType
ConstantToArrayImageP.AddInt - Class in net.imagej.ops.math: Multi-threaded version of optimized add constant for ArrayImgs of type IntType
ConstantToArrayImageP.AddLong - Class in net.imagej.ops.math: Multi-threaded version of optimized add constant for ArrayImgs of type LongType
ConstantToArrayImageP.AddShort - Class in net.imagej.ops.math: Multi-threaded version of optimized add constant for ArrayImgs of type ShortType
ConstantToArrayImageP.AddUnsignedByte - Class in net.imagej.ops.math: Multi-threaded version of optimized add constant for ArrayImgs of type UnsignedByteType
ConstantToArrayImageP.AddUnsignedInt - Class in net.imagej.ops.math: Multi-threaded version of optimized add constant for ArrayImgs of type UnsignedIntType
ConstantToArrayImageP.AddUnsignedLong - Class in net.imagej.ops.math: Multi-threaded version of optimized add constant for ArrayImgs of type UnsignedLongType
ConstantToArrayImageP.AddUnsignedShort - Class in net.imagej.ops.math: Multi-threaded version of optimized add constant for ArrayImgs of type UnsignedShortType
ConstantToArrayImageP.DivideByte - Class in net.imagej.ops.math: Multi-threaded version of optimized divide constant from ArrayImgs of type ByteType
ConstantToArrayImageP.DivideDouble - Class in net.imagej.ops.math: Multi-threaded version of optimized divide constant from ArrayImgs of type DoubleType
ConstantToArrayImageP.DivideFloat - Class in net.imagej.ops.math: Multi-threaded version of optimized divide constant from ArrayImgs of type FloatType
ConstantToArrayImageP.DivideInt - Class in net.imagej.ops.math: Multi-threaded version of optimized divide constant from ArrayImgs of type IntType
ConstantToArrayImageP.DivideLong - Class in net.imagej.ops.math: Multi-threaded version of optimized divide constant from ArrayImgs of type LongType
ConstantToArrayImageP.DivideShort - Class in net.imagej.ops.math: Multi-threaded version of optimized divide constant from ArrayImgs of type ShortType
ConstantToArrayImageP.DivideUnsignedByte - Class in net.imagej.ops.math: Multi-threaded version of optimized divide constant from ArrayImgs of type UnsignedByteType
ConstantToArrayImageP.DivideUnsignedInt - Class in net.imagej.ops.math: Multi-threaded version of optimized divide constant from ArrayImgs of type UnsignedIntType
ConstantToArrayImageP.DivideUnsignedLong - Class in net.imagej.ops.math: Multi-threaded version of optimized divide constant from ArrayImgs of type UnsignedLongType
ConstantToArrayImageP.DivideUnsignedShort - Class in net.imagej.ops.math: Multi-threaded version of optimized divide constant from ArrayImgs of type UnsignedShortType
ConstantToArrayImageP.MultiplyByte - Class in net.imagej.ops.math: Multi-threaded version of optimized multiply constant for ArrayImgs of type ByteType
ConstantToArrayImageP.MultiplyDouble - Class in net.imagej.ops.math: Multi-threaded version of optimized multiply constant for ArrayImgs of type DoubleType
ConstantToArrayImageP.MultiplyFloat - Class in net.imagej.ops.math: Multi-threaded version of optimized multiply constant for ArrayImgs of type FloatType
ConstantToArrayImageP.MultiplyInt - Class in net.imagej.ops.math: Multi-threaded version of optimized multiply constant for ArrayImgs of type IntType
ConstantToArrayImageP.MultiplyLong - Class in net.imagej.ops.math: Multi-threaded version of optimized multiply constant for ArrayImgs of type LongType
ConstantToArrayImageP.MultiplyShort - Class in net.imagej.ops.math: Multi-threaded version of optimized multiply constant for ArrayImgs of type ShortType
ConstantToArrayImageP.MultiplyUnsignedByte - Class in net.imagej.ops.math: Multi-threaded version of optimized multiply constant for ArrayImgs of type UnsignedByteType
ConstantToArrayImageP.MultiplyUnsignedInt - Class in net.imagej.ops.math: Multi-threaded version of optimized multiply constant for ArrayImgs of type UnsignedIntType
ConstantToArrayImageP.MultiplyUnsignedLong - Class in net.imagej.ops.math: Multi-threaded version of optimized multiply constant for ArrayImgs of type UnsignedLongType
ConstantToArrayImageP.MultiplyUnsignedShort - Class in net.imagej.ops.math: Multi-threaded version of optimized multiply constant for ArrayImgs of type UnsignedShortType
ConstantToArrayImageP.SubtractByte - Class in net.imagej.ops.math: Multi-threaded version of optimized subtract constant from ArrayImgs of type ByteType
ConstantToArrayImageP.SubtractDouble - Class in net.imagej.ops.math: Multi-threaded version of optimized subtract constant from ArrayImgs of type DoubleType
ConstantToArrayImageP.SubtractFloat - Class in net.imagej.ops.math: Multi-threaded version of optimized subtract constant from ArrayImgs of type FloatType
ConstantToArrayImageP.SubtractInt - Class in net.imagej.ops.math: Multi-threaded version of optimized subtract constant from ArrayImgs of type IntType
ConstantToArrayImageP.SubtractLong - Class in net.imagej.ops.math: Multi-threaded version of optimized subtract constant from ArrayImgs of type LongType
ConstantToArrayImageP.SubtractShort - Class in net.imagej.ops.math: Multi-threaded version of optimized subtract constant from ArrayImgs of type ShortType
ConstantToArrayImageP.SubtractUnsignedByte - Class in net.imagej.ops.math: Multi-threaded version of optimized subtract constant from ArrayImgs of type UnsignedByteType
ConstantToArrayImageP.SubtractUnsignedInt - Class in net.imagej.ops.math: Multi-threaded version of optimized subtract constant from ArrayImgs of type UnsignedIntType
ConstantToArrayImageP.SubtractUnsignedLong - Class in net.imagej.ops.math: Multi-threaded version of optimized subtract constant from ArrayImgs of type UnsignedLongType
ConstantToArrayImageP.SubtractUnsignedShort - Class in net.imagej.ops.math: Multi-threaded version of optimized subtract constant from ArrayImgs of type UnsignedShortType
ConstantToIIOutputII - Class in net.imagej.ops.math: Wrapper class for functional binary math operations between constant values and IterableIntervals, and write the result to IterableIntervals.
ConstantToIIOutputII.Add<T extends NumericType<T>> - Class in net.imagej.ops.math
ConstantToIIOutputII.Divide<T extends NumericType<T>> - Class in net.imagej.ops.math
ConstantToIIOutputII.Multiply<T extends NumericType<T>> - Class in net.imagej.ops.math
ConstantToIIOutputII.Subtract<T extends NumericType<T>> - Class in net.imagej.ops.math
ConstantToIIOutputRAI - Class in net.imagej.ops.math: Wrapper class for functional binary math operations between constant values and IterableIntervals, and write the result to RandomAccessibleIntervals.
ConstantToIIOutputRAI.Add<T extends NumericType<T>> - Class in net.imagej.ops.math
ConstantToIIOutputRAI.Divide<T extends NumericType<T>> - Class in net.imagej.ops.math
ConstantToIIOutputRAI.Multiply<T extends NumericType<T>> - Class in net.imagej.ops.math
ConstantToIIOutputRAI.Subtract<T extends NumericType<T>> - Class in net.imagej.ops.math
ConstantToPlanarImage - Class in net.imagej.ops.math: Wrapper class for binary math operations between constant values and PlanarImgs.
ConstantToPlanarImage.AddByte - Class in net.imagej.ops.math
ConstantToPlanarImage.AddDouble - Class in net.imagej.ops.math
ConstantToPlanarImage.AddFloat - Class in net.imagej.ops.math
ConstantToPlanarImage.AddInt - Class in net.imagej.ops.math
ConstantToPlanarImage.AddLong - Class in net.imagej.ops.math
ConstantToPlanarImage.AddShort - Class in net.imagej.ops.math
ConstantToPlanarImage.AddUnsignedByte - Class in net.imagej.ops.math
ConstantToPlanarImage.AddUnsignedInt - Class in net.imagej.ops.math
ConstantToPlanarImage.AddUnsignedLong - Class in net.imagej.ops.math
ConstantToPlanarImage.AddUnsignedShort - Class in net.imagej.ops.math
ConstantToPlanarImage.DivideByte - Class in net.imagej.ops.math
ConstantToPlanarImage.DivideDouble - Class in net.imagej.ops.math
ConstantToPlanarImage.DivideFloat - Class in net.imagej.ops.math
ConstantToPlanarImage.DivideInt - Class in net.imagej.ops.math
ConstantToPlanarImage.DivideLong - Class in net.imagej.ops.math
ConstantToPlanarImage.DivideShort - Class in net.imagej.ops.math
ConstantToPlanarImage.DivideUnsignedByte - Class in net.imagej.ops.math
ConstantToPlanarImage.DivideUnsignedInt - Class in net.imagej.ops.math
ConstantToPlanarImage.DivideUnsignedLong - Class in net.imagej.ops.math
ConstantToPlanarImage.DivideUnsignedShort - Class in net.imagej.ops.math
ConstantToPlanarImage.MultiplyByte - Class in net.imagej.ops.math
ConstantToPlanarImage.MultiplyDouble - Class in net.imagej.ops.math
ConstantToPlanarImage.MultiplyFloat - Class in net.imagej.ops.math
ConstantToPlanarImage.MultiplyInt - Class in net.imagej.ops.math
ConstantToPlanarImage.MultiplyLong - Class in net.imagej.ops.math
ConstantToPlanarImage.MultiplyShort - Class in net.imagej.ops.math
ConstantToPlanarImage.MultiplyUnsignedByte - Class in net.imagej.ops.math
ConstantToPlanarImage.MultiplyUnsignedInt - Class in net.imagej.ops.math
ConstantToPlanarImage.MultiplyUnsignedLong - Class in net.imagej.ops.math
ConstantToPlanarImage.MultiplyUnsignedShort - Class in net.imagej.ops.math
ConstantToPlanarImage.SubtractByte - Class in net.imagej.ops.math
ConstantToPlanarImage.SubtractDouble - Class in net.imagej.ops.math
ConstantToPlanarImage.SubtractFloat - Class in net.imagej.ops.math
ConstantToPlanarImage.SubtractInt - Class in net.imagej.ops.math
ConstantToPlanarImage.SubtractLong - Class in net.imagej.ops.math
ConstantToPlanarImage.SubtractShort - Class in net.imagej.ops.math
ConstantToPlanarImage.SubtractUnsignedByte - Class in net.imagej.ops.math
ConstantToPlanarImage.SubtractUnsignedInt - Class in net.imagej.ops.math
ConstantToPlanarImage.SubtractUnsignedLong - Class in net.imagej.ops.math
ConstantToPlanarImage.SubtractUnsignedShort - Class in net.imagej.ops.math
constrain(AxisType, AxisSubrange) - Method in class net.imagej.sampler.SamplingDefinition: Replaces the current constraining definition of a given axis within the current SamplingDefinition with a given subrange.
contains(Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
contains(Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
contains(Object) - Method in class net.imagej.legacy.convert.TableListWrapper
contains(Object) - Method in class net.imagej.omero.LazyTableList
contains(Roi) - Method in class net.imagej.omero.legacy.LazyOverlay
contains(String) - Method in class net.imagej.server.services.DefaultObjectService
contains(String) - Method in interface net.imagej.server.services.ObjectService: Checks if exists an Object with the given ID.
contains(Point2D.Double) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
contains(Point2D.Double) - Method in class net.imagej.ui.swing.overlay.PointFigure: Checks if a Point2D.Double is near any point contained in the figure
contains(Point2D.Double) - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
containsAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
containsAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
containsAll(Collection<?>) - Method in class net.imagej.legacy.convert.TableListWrapper
containsAll(Collection<?>) - Method in class net.imagej.omero.LazyTableList
containsDebugInfo() - Method in class net.imagej.updater.util.ByteCodeAnalyzer.Attribute
containsDebugInfo() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
containsDebugInfo() - Method in class net.imagej.updater.util.ByteCodeAnalyzer.Method
containsDebugInfo(String) - Static method in class net.imagej.updater.util.DependencyAnalyzer
context() - Method in class net.imagej.AbstractData
context() - Static method in class net.imagej.matlab.ImageJMATLAB
CONTEXT_MENU_ROOT - Static variable in interface net.imagej.display.ImageDisplay: Pop-up context menu root for image displays.
ContextMenuHandler - Class in net.imagej.plugins.tools: Handles display of general-purpose context menu (e.g., on right mouse click).
ContextMenuHandler() - Constructor for class net.imagej.plugins.tools.ContextMenuHandler
Contingent - Interface in net.imagej.ops: A contingency that may hold, or not, depending on the circumstances.
contour(RandomAccessibleInterval<T>, boolean) - Method in class net.imagej.ops.geom.GeomNamespace
contrast(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
contrast(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
contrast(RandomAccessibleInterval) - Method in class net.imagej.ops.features.tamura2d.TamuraNamespace
contrast(O, RandomAccessibleInterval) - Method in class net.imagej.ops.features.tamura2d.TamuraNamespace
convert(Object, Class<T>) - Method in class net.imagej.convert.ConvertIntArrayToFinalInterval
convert(Object, Class<T>) - Method in class net.imagej.convert.ConvertListToFinalInterval
convert(Object, Class<T>) - Method in class net.imagej.convert.ConvertLongArrayToFinalInterval
convert(Object, Class<T>) - Method in class net.imagej.convert.ConvertRAIToIterableInterval
convert(Object, Class<T>) - Method in class net.imagej.convert.DatasetToImgConverter
convert(Object, Class<T>) - Method in class net.imagej.convert.DatasetToImgPlusConverter
convert(Object, Class) - Method in class net.imagej.convert.ImgLabelingToImgConverter
convert(Object, Class<L>) - Method in class net.imagej.convert.ImgToImgLabelingConverter
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.DatasetToImagePlusConverter
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.DoubleToImagePlusConverter
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ImagePlusToDatasetConverter
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ImageTitleToImagePlusConverter
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.OverlayToROITreeConverter
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ResultsTableToGenericTableConverter
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ResultsTableUnwrapper
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter
convert(M) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateUnwrapConverter
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter
convert(R) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.roi.AbstractRoiUnwrapConverter
convert(BinaryCompositeMaskPredicate<RealLocalizable>) - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter
convert(Box) - Method in class net.imagej.legacy.convert.roi.box.BoxToRoiConverter
convert(Roi) - Method in class net.imagej.legacy.convert.roi.box.RoiToBoxConverter
convert(WritableBox) - Method in class net.imagej.legacy.convert.roi.box.WritableBoxToRoiConverter
convert(Ellipsoid) - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidToOvalRoiConverter
convert(OvalRoi) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiToEllipsoidConverter
convert(WritableEllipsoid) - Method in class net.imagej.legacy.convert.roi.ellipsoid.WritableEllipsoidToOvalRoiConverter
convert(Line) - Method in class net.imagej.legacy.convert.roi.line.IJLineToLineConverter
convert(Line) - Method in class net.imagej.legacy.convert.roi.line.LineToIJLineConverter
convert(WritableLine) - Method in class net.imagej.legacy.convert.roi.line.WritableLineToIJLineConverter
convert(PointMask) - Method in class net.imagej.legacy.convert.roi.point.PointMaskToPointRoiConverter
convert(PointRoi) - Method in class net.imagej.legacy.convert.roi.point.PointRoiToRealPointCollectionConverter
convert(RealPointCollection<RealLocalizable>) - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionToPointRoiConverter
convert(WritablePointMask) - Method in class net.imagej.legacy.convert.roi.point.WritablePointMaskToPointRoiConverter
convert(WritableRealPointCollection<RealLocalizableRealPositionable>) - Method in class net.imagej.legacy.convert.roi.point.WritableRealPointCollectionToPointRoiConverter
convert(Polygon2D) - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DToPolygonRoiConverter
convert(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiToPolygon2DConverter
convert(WritablePolygon2D) - Method in class net.imagej.legacy.convert.roi.polygon2d.WritablePolygon2DToPolygonRoiConverter
convert(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToPolylineConverter
convert(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToRealMaskRealIntervalConverter
convert(Polyline) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineToPolylineRoiConverter
convert(WritablePolyline) - Method in class net.imagej.legacy.convert.roi.polyline.WritablePolylineToPolylineRoiConverter
convert(RealMaskRealInterval) - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter
convert(Roi) - Method in class net.imagej.legacy.convert.roi.RoiToMaskIntervalConverter
convert(ShapeRoi) - Method in class net.imagej.legacy.convert.roi.ShapeRoiToMaskRealIntervalConverter
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ROITreeToOverlayConverter
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.StringToImagePlusConverter
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.AbstractTableToResultsTableConverter
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.TableUnwrapper
convert(Object, Class<T>) - Method in class net.imagej.matlab.DatasetMATLABConverter
convert(Object, Class<T>) - Method in class net.imagej.matlab.MATLABDatasetConverter
convert(Histogram1d<?>) - Method in class net.imagej.notebook.chart.Histogram1dToHTMLConverter
convert(BufferedImage) - Method in class net.imagej.notebook.image.BufferedImageToHTMLConverter
convert(DatasetView) - Method in class net.imagej.notebook.image.DatasetViewToHTMLConverter
convert(RandomAccessibleInterval<?>) - Method in class net.imagej.notebook.image.RAIToHTMLConverter
convert(List<?>) - Method in class net.imagej.notebook.mime.ListToHTMLConverter
convert(Object, Class<T>) - Method in class net.imagej.notebook.mime.MIMEConverter
convert(I) - Method in class net.imagej.notebook.mime.MIMEConverter
convert(Table<?, ?>) - Method in class net.imagej.notebook.table.TableToHTMLConverter
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
convert(R) - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.IJROIToOverlay
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.IJROIToROITree
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.AbstractIJRoiWrapperToShapeData
convert(I) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.AbstractIJRoiWrapperToShapeData
convert(DefaultRoiWrapper<?>) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.DefaultRoiWrapperToMaskData
convert(IJLineWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.IJLineWrapperToLineData
convert(IrregularPolylineRoiWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.IrregularPolylineRoiWrapperToMaskData
convert(OvalRoiWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.OvalRoiWrapperToEllipseData
convert(PolygonRoiWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.PolygonRoiWrapperToPolygonData
convert(PolylineRoiWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.PolylineRoiWrapperToPolylineData
convert(RoiWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.RoiWrapperToRectangleData
convert(ShapeRoiWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.ShapeRoiWrapperToMaskData
convert(TextRoiWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.TextRoiWrapperToTextData
convert(UnmodifiablePolylineRoiWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.UnmodifiablePolylineRoiWrapperToPolylineData
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.MaskPredicateToOverlay
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.MaskPredicateToROITree
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.AbstractOMERORealMaskToIJRoi
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.OverlayToROITree
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.ROITreeToOverlay
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.TreeNodePointRoiWrapperToROIData
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.AbstractWrappedOMERORealMaskToMaskPredicate
convert(TextData, BoundaryType) - Method in class net.imagej.omero.legacy.text.OMEROToImageJText
convert(TextRoi) - Method in class net.imagej.omero.legacy.text.TextRoiToTextRoiWrapper
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.AbstractMaskPredicateToShapeData
convert(M, String) - Method in class net.imagej.omero.roi.AbstractMaskPredicateToShapeData
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.AbstractOMERORealMaskUnwrapper
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.AbstractShapeDataToRealMaskRealInterval
convert(S, BoundaryType) - Method in class net.imagej.omero.roi.AbstractShapeDataToRealMaskRealInterval
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.AbstractTreeNodeToROIData
convert(Ellipsoid, String) - Method in class net.imagej.omero.roi.ellipse.ImageJToOMEROEllipse
convert(EllipseData, BoundaryType) - Method in class net.imagej.omero.roi.ellipse.OMEROToImageJEllipse
convert(Line, String) - Method in class net.imagej.omero.roi.line.ImageJToOMEROLine
convert(LineData, BoundaryType) - Method in class net.imagej.omero.roi.line.OMEROToImageJLine
convert(MaskInterval, String) - Method in class net.imagej.omero.roi.mask.MaskIntervalToMaskData
convert(MaskData, BoundaryType) - Method in class net.imagej.omero.roi.mask.OMEROToImageJMask
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.mask.RAIToMaskData
convert(RealMaskRealInterval, String) - Method in class net.imagej.omero.roi.mask.RealMaskRealIntervalToMaskData
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.OMEROROICollectionToROIData
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.OMEROROIElementToROIData
convert(PointMask, String) - Method in class net.imagej.omero.roi.point.ImageJToOMEROPoint
convert(PointData, BoundaryType) - Method in class net.imagej.omero.roi.point.OMEROToImageJPoint
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.point.TreeNodeRPCToROIData
convert(Polygon2D, String) - Method in class net.imagej.omero.roi.polyshape.ImageJToOMEROPolygon
convert(Polyline, String) - Method in class net.imagej.omero.roi.polyshape.ImageJToOMEROPolyline
convert(PolygonData, BoundaryType) - Method in class net.imagej.omero.roi.polyshape.OMEROToImageJPolygon
convert(PolylineData, BoundaryType) - Method in class net.imagej.omero.roi.polyshape.OMEROToImageJPolyline
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMaskToShapeData
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.project.ProjectedOMERORealMaskToShapeData
convert(Box, String) - Method in class net.imagej.omero.roi.rectangle.ImageJToOMERORectangle
convert(RectangleData, BoundaryType) - Method in class net.imagej.omero.roi.rectangle.OMEROToImageJRectangle
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.ROIDataToOMEROROICollection
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.transform.RealTransformUnaryCompositeRealMaskRealIntervalToShapeData
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.transform.ShapeDataToTransformedOMERORealMaskRealInterval
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealIntervalToShapeData
convert(Object, Class<T>) - Method in class net.imagej.ops.geom.geom2d.LabelRegionToPolygonConverter
convert(Object, Class<T>) - Method in class net.imagej.ops.geom.geom3d.mesh.RAIToMeshConverter
convert() - Method in interface net.imagej.ops.OpEnvironment: Gateway into ops of the "convert" namespace.
convert(A, B) - Method in class net.imagej.ops.special.computer.ComputerConverter
convert(Object, Class<T>) - Method in class net.imagej.roi.AbstractMaskToRAConverter
convert(M) - Method in class net.imagej.roi.AbstractMaskToRAConverter
convert(Object, Class<T>) - Method in class net.imagej.roi.AbstractRAToMaskConverter
convert(R) - Method in class net.imagej.roi.AbstractRAToMaskConverter
convert(Object, Class<T>) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter
convert(M) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter
convert(Object, Class<T>) - Method in class net.imagej.roi.AbstractRRAToRealMaskConverter
convert(R) - Method in class net.imagej.roi.AbstractRRAToRealMaskConverter
convert(MaskInterval) - Method in class net.imagej.roi.MaskIntervalToRAIConverter
convert(Mask) - Method in class net.imagej.roi.MaskToRAConverter
convert(RandomAccessibleInterval<BoolType>) - Method in class net.imagej.roi.RAIToMaskIntervalConverter
convert(RandomAccessible<BoolType>) - Method in class net.imagej.roi.RAToMaskConverter
convert(RealMaskRealInterval) - Method in class net.imagej.roi.RealMaskRealIntervalToRRARIConverter
convert(RealMask) - Method in class net.imagej.roi.RealMaskToRRAConverter
convert(RealRandomAccessibleRealInterval<BoolType>) - Method in class net.imagej.roi.RRARIToRealMaskRealIntervalConverter
convert(RealRandomAccessible<BoolType>) - Method in class net.imagej.roi.RRAToRealMaskConverter
convert(MaskAsRandomAccessible<BoolType>) - Method in class net.imagej.roi.Unwrappers.MaskAsRandomAccessibleUnwrapper
convert(MaskIntervalAsRandomAccessibleInterval<BoolType>) - Method in class net.imagej.roi.Unwrappers.MaskIntervalAsRandomAccessibleIntervalUnwrapper
convert(RandomAccessibleAsMask<BoolType>) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper
convert(RandomAccessibleIntervalAsMaskInterval<BoolType>) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper
convert(RealMaskAsRealRandomAccessible<BoolType>) - Method in class net.imagej.roi.Unwrappers.RealMaskAsRealRandomAccessibleUnwrapper
convert(RealMaskRealIntervalAsRealRandomAccessibleRealInterval<BoolType>) - Method in class net.imagej.roi.Unwrappers.RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper
convert(RealRandomAccessibleAsRealMask<BoolType>) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper
convert(RealRandomAccessibleRealIntervalAsRealMaskRealInterval<BoolType>) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper
convert(Object, Class<T>) - Method in class net.imagej.server.converter.NumberToNumericTypeConverter
convert(I) - Method in class net.imagej.server.converter.NumberToNumericTypeConverter
convert(Double) - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.DoubleToDoubleTypeConverter
convert(Float) - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.FloatToFloatTypeConverter
convert(Integer) - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.IntegerToIntTypeConverter
convert(Long) - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.LongToLongTypeConverter
convert(List<Checksummer.StringAndFile>) - Static method in class net.imagej.updater.Checksummer
ConvertIIs,O extends RealType<O>> - Class in net.imagej.ops.convert.imageType
ConvertIIs() - Constructor for class net.imagej.ops.convert.imageType.ConvertIIs
ConvertImages - Class in net.imagej.ops.convert: Ops for converting images between types.
ConvertImages.Bit<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertImages.Cfloat32<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertImages.Cfloat64<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertImages.Float32<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertImages.Float64<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertImages.Int16<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertImages.Int32<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertImages.Int64<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertImages.Int8<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertImages.Uint12<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertImages.Uint128<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertImages.Uint16<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertImages.Uint2<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertImages.Uint32<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertImages.Uint4<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertImages.Uint64<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertImages.Uint8<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertImgPlus,O extends RealType<O>> - Class in net.imagej.ops.commands.convert
ConvertImgPlus() - Constructor for class net.imagej.ops.commands.convert.ConvertImgPlus
ConvertIntArrayToDimensions<D extends Dimensions> - Interface in net.imagej.convert: Interface to describe Converters from native int[] arrays to Dimensions
ConvertIntArrayToFinalInterval - Class in net.imagej.convert: Converter from native int[] array to Dimensions Christian Dietz, University of Konstanz
ConvertIntArrayToFinalInterval() - Constructor for class net.imagej.convert.ConvertIntArrayToFinalInterval
ConvertListToFinalInterval - Class in net.imagej.convert: Converter for converting Lists to FinalInterval.
ConvertListToFinalInterval() - Constructor for class net.imagej.convert.ConvertListToFinalInterval
ConvertLongArrayToDimensions<D extends Dimensions> - Interface in net.imagej.convert: Interface to describe Converters from native long[] arrays to Dimensions
ConvertLongArrayToFinalInterval - Class in net.imagej.convert: Converter from native long[] array to Dimensions Christian Dietz, University of Konstanz
ConvertLongArrayToFinalInterval() - Constructor for class net.imagej.convert.ConvertLongArrayToFinalInterval
ConvertNamespace - Class in net.imagej.ops.convert: The convert namespace contains operations for converting between types.
ConvertNamespace() - Constructor for class net.imagej.ops.convert.ConvertNamespace
convertOMEROROI(TreeNode<?>, Interval) - Method in class net.imagej.omero.DefaultOMEROService
convertOMEROROI(TreeNode<?>, Interval) - Method in interface net.imagej.omero.OMEROService: Converts the given TreeNode to ROIData.
convertOMEROTable(Table<?, ?>) - Method in class net.imagej.omero.DefaultOMEROService
convertOMEROTable(Table<?, ?>) - Method in interface net.imagej.omero.OMEROService: Converts the given ImageJ table to an OMERO table, but does not save the table to the server.
ConvertRAIToIterableInterval - Class in net.imagej.convert: Converts RandomAccessibleInterval to IterableInterval using Views
ConvertRAIToIterableInterval() - Constructor for class net.imagej.convert.ConvertRAIToIterableInterval
ConvertToMask - Class in net.imagej.plugins.commands.overlay: Creates an Overlay representing the thresholded pixels of a Dataset.
ConvertToMask() - Constructor for class net.imagej.plugins.commands.overlay.ConvertToMask
ConvertTypes - Class in net.imagej.ops.convert: Converters for converting between Complex types
ConvertTypes.ComplexToBit<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertTypes.ComplexToCfloat32<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertTypes.ComplexToCfloat64<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertTypes.ComplexToFloat32<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertTypes.ComplexToFloat64<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertTypes.ComplexToInt16<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertTypes.ComplexToInt32<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertTypes.ComplexToInt64<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertTypes.ComplexToInt8<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertTypes.ComplexToUint12<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertTypes.ComplexToUint128<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertTypes.ComplexToUint16<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertTypes.ComplexToUint2<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertTypes.ComplexToUint32<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertTypes.ComplexToUint4<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertTypes.ComplexToUint64<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertTypes.ComplexToUint8<C extends ComplexType<C>> - Class in net.imagej.ops.convert
ConvertTypes.IntegerToBit<T extends IntegerType<T>> - Class in net.imagej.ops.convert
ConvertTypes.IntegerToInt16<T extends IntegerType<T>> - Class in net.imagej.ops.convert
ConvertTypes.IntegerToInt32<T extends IntegerType<T>> - Class in net.imagej.ops.convert
ConvertTypes.IntegerToInt64<T extends IntegerType<T>> - Class in net.imagej.ops.convert
ConvertTypes.IntegerToInt8<T extends IntegerType<T>> - Class in net.imagej.ops.convert
ConvertTypes.IntegerToUint12<T extends IntegerType<T>> - Class in net.imagej.ops.convert
ConvertTypes.IntegerToUint128<T extends IntegerType<T>> - Class in net.imagej.ops.convert
ConvertTypes.IntegerToUint16<T extends IntegerType<T>> - Class in net.imagej.ops.convert
ConvertTypes.IntegerToUint2<T extends IntegerType<T>> - Class in net.imagej.ops.convert
ConvertTypes.IntegerToUint32<T extends IntegerType<T>> - Class in net.imagej.ops.convert
ConvertTypes.IntegerToUint4<T extends IntegerType<T>> - Class in net.imagej.ops.convert
ConvertTypes.IntegerToUint64<T extends IntegerType<T>> - Class in net.imagej.ops.convert
ConvertTypes.IntegerToUint8<T extends IntegerType<T>> - Class in net.imagej.ops.convert
convexHull(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
convexHull(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
convexity(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
convexity(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
convexity(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
convexity(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
Convolve,K extends RealType<K>,O extends RealType<O>> - Class in net.imagej.ops.commands.convolve
Convolve() - Constructor for class net.imagej.ops.commands.convolve.Convolve
convolve(RandomAccessibleInterval, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval, RandomAccessibleInterval<K>, OutOfBoundsFactory<I, RandomAccessibleInterval>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval, RandomAccessibleInterval<K>, OutOfBoundsFactory<I, RandomAccessibleInterval>, O) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long...) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessible, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "convolve" operation on the given arguments.
ConvolveFFTC,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>> - Class in net.imagej.ops.filter.convolve: Convolve op for (@link RandomAccessibleInterval)
ConvolveFFTC() - Constructor for class net.imagej.ops.filter.convolve.ConvolveFFTC
ConvolveNaiveC,K extends RealType<K>,O extends RealType<O>> - Class in net.imagej.ops.filter.convolve: Convolves an image naively.
ConvolveNaiveC() - Constructor for class net.imagej.ops.filter.convolve.ConvolveNaiveC
ConvolveNaiveF,O extends RealType<O> & NativeType<O>,K extends RealType<K>> - Class in net.imagej.ops.filter.convolve: Function adapter for ConvolveFFTC.
ConvolveNaiveF() - Constructor for class net.imagej.ops.filter.convolve.ConvolveNaiveF
cooccurrenceMatrix(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.image.ImageNamespace
CooccurrenceMatrix2D<T extends RealType<T>> - Class in net.imagej.ops.image.cooccurrenceMatrix: Calculates coocccurrence matrix from an 2D-IterableInterval.
CooccurrenceMatrix2D() - Constructor for class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix2D
CooccurrenceMatrix3D<T extends RealType<T>> - Class in net.imagej.ops.image.cooccurrenceMatrix: Calculates coocccurrence matrix from an 3D-IterableInterval.
CooccurrenceMatrix3D() - Constructor for class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix3D
CoocHXY - Class in net.imagej.ops.features.haralick.helper: NB: Helper class.
CoocHXY() - Constructor for class net.imagej.ops.features.haralick.helper.CoocHXY
CoocMeanX - Class in net.imagej.ops.features.haralick.helper: NB: Helper class.
CoocMeanX() - Constructor for class net.imagej.ops.features.haralick.helper.CoocMeanX
CoocMeanY - Class in net.imagej.ops.features.haralick.helper: NB: Helper class.
CoocMeanY() - Constructor for class net.imagej.ops.features.haralick.helper.CoocMeanY
CoocPX - Class in net.imagej.ops.features.haralick.helper: NB: Helper class.
CoocPX() - Constructor for class net.imagej.ops.features.haralick.helper.CoocPX
CoocPXMinusY - Class in net.imagej.ops.features.haralick.helper: NB: Helper class.
CoocPXMinusY() - Constructor for class net.imagej.ops.features.haralick.helper.CoocPXMinusY
CoocPXPlusY - Class in net.imagej.ops.features.haralick.helper: NB: Helper class.
CoocPXPlusY() - Constructor for class net.imagej.ops.features.haralick.helper.CoocPXPlusY
CoocPY - Class in net.imagej.ops.features.haralick.helper: NB: Helper class.
CoocPY() - Constructor for class net.imagej.ops.features.haralick.helper.CoocPY
CoocStdX - Class in net.imagej.ops.features.haralick.helper: NB: Helper class.
CoocStdX() - Constructor for class net.imagej.ops.features.haralick.helper.CoocStdX
CoocStdY - Class in net.imagej.ops.features.haralick.helper: NB: Helper class.
CoocStdY() - Constructor for class net.imagej.ops.features.haralick.helper.CoocStdY
CoordinatesEquationOp<T,N extends Number> - Interface in net.imagej.ops.image.equation: An operation which computes image values based on coordinates.
copy() - Method in interface net.imagej.axis.CalibratedAxis: Creates an exact duplicate of this axis.
copy() - Method in class net.imagej.axis.ChapmanRichardsAxis
copy() - Method in class net.imagej.axis.DefaultLinearAxis
copy() - Method in class net.imagej.axis.EnumeratedAxis
copy() - Method in class net.imagej.axis.ExponentialAxis
copy() - Method in class net.imagej.axis.ExponentialRecoveryAxis
copy() - Method in class net.imagej.axis.GammaVariateAxis
copy() - Method in class net.imagej.axis.GaussianAxis
copy() - Method in class net.imagej.axis.IdentityAxis
copy() - Method in class net.imagej.axis.InverseRodbardAxis
copy() - Method in interface net.imagej.axis.LinearAxis
copy() - Method in class net.imagej.axis.LogLinearAxis
copy() - Method in class net.imagej.axis.PolynomialAxis
copy() - Method in class net.imagej.axis.PowerAxis
copy() - Method in class net.imagej.axis.RodbardAxis
copy() - Method in interface net.imagej.Dataset
copy() - Method in class net.imagej.DefaultDataset
copy() - Method in class net.imagej.ImgPlus
copy(Mesh, Mesh) - Static method in class net.imagej.mesh.Meshes: Copies a mesh into another mesh.
copy(O, I) - Method in class net.imagej.ops.convert.ConvertNamespace
Copy(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator
copy() - Method in class net.imagej.ops.image.integral.IntegralCursor
copy() - Method in class net.imagej.ops.morphology.thin.GuoHallThinningStrategy
copy() - Method in class net.imagej.ops.morphology.thin.HilditchThinningStrategy
copy() - Method in class net.imagej.ops.morphology.thin.MorphologicalThinningStrategy
copy() - Method in interface net.imagej.ops.morphology.thin.ThinningStrategy: Returns a seperate copy of this strategy.
copy() - Method in class net.imagej.ops.morphology.thin.ZhangSuenThinningStrategy
copy() - Method in interface net.imagej.ops.OpEnvironment: Gateway into ops of the "copy" namespace.
copy() - Method in class net.imagej.plugins.commands.assign.noisereduce.WithinRadiusOfPointSetOriginCondition
copy() - Method in class net.imagej.table.ResultsImg
copy() - Method in class net.imagej.types.BigComplex: Creates a new BigComplex whose values are taken from this BigComplex.
copy() - Method in class net.imagej.types.PreciseFixedComplexFloatType
copy() - Method in class net.imagej.types.PreciseFixedFloatType
copy() - Method in class net.imagej.types.UnboundedIntegerType
copy(InputStream, OutputStream, boolean, boolean) - Static method in class net.imagej.updater.Diff: Copy bytes from an InputStream to an OutputStream.
copy(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Static method in class net.imagej.util.Images
copyAndCleanImgPlusMetadata(Interval, ImgPlusMetadata, ImgPlusMetadata) - Static method in class net.imagej.ops.MetadataUtil: copies all ImgPlusMetadata from in to out.
copyAndCleanTypedSpace(Interval, CalibratedSpace<C>, CalibratedSpace<C>) - Static method in class net.imagej.ops.MetadataUtil: copies the CalibratedAxis attributes from in to out.
CopyArrayImg<T extends NativeType<T>,A extends ArrayDataAccess<A>> - Class in net.imagej.ops.copy: Copying ArrayImg into another ArrayImg
CopyArrayImg() - Constructor for class net.imagej.ops.copy.CopyArrayImg
copyClicked() - Method in class net.imagej.plugins.commands.display.HistogramPlot
copyColorTables(ImgPlus<?>, ImgPlus<?>) - Static method in class net.imagej.plugins.commands.restructure.RestructureUtils: Copies color table references from a source ImgPlus to a destination ImgPlus.
copyCursor() - Method in class net.imagej.ops.image.integral.IntegralCursor
copyData(ImgPlus<? extends RealType<?>>, ImgPlus<? extends RealType<?>>, AxisType, long, long, long) - Static method in class net.imagej.plugins.commands.restructure.RestructureUtils: Copies a region of data from a srcImgPlus to a dstImgPlus.
copyDataFrom(Dataset) - Method in interface net.imagej.Dataset: Changes a Dataset's internal data and metadata to match that from a given Dataset.
copyDataFrom(Dataset) - Method in class net.imagej.DefaultDataset
copyHyperVolume(ImgPlus<? extends RealType<?>>, long[], long[], ImgPlus<? extends RealType<?>>, long[], long[]) - Static method in class net.imagej.plugins.commands.restructure.RestructureUtils: Copies a hypervolume from a source ImgPlus to a destination ImgPlus.
CopyII<T> - Class in net.imagej.ops.copy: Copies an IterableInterval into another IterableInterval
CopyII() - Constructor for class net.imagej.ops.copy.CopyII
copyImageMetadata(ImageMetadata, ImageMetadata) - Static method in class net.imagej.ops.MetadataUtil: copies the ImageMetadata from in to out
CopyImg<T extends NativeType<T>> - Class in net.imagej.ops.copy: Copying Img into another Img.
CopyImg() - Constructor for class net.imagej.ops.copy.CopyImg
CopyImgLabeling<T extends IntegerType<T> & NativeType<T>,L> - Class in net.imagej.ops.copy: Copying ImgLabeling into another ImgLabeling
CopyImgLabeling() - Constructor for class net.imagej.ops.copy.CopyImgLabeling
copyImgPlusMetadata(ImgPlusMetadata, ImgPlusMetadata) - Static method in class net.imagej.ops.MetadataUtil: copies all ImgPlus metadata ImgPlusMetadata from in to out.
copyInto(Dataset) - Method in interface net.imagej.Dataset: Copies the dataset's pixels into the given target dataset.
copyInto(Dataset) - Method in class net.imagej.DefaultDataset
CopyLabelingMapping<L> - Class in net.imagej.ops.copy: Copies a LabelingMapping into another LabelingMapping
CopyLabelingMapping() - Constructor for class net.imagej.ops.copy.CopyLabelingMapping
copyName(Named, Named) - Static method in class net.imagej.ops.MetadataUtil: copies the name from in to out
CopyNamespace - Class in net.imagej.ops.copy: The copy namespace contains ops that copy data.
CopyNamespace() - Constructor for class net.imagej.ops.copy.CopyNamespace
CopyRAI<T> - Class in net.imagej.ops.copy: Copies a RandomAccessibleInterval into another RandomAccessibleInterval
CopyRAI() - Constructor for class net.imagej.ops.copy.CopyRAI
CopyRealTypes,O extends RealType<O>> - Class in net.imagej.ops.convert.copy: Copies the value of one RealType into another using double precision.
CopyRealTypes() - Constructor for class net.imagej.ops.convert.copy.CopyRealTypes
copySource(Sourced, Sourced) - Static method in class net.imagej.ops.MetadataUtil: copies the source attribute from in to out
CopyToSystem - Class in net.imagej.plugins.commands.app: Copies an ARGB image plane to the system clipboard for use by external programs.
CopyToSystem() - Constructor for class net.imagej.plugins.commands.app.CopyToSystem
CopyType<T extends Type<T>> - Class in net.imagej.ops.copy: Copy Type to another Type
CopyType() - Constructor for class net.imagej.ops.copy.CopyType
copyTypedSpace(CalibratedSpace<C>, CalibratedSpace<C>) - Static method in class net.imagej.ops.MetadataUtil: copies the CalibratedSpace attributes from in to out.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long...) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "correlate" operation on the given arguments.
CorrelateFFTC,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>> - Class in net.imagej.ops.filter.correlate: Correlate op for (@link RandomAccessibleInterval)
CorrelateFFTC() - Constructor for class net.imagej.ops.filter.correlate.CorrelateFFTC
correlation(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
correlation(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
Correlation3x3Operation - Class in net.imagej.plugins.commands.correlate: Correlation3x3Operation is used for general 3x3 correlation.
Correlation3x3Operation(Dataset, RealRect, double[]) - Constructor for class net.imagej.plugins.commands.correlate.Correlation3x3Operation: Constructor.
cos(double) - Method in class net.imagej.ops.math.MathNamespace
cos(O, I) - Method in class net.imagej.ops.math.MathNamespace
Cos() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Cos
cosh(double) - Method in class net.imagej.ops.math.MathNamespace
cosh(O, I) - Method in class net.imagej.ops.math.MathNamespace
Cosh() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Cosh
cot(O, I) - Method in class net.imagej.ops.math.MathNamespace
Cot() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Cot
coth(O, I) - Method in class net.imagej.ops.math.MathNamespace
Coth() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Coth
count - Variable in class net.imagej.updater.CommandLine.ConsoleUserInterface
count - Variable in class net.imagej.updater.util.Downloader
COUNT_BYTES - Static variable in class net.imagej.mesh.io.stl.STLMeshIO
create(long...) - Method in class net.imagej.DatasetFactory
create(Dimensions) - Method in class net.imagej.DatasetFactory
create(int[]) - Method in class net.imagej.DatasetFactory
create(long[], RealType<?>) - Method in class net.imagej.DatasetFactory: Deprecated.
create(Dimensions, RealType<?>) - Method in class net.imagej.DatasetFactory: Deprecated.
create(int[], RealType<?>) - Method in class net.imagej.DatasetFactory: Deprecated.
create(Supplier<RealType<?>>, long...) - Method in class net.imagej.DatasetFactory: Deprecated.
create(Supplier<RealType<?>>, Dimensions) - Method in class net.imagej.DatasetFactory: Deprecated.
create(Supplier<RealType<?>>, int[]) - Method in class net.imagej.DatasetFactory: Deprecated.
create(long...) - Method in class net.imagej.DatasetImgFactory
create(Dimensions) - Method in class net.imagej.DatasetImgFactory
create(int[]) - Method in class net.imagej.DatasetImgFactory
create(long[], T) - Method in class net.imagej.DatasetImgFactory: Deprecated.
create(long[], String, AxisType[], int, boolean, boolean) - Method in interface net.imagej.DatasetService: Creates a new dataset.
create(long[], String, AxisType[], int, boolean, boolean, boolean) - Method in interface net.imagej.DatasetService: Creates a new dataset.
create(T, long[], String, AxisType[]) - Method in interface net.imagej.DatasetService: Creates a new dataset.
create(T, long[], String, AxisType[], boolean) - Method in interface net.imagej.DatasetService: Creates a new dataset.
create(ImgFactory<T>, long[], String, AxisType[]) - Method in interface net.imagej.DatasetService: Creates a new dataset using the provided ImgFactory.
create(ImgPlus<T>) - Method in interface net.imagej.DatasetService: Creates a new dataset using the provided ImgPlus.
create(RandomAccessibleInterval<T>) - Method in interface net.imagej.DatasetService: Creates a new dataset using the provided RandomAccessibleInterval.
create(ImgFactory<T>, T, long[], String, AxisType[]) - Method in interface net.imagej.DatasetService: Deprecated.
Use DatasetService.create(ImgFactory, long[], String, AxisType[]) instead.
create(long[], String, AxisType[], int, boolean, boolean) - Method in class net.imagej.DefaultDatasetService
create(long[], String, AxisType[], int, boolean, boolean, boolean) - Method in class net.imagej.DefaultDatasetService
create(T, long[], String, AxisType[]) - Method in class net.imagej.DefaultDatasetService
create(T, long[], String, AxisType[], boolean) - Method in class net.imagej.DefaultDatasetService
create(ImgFactory<T>, long[], String, AxisType[]) - Method in class net.imagej.DefaultDatasetService
create(ImgPlus<T>) - Method in class net.imagej.DefaultDatasetService
create(RandomAccessibleInterval<T>) - Method in class net.imagej.DefaultDatasetService
create(ImgFactory<T>, T, long[], String, AxisType[]) - Method in class net.imagej.DefaultDatasetService: Deprecated.
create(String, String) - Method in class net.imagej.legacy.plugin.DefaultLegacyEditor
create(String, String) - Method in interface net.imagej.legacy.plugin.LegacyEditor
create(Module) - Static method in class net.imagej.legacy.plugin.MacroRecorderExcludedInputs
create(SearchResult) - Method in class net.imagej.legacy.search.HelpSearchActionFactory
create(SearchResult) - Method in class net.imagej.legacy.search.OpenTemplateSearchActionFactory
create(SearchResult) - Method in class net.imagej.legacy.search.SourceSearchActionFactory
create(ImgFactory<T>, Dimensions, T) - Static method in class net.imagej.ops.create.img.Imgs: Creates an Img.
create(Class<NS>, OpEnvironment) - Method in class net.imagej.ops.DefaultNamespaceService
create(Class<NS>, OpEnvironment) - Method in interface net.imagej.ops.NamespaceService: Creates a Namespace with the given op execution environment.
create() - Method in interface net.imagej.ops.OpEnvironment: Gateway into ops of the "create" namespace.
create(String, Object...) - Static method in class net.imagej.ops.OpRef: Creates a new op reference.
create(Type, Object...) - Static method in class net.imagej.ops.OpRef: Creates a new op reference.
create(SearchResult) - Method in class net.imagej.ops.search.RunOpSearchActionFactory
create(UpdateSite, String) - Static method in class net.imagej.updater.URLChange: Proposes a new URL for this update site.
createAffine(AffineTransform) - Static method in class net.imagej.omero.roi.ROIConverters: Converts an OMERO AffineTransform to an ImgLib2 AffineTransform2D.
createAffine(AffineTransform2D) - Static method in class net.imagej.omero.roi.ROIConverters: Converts an ImgLib2 AffineTransform2D to an OMERO AffineTransform.
createBoundaryTypeString(BoundaryType) - Static method in class net.imagej.omero.roi.ROIConverters
createDataset(String, ColorTable) - Method in class net.imagej.lut.DefaultLUTService
createDataset(String, ColorTable) - Method in interface net.imagej.lut.LUTService: Creates a new dataset showing the given ColorTable as a ramp.
createDataView(Data) - Method in class net.imagej.display.DefaultImageDisplayService
createDataView(Data) - Method in interface net.imagej.display.ImageDisplayService: Creates a new DataView wrapping the given data object.
createDataView(Data) - Method in class net.imagej.legacy.display.LegacyImageDisplayService
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter
createDefaultFigure() - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter: Creates a default figure of the type handled by this adapter.
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.PointJHotDrawOverlay
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.ThresholdJHotDrawAdapter
createDisplay(ImagePlus) - Method in class net.imagej.legacy.translate.DisplayCreator
createDisplay(ImagePlus) - Method in class net.imagej.legacy.translate.ImageTranslator: Creates a ImageDisplay from an ImagePlus.
createDisplayWindow(Display<?>) - Method in class net.imagej.legacy.ui.LegacyUI
createDomainArray() - Method in class net.imagej.omero.OMEROFormat.Reader
createFFTOutput(Dimensions, T) - Method in class net.imagej.ops.filter.FilterNamespace
createFFTOutput(Dimensions, T, boolean) - Method in class net.imagej.ops.filter.FilterNamespace
createFigure() - Method in class net.imagej.ui.swing.overlay.IJBezierTool
createFigure() - Method in class net.imagej.ui.swing.overlay.IJCreationTool
createFilterComputer(RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.PadAndRichardsonLucy: create a richardson lucy filter
createFilterComputer(RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter: This function is called after the RAIs and FFTs are set up and create the frequency filter computer.
createFilterComputer(RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.convolve.PadAndConvolveFFT: create a convolve filter computer
createFilterComputer(RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.correlate.PadAndCorrelateFFT: create a correlation filter computer
createHandler(OutputStream) - Method in class net.imagej.updater.XMLFileWriter
createHandles(int) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
createHandles(int) - Method in class net.imagej.ui.swing.overlay.PointFigure
createHandles(int) - Method in class net.imagej.ui.swing.overlay.PolygonFigure
createHandles(int) - Method in class net.imagej.ui.swing.overlay.PolylineFigure
createImageJColumn(TableDataColumn) - Static method in class net.imagej.omero.TableUtils
createImageJTable(TableDataColumn[]) - Static method in class net.imagej.omero.TableUtils
CreateImgFactoryFromImg<T> - Class in net.imagej.ops.create.imgFactory: Gets an ImgFactory for the given Img.
CreateImgFactoryFromImg() - Constructor for class net.imagej.ops.create.imgFactory.CreateImgFactoryFromImg
CreateImgFromDimsAndType<T extends NativeType<T>> - Class in net.imagej.ops.create.img: Creates an Img with the given Dimensions and NativeType.
CreateImgFromDimsAndType() - Constructor for class net.imagej.ops.create.img.CreateImgFromDimsAndType
CreateImgFromII<T extends NativeType<T>> - Class in net.imagej.ops.create.img: Create an Img from an IterableInterval using its type T.
CreateImgFromII() - Constructor for class net.imagej.ops.create.img.CreateImgFromII
CreateImgFromImg<T extends Type<T>> - Class in net.imagej.ops.create.img: Create an Img from another Img implementation using its Type and ImgFactory.
CreateImgFromImg() - Constructor for class net.imagej.ops.create.img.CreateImgFromImg
CreateImgFromInterval - Class in net.imagej.ops.create.img: Creates an Img from an Interval with no additional hints.
CreateImgFromInterval() - Constructor for class net.imagej.ops.create.img.CreateImgFromInterval
CreateImgFromRAI<T extends NativeType<T>> - Class in net.imagej.ops.create.img: Create an Img from a RandomAccessibleInterval using its type T.
CreateImgFromRAI() - Constructor for class net.imagej.ops.create.img.CreateImgFromRAI
CreateImgLabelingFromInterval<L,T extends IntegerType<T>> - Class in net.imagej.ops.create.imgLabeling: Creates an ImgLabeling from an Interval.
CreateImgLabelingFromInterval() - Constructor for class net.imagej.ops.create.imgLabeling.CreateImgLabelingFromInterval
createInEditor(String, String) - Method in class imagej.patcher.LegacyHooks: Deprecated.

Extension point to override ImageJ 1.x' editor.
createInEditor(String, String) - Method in class net.imagej.legacy.DefaultLegacyHooks: Creates the given file in the registered legacy editor, if any.
createInEditor(String, String) - Method in class net.imagej.patcher.LegacyHooks: Extension point to override ImageJ 1.x' editor.
CreateKernel2D<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernel: This Op takes a 2-D array of explicit values and creates a simple image, e.g.
CreateKernel2D() - Constructor for class net.imagej.ops.create.kernel.CreateKernel2D
CreateKernel2ndDerivBiGaussDoubleType - Class in net.imagej.ops.create.kernelBiGauss: Creates 2nd derivative of an isotropic BiGauss kernel of type DoubleType, uses DefaultCreateKernel2ndDerivBiGauss to do the job.
CreateKernel2ndDerivBiGaussDoubleType() - Constructor for class net.imagej.ops.create.kernelBiGauss.CreateKernel2ndDerivBiGaussDoubleType
CreateKernelBiGaussDoubleType - Class in net.imagej.ops.create.kernelBiGauss: Creates an isotropic BiGauss kernel of type DoubleType, uses DefaultCreateKernelBiGauss to do the job.
CreateKernelBiGaussDoubleType() - Constructor for class net.imagej.ops.create.kernelBiGauss.CreateKernelBiGaussDoubleType
CreateKernelGaborComplexDoubleType - Class in net.imagej.ops.create.kernelGabor: Creates a Gabor kernel of type ComplexDoubleType, uses DefaultCreateKernelGabor to do the job.
CreateKernelGaborComplexDoubleType() - Constructor for class net.imagej.ops.create.kernelGabor.CreateKernelGaborComplexDoubleType
CreateKernelGaborDoubleType - Class in net.imagej.ops.create.kernelGabor: Creates a Gabor kernel of type DoubleType, uses DefaultCreateKernelGabor to do the job.
CreateKernelGaborDoubleType() - Constructor for class net.imagej.ops.create.kernelGabor.CreateKernelGaborDoubleType
CreateKernelGaborIsotropic<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelGabor: Creates an isotropic Gabor kernel, i.e., with one sigma for all axes, and a period vector.
CreateKernelGaborIsotropic() - Constructor for class net.imagej.ops.create.kernelGabor.CreateKernelGaborIsotropic
CreateKernelGaborIsotropicComplexDoubleType - Class in net.imagej.ops.create.kernelGabor: Creates an isotropic Gabor kernel of type ComplexDoubleType, uses DefaultCreateKernelGabor to do the job.
CreateKernelGaborIsotropicComplexDoubleType() - Constructor for class net.imagej.ops.create.kernelGabor.CreateKernelGaborIsotropicComplexDoubleType
CreateKernelGaborIsotropicDoubleType - Class in net.imagej.ops.create.kernelGabor: Creates an isotropic Gabor kernel of type DoubleType, uses DefaultCreateKernelGabor to do the job.
CreateKernelGaborIsotropicDoubleType() - Constructor for class net.imagej.ops.create.kernelGabor.CreateKernelGaborIsotropicDoubleType
CreateKernelGaussDoubleType - Class in net.imagej.ops.create.kernelGauss: Creates a Gaussian kernel of type DoubleType.
CreateKernelGaussDoubleType() - Constructor for class net.imagej.ops.create.kernelGauss.CreateKernelGaussDoubleType
CreateKernelGaussSymmetric<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelGauss: Creates a symmetric Gaussian kernel.
CreateKernelGaussSymmetric() - Constructor for class net.imagej.ops.create.kernelGauss.CreateKernelGaussSymmetric
CreateKernelGaussSymmetricDoubleType - Class in net.imagej.ops.create.kernelGauss: Creates a symmetric Gaussian kernel of type DoubleType.
CreateKernelGaussSymmetricDoubleType() - Constructor for class net.imagej.ops.create.kernelGauss.CreateKernelGaussSymmetricDoubleType
CreateKernelLogDoubleType - Class in net.imagej.ops.create.kernelLog: Creates a log kernel of type DoubleType.
CreateKernelLogDoubleType() - Constructor for class net.imagej.ops.create.kernelLog.CreateKernelLogDoubleType
CreateKernelLogSymmetric<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelLog: Creates a Gaussian Kernel
CreateKernelLogSymmetric() - Constructor for class net.imagej.ops.create.kernelLog.CreateKernelLogSymmetric
CreateKernelLogSymmetricDoubleType - Class in net.imagej.ops.create.kernelLog: Creates a symmetric log kernel of type DoubleType.
CreateKernelLogSymmetricDoubleType() - Constructor for class net.imagej.ops.create.kernelLog.CreateKernelLogSymmetricDoubleType
CreateKernelSobel<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelSobel: Creates a separated sobel kernel.
CreateKernelSobel() - Constructor for class net.imagej.ops.create.kernelSobel.CreateKernelSobel
createLegacyImage(ImageDisplay) - Method in class net.imagej.legacy.translate.ImagePlusCreator
createLegacyImage(Dataset) - Method in class net.imagej.legacy.translate.ImagePlusCreator
createLegacyImage(Dataset, ImageDisplay) - Method in class net.imagej.legacy.translate.ImagePlusCreator
createLegacyImage(ImageDisplay) - Method in class net.imagej.legacy.translate.ImageTranslator: Creates an ImagePlus from a ImageDisplay.
createLegacyImage(Dataset) - Method in class net.imagej.legacy.translate.ImageTranslator
createLegacyImage(Dataset, ImageDisplay) - Method in class net.imagej.legacy.translate.ImageTranslator
CreateMask<T extends RealType<T>> - Class in net.imagej.plugins.commands.binary: Creates a new binary mask Dataset from an existing Dataset using the default thresholding method.
CreateMask() - Constructor for class net.imagej.plugins.commands.binary.CreateMask
CreateNamespace - Class in net.imagej.ops.create: The create namespace contains ops that create objects.
CreateNamespace() - Constructor for class net.imagej.ops.create.CreateNamespace
CreateNativeTypeFromClass<T extends NativeType<T>> - Class in net.imagej.ops.create.nativeType: Creates the NativeType given by the input Class.
CreateNativeTypeFromClass() - Constructor for class net.imagej.ops.create.nativeType.CreateNativeTypeFromClass
createNewImgPlus(Dataset, long[], AxisType[]) - Static method in class net.imagej.plugins.commands.restructure.RestructureUtils: Creates a new ImgPlus with specified dimensions and axes.
createNewImgPlus(ImgPlus<T>, long[], AxisType[]) - Static method in class net.imagej.plugins.commands.restructure.RestructureUtils: Creates a new ImgPlus with specified dimensions and axes.
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter
createNewOverlay() - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter: Creates a new overlay.
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.PointJHotDrawOverlay
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.ThresholdJHotDrawAdapter
createNormalizationImageSemiNonCirculant(Interval) - Method in class net.imagej.ops.deconvolve.NonCirculantNormalizationFactor
CreateObjectFromClass<T> - Class in net.imagej.ops.create.object: Instantiates an object given by the input Class.
CreateObjectFromClass() - Constructor for class net.imagej.ops.create.object.CreateObjectFromClass
createOMEROColumn(Column<?>, int) - Static method in class net.imagej.omero.TableUtils
createOutput(Img<T>) - Method in class net.imagej.ops.bufferfactories.ImgImgFactory
createOutput(Img<T>) - Method in class net.imagej.ops.bufferfactories.ImgImgSameTypeFactory
createOutput(Labeling<L>) - Method in class net.imagej.ops.bufferfactories.LabelingLabelingFactory
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToBit
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToCfloat32
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToCfloat64
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToFloat32
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToFloat64
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt16
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt32
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt64
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt8
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint12
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint128
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint16
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint2
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint32
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint4
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint64
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint8
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToBit
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt16
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt32
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt64
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt8
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint12
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint128
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint16
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint2
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint32
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint4
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint64
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint8
createOutput(ArrayImg<T, A>) - Method in class net.imagej.ops.copy.CopyArrayImg
createOutput(IterableInterval<T>) - Method in class net.imagej.ops.copy.CopyII
createOutput(Img<T>) - Method in class net.imagej.ops.copy.CopyImg
createOutput(ImgLabeling<L, T>) - Method in class net.imagej.ops.copy.CopyImgLabeling
createOutput(LabelingMapping<L>) - Method in class net.imagej.ops.copy.CopyLabelingMapping
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.copy.CopyRAI
createOutput(T) - Method in class net.imagej.ops.copy.CopyType
createOutput(IterableInterval<T>) - Method in class net.imagej.ops.features.haralick.AbstractHaralickFeature
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.features.hog.HistogramOfOrientedGradients2D
createOutput(RandomAccessibleInterval) - Method in class net.imagej.ops.features.lbp2d.DefaultLBP2D
createOutput(RandomAccessibleInterval) - Method in class net.imagej.ops.features.tamura2d.AbstractTamuraFeature
createOutput(IterableInterval) - Method in class net.imagej.ops.features.zernike.AbstractZernikeFeature
createOutput(RandomAccessibleInterval, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter: Create the output using the outFactory and outType if they exist.
createOutput(T) - Method in class net.imagej.ops.filter.addNoise.AddNoiseRealTypeCFI
createOutput(RandomAccessibleInterval, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.convolve.ConvolveNaiveF: Create the output using the outFactory and outType if they exist.
createOutput(RandomAccessibleInterval, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.convolve.PadAndConvolveFFTF: Create the output using the outFactory and outType if they exist.
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.derivative.PartialDerivativeRAI
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.dog.DefaultDoG
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.dog.DoGSingleSigmas
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.gauss.DefaultGaussRAI
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.gauss.GaussRAISingleSigma
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.sobel.SobelRAI
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.tubeness.DefaultTubeness
createOutput(I) - Method in class net.imagej.ops.geom.AbstractBoundarySizeConvexHull
createOutput(I) - Method in class net.imagej.ops.geom.AbstractBoxivity
createOutput(I) - Method in class net.imagej.ops.geom.AbstractConvexity
createOutput(I) - Method in class net.imagej.ops.geom.AbstractSizeConvexHull
createOutput(I) - Method in class net.imagej.ops.geom.AbstractSolidity
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultCircularity
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultEccentricity
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultElongation
createOutput(Pair<RealLocalizable, RealLocalizable>) - Method in class net.imagej.ops.geom.geom2d.DefaultFeretsAngle
createOutput(Pair<RealLocalizable, RealLocalizable>) - Method in class net.imagej.ops.geom.geom2d.DefaultFeretsDiameter
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultFeretsDiameterForAngle
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMajorAxis
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeretAngle
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeretDiameter
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeretAngle
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeretDiameter
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMinorAxis
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultPerimeterLength
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultRoundness
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultSizePolygon
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultVerticesCountConvexHullPolygon
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultVerticesCountPolygon
createOutput(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultCompactness
createOutput(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultMainElongation
createOutput(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultMedianElongation
createOutput(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultSparenessMesh
createOutput(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultSphericity
createOutput(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultSurfaceArea
createOutput(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultVerticesCountConvexHullMesh
createOutput(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultVerticesCountMesh
createOutput(RandomAccessibleInterval) - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransform
createOutput(RandomAccessibleInterval) - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransformCalibration
createOutput(RandomAccessibleInterval) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2D
createOutput(RandomAccessibleInterval) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2DCalibration
createOutput(RandomAccessibleInterval) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3D
createOutput(RandomAccessibleInterval) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3DCalibration
createOutput(String) - Method in class net.imagej.ops.image.equation.DefaultEquation
createOutput(RandomAccessibleInterval) - Method in class net.imagej.ops.image.integral.AbstractIntegralImg
createOutput(IterableInterval<T>) - Method in class net.imagej.ops.image.normalize.NormalizeIIFunction
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.watershed.Watershed
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.watershed.WatershedBinary
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.watershed.WatershedBinarySingleSigma
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.watershed.WatershedSeeded
createOutput(IterableInterval) - Method in class net.imagej.ops.imagemoments.AbstractImageMomentOp
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.labeling.cca.DefaultCCA
createOutput(ImgLabeling<L, I>, ImgLabeling<L, I>) - Method in class net.imagej.ops.labeling.MergeLabeling
createOutput(Vector3d, Quaterniondc) - Method in class net.imagej.ops.linalg.rotate.Rotate3d
createOutput(Vector3f, Quaternionfc) - Method in class net.imagej.ops.linalg.rotate.Rotate3f
createOutput(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.And
createOutput(T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Not
createOutput(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Or
createOutput(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Xor
createOutput(I) - Method in class net.imagej.ops.logic.If
createOutput(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.And
createOutput(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Or
createOutput(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Xor
createOutput(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.And
createOutput(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.Or
createOutput(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.Xor
createOutput(IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Add
createOutput(IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Divide
createOutput(IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Multiply
createOutput(IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Subtract
createOutput(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Add
createOutput(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Divide
createOutput(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Multiply
createOutput(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Subtract
createOutput(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Add
createOutput(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Divide
createOutput(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Multiply
createOutput(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Subtract
createOutput(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Add
createOutput(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Divide
createOutput(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Multiply
createOutput(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Subtract
createOutput(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.blackTopHat.ListBlackTopHat
createOutput(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.close.ListClose
createOutput(RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.dilate.DefaultDilate
createOutput(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.dilate.ListDilate
createOutput(RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.erode.DefaultErode
createOutput(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.erode.ListErode
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.extractHoles.DefaultExtractHolesFunction
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.fillHoles.DefaultFillHoles
createOutput(RandomAccessibleInterval<T>, Localizable) - Method in class net.imagej.ops.morphology.floodFill.DefaultFloodFill
createOutput(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.open.ListOpen
createOutput(RandomAccessibleInterval, Boolean) - Method in class net.imagej.ops.morphology.outline.Outline
createOutput(RandomAccessibleInterval<BitType>) - Method in class net.imagej.ops.morphology.thin.AbstractThin
createOutput(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.topHat.ListTopHat
createOutput(I1, I2) - Method in interface net.imagej.ops.special.BinaryOutputFactory: Create an output object given two inputs.
createOutput(I1, I2) - Method in class net.imagej.ops.special.chain.BHCFViaBHCF
createOutput(I) - Method in class net.imagej.ops.special.chain.UHCFViaUHCF
createOutput(I1) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCF
createOutput() - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCF
createOutput() - Method in interface net.imagej.ops.special.NullaryOutputFactory: Create an output object.
createOutput(I) - Method in interface net.imagej.ops.special.UnaryOutputFactory: Create an output object given some input.
createOutput(I) - Method in class net.imagej.ops.stats.AbstractStatsOp
createOutput(Iterable<T>) - Method in class net.imagej.ops.stats.IterableMax
createOutput(Iterable<T>) - Method in class net.imagej.ops.stats.IterableMin
createOutput(IterableInterval<T>) - Method in class net.imagej.ops.threshold.AbstractApplyThresholdImg
createOutput(Histogram1d<T>) - Method in class net.imagej.ops.threshold.AbstractComputeThresholdHistogram
createOutput(RandomAccessibleInterval) - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26N
createOutput(RandomAccessibleInterval) - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26NFloating
createOutput(RandomAccessibleInterval) - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection
CreateOutputFFTMethods<T> - Class in net.imagej.ops.filter.fft: Function that creates an output for FFTMethods FFT
CreateOutputFFTMethods() - Constructor for class net.imagej.ops.filter.fft.CreateOutputFFTMethods
createPixels(OMEROFormat.Metadata) - Method in class net.imagej.omero.DefaultOMEROSession
createPixels(OMEROFormat.Metadata) - Method in interface net.imagej.omero.OMEROSession: Obtains a raw pixels store for writing to a new image which will be associated with the given metadata.
createPosition() - Method in class net.imagej.Extents: Returns a Position object that can be used to iterate these Extents.
createRadialPolynom(int, int, double[][]) - Static method in class net.imagej.ops.features.zernike.helper.ZernikeComputer: Creates a radial polynom for zernike moment with order n and repitition m
createSampledImage(SamplingDefinition) - Method in class net.imagej.sampler.DefaultSamplerService
createSampledImage(SamplingDefinition) - Method in interface net.imagej.sampler.SamplerService: Creates an output ImageDisplay containing data from an input SamplingDefinition.
createSession(OMEROLocation) - Method in class net.imagej.omero.DefaultOMEROService
createSession(OMEROLocation) - Method in interface net.imagej.omero.OMEROService: Creates an OMEROSession.
CreateShortcut - Class in net.imagej.plugins.commands.app: This is a placeholder command for as yet unfinished Create Shortcut command.
CreateShortcut() - Constructor for class net.imagej.plugins.commands.app.CreateShortcut
createTypes(Type, Type, Type, Object...) - Static method in class net.imagej.ops.OpRef: Creates a new op reference.
createTypes(Collection<? extends Type>, Object...) - Static method in class net.imagej.ops.OpRef: Creates a new op reference.
createUser(String, String, String, String) - Method in class net.imagej.util.MediaWikiClient
createVariable() - Method in class net.imagej.types.BigComplex: Creates a new BigComplex initialized to (0,0).
createVariable() - Method in interface net.imagej.types.DataType: Returns a variable of the underlying NumericType wrapped by this DataType.
createVariable() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
createVariable() - Method in class net.imagej.types.DataType12BitUnsignedInteger
createVariable() - Method in class net.imagej.types.DataType16BitSignedInteger
createVariable() - Method in class net.imagej.types.DataType16BitUnsignedInteger
createVariable() - Method in class net.imagej.types.DataType1BitUnsignedInteger
createVariable() - Method in class net.imagej.types.DataType32BitSignedFloat
createVariable() - Method in class net.imagej.types.DataType32BitSignedInteger
createVariable() - Method in class net.imagej.types.DataType32BitUnsignedInteger
createVariable() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
createVariable() - Method in class net.imagej.types.DataType64BitSignedFloat
createVariable() - Method in class net.imagej.types.DataType64BitSignedInteger
createVariable() - Method in class net.imagej.types.DataType8BitSignedInteger
createVariable() - Method in class net.imagej.types.DataType8BitUnsignedInteger
createVariable() - Method in class net.imagej.types.DataTypeBoolean
createVariable() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
createVariable() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
createVariable() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
createVariable() - Method in class net.imagej.types.PreciseFixedComplexFloatType
createVariable() - Method in class net.imagej.types.PreciseFixedFloatType
createVariable() - Method in class net.imagej.types.UnboundedIntegerType
createWorker(IterableInterval<T>) - Method in class net.imagej.ops.create.img.CreateImgFromII
createWorker(Interval) - Method in class net.imagej.ops.create.img.CreateImgFromInterval
createWorker(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.create.img.CreateImgFromRAI
createWorker(double[], Integer) - Method in class net.imagej.ops.create.kernelBiGauss.CreateKernel2ndDerivBiGaussDoubleType
createWorker(double[], Integer) - Method in class net.imagej.ops.create.kernelBiGauss.CreateKernelBiGaussDoubleType
createWorker(double[], double[]) - Method in class net.imagej.ops.create.kernelGabor.CreateKernelGaborComplexDoubleType
createWorker(double[], double[]) - Method in class net.imagej.ops.create.kernelGabor.CreateKernelGaborDoubleType
createWorker(Double, double[]) - Method in class net.imagej.ops.create.kernelGabor.CreateKernelGaborIsotropicComplexDoubleType
createWorker(Double, double[]) - Method in class net.imagej.ops.create.kernelGabor.CreateKernelGaborIsotropicDoubleType
createWorker(double[]) - Method in class net.imagej.ops.create.kernelGauss.CreateKernelGaussDoubleType
createWorker(Double) - Method in class net.imagej.ops.create.kernelGauss.CreateKernelGaussSymmetricDoubleType
createWorker(double[]) - Method in class net.imagej.ops.create.kernelLog.CreateKernelLogDoubleType
createWorker(Double) - Method in class net.imagej.ops.create.kernelLog.CreateKernelLogSymmetricDoubleType
createWorker(Class<T>) - Method in class net.imagej.ops.create.nativeType.CreateNativeTypeFromClass
createWorker(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.dog.DoGVaryingSigmas
createWorker(IterableInterval<T>) - Method in class net.imagej.ops.image.normalize.NormalizeIIFunction
createWorker(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.extractHoles.DefaultExtractHolesFunction
createWorker(I1, I2) - Method in interface net.imagej.ops.special.chain.DelegatingBinaryOp
createWorker(I) - Method in interface net.imagej.ops.special.chain.DelegatingUnaryOp
creationFinished(Figure) - Method in class net.imagej.ui.swing.overlay.IJCreationTool
creationTool - Variable in class net.imagej.ui.swing.overlay.ToolDelegator
Credentials(String, String, String) - Constructor for class net.imagej.plugins.uploaders.webdav.NetrcParser.Credentials
crop(Rectangle) - Method in class net.imagej.omero.legacy.LazyOverlay
crop(int, int) - Method in class net.imagej.omero.legacy.LazyOverlay
crop(int, int, int, int, int, int) - Method in class net.imagej.omero.legacy.LazyOverlay
crop(ImgPlus<T>, Interval) - Method in class net.imagej.ops.transform.TransformNamespace: Executes the "crop" operation on the given arguments.
crop(ImgPlus<T>, Interval, boolean) - Method in class net.imagej.ops.transform.TransformNamespace: Executes the "crop" operation on the given arguments.
crop(RandomAccessibleInterval<T>, Interval) - Method in class net.imagej.ops.transform.TransformNamespace: Executes the "crop" operation on the given arguments.
crop(RandomAccessibleInterval<T>, Interval, boolean) - Method in class net.imagej.ops.transform.TransformNamespace: Executes the "crop" operation on the given arguments.
cropAtCenter(RandomAccessibleInterval<T>, int[]) - Static method in class net.imagej.ops.coloc.ShuffledView
cropAtMax(RandomAccessibleInterval<T>, int[]) - Static method in class net.imagej.ops.coloc.ShuffledView
cropAtMin(RandomAccessibleInterval<T>, int[]) - Static method in class net.imagej.ops.coloc.ShuffledView
CropImage - Class in net.imagej.plugins.commands.imglib: Replaces the pixels of an input Dataset by cropping in X + Y using its currently selected region.
CropImage() - Constructor for class net.imagej.plugins.commands.imglib.CropImage
CropImgPlus<T extends Type<T>> - Class in net.imagej.ops.transform.crop
CropImgPlus() - Constructor for class net.imagej.ops.transform.crop.CropImgPlus
CropRAI<T> - Class in net.imagej.ops.transform.crop
CropRAI() - Constructor for class net.imagej.ops.transform.crop.CropRAI
csc(O, I) - Method in class net.imagej.ops.math.MathNamespace
Csc() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Csc
csch(O, I) - Method in class net.imagej.ops.math.MathNamespace
Csch() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Csch
cubeRoot(double) - Method in class net.imagej.ops.math.MathNamespace
cubeRoot(O, I) - Method in class net.imagej.ops.math.MathNamespace
CubeRoot() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.CubeRoot
cuda - Variable in class net.imagej.tensorflow.TensorFlowVersion
cudnn - Variable in class net.imagej.tensorflow.TensorFlowVersion
current - Variable in class net.imagej.updater.FileObject
currentTimestamp() - Static method in class net.imagej.updater.util.UpdaterUtil
cursor() - Method in class net.imagej.DefaultDataset
cursor() - Method in class net.imagej.ImgPlus
cursor() - Method in class net.imagej.ops.slice.SlicesII
cursor() - Method in class net.imagej.table.ResultsImg
CursorBasedChunk - Class in net.imagej.ops.thread.chunker
CursorBasedChunk() - Constructor for class net.imagej.ops.thread.chunker.CursorBasedChunk
CustomOpEnvironment - Class in net.imagej.ops: A customized op execution environment.
CustomOpEnvironment(Context) - Constructor for class net.imagej.ops.CustomOpEnvironment: Creates an empty op context.
CustomOpEnvironment(OpEnvironment) - Constructor for class net.imagej.ops.CustomOpEnvironment: Creates an op context with the same configuration as the given parent environment.
CustomOpEnvironment(OpEnvironment, Collection<? extends OpInfo>) - Constructor for class net.imagej.ops.CustomOpEnvironment: Creates an op context with the same configuration as the given parent environment, plus the specified additional ops.
customOptionStart - Variable in class net.imagej.ui.swing.updater.ViewOptions
CYAN - Static variable in class net.imagej.display.ColorTables

D

d() - Method in class net.imagej.axis.Variable4Axis
D(long[], int) - Static method in class net.imagej.ops.threshold.Thresholds: The partial sum D from C.
DASH_LINE_STYLE - Static variable in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter
dashLineStyle - Static variable in class net.imagej.options.OptionsOverlay
Data - Interface in net.imagej: A data object is the superinterface for all types of N-dimensional data displayable in a cartesian space.
data() - Method in interface net.imagej.notebook.mime.MIMEObject: The encoded data.
data() - Method in class net.imagej.omero.roi.DefaultOMEROROICollection
data() - Method in class net.imagej.omero.roi.DefaultOMEROROIElement
data() - Method in class net.imagej.omero.roi.LazyROITree
data() - Method in interface net.imagej.roi.ROITree
DataCreatedEvent - Class in net.imagej.event: An event indicating a new Data has been created.
DataCreatedEvent(Data) - Constructor for class net.imagej.event.DataCreatedEvent
DataDeletedEvent - Class in net.imagej.event: An event indicating a Data has been deleted.
DataDeletedEvent(Data) - Constructor for class net.imagej.event.DataDeletedEvent
DataHarmonizer - Interface in net.imagej.legacy.translate: General interface for all data harmonizers.
DataModel() - Constructor for class net.imagej.ui.swing.updater.SitesDialog.DataModel
DataModifiedEvent - Class in net.imagej.event: An event indicating a Data has been modified somehow.
DataModifiedEvent(Data) - Constructor for class net.imagej.event.DataModifiedEvent
DataRange - Class in net.imagej.autoscale: DataRange allows one to construct a real interval between two real values.
DataRange(double, double) - Constructor for class net.imagej.autoscale.DataRange: Constructs a data range given two end points of an interval.
DataRestructuredEvent - Class in net.imagej.event: An event indicating a Data's dimensional extents may have changed.
DataRestructuredEvent(Data) - Constructor for class net.imagej.event.DataRestructuredEvent
Dataset - Interface in net.imagej: Dataset is the primary image data structure in ImageJ.
dataset() - Method in class net.imagej.ImageJ: Gets this application context's DatasetService.
dataset - Variable in class net.imagej.plugins.commands.app.EasterEgg
DatasetBatchInputProvider - Class in net.imagej.batch.input
DatasetBatchInputProvider() - Constructor for class net.imagej.batch.input.DatasetBatchInputProvider
DatasetCreatedEvent - Class in net.imagej.event: An event indicating a new Dataset has been created.
DatasetCreatedEvent(Dataset) - Constructor for class net.imagej.event.DatasetCreatedEvent
DatasetDeletedEvent - Class in net.imagej.event: An event indicating a Dataset has been deleted.
DatasetDeletedEvent(Dataset) - Constructor for class net.imagej.event.DatasetDeletedEvent
DatasetFactory - Class in net.imagej: A factory which produces Datasets.
DatasetFactory(RealType<?>, Dataset, DatasetImgFactory.ImgCreator, Function<Img<?>, Dataset>) - Constructor for class net.imagej.DatasetFactory
DatasetFigureView - Class in net.imagej.ui.swing.viewer.image: A figure view that links an ImageJ DatasetView to a JHotDraw ImageFigure.
DatasetFigureView(SwingImageDisplayViewer, DatasetView) - Constructor for class net.imagej.ui.swing.viewer.image.DatasetFigureView
DatasetImgFactory<T> - Class in net.imagej: Base class for ImgFactory objects of Dataset implementations.
DatasetImgFactory(T, Dataset, DatasetImgFactory.ImgCreator) - Constructor for class net.imagej.DatasetImgFactory
DatasetMATLABConverter - Class in net.imagej.matlab: Converter implementation for converting MatlabNumericArray to Dataset.
DatasetMATLABConverter() - Constructor for class net.imagej.matlab.DatasetMATLABConverter
DatasetRestructuredEvent - Class in net.imagej.event: An event indicating a Dataset's dimensional extents may have changed.
DatasetRestructuredEvent(Dataset) - Constructor for class net.imagej.event.DatasetRestructuredEvent
DatasetRGBChangedEvent - Class in net.imagej.event: An event indicating a Dataset's RGB settings have changed.
DatasetRGBChangedEvent(Dataset) - Constructor for class net.imagej.event.DatasetRGBChangedEvent
DatasetService - Interface in net.imagej: Interface for service that works with Datasets.
DatasetToImagePlusConverter - Class in net.imagej.legacy.convert: Converter implementation for converting Dataset to a ImagePlus.
DatasetToImagePlusConverter() - Constructor for class net.imagej.legacy.convert.DatasetToImagePlusConverter
DatasetToImgConverter - Class in net.imagej.convert: Simple Converter for unwrapping Datasets to their underlying Img.
DatasetToImgConverter() - Constructor for class net.imagej.convert.DatasetToImgConverter
DatasetToImgPlusConverter - Class in net.imagej.convert: Simple Converter for unwrapping Datasets to their underlying ImgPlus.
DatasetToImgPlusConverter() - Constructor for class net.imagej.convert.DatasetToImgPlusConverter
DatasetTypeChangedEvent - Class in net.imagej.event: An event indicating a Dataset's type has been changed.
DatasetTypeChangedEvent(Dataset) - Constructor for class net.imagej.event.DatasetTypeChangedEvent
DatasetUpdatedEvent - Class in net.imagej.event: An event indicating a Dataset's data has been updated.
DatasetUpdatedEvent(Dataset, boolean) - Constructor for class net.imagej.event.DatasetUpdatedEvent
DatasetUtils - Class in net.imagej.legacy.translate: Utility methods applicable to Datasets.
DatasetView - Interface in net.imagej.display: A linkage between a Dataset and a Display.
DatasetViewToHTMLConverter - Class in net.imagej.notebook.image: Converter from DatasetView to HTMLObject.
DatasetViewToHTMLConverter() - Constructor for class net.imagej.notebook.image.DatasetViewToHTMLConverter
dataToPanelCoords(RealCoords) - Method in class net.imagej.display.DefaultImageCanvas
dataToPanelCoords(RealCoords) - Method in interface net.imagej.display.ImageCanvas: Converts the given data coordinates into panel coordinates.
DataType<T extends NumericType<T>> - Interface in net.imagej.types: DataType represents information about pixel types.
DataType128BitSignedComplexFloat - Class in net.imagej.types: DataType definition for 128-bit complex float numbers.
DataType128BitSignedComplexFloat() - Constructor for class net.imagej.types.DataType128BitSignedComplexFloat
DataType12BitUnsignedInteger - Class in net.imagej.types: DataType definition for 12-bit unsigned integers.
DataType12BitUnsignedInteger() - Constructor for class net.imagej.types.DataType12BitUnsignedInteger
DataType16BitSignedInteger - Class in net.imagej.types: DataType definition for 16-bit signed integers.
DataType16BitSignedInteger() - Constructor for class net.imagej.types.DataType16BitSignedInteger
DataType16BitUnsignedInteger - Class in net.imagej.types: DataType definition for 16-bit unsigned integers.
DataType16BitUnsignedInteger() - Constructor for class net.imagej.types.DataType16BitUnsignedInteger
DataType1BitUnsignedInteger - Class in net.imagej.types: DataType definition for 1-bit unsigned integers.
DataType1BitUnsignedInteger() - Constructor for class net.imagej.types.DataType1BitUnsignedInteger
DataType32BitSignedFloat - Class in net.imagej.types: DataType definition for 32-bit floats.
DataType32BitSignedFloat() - Constructor for class net.imagej.types.DataType32BitSignedFloat
DataType32BitSignedInteger - Class in net.imagej.types: DataType definition for 32-bit signed integers.
DataType32BitSignedInteger() - Constructor for class net.imagej.types.DataType32BitSignedInteger
DataType32BitUnsignedInteger - Class in net.imagej.types: DataType definition for 32-bit unsigned integers.
DataType32BitUnsignedInteger() - Constructor for class net.imagej.types.DataType32BitUnsignedInteger
DataType64BitSignedComplexFloat - Class in net.imagej.types: DataType definition for 64-bit complex float numbers.
DataType64BitSignedComplexFloat() - Constructor for class net.imagej.types.DataType64BitSignedComplexFloat
DataType64BitSignedFloat - Class in net.imagej.types: DataType definition for 64-bit floats.
DataType64BitSignedFloat() - Constructor for class net.imagej.types.DataType64BitSignedFloat
DataType64BitSignedInteger - Class in net.imagej.types: DataType definition for 64-bit signed integers.
DataType64BitSignedInteger() - Constructor for class net.imagej.types.DataType64BitSignedInteger
DataType8BitSignedInteger - Class in net.imagej.types: DataType definition for 8-bit signed integers.
DataType8BitSignedInteger() - Constructor for class net.imagej.types.DataType8BitSignedInteger
DataType8BitUnsignedInteger - Class in net.imagej.types: DataType definition for 8-bit unsigned integers.
DataType8BitUnsignedInteger() - Constructor for class net.imagej.types.DataType8BitUnsignedInteger
DataTypeBoolean - Class in net.imagej.types: DataType definition for boolean.
DataTypeBoolean() - Constructor for class net.imagej.types.DataTypeBoolean
DataTypeService - Interface in net.imagej.types: Service interface that supports runtime discovery of and conversion between DataTypes.
DataTypeVariableBitSignedComplexFloat - Class in net.imagej.types: DataType definition for variable bit complex numbers.
DataTypeVariableBitSignedComplexFloat() - Constructor for class net.imagej.types.DataTypeVariableBitSignedComplexFloat
DataTypeVariableBitSignedFloat - Class in net.imagej.types: DataType definition for variable bit floats.
DataTypeVariableBitSignedFloat() - Constructor for class net.imagej.types.DataTypeVariableBitSignedFloat
DataTypeVariableBitSignedInteger - Class in net.imagej.types: DataType definition for variable bit signed integers.
DataTypeVariableBitSignedInteger() - Constructor for class net.imagej.types.DataTypeVariableBitSignedInteger
DataUpdatedEvent - Class in net.imagej.event: An event indicating a Data's data has been updated.
DataUpdatedEvent(Data) - Constructor for class net.imagej.event.DataUpdatedEvent
DataView - Interface in net.imagej.display: Interface for data views.
DataViewDeselectedEvent - Class in net.imagej.display.event: An event that indicates that a DataView is no longer selected.
DataViewDeselectedEvent(DataView) - Constructor for class net.imagej.display.event.DataViewDeselectedEvent
DataViewEvent - Class in net.imagej.display.event: An event indicating something has happened to a DataView.
DataViewEvent(DataView) - Constructor for class net.imagej.display.event.DataViewEvent
DataViewSelectedEvent - Class in net.imagej.display.event: Event fired when a DataView becomes selected.
DataViewSelectedEvent(DataView) - Constructor for class net.imagej.display.event.DataViewSelectedEvent
DataViewSelectionEvent - Class in net.imagej.display.event: An event that indicates that the selection status of a DataView has changed (i.e., it was either selected or deselected).
DataViewSelectionEvent(DataView, boolean) - Constructor for class net.imagej.display.event.DataViewSelectionEvent
DataViewUpdatedEvent - Class in net.imagej.display.event: This event signals that a DataView's appearance has changed.
DataViewUpdatedEvent(DataView) - Constructor for class net.imagej.display.event.DataViewUpdatedEvent
DbXmlFile() - Constructor for class net.imagej.updater.FilesUploader.DbXmlFile
deactivate(DrawingEditor) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
deactivateUpdateSite(UpdateSite) - Method in class net.imagej.updater.FilesCollection: Deactivates the given update site.
debug(String) - Method in class imagej.patcher.LegacyHooks: Deprecated.

Logs a debug message (to be shown only in debug mode).
debug - Static variable in class net.imagej.launcher.ClassLauncher
debug(String) - Method in class net.imagej.legacy.DefaultLegacyHooks
Debug() - Constructor for class net.imagej.legacy.LegacyCommandline.Debug
debug(String) - Method in class net.imagej.patcher.LegacyHooks: Logs a debug message (to be shown only in debug mode).
debug - Static variable in class net.imagej.patcher.MemoryProfiler
debug - Static variable in class net.imagej.patcher.PerformanceProfiler
debug(String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
debug(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
debug(String) - Method in class net.imagej.updater.util.UpdaterUserInterface
debug(String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
debugLogin(String) - Method in class net.imagej.plugins.uploaders.ssh.SSHFileUploader
dec() - Method in class net.imagej.types.PreciseFixedFloatType
dec() - Method in class net.imagej.types.UnboundedIntegerType
decode(byte[]) - Static method in class net.imagej.notebook.Images: Converts the given byte array into a BufferedImage.
deconvolve() - Method in interface net.imagej.ops.OpEnvironment: Gateway into ops of the "deconvolve" namespace.
DeconvolveNamespace - Class in net.imagej.ops.deconvolve: The deconvolve namespace contains deconvolution operations.
DeconvolveNamespace() - Constructor for class net.imagej.ops.deconvolve.DeconvolveNamespace
decrementReferences() - Method in class net.imagej.AbstractData
decrementReferences() - Method in interface net.imagej.Data: Subtracts from the data object's reference count.
Default,O extends Type<O>> - Class in net.imagej.ops.logic: An Op that sets the output to the defaultVal iff the input is evaluated as false.
Default() - Constructor for class net.imagej.ops.logic.Default
DEFAULT_METHOD - Static variable in class net.imagej.plugins.commands.binary.Binarize
DEFAULT_UPDATE_SITE - Static variable in class net.imagej.updater.FilesCollection
DefaultAddDimensionView<T> - Class in net.imagej.ops.transform.addDimensionView: Wraps the Views.addDimension(RandomAccessible) method.
DefaultAddDimensionView() - Constructor for class net.imagej.ops.transform.addDimensionView.DefaultAddDimensionView
DefaultAnimationService - Class in net.imagej.animation: Default service for working with Animations.
DefaultAnimationService() - Constructor for class net.imagej.animation.DefaultAnimationService
DefaultASCII<T extends RealType<T>> - Class in net.imagej.ops.image.ascii: Generates an ASCII version of an image.
DefaultASCII() - Constructor for class net.imagej.ops.image.ascii.DefaultASCII
DefaultASM<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Implementation of Angular Second Moment Haralick Feature
DefaultASM() - Constructor for class net.imagej.ops.features.haralick.DefaultASM
DefaultAutoscaleMethod<T extends RealType<T>> - Class in net.imagej.autoscale: Computes a data range from the entire set of values in an IterableInterval.
DefaultAutoscaleMethod() - Constructor for class net.imagej.autoscale.DefaultAutoscaleMethod
DefaultAutoscaleService - Class in net.imagej.autoscale: Default service for working with autoscale methods.
DefaultAutoscaleService() - Constructor for class net.imagej.autoscale.DefaultAutoscaleService
DefaultAxisType - Class in net.imagej.axis: Default AxisType implementation.
DefaultAxisType(String) - Constructor for class net.imagej.axis.DefaultAxisType: Creates a non-spatial AxisType with the given label
DefaultAxisType(String, boolean) - Constructor for class net.imagej.axis.DefaultAxisType: Creates a new AxisType with the given label and spatial status.
DefaultBilateral,O extends RealType<O>> - Class in net.imagej.ops.filter.bilateral: Performs a bilateral filter on an image.
DefaultBilateral() - Constructor for class net.imagej.ops.filter.bilateral.DefaultBilateral
DefaultBoundarySizeConvexHullPolygon - Class in net.imagej.ops.geom.geom2d
DefaultBoundarySizeConvexHullPolygon() - Constructor for class net.imagej.ops.geom.geom2d.DefaultBoundarySizeConvexHullPolygon
DefaultBoundingBox - Class in net.imagej.ops.geom.geom2d: Generic implementation of geom.boundingBox.
DefaultBoundingBox() - Constructor for class net.imagej.ops.geom.geom2d.DefaultBoundingBox
DefaultBoxivityMesh - Class in net.imagej.ops.geom.geom3d
DefaultBoxivityMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultBoxivityMesh
DefaultBoxivityPolygon - Class in net.imagej.ops.geom.geom2d
DefaultBoxivityPolygon() - Constructor for class net.imagej.ops.geom.geom2d.DefaultBoxivityPolygon
DefaultCalibratedRealInterval - Class in net.imagej.interval: Default implementation of CalibratedRealInterval.
DefaultCalibratedRealInterval(RealInterval) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedRealInterval(RealInterval, CalibratedAxis...) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedRealInterval(RealInterval, List<CalibratedAxis>) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedRealInterval(double[]) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedRealInterval(double[], CalibratedAxis...) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedRealInterval(double[], List<CalibratedAxis>) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedRealInterval(double[], double[]) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedRealInterval(double[], double[], CalibratedAxis...) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedRealInterval(double[], double[], List<CalibratedAxis>) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedSpace - Class in net.imagej.space: Default implementation of CalibratedSpace.
DefaultCalibratedSpace(int) - Constructor for class net.imagej.space.DefaultCalibratedSpace: Constructs a new calibrated space of the given dimensionality, with default IdentityAxis axes of unknown type (Axes.unknown()).
DefaultCalibratedSpace(CalibratedAxis...) - Constructor for class net.imagej.space.DefaultCalibratedSpace: Constructs a new calibrated space with the given axes.
DefaultCalibratedSpace(List<CalibratedAxis>) - Constructor for class net.imagej.space.DefaultCalibratedSpace: Constructs a new calibrated space with the given axes.
DefaultCCA<T extends IntegerType<T>,L,I extends IntegerType> - Class in net.imagej.ops.labeling.cca: Default Implementation wrapping ConnectedComponents of ImgLib2-algorithms.
DefaultCCA() - Constructor for class net.imagej.ops.labeling.cca.DefaultCCA
DefaultCenterOfGravity<T extends RealType<T>> - Class in net.imagej.ops.geom: This Op computes the center of gravity of a IterableRegion (Label).
DefaultCenterOfGravity() - Constructor for class net.imagej.ops.geom.DefaultCenterOfGravity
DefaultCentralMoment00,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments: Op to calculate the imageMoments.centralMoment00.
DefaultCentralMoment00() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment00
DefaultCentralMoment01,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments: Op to calculate the imageMoments.centralMoment01 directly.
DefaultCentralMoment01() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment01
DefaultCentralMoment02,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments: Op to calculate the imageMoments.centralMoment02.
DefaultCentralMoment02() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment02
DefaultCentralMoment03,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments: Op to calculate the imageMoments.centralMoment03 using
DefaultCentralMoment03() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment03
DefaultCentralMoment10,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments: Op to calculate the imageMoments.centralMoment10 directly.
DefaultCentralMoment10() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment10
DefaultCentralMoment11,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments: Op to calculate the imageMoments.centralMoment11.
DefaultCentralMoment11() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment11
DefaultCentralMoment12,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments: Op to calculate the imageMoments.centralMoment12.
DefaultCentralMoment12() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment12
DefaultCentralMoment20,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments: Op to calculate the imageMoments.centralMoment20.
DefaultCentralMoment20() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment20
DefaultCentralMoment21,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments: Op to calculate the imageMoments.centralMoment21.
DefaultCentralMoment21() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment21
DefaultCentralMoment30,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments: Op to calculate the imageMoments.centralMoment30.
DefaultCentralMoment30() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment30
DefaultChunker - Class in net.imagej.ops.thread.chunker: Simple default implementation of a ChunkerOp.
DefaultChunker() - Constructor for class net.imagej.ops.thread.chunker.DefaultChunker
DefaultCircularity - Class in net.imagej.ops.geom.geom2d: Generic implementation of geom.circularity.
DefaultCircularity() - Constructor for class net.imagej.ops.geom.geom2d.DefaultCircularity
DefaultClusterPromenence<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Implementation of Cluster Promenence Haralick Feature
DefaultClusterPromenence() - Constructor for class net.imagej.ops.features.haralick.DefaultClusterPromenence
DefaultClusterShade<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Implementation of Cluster Shade Haralick Feature
DefaultClusterShade() - Constructor for class net.imagej.ops.features.haralick.DefaultClusterShade
DefaultCoarsenessFeature,O extends RealType<O>> - Class in net.imagej.ops.features.tamura2d: Implementation of Tamura's Coarseness feature
DefaultCoarsenessFeature() - Constructor for class net.imagej.ops.features.tamura2d.DefaultCoarsenessFeature
DefaultCollapse2CompositeIntervalView<T> - Class in net.imagej.ops.transform.collapseView: Wraps the Views.collapse(RandomAccessibleInterval) method.
DefaultCollapse2CompositeIntervalView() - Constructor for class net.imagej.ops.transform.collapseView.DefaultCollapse2CompositeIntervalView
DefaultCollapse2CompositeView<T> - Class in net.imagej.ops.transform.collapseView: Wraps the Views.collapse(RandomAccessible) method.
DefaultCollapse2CompositeView() - Constructor for class net.imagej.ops.transform.collapseView.DefaultCollapse2CompositeView
DefaultCollapseNumeric2CompositeIntervalView<T extends NumericType<T>> - Class in net.imagej.ops.transform.collapseNumericView: Wraps the Views.collapseNumeric(RandomAccessibleInterval) method.
DefaultCollapseNumeric2CompositeIntervalView() - Constructor for class net.imagej.ops.transform.collapseNumericView.DefaultCollapseNumeric2CompositeIntervalView
DefaultCollapseNumeric2CompositeView<T extends NumericType<T>> - Class in net.imagej.ops.transform.collapseNumericView: Wraps the Views.collapseNumeric(RandomAccessible, int) method.
DefaultCollapseNumeric2CompositeView() - Constructor for class net.imagej.ops.transform.collapseNumericView.DefaultCollapseNumeric2CompositeView
DefaultCollapseReal2CompositeIntervalView<T extends RealType<T>> - Class in net.imagej.ops.transform.collapseRealView: Wraps the Views.collapseReal(RandomAccessibleInterval) method.
DefaultCollapseReal2CompositeIntervalView() - Constructor for class net.imagej.ops.transform.collapseRealView.DefaultCollapseReal2CompositeIntervalView
DefaultCollapseReal2CompositeView<T extends RealType<T>> - Class in net.imagej.ops.transform.collapseRealView: Wraps the Views.collapseReal(RandomAccessible, int) method.
DefaultCollapseReal2CompositeView() - Constructor for class net.imagej.ops.transform.collapseRealView.DefaultCollapseReal2CompositeView
DefaultCompactness - Class in net.imagej.ops.geom.geom3d: Generic implementation of Ops.Geometric.Compactness.
DefaultCompactness() - Constructor for class net.imagej.ops.geom.geom3d.DefaultCompactness
DefaultComputeFFTSize - Class in net.imagej.ops.filter.fftSize: Op that calculates FFT fast sizes according to the following logic.
DefaultComputeFFTSize() - Constructor for class net.imagej.ops.filter.fftSize.DefaultComputeFFTSize
DefaultConcatenateView<T> - Class in net.imagej.ops.transform.concatenateView: Wraps the Views.concatenate(int, List) method.
DefaultConcatenateView() - Constructor for class net.imagej.ops.transform.concatenateView.DefaultConcatenateView
DefaultContour> - Class in net.imagej.ops.geom.geom2d: Generic implementation of geom.contour.
DefaultContour() - Constructor for class net.imagej.ops.geom.geom2d.DefaultContour
DefaultContrast<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Implementation of texture contrast haralick feature.
DefaultContrast() - Constructor for class net.imagej.ops.features.haralick.DefaultContrast
DefaultContrastFeature,O extends RealType<O>> - Class in net.imagej.ops.features.tamura2d: Default implementation of tamura feature contrast.
DefaultContrastFeature() - Constructor for class net.imagej.ops.features.tamura2d.DefaultContrastFeature
DefaultConvexHull2D - Class in net.imagej.ops.geom.geom2d: Generic implementation of geom.convexHull.
DefaultConvexHull2D() - Constructor for class net.imagej.ops.geom.geom2d.DefaultConvexHull2D
DefaultConvexHull3D - Class in net.imagej.ops.geom.geom3d: This quickhull implementation is based on the paper "The Quickhull Algorithm for Convex Hulls" by Barber, Dobkin and Huhdanpaa (http://dpd.cs.princeton.edu/Papers/BarberDobkinHuhdanpaa.pdf).
DefaultConvexHull3D() - Constructor for class net.imagej.ops.geom.geom3d.DefaultConvexHull3D
DefaultConvexityMesh - Class in net.imagej.ops.geom.geom3d
DefaultConvexityMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultConvexityMesh
DefaultConvexityPolygon - Class in net.imagej.ops.geom.geom2d
DefaultConvexityPolygon() - Constructor for class net.imagej.ops.geom.geom2d.DefaultConvexityPolygon
DefaultCoordinatesEquation<T extends RealType<T>,N extends Number> - Class in net.imagej.ops.image.equation: An equation operation which computes image values from coordinates using another op.
DefaultCoordinatesEquation() - Constructor for class net.imagej.ops.image.equation.DefaultCoordinatesEquation
DefaultCorrelation<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Implementation of texture correlation haralick feature based on http://earlglynn.github.io/RNotes/package/EBImage/Haralick-Textural-Features.html .
DefaultCorrelation() - Constructor for class net.imagej.ops.features.haralick.DefaultCorrelation
DefaultCreateImgFactory<T extends NativeType<T>> - Class in net.imagej.ops.create.imgFactory: Default implementation of the "create.imgFactory" op.
DefaultCreateImgFactory() - Constructor for class net.imagej.ops.create.imgFactory.DefaultCreateImgFactory
DefaultCreateImgLabeling<L,T extends IntegerType<T>> - Class in net.imagej.ops.create.imgLabeling: Default implementation of the "create.imgLabeling" op.
DefaultCreateImgLabeling() - Constructor for class net.imagej.ops.create.imgLabeling.DefaultCreateImgLabeling
DefaultCreateImgPlus<T> - Class in net.imagej.ops.create.imgPlus: Default implementation of the "create.imgPlus" op.
DefaultCreateImgPlus() - Constructor for class net.imagej.ops.create.imgPlus.DefaultCreateImgPlus
DefaultCreateIntegerType - Class in net.imagej.ops.create.integerType: Create an IntegerType with at least maxValue maximum.
DefaultCreateIntegerType() - Constructor for class net.imagej.ops.create.integerType.DefaultCreateIntegerType
DefaultCreateKernel2ndDerivBiGauss<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelBiGauss: Creates 2nd derivative of an isotropic BiGauss kernel with the pair of sigmas specification.
DefaultCreateKernel2ndDerivBiGauss() - Constructor for class net.imagej.ops.create.kernelBiGauss.DefaultCreateKernel2ndDerivBiGauss
DefaultCreateKernelBiGauss<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelBiGauss: Creates an isotropic BiGauss kernel with the pair of sigmas specification.
DefaultCreateKernelBiGauss() - Constructor for class net.imagej.ops.create.kernelBiGauss.DefaultCreateKernelBiGauss
DefaultCreateKernelGabor<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelGabor: Creates a Gabor kernel with specifications for individual sigma per axis, and a period vector.
DefaultCreateKernelGabor() - Constructor for class net.imagej.ops.create.kernelGabor.DefaultCreateKernelGabor
DefaultCreateKernelGauss<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelGauss: Creates a Gaussian Kernel
DefaultCreateKernelGauss() - Constructor for class net.imagej.ops.create.kernelGauss.DefaultCreateKernelGauss
DefaultCreateKernelGibsonLanni<T extends ComplexType<T> & NativeType<T>> - Class in net.imagej.ops.create.kernelDiffraction: Creates a Gibson Lanni Kernel.
DefaultCreateKernelGibsonLanni() - Constructor for class net.imagej.ops.create.kernelDiffraction.DefaultCreateKernelGibsonLanni
DefaultCreateKernelLog<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelLog: Laplacian of Gaussian filter ported from fiji.plugin.trackmate.detection.DetectionUtil.
DefaultCreateKernelLog() - Constructor for class net.imagej.ops.create.kernelLog.DefaultCreateKernelLog
DefaultCreateLabelingMapping<L> - Class in net.imagej.ops.create.labelingMapping: Create a LabelingMapping which can store at least maxNumSets different Sets
DefaultCreateLabelingMapping() - Constructor for class net.imagej.ops.create.labelingMapping.DefaultCreateLabelingMapping
DefaultCreateNativeType - Class in net.imagej.ops.create.nativeType: Default implementation of the "create.nativeType" op.
DefaultCreateNativeType() - Constructor for class net.imagej.ops.create.nativeType.DefaultCreateNativeType
DefaultDataset - Class in net.imagej: Default implementation of Dataset.
DefaultDataset(Context, ImgPlus<? extends RealType<?>>) - Constructor for class net.imagej.DefaultDataset
DefaultDatasetService - Class in net.imagej: Default service for working with Datasets.
DefaultDatasetService() - Constructor for class net.imagej.DefaultDatasetService
DefaultDatasetView - Class in net.imagej.display: A view into a Dataset, for use with a ImageDisplay.
DefaultDatasetView() - Constructor for class net.imagej.display.DefaultDatasetView
DefaultDataTypeService - Class in net.imagej.types: The default implementation of the DataTypeService.
DefaultDataTypeService() - Constructor for class net.imagej.types.DefaultDataTypeService
DefaultDerivativeGauss<T extends RealType<T>> - Class in net.imagej.ops.filter.derivativeGauss: Performs the 2-D partial derivative Gaussian kernel convolutions on an image, at a particular point.
DefaultDerivativeGauss() - Constructor for class net.imagej.ops.filter.derivativeGauss.DefaultDerivativeGauss
DefaultDetectJunctions - Class in net.imagej.ops.segment.detectJunctions: Finds the junctions between a ArrayList of WritablePolyline, intended to be used optionally after running DefaultDetectRidges but applicable to all groups of polylines.
DefaultDetectJunctions() - Constructor for class net.imagej.ops.segment.detectJunctions.DefaultDetectJunctions
DefaultDetectRidges<T extends RealType<T>> - Class in net.imagej.ops.segment.detectRidges: Performs the Ridge Detection algorithm on a 2-Dimensional, gray-scale image.
DefaultDetectRidges() - Constructor for class net.imagej.ops.segment.detectRidges.DefaultDetectRidges
DefaultDifferenceEntropy<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Implementation of Difference Entropy Haralick Feature
DefaultDifferenceEntropy() - Constructor for class net.imagej.ops.features.haralick.DefaultDifferenceEntropy
DefaultDifferenceVariance<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Implementation of Difference Variance Haralick Feature
DefaultDifferenceVariance() - Constructor for class net.imagej.ops.features.haralick.DefaultDifferenceVariance
DefaultDilate<T extends RealType<T>> - Class in net.imagej.ops.morphology.dilate: Computes the dilation of a RandomAccessibleInterval using a single Shape.
DefaultDilate() - Constructor for class net.imagej.ops.morphology.dilate.DefaultDilate
DefaultDirectionalityFeature,O extends RealType<O>> - Class in net.imagej.ops.features.tamura2d: Implementation of Tamura's Directionality Feature
DefaultDirectionalityFeature() - Constructor for class net.imagej.ops.features.tamura2d.DefaultDirectionalityFeature
DefaultDistanceTransform,T extends RealType<T>> - Class in net.imagej.ops.image.distancetransform: Computes a distance transform, i.e.
DefaultDistanceTransform() - Constructor for class net.imagej.ops.image.distancetransform.DefaultDistanceTransform
DefaultDistanceTransformCalibration,T extends RealType<T>> - Class in net.imagej.ops.image.distancetransform: Computes a distance transform, i.e.
DefaultDistanceTransformCalibration() - Constructor for class net.imagej.ops.image.distancetransform.DefaultDistanceTransformCalibration
DefaultDoG<T extends NumericType<T> & NativeType<T>> - Class in net.imagej.ops.filter.dog: Low-level difference of Gaussians (DoG) implementation which leans on other ops to do the work.
DefaultDoG() - Constructor for class net.imagej.ops.filter.dog.DefaultDoG
DefaultDropSingletonDimensionsView<T> - Class in net.imagej.ops.transform.dropSingletonDimensionsView: Wraps the Views.dropSingletonDimensions(RandomAccessibleInterval) method.
DefaultDropSingletonDimensionsView() - Constructor for class net.imagej.ops.transform.dropSingletonDimensionsView.DefaultDropSingletonDimensionsView
DefaultEccentricity - Class in net.imagej.ops.geom.geom2d: Generic implementation of geom.eccentricity.
DefaultEccentricity() - Constructor for class net.imagej.ops.geom.geom2d.DefaultEccentricity
DefaultElongation - Class in net.imagej.ops.geom.geom2d: Generic implementation of geom.mainElongation based on http://www.math.uci.edu/icamp/summer/research_11/park/ shape_descriptors_survey.pdf.
DefaultElongation() - Constructor for class net.imagej.ops.geom.geom2d.DefaultElongation
DefaultEntropy<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Implementation of Entropy Haralick Feature Definition: -( sum_{i=1}^q sum_{j=1}^q c(i,j) log(c(i,j)) )
DefaultEntropy() - Constructor for class net.imagej.ops.features.haralick.DefaultEntropy
DefaultEquation<T extends RealType<T>> - Class in net.imagej.ops.image.equation: Computes an image using an equation.
DefaultEquation() - Constructor for class net.imagej.ops.image.equation.DefaultEquation
DefaultErode<T extends RealType<T>> - Class in net.imagej.ops.morphology.erode: Computes the erosion of a RandomAccessibleInterval using a single Shape.
DefaultErode() - Constructor for class net.imagej.ops.morphology.erode.DefaultErode
DefaultEval - Class in net.imagej.ops.eval: Evaluates an expression.
DefaultEval() - Constructor for class net.imagej.ops.eval.DefaultEval
DefaultExtendBorderView<T,F extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.transform.extendBorderView: Wraps the Views.extendBorder(RandomAccessibleInterval) method.
DefaultExtendBorderView() - Constructor for class net.imagej.ops.transform.extendBorderView.DefaultExtendBorderView
DefaultExtendMirrorDoubleView<T,F extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.transform.extendMirrorDoubleView: Wraps the Views.extendMirrorDouble(RandomAccessibleInterval) method.
DefaultExtendMirrorDoubleView() - Constructor for class net.imagej.ops.transform.extendMirrorDoubleView.DefaultExtendMirrorDoubleView
DefaultExtendMirrorSingleView<T,F extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.transform.extendMirrorSingleView: Wraps the Views.extendMirrorSingle(RandomAccessibleInterval) method.
DefaultExtendMirrorSingleView() - Constructor for class net.imagej.ops.transform.extendMirrorSingleView.DefaultExtendMirrorSingleView
DefaultExtendPeriodicView<T,F extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.transform.extendPeriodicView: Wraps the Views.extendPeriodic(RandomAccessibleInterval) method.
DefaultExtendPeriodicView() - Constructor for class net.imagej.ops.transform.extendPeriodicView.DefaultExtendPeriodicView
DefaultExtendRandomView<T extends RealType<T>,F extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.transform.extendRandomView: Wraps the Views.extendRandom(RandomAccessibleInterval, double, double) method.
DefaultExtendRandomView() - Constructor for class net.imagej.ops.transform.extendRandomView.DefaultExtendRandomView
DefaultExtendValueView<T extends Type<T>,F extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.transform.extendValueView: Wraps the Views.extendValue(RandomAccessibleInterval, Type) method.
DefaultExtendValueView() - Constructor for class net.imagej.ops.transform.extendValueView.DefaultExtendValueView
DefaultExtendView<T,F extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.transform.extendView: Wraps the Views.extend(RandomAccessibleInterval, OutOfBoundsFactory) method.
DefaultExtendView() - Constructor for class net.imagej.ops.transform.extendView.DefaultExtendView
DefaultExtendZeroView<T extends NumericType<T>,F extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.transform.extendZeroView: Wraps the Views.extendZero(RandomAccessibleInterval) method.
DefaultExtendZeroView() - Constructor for class net.imagej.ops.transform.extendZeroView.DefaultExtendZeroView
DefaultExtractHolesComputer<T extends BooleanType<T>> - Class in net.imagej.ops.morphology.extractHoles: Extracts the holes from a binary image.
DefaultExtractHolesComputer() - Constructor for class net.imagej.ops.morphology.extractHoles.DefaultExtractHolesComputer
DefaultExtractHolesFunction<T extends BooleanType<T>> - Class in net.imagej.ops.morphology.extractHoles
DefaultExtractHolesFunction() - Constructor for class net.imagej.ops.morphology.extractHoles.DefaultExtractHolesFunction
defaultFactory - Static variable in class net.imagej.plugins.commands.binary.AbstractMorphOpsCommand: OutOfBoundsFactory that return False as value for all the pixel that are out of the image space.
DefaultFeretsAngle - Class in net.imagej.ops.geom.geom2d: Generic implementation of geom.feretsAngle.
DefaultFeretsAngle() - Constructor for class net.imagej.ops.geom.geom2d.DefaultFeretsAngle
DefaultFeretsDiameter - Class in net.imagej.ops.geom.geom2d: Generic implementation of geom.feretsDiameter.
DefaultFeretsDiameter() - Constructor for class net.imagej.ops.geom.geom2d.DefaultFeretsDiameter
DefaultFeretsDiameterForAngle - Class in net.imagej.ops.geom.geom2d: Ferets Diameter for a certain angle.
DefaultFeretsDiameterForAngle() - Constructor for class net.imagej.ops.geom.geom2d.DefaultFeretsDiameterForAngle
DefaultFill<T extends Type<T>> - Class in net.imagej.ops.image.fill: Fill an IterableInterval with some constant value.
DefaultFill() - Constructor for class net.imagej.ops.image.fill.DefaultFill
DefaultFillHoles<T extends BooleanType<T>> - Class in net.imagej.ops.morphology.fillHoles: Fills the holes of a BooleanType image.
DefaultFillHoles() - Constructor for class net.imagej.ops.morphology.fillHoles.DefaultFillHoles
DefaultFlatIterableView<T> - Class in net.imagej.ops.transform.flatIterableView: Wraps the Views.flatIterable(RandomAccessibleInterval) method.
DefaultFlatIterableView() - Constructor for class net.imagej.ops.transform.flatIterableView.DefaultFlatIterableView
DefaultFloodFill<T extends Type<T> & Comparable<T>> - Class in net.imagej.ops.morphology.floodFill
DefaultFloodFill() - Constructor for class net.imagej.ops.morphology.floodFill.DefaultFloodFill
DefaultFrangi<T extends RealType<T>,U extends RealType> - Class in net.imagej.ops.filter.vesselness: Input is a 2- or 3-dimensional grayscales image.
DefaultFrangi() - Constructor for class net.imagej.ops.filter.vesselness.DefaultFrangi
DefaultGaussRA<T extends NumericType<T> & NativeType<T>> - Class in net.imagej.ops.filter.gauss: Gaussian filter, wrapping Gauss3 of imglib2-algorithms.
DefaultGaussRA() - Constructor for class net.imagej.ops.filter.gauss.DefaultGaussRA
DefaultGaussRAI<T extends NumericType<T> & NativeType<T>> - Class in net.imagej.ops.filter.gauss: Gaussian filter, wrapping Gauss3 of imglib2-algorithms.
DefaultGaussRAI() - Constructor for class net.imagej.ops.filter.gauss.DefaultGaussRAI
DefaultGeometricMean,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the stats.geometricMean using stats.size and stats.sumOfLogs.
DefaultGeometricMean() - Constructor for class net.imagej.ops.stats.DefaultGeometricMean
DefaultHarmonicMean,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the stats.harmonicMean using stats.size and stats.sumOfInverses.
DefaultHarmonicMean() - Constructor for class net.imagej.ops.stats.DefaultHarmonicMean
DefaultHuMoment1,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.hu: Op to calculate the imageMoments.huMoment1.
DefaultHuMoment1() - Constructor for class net.imagej.ops.imagemoments.hu.DefaultHuMoment1
DefaultHuMoment2,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.hu: Op to calculate the imageMoments.huMoment2.
DefaultHuMoment2() - Constructor for class net.imagej.ops.imagemoments.hu.DefaultHuMoment2
DefaultHuMoment3,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.hu: Op to calculate the imageMoments.huMoment3.
DefaultHuMoment3() - Constructor for class net.imagej.ops.imagemoments.hu.DefaultHuMoment3
DefaultHuMoment4,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.hu: Op to calculate the imageMoments.huMoment4.
DefaultHuMoment4() - Constructor for class net.imagej.ops.imagemoments.hu.DefaultHuMoment4
DefaultHuMoment5,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.hu: Op to calculate the imageMoments.huMoment5.
DefaultHuMoment5() - Constructor for class net.imagej.ops.imagemoments.hu.DefaultHuMoment5
DefaultHuMoment6,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.hu: Op to calculate the imageMoments.huMoment6.
DefaultHuMoment6() - Constructor for class net.imagej.ops.imagemoments.hu.DefaultHuMoment6
DefaultHuMoment7,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.hu: Op to calculate the imageMoments.huMoment7.
DefaultHuMoment7() - Constructor for class net.imagej.ops.imagemoments.hu.DefaultHuMoment7
DefaultHyperSliceView<T> - Class in net.imagej.ops.transform.hyperSliceView: Wraps the Views.hyperSlice(RandomAccessible, int, long) method.
DefaultHyperSliceView() - Constructor for class net.imagej.ops.transform.hyperSliceView.DefaultHyperSliceView
DefaultICM1<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Implementation of Information Measure of Correlation 1 Haralick Feature
DefaultICM1() - Constructor for class net.imagej.ops.features.haralick.DefaultICM1
DefaultICM2<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Implementation of Information Measure of Correlation 2 Haralick Feature
DefaultICM2() - Constructor for class net.imagej.ops.features.haralick.DefaultICM2
DefaultIdentity<A> - Class in net.imagej.ops.identity: Default implementation of the IdentityOp op.
DefaultIdentity() - Constructor for class net.imagej.ops.identity.DefaultIdentity
DefaultIFDM<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Implementation of Inverse Difference Moment Haralick Feature based on http://www.uio.no/studier/emner/matnat/ifi/INF4300/h08/undervisningsmateriale/glcm.pdf .
DefaultIFDM() - Constructor for class net.imagej.ops.features.haralick.DefaultIFDM
DefaultImageCanvas - Class in net.imagej.display: The DefaultImageCanvas maintains a viewport, a zoom scale and a center coordinate that it uses to map viewport pixels to display coordinates.
DefaultImageCanvas(ImageDisplay) - Constructor for class net.imagej.display.DefaultImageCanvas
DefaultImageDisplay - Class in net.imagej.display: Default implementation of ImageDisplay.
DefaultImageDisplay() - Constructor for class net.imagej.display.DefaultImageDisplay
DefaultImageDisplayService - Class in net.imagej.display: Default service for working with ImageDisplays.
DefaultImageDisplayService() - Constructor for class net.imagej.display.DefaultImageDisplayService
DefaultImageJMATLABService - Class in net.imagej.matlab: Default ImageJMATLABService implementation.
DefaultImageJMATLABService() - Constructor for class net.imagej.matlab.DefaultImageJMATLABService
DefaultImageJServerService - Class in net.imagej.server: Default implementation of ImageJServerService.
DefaultImageJServerService() - Constructor for class net.imagej.server.DefaultImageJServerService
DefaultImageJUIService - Class in net.imagej.ui: Default service for managing ImageJ user interfaces.
DefaultImageJUIService() - Constructor for class net.imagej.ui.DefaultImageJUIService
DefaultImagePlusDisplay - Class in net.imagej.legacy.display: Default ImagePlusDisplay implementation.
DefaultImagePlusDisplay() - Constructor for class net.imagej.legacy.display.DefaultImagePlusDisplay
DefaultImgPlusService - Class in net.imagej: This class allows one to obtain a more specifically typed ImgPlus based on the actual backing type of the data.
DefaultImgPlusService() - Constructor for class net.imagej.DefaultImgPlusService
DefaultInertiaTensor3D> - Class in net.imagej.ops.geom.geom3d: This Op computes the 2nd multi variate of a IterableRegion (Label).
DefaultInertiaTensor3D() - Constructor for class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3D
DefaultInertiaTensor3DMesh - Class in net.imagej.ops.geom.geom3d: This Op computes the 2nd multi variate of a IterableRegion (Label).
DefaultInertiaTensor3DMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3DMesh
DefaultIntegralImg> - Class in net.imagej.ops.image.integral: n-dimensional integral image that stores sums using RealType.
DefaultIntegralImg() - Constructor for class net.imagej.ops.image.integral.DefaultIntegralImg
DefaultInterpolateView - Class in net.imagej.ops.transform.interpolateView: Wraps the Views.interpolate(EuclideanSpace, InterpolatorFactory) method.
DefaultInterpolateView() - Constructor for class net.imagej.ops.transform.interpolateView.DefaultInterpolateView
DefaultIntervalView<T> - Class in net.imagej.ops.transform.intervalView: Wraps the Views.interval(RandomAccessible, Interval) method.
DefaultIntervalView() - Constructor for class net.imagej.ops.transform.intervalView.DefaultIntervalView
DefaultInvertAxisView<T> - Class in net.imagej.ops.transform.invertAxisView: Wraps the Views.invertAxis(RandomAccessible, int) method.
DefaultInvertAxisView() - Constructor for class net.imagej.ops.transform.invertAxisView.DefaultInvertAxisView
DefaultJHotDrawAdapter - Class in net.imagej.ui.swing.overlay: The default adapter handles any kind of overlay.
DefaultJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter
DefaultJoin2Computers<A,B,C> - Class in net.imagej.ops.join: Joins two UnaryComputerOps.
DefaultJoin2Computers() - Constructor for class net.imagej.ops.join.DefaultJoin2Computers
DefaultJoin2Inplaces<A> - Class in net.imagej.ops.join: Joins two UnaryInplaceOps.
DefaultJoin2Inplaces() - Constructor for class net.imagej.ops.join.DefaultJoin2Inplaces
DefaultJoinComputerAndInplace<A,B> - Class in net.imagej.ops.join: Joins a UnaryComputerOp with an UnaryInplaceOp.
DefaultJoinComputerAndInplace() - Constructor for class net.imagej.ops.join.DefaultJoinComputerAndInplace
DefaultJoinInplaceAndComputer<A,B> - Class in net.imagej.ops.join: Joins an UnaryInplaceOp with a UnaryComputerOp.
DefaultJoinInplaceAndComputer() - Constructor for class net.imagej.ops.join.DefaultJoinInplaceAndComputer
DefaultJoinNComputers<A> - Class in net.imagej.ops.join: Joins a list of UnaryComputerOps.
DefaultJoinNComputers() - Constructor for class net.imagej.ops.join.DefaultJoinNComputers
DefaultJoinNInplaces<A> - Class in net.imagej.ops.join: Joins a list of UnaryInplaceOps.
DefaultJoinNInplaces() - Constructor for class net.imagej.ops.join.DefaultJoinNInplaces
DefaultJsonService - Class in net.imagej.server.services: Service that handle customized JSON serialization and deserialization.
DefaultJsonService(ObjectService) - Constructor for class net.imagej.server.services.DefaultJsonService: Constructs and initializes a JsonService with an ObjectService.
DefaultKurtosis,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the stats.kurtosis using stats.stdDev and stats.moment4AboutMean.
DefaultKurtosis() - Constructor for class net.imagej.ops.stats.DefaultKurtosis
DefaultLBP2D> - Class in net.imagej.ops.features.lbp2d: Default implementation of 2d local binary patterns
DefaultLBP2D() - Constructor for class net.imagej.ops.features.lbp2d.DefaultLBP2D
DefaultLegacyEditor - Class in net.imagej.legacy.plugin: The default LegacyEditor plugin.
DefaultLegacyEditor() - Constructor for class net.imagej.legacy.plugin.DefaultLegacyEditor
DefaultLegacyHooks - Class in net.imagej.legacy: The LegacyHooks encapsulating an active LegacyService for use within the patched ImageJ 1.x.
DefaultLegacyHooks(LegacyService) - Constructor for class net.imagej.legacy.DefaultLegacyHooks
DefaultLegacyHooks(LegacyService, IJ1Helper) - Constructor for class net.imagej.legacy.DefaultLegacyHooks
DefaultLegacyOpener - Class in net.imagej.legacy.plugin: The default LegacyOpener plugin.
DefaultLegacyOpener() - Constructor for class net.imagej.legacy.plugin.DefaultLegacyOpener
DefaultLinearAxis - Class in net.imagej.axis: Default implementation of LinearAxis.
DefaultLinearAxis() - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a default LinearAxis.
DefaultLinearAxis(double) - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a LinearAxis of specified scale.
DefaultLinearAxis(double, double) - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a LinearAxis of specified scale and origin.
DefaultLinearAxis(AxisType) - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a LinearAxis of specified type.
DefaultLinearAxis(AxisType, double) - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a LinearAxis of specified type and scale.
DefaultLinearAxis(AxisType, double, double) - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a LinearAxis of specified type, scale, and origin.
DefaultLinearAxis(AxisType, String) - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a LinearAxis of specified type and unit.
DefaultLinearAxis(AxisType, String, double) - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a LinearAxis of specified type, unit, and scale.
DefaultLinearAxis(AxisType, String, double, double) - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a LinearAxis of specified type, unit, scale, and origin.
DefaultLinearSpace - Class in net.imagej.space: Default implementation of LinearSpace.
DefaultLinearSpace(int) - Constructor for class net.imagej.space.DefaultLinearSpace
DefaultLinearSpace(LinearAxis...) - Constructor for class net.imagej.space.DefaultLinearSpace
DefaultLinearSpace(List<LinearAxis>) - Constructor for class net.imagej.space.DefaultLinearSpace
DefaultLoopComputer - Class in net.imagej.ops.loop: Applies a UnaryComputerOp multiple times to an image.
DefaultLoopComputer() - Constructor for class net.imagej.ops.loop.DefaultLoopComputer
DefaultLoopInplace<A> - Class in net.imagej.ops.loop: Default implementation of a LoopInplace.
DefaultLoopInplace() - Constructor for class net.imagej.ops.loop.DefaultLoopInplace
DefaultLUTService - Class in net.imagej.lut: The DefaultLUTService loads ColorTables from files (hosted locally or externally).
DefaultLUTService() - Constructor for class net.imagej.lut.DefaultLUTService
DefaultMagnitudeFeature<T extends RealType<T>,O extends RealType<O>> - Class in net.imagej.ops.features.zernike: Get Magnitude of Zernike moment as feature
DefaultMagnitudeFeature() - Constructor for class net.imagej.ops.features.zernike.DefaultMagnitudeFeature
DefaultMainElongation - Class in net.imagej.ops.geom.geom3d: Generic implementation of Ops.Geometric.MainElongation Adapted to 3D from http://www.math.uci.edu/icamp/summer/research_11/park/ shape_descriptors_survey.pdf
DefaultMainElongation() - Constructor for class net.imagej.ops.geom.geom3d.DefaultMainElongation
DefaultMajorAxis - Class in net.imagej.ops.geom.geom2d: Generic implementation of geom.majorAxis.
DefaultMajorAxis() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMajorAxis
DefaultMapNeighborhood<I,O> - Class in net.imagej.ops.map.neighborhood: Evaluates a UnaryComputerOp for each Neighborhood on the input RandomAccessibleInterval.
DefaultMapNeighborhood() - Constructor for class net.imagej.ops.map.neighborhood.DefaultMapNeighborhood
DefaultMarchingCubes<T extends BooleanType<T>> - Class in net.imagej.ops.geom.geom3d: This is a marching cubes implementation.
DefaultMarchingCubes() - Constructor for class net.imagej.ops.geom.geom3d.DefaultMarchingCubes
DefaultMaxFilter<T,V> - Class in net.imagej.ops.filter.max: Default implementation of MaxFilterOp.
DefaultMaxFilter() - Constructor for class net.imagej.ops.filter.max.DefaultMaxFilter
DefaultMaximumFeret - Class in net.imagej.ops.geom.geom2d: Maximum Feret of a polygon.
DefaultMaximumFeret() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMaximumFeret
DefaultMaximumFeretAngle - Class in net.imagej.ops.geom.geom2d
DefaultMaximumFeretAngle() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMaximumFeretAngle
DefaultMaximumFeretDiameter - Class in net.imagej.ops.geom.geom2d
DefaultMaximumFeretDiameter() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMaximumFeretDiameter
DefaultMaxProbability<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Implementation of Maximum Probability Haralick Feature
DefaultMaxProbability() - Constructor for class net.imagej.ops.features.haralick.DefaultMaxProbability
DefaultMean,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the stats.max using stats.sum and stats.size.
DefaultMean() - Constructor for class net.imagej.ops.stats.DefaultMean
DefaultMeanFilter<T,V> - Class in net.imagej.ops.filter.mean: Default implementation of MeanFilterOp.
DefaultMeanFilter() - Constructor for class net.imagej.ops.filter.mean.DefaultMeanFilter
DefaultMedian,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the stats.median.
DefaultMedian() - Constructor for class net.imagej.ops.stats.DefaultMedian
DefaultMedianElongation - Class in net.imagej.ops.geom.geom3d: Generic implementation of Ops.Geometric.MedianElongation.
DefaultMedianElongation() - Constructor for class net.imagej.ops.geom.geom3d.DefaultMedianElongation
DefaultMedianFilter<T,V> - Class in net.imagej.ops.filter.median: Default implementation of MedianFilterOp.
DefaultMedianFilter() - Constructor for class net.imagej.ops.filter.median.DefaultMedianFilter
DefaultMinFilter<T,V> - Class in net.imagej.ops.filter.min: Default implementation of MinFilterOp.
DefaultMinFilter() - Constructor for class net.imagej.ops.filter.min.DefaultMinFilter
DefaultMinimumFeret - Class in net.imagej.ops.geom.geom2d: Minimum Feret of a polygon.
DefaultMinimumFeret() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMinimumFeret
DefaultMinimumFeretAngle - Class in net.imagej.ops.geom.geom2d
DefaultMinimumFeretAngle() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMinimumFeretAngle
DefaultMinimumFeretDiameter - Class in net.imagej.ops.geom.geom2d
DefaultMinimumFeretDiameter() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMinimumFeretDiameter
DefaultMinMax> - Class in net.imagej.ops.stats: Op to calculate the stats.minMax.
DefaultMinMax() - Constructor for class net.imagej.ops.stats.DefaultMinMax
DefaultMinMaxMethod<T extends Type<T> & Comparable<T>> - Class in net.imagej.minmax: A MinMaxMethod implementation that forks net.imglib2.algorithm.stats.ComputeMinMax.
DefaultMinMaxMethod() - Constructor for class net.imagej.minmax.DefaultMinMaxMethod
DefaultMinorAxis - Class in net.imagej.ops.geom.geom2d: Generic implementation of geom.minorAxis.
DefaultMinorAxis() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMinorAxis
DefaultMinorMajorAxis - Class in net.imagej.ops.geom.geom2d: Generic implementation of geom.secondMultiVariate.
DefaultMinorMajorAxis() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMinorMajorAxis
DefaultMoment00,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.moments: Op to calculate the imageMoments.moment00.
DefaultMoment00() - Constructor for class net.imagej.ops.imagemoments.moments.DefaultMoment00
DefaultMoment01,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.moments: Op to calculate the imageMoments.moment01.
DefaultMoment01() - Constructor for class net.imagej.ops.imagemoments.moments.DefaultMoment01
DefaultMoment10,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.moments: Op to calculate the imageMoments.moment10.
DefaultMoment10() - Constructor for class net.imagej.ops.imagemoments.moments.DefaultMoment10
DefaultMoment11,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.moments: Op to calculate the imageMoments.moment11.
DefaultMoment11() - Constructor for class net.imagej.ops.imagemoments.moments.DefaultMoment11
DefaultMoment1AboutMean,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the stats.moment1AboutMean using stats.mean and stats.size.
DefaultMoment1AboutMean() - Constructor for class net.imagej.ops.stats.DefaultMoment1AboutMean
DefaultMoment2AboutMean,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the stats.moment2AboutMean using stats.mean and stats.size.
DefaultMoment2AboutMean() - Constructor for class net.imagej.ops.stats.DefaultMoment2AboutMean
DefaultMoment3AboutMean,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the stats.moment3AboutMean using stats.mean and stats.size.
DefaultMoment3AboutMean() - Constructor for class net.imagej.ops.stats.DefaultMoment3AboutMean
DefaultMoment4AboutMean,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the stats.moment4AboutMean using stats.mean and stats.size.
DefaultMoment4AboutMean() - Constructor for class net.imagej.ops.stats.DefaultMoment4AboutMean
DefaultNamespaceService - Class in net.imagej.ops: Interface for services that manage Ops Namespaces.
DefaultNamespaceService() - Constructor for class net.imagej.ops.DefaultNamespaceService
DefaultNormalizedCentralMoment02,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.normalizedcentralmoments: Op to calculate the imageMoments.normalizedCentralMoment02.
DefaultNormalizedCentralMoment02() - Constructor for class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment02
DefaultNormalizedCentralMoment03,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.normalizedcentralmoments: Op to calculate the imageMoments.normalizedCentralMoment03.
DefaultNormalizedCentralMoment03() - Constructor for class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment03
DefaultNormalizedCentralMoment11,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.normalizedcentralmoments: Op to calculate the imageMoments.normalizedCentralMoment11.
DefaultNormalizedCentralMoment11() - Constructor for class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment11
DefaultNormalizedCentralMoment12,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.normalizedcentralmoments: Op to calculate the imageMoments.normalizedCentralMoment12.
DefaultNormalizedCentralMoment12() - Constructor for class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment12
DefaultNormalizedCentralMoment20,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.normalizedcentralmoments: Op to calculate the imageMoments.normalizedCentralMoment20.
DefaultNormalizedCentralMoment20() - Constructor for class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment20
DefaultNormalizedCentralMoment21,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.normalizedcentralmoments: Op to calculate the imageMoments.normalizedCentralMoment21.
DefaultNormalizedCentralMoment21() - Constructor for class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment21
DefaultNormalizedCentralMoment30,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.normalizedcentralmoments: Op to calculate the imageMoments.normalizedCentralMoment30.
DefaultNormalizedCentralMoment30() - Constructor for class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment30
DefaultNotebookService - Class in net.imagej.notebook: AWT-driven implementation of NotebookService.
DefaultNotebookService() - Constructor for class net.imagej.notebook.DefaultNotebookService
DefaultObjectInfo - Class in net.imagej.server.services: Default implementation of ObjectInfo.
DefaultObjectInfo(Object, String) - Constructor for class net.imagej.server.services.DefaultObjectInfo
DefaultObjectService - Class in net.imagej.server.services: Service that handles concurrent Object registration and retrieval using IDs.
DefaultObjectService() - Constructor for class net.imagej.server.services.DefaultObjectService
DefaultOffsetView<T> - Class in net.imagej.ops.transform.offsetView: Wraps the Views.offset(RandomAccessible, long[]) method.
DefaultOffsetView() - Constructor for class net.imagej.ops.transform.offsetView.DefaultOffsetView
DefaultOMEROLine - Class in net.imagej.omero.roi.line: Default implementation of OMEROLine.
DefaultOMEROLine(LineData) - Constructor for class net.imagej.omero.roi.line.DefaultOMEROLine
DefaultOMEROMask - Class in net.imagej.omero.roi.mask: Default implementation for OMEROMask.
DefaultOMEROMask(MaskData) - Constructor for class net.imagej.omero.roi.mask.DefaultOMEROMask
DefaultOMEROPoint - Class in net.imagej.omero.roi.point: Default implementation of OMEROPoint.
DefaultOMEROPoint(PointData) - Constructor for class net.imagej.omero.roi.point.DefaultOMEROPoint
DefaultOMEROPolygon - Class in net.imagej.omero.roi.polyshape: Default implementation of OMEROPolygon.
DefaultOMEROPolygon(PolygonData) - Constructor for class net.imagej.omero.roi.polyshape.DefaultOMEROPolygon
DefaultOMEROPolyline - Class in net.imagej.omero.roi.polyshape: Default implementation of OMEROPolyline.
DefaultOMEROPolyline(PolylineData) - Constructor for class net.imagej.omero.roi.polyshape.DefaultOMEROPolyline
DefaultOMEROROICollection - Class in net.imagej.omero.roi: Default implementation of OMEROROICollection.
DefaultOMEROROICollection(TreeNode<?>, ROIData, ConvertService) - Constructor for class net.imagej.omero.roi.DefaultOMEROROICollection
DefaultOMEROROICollection(ROIData, ConvertService) - Constructor for class net.imagej.omero.roi.DefaultOMEROROICollection
DefaultOMEROROIElement - Class in net.imagej.omero.roi: Default implementation of OMEROROIElement.
DefaultOMEROROIElement(OMERORealMask<?>, TreeNode<?>, List<TreeNode<?>>) - Constructor for class net.imagej.omero.roi.DefaultOMEROROIElement
DefaultOMEROROIProjector - Class in net.imagej.omero.roi.project: Default implementation of OMEROROIProjector.
DefaultOMEROROIProjector() - Constructor for class net.imagej.omero.roi.project.DefaultOMEROROIProjector
DefaultOMEROService - Class in net.imagej.omero: Default ImageJ service for managing OMERO data conversion.
DefaultOMEROService() - Constructor for class net.imagej.omero.DefaultOMEROService
DefaultOMEROSession - Class in net.imagej.omero: Helper class for managing OMERO client sessions.
DefaultOMEROSession(OMEROLocation, OMEROService) - Constructor for class net.imagej.omero.DefaultOMEROSession
DefaultOMEROSession(OMEROLocation, client, OMEROService) - Constructor for class net.imagej.omero.DefaultOMEROSession
DefaultOpMatchingService - Class in net.imagej.ops: Default service for finding Ops which match a request.
DefaultOpMatchingService() - Constructor for class net.imagej.ops.DefaultOpMatchingService
DefaultOpService - Class in net.imagej.ops: Default service for managing and executing Ops.
DefaultOpService() - Constructor for class net.imagej.ops.DefaultOpService
DefaultOverlayService - Class in net.imagej.display: Default service for working with Overlays.
DefaultOverlayService() - Constructor for class net.imagej.display.DefaultOverlayService
DefaultOverlayView - Class in net.imagej.display: A view into an Overlay, for use with a ImageDisplay.
DefaultOverlayView() - Constructor for class net.imagej.display.DefaultOverlayView
DefaultPadInputFFT<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.filter.pad: Op used to pad the image using the default FFT padding scheme.
DefaultPadInputFFT() - Constructor for class net.imagej.ops.filter.pad.DefaultPadInputFFT
DefaultPadShiftKernelFFT<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.filter.pad: Op used to pad the kernel using the default FFT padding scheme and shift the center of the kernel to the origin
DefaultPadShiftKernelFFT() - Constructor for class net.imagej.ops.filter.pad.DefaultPadShiftKernelFFT
DefaultPearsons<T extends RealType<T>,U extends RealType> - Class in net.imagej.ops.coloc.pearsons: A class that represents the mean calculation of the two source images in the data container.
DefaultPearsons() - Constructor for class net.imagej.ops.coloc.pearsons.DefaultPearsons
DefaultPercentile,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the n-th stats.percentile.
DefaultPercentile() - Constructor for class net.imagej.ops.stats.DefaultPercentile
DefaultPerimeterLength - Class in net.imagej.ops.geom.geom2d: Generic implementation of geom.boundarySize.
DefaultPerimeterLength() - Constructor for class net.imagej.ops.geom.geom2d.DefaultPerimeterLength
DefaultPermuteCoordinatesInverseView<T> - Class in net.imagej.ops.transform.permuteCoordinatesInverseView: Wraps the Views.permuteCoordinatesInverse(RandomAccessibleInterval, int[]) method.
DefaultPermuteCoordinatesInverseView() - Constructor for class net.imagej.ops.transform.permuteCoordinatesInverseView.DefaultPermuteCoordinatesInverseView
DefaultPermuteCoordinatesView<T> - Class in net.imagej.ops.transform.permuteCoordinatesView: Wraps the Views.permuteCoordinates(RandomAccessibleInterval, int[]) method.
DefaultPermuteCoordinatesView() - Constructor for class net.imagej.ops.transform.permuteCoordinatesView.DefaultPermuteCoordinatesView
DefaultPermuteView<T> - Class in net.imagej.ops.transform.permuteView: Wraps the Views.permute(RandomAccessible, int, int) method.
DefaultPermuteView() - Constructor for class net.imagej.ops.transform.permuteView.DefaultPermuteView
DefaultPhaseFeature<T extends RealType<T>,O extends RealType<O>> - Class in net.imagej.ops.features.zernike: Get Phase of Zernike moment as feature
DefaultPhaseFeature() - Constructor for class net.imagej.ops.features.zernike.DefaultPhaseFeature
DefaultProjectParallel<T,V> - Class in net.imagej.ops.transform.project
DefaultProjectParallel() - Constructor for class net.imagej.ops.transform.project.DefaultProjectParallel
DefaultPValue<T extends RealType<T>,U extends RealType> - Class in net.imagej.ops.coloc.pValue: This algorithm repeatedly executes a colocalization algorithm, computing a p-value.
DefaultPValue() - Constructor for class net.imagej.ops.coloc.pValue.DefaultPValue
DefaultQuantile,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the n-th stats.percentile.
DefaultQuantile() - Constructor for class net.imagej.ops.stats.DefaultQuantile
DefaultRasterView<T> - Class in net.imagej.ops.transform.rasterView: Wraps the Views.raster(RealRandomAccessible) method.
DefaultRasterView() - Constructor for class net.imagej.ops.transform.rasterView.DefaultRasterView
DefaultResultsTable - Class in net.imagej.table: Default implementation of ResultsTable.
DefaultResultsTable() - Constructor for class net.imagej.table.DefaultResultsTable: Creates an empty results table.
DefaultResultsTable(int, int) - Constructor for class net.imagej.table.DefaultResultsTable: Creates a results table with the given row and column dimensions.
DefaultROIService - Class in net.imagej.roi: Default implementation of ROIService.
DefaultROIService() - Constructor for class net.imagej.roi.DefaultROIService
DefaultROITree - Class in net.imagej.roi: Default implementation of ROITree.
DefaultROITree() - Constructor for class net.imagej.roi.DefaultROITree: Creates an empty tree of ROIs.
DefaultRoiWrapper<R extends Roi> - Class in net.imagej.legacy.convert.roi: Wraps any Roi as a MaskInterval.
DefaultRoiWrapper(R) - Constructor for class net.imagej.legacy.convert.roi.DefaultRoiWrapper: Creates a MaskInterval which wraps the given Roi.
DefaultRoiWrapperToMaskData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.DefaultRoiWrapperToMaskData
DefaultRotateView<T> - Class in net.imagej.ops.transform.rotateView: Wraps the Views.rotate(RandomAccessible, int, int) method.
DefaultRotateView() - Constructor for class net.imagej.ops.transform.rotateView.DefaultRotateView
DefaultRoundness - Class in net.imagej.ops.geom.geom2d: Generic implementation of geom.roundness.
DefaultRoundness() - Constructor for class net.imagej.ops.geom.geom2d.DefaultRoundness
DefaultSamplerService - Class in net.imagej.sampler: Default implementation of SamplerService.
DefaultSamplerService() - Constructor for class net.imagej.sampler.DefaultSamplerService
DefaultScaleView<T> - Class in net.imagej.ops.transform.scaleView: Scales a RandomAccessibleInterval in each dimension with the provided scale factors.
DefaultScaleView() - Constructor for class net.imagej.ops.transform.scaleView.DefaultScaleView
DefaultShearView<T> - Class in net.imagej.ops.transform.shearView: Wraps the Views.shear(RandomAccessible, int, int) method.
DefaultShearView() - Constructor for class net.imagej.ops.transform.shearView.DefaultShearView
DefaultSigmaFilter<T extends RealType<T>,V extends RealType<V>> - Class in net.imagej.ops.filter.sigma: Default implementation of SigmaFilterOp.
DefaultSigmaFilter() - Constructor for class net.imagej.ops.filter.sigma.DefaultSigmaFilter
DefaultSize,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the stats.size.
DefaultSize() - Constructor for class net.imagej.ops.stats.DefaultSize
DefaultSizeConvexHullPolygon - Class in net.imagej.ops.geom.geom2d
DefaultSizeConvexHullPolygon() - Constructor for class net.imagej.ops.geom.geom2d.DefaultSizeConvexHullPolygon
DefaultSizePolygon - Class in net.imagej.ops.geom.geom2d: Specific implementation of Area for a Polygon2D.
DefaultSizePolygon() - Constructor for class net.imagej.ops.geom.geom2d.DefaultSizePolygon
DefaultSkewness,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the stats.skewness using stats.moment3AboutMean and stats.stdDev.
DefaultSkewness() - Constructor for class net.imagej.ops.stats.DefaultSkewness
DefaultSmallestEnclosingRectangle - Class in net.imagej.ops.geom.geom2d: Generic implementation of geom.smallestBoundingBox.
DefaultSmallestEnclosingRectangle() - Constructor for class net.imagej.ops.geom.geom2d.DefaultSmallestEnclosingRectangle
DefaultSmallestOrientedBoundingBox - Class in net.imagej.ops.geom.geom3d.mesh: Generic implementation of geom.smallestBoundingBox.
DefaultSmallestOrientedBoundingBox() - Constructor for class net.imagej.ops.geom.geom3d.mesh.DefaultSmallestOrientedBoundingBox
DefaultSolidityMesh - Class in net.imagej.ops.geom.geom3d
DefaultSolidityMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultSolidityMesh
DefaultSolidityPolygon - Class in net.imagej.ops.geom.geom2d
DefaultSolidityPolygon() - Constructor for class net.imagej.ops.geom.geom2d.DefaultSolidityPolygon
DefaultSparenessMesh - Class in net.imagej.ops.geom.geom3d: Generic implementation of Ops.Geometric.Spareness.
DefaultSparenessMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultSparenessMesh
DefaultSphericity - Class in net.imagej.ops.geom.geom3d: Generic implementation of Ops.Geometric.Sphericity.
DefaultSphericity() - Constructor for class net.imagej.ops.geom.geom3d.DefaultSphericity
DefaultStackView<T> - Class in net.imagej.ops.transform.stackView: Wraps the Views.stack(List) method.
DefaultStackView() - Constructor for class net.imagej.ops.transform.stackView.DefaultStackView
DefaultStandardDeviation,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the stats.stdDev using stats.variance.
DefaultStandardDeviation() - Constructor for class net.imagej.ops.stats.DefaultStandardDeviation
DefaultSubsampleView<T> - Class in net.imagej.ops.transform.subsampleView: Wraps the Views.subsample(RandomAccessible, long) method.
DefaultSubsampleView() - Constructor for class net.imagej.ops.transform.subsampleView.DefaultSubsampleView
DefaultSum,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the stats.sum.
DefaultSum() - Constructor for class net.imagej.ops.stats.DefaultSum
DefaultSumAverage<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Implementation of Sum Average Haralick Feature
DefaultSumAverage() - Constructor for class net.imagej.ops.features.haralick.DefaultSumAverage
DefaultSumEntropy<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Implementation of Sum Entropy Haralick Feature
DefaultSumEntropy() - Constructor for class net.imagej.ops.features.haralick.DefaultSumEntropy
DefaultSumOfInverses,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the stats.sumOfInverses.
DefaultSumOfInverses() - Constructor for class net.imagej.ops.stats.DefaultSumOfInverses
DefaultSumOfLogs,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the stats.sumOfLogs.
DefaultSumOfLogs() - Constructor for class net.imagej.ops.stats.DefaultSumOfLogs
DefaultSumOfSquares,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the stats.sumOfSquares.
DefaultSumOfSquares() - Constructor for class net.imagej.ops.stats.DefaultSumOfSquares
DefaultSumVariance<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Implementation of Sum Variance Haralick Feature according to http://murphylab.web.cmu.edu/publications/boland/boland_node26.html .
DefaultSumVariance() - Constructor for class net.imagej.ops.features.haralick.DefaultSumVariance
DefaultSurfaceArea - Class in net.imagej.ops.geom.geom3d: Generic implementation of Ops.Geometric.BoundarySize.
DefaultSurfaceArea() - Constructor for class net.imagej.ops.geom.geom3d.DefaultSurfaceArea
DefaultSurfaceAreaConvexHullMesh - Class in net.imagej.ops.geom.geom3d
DefaultSurfaceAreaConvexHullMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultSurfaceAreaConvexHullMesh
DefaultTableIOPlugin - Class in net.imagej.server.external: Plugin for reading/writing GenericTables.
DefaultTableIOPlugin() - Constructor for class net.imagej.server.external.DefaultTableIOPlugin
DefaultTableService - Class in net.imagej.table
DefaultTableService() - Constructor for class net.imagej.table.DefaultTableService
DefaultTensorFlowService - Class in net.imagej.tensorflow: Default implementation of TensorFlowService.
DefaultTensorFlowService() - Constructor for class net.imagej.tensorflow.DefaultTensorFlowService
DefaultTextureHomogeneity<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Implementation of Texture Homogeneity Haralick Feature
DefaultTextureHomogeneity() - Constructor for class net.imagej.ops.features.haralick.DefaultTextureHomogeneity
DefaultTranslateView<T> - Class in net.imagej.ops.transform.translateView: Wraps the Views.translate(RandomAccessible, long[]) method.
DefaultTranslateView() - Constructor for class net.imagej.ops.transform.translateView.DefaultTranslateView
DefaultTubeness<T extends RealType<T>> - Class in net.imagej.ops.filter.tubeness: The Tubeness filter: enhance filamentous structures of a specified thickness.
DefaultTubeness() - Constructor for class net.imagej.ops.filter.tubeness.DefaultTubeness
DefaultTypedAxis - Class in net.imagej.axis: Default implementation of TypedAxis.
DefaultTypedAxis() - Constructor for class net.imagej.axis.DefaultTypedAxis
DefaultTypedAxis(AxisType) - Constructor for class net.imagej.axis.DefaultTypedAxis
DefaultTypedSpace - Class in net.imagej.space: Default implementation of TypedSpace.
DefaultTypedSpace(int) - Constructor for class net.imagej.space.DefaultTypedSpace
DefaultTypedSpace(TypedAxis...) - Constructor for class net.imagej.space.DefaultTypedSpace
DefaultTypedSpace(List<TypedAxis>) - Constructor for class net.imagej.space.DefaultTypedSpace
DefaultUnitService - Class in net.imagej.units: Service for defining units and making unit conversions.
DefaultUnitService() - Constructor for class net.imagej.units.DefaultUnitService
DefaultUnshearView<T> - Class in net.imagej.ops.transform.unshearView: Wraps the Views.unshear(RandomAccessible, int, int) method.
DefaultUnshearView() - Constructor for class net.imagej.ops.transform.unshearView.DefaultUnshearView
DefaultUpdateService - Class in net.imagej.updater: Default service for managing ImageJ updates.
DefaultUpdateService() - Constructor for class net.imagej.updater.DefaultUpdateService
DefaultUploaderService - Class in net.imagej.updater: Default service for managing available ImageJ upload mechanisms.
DefaultUploaderService() - Constructor for class net.imagej.updater.DefaultUploaderService
DefaultVariance<T extends RealType<T>> - Class in net.imagej.ops.features.haralick: Implementation of Variance Haralick Feature based on http://murphylab.web.cmu.edu/publications/boland/boland_node26.html
DefaultVariance() - Constructor for class net.imagej.ops.features.haralick.DefaultVariance
DefaultVariance,O extends RealType<O>> - Class in net.imagej.ops.stats: Op to calculate the stats.variance using the stats.stdDev using the two-pass algorithm.
DefaultVariance() - Constructor for class net.imagej.ops.stats.DefaultVariance
DefaultVarianceFilter<T,V> - Class in net.imagej.ops.filter.variance: Default implementation of VarianceFilterOp.
DefaultVarianceFilter() - Constructor for class net.imagej.ops.filter.variance.DefaultVarianceFilter
DefaultVertexInterpolator - Class in net.imagej.ops.geom.geom3d.mesh: Linearly interpolate the position where an isosurface cuts an edge between two vertices, each with their own scalar value
DefaultVertexInterpolator() - Constructor for class net.imagej.ops.geom.geom3d.mesh.DefaultVertexInterpolator
DefaultVerticesCountConvexHullMesh - Class in net.imagej.ops.geom.geom3d
DefaultVerticesCountConvexHullMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultVerticesCountConvexHullMesh
DefaultVerticesCountConvexHullPolygon - Class in net.imagej.ops.geom.geom2d
DefaultVerticesCountConvexHullPolygon() - Constructor for class net.imagej.ops.geom.geom2d.DefaultVerticesCountConvexHullPolygon
DefaultVerticesCountMesh - Class in net.imagej.ops.geom.geom3d: Generic implementation of geom.boundaryPixelCount.
DefaultVerticesCountMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultVerticesCountMesh
DefaultVerticesCountPolygon - Class in net.imagej.ops.geom.geom2d
DefaultVerticesCountPolygon() - Constructor for class net.imagej.ops.geom.geom2d.DefaultVerticesCountPolygon
DefaultVolumeConvexHullMesh - Class in net.imagej.ops.geom.geom3d
DefaultVolumeConvexHullMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultVolumeConvexHullMesh
DefaultVolumeMesh - Class in net.imagej.ops.geom.geom3d: Generic implementation of Ops.Geometric.Size.
DefaultVolumeMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultVolumeMesh
DefaultVoxelization3D - Class in net.imagej.ops.geom.geom3d: This is a voxelizer that produces a binary image with values filled in along the surface of the mesh.
DefaultVoxelization3D() - Constructor for class net.imagej.ops.geom.geom3d.DefaultVoxelization3D
DefaultWindowService - Class in net.imagej.display: Default service for keeping track of open windows, including management of the Windows menu.
DefaultWindowService() - Constructor for class net.imagej.display.DefaultWindowService
DefaultXYEquation<T extends RealType<T>> - Class in net.imagej.ops.image.equation: An equation operation which computes image values from x and y coordinates using a binary lambda.
DefaultXYEquation() - Constructor for class net.imagej.ops.image.equation.DefaultXYEquation
DefaultZeroMinView<T> - Class in net.imagej.ops.transform.zeroMinView: Wraps the Views.zeroMin(RandomAccessibleInterval) method.
DefaultZeroMinView() - Constructor for class net.imagej.ops.transform.zeroMinView.DefaultZeroMinView
DefaultZoomService - Class in net.imagej.display: Default service for performing zoom operations on ImageDisplays.
DefaultZoomService() - Constructor for class net.imagej.display.DefaultZoomService
defineUnit(String, String, double) - Method in class net.imagej.units.DefaultUnitService
defineUnit(String, String, double, double) - Method in class net.imagej.units.DefaultUnitService
defineUnit(String, String, Calibrator) - Method in class net.imagej.units.DefaultUnitService
defineUnit(String, String, double) - Method in interface net.imagej.units.UnitService: Defines a unit conversion that can be referred to via the value() method.
defineUnit(String, String, double, double) - Method in interface net.imagej.units.UnitService: Defines a unit conversion that can be referred to via the value() method.
defineUnit(String, String, Calibrator) - Method in interface net.imagej.units.UnitService: Defines a unit conversion that can be referred to via the value() method.
degree() - Method in class net.imagej.axis.PolynomialAxis: Gets the degree of the polynomial (i.e., the largest exponent with a non-zero coefficient).
DELAY_IN_MICROSECONDS - Static variable in class net.imagej.util.MirrorWebsite
DelayedPositionEvent - Class in net.imagej.display.event: An event indicating that a display's dimensional position has changed.
DelayedPositionEvent(ImageDisplay) - Constructor for class net.imagej.display.event.DelayedPositionEvent
DelayedPositionEvent(ImageDisplay, AxisType) - Constructor for class net.imagej.display.event.DelayedPositionEvent
DelegatingBinaryOp<I1,I2,O,DI1,DI2,DO,OP extends BinaryOp<DI1,DI2,DO>> - Interface in net.imagej.ops.special.chain: Base interface for BinaryOps that delegate to other BinaryOps.
DelegatingUnaryOp<I,O,DI,DO,OP extends UnaryOp<DI,DO>> - Interface in net.imagej.ops.special.chain: Base interface for UnaryOps that delegate to other UnaryOps.
delete() - Method in class net.imagej.AbstractData: Informs interested parties that the data object is no longer relevant and should be deleted.
delete() - Method in class net.imagej.DefaultDataset
delete() - Method in class net.imagej.overlay.AbstractOverlay
delete(int) - Method in class net.imagej.ui.swing.updater.SitesDialog
delete(FileObject) - Method in class net.imagej.updater.CommandLine
deleteAll() - Method in class net.imagej.display.OverlayInfoList
DeleteAxis - Class in net.imagej.plugins.commands.restructure: Deletes an axis from an input Dataset.
DeleteAxis() - Constructor for class net.imagej.plugins.commands.restructure.DeleteAxis
deleteColumn(String) - Method in class net.imagej.legacy.convert.TableWrapper
DeleteData - Class in net.imagej.plugins.commands.restructure: Deletes hyperplanes of data from an input Dataset along a user specified axis.
DeleteData() - Constructor for class net.imagej.plugins.commands.restructure.DeleteData
deleteFile(String, File) - Method in class net.imagej.updater.Conflicts
deleteImagePlus(ImagePlus) - Static method in class net.imagej.legacy.translate.LegacyUtils: Modifies legacy ImageJ data structures so that there are no dangling references to an obsolete ImagePlus.
deleteOrThrowException(File) - Static method in class net.imagej.updater.Installer
deleteOverlay(Overlay) - Method in class net.imagej.display.OverlayInfoList
deleteOverlayInfo(int) - Method in class net.imagej.display.OverlayInfoList
deleteOverlayInfo(OverlayInfo) - Method in class net.imagej.display.OverlayInfoList
deleteRow(int) - Method in class net.imagej.legacy.convert.TableWrapper
DeleteThreshold - Class in net.imagej.plugins.commands.display.interactive: DeleteThreshold is a Command that allows one to remove an existing threshold overlay from an ImageDisplay.
DeleteThreshold() - Constructor for class net.imagej.plugins.commands.display.interactive.DeleteThreshold
deleteThreshold() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
dependencies - Variable in class net.imagej.updater.FileObject
Dependency - Class in net.imagej.updater: A simple data structure for storing information about a dependency.
Dependency(String, long, boolean) - Constructor for class net.imagej.updater.Dependency
DependencyAnalyzer - Class in net.imagej.updater.util: This class generates a list of dependencies for a given file.
DependencyAnalyzer(File) - Constructor for class net.imagej.updater.util.DependencyAnalyzer
DependencyMap() - Constructor for class net.imagej.updater.FilesCollection.DependencyMap
dependencyNotUploaded(FileObject, String) - Method in class net.imagej.updater.Conflicts
dependencyRemoved(FileObject, String) - Method in class net.imagej.updater.Conflicts
dependencyResolution(String, FileObject, String, String) - Method in class net.imagej.updater.Conflicts
derivativeGauss(RandomAccessibleInterval<T>, RandomAccessibleInterval<DoubleType>, int[], double...) - Method in class net.imagej.ops.filter.FilterNamespace
description() - Method in interface net.imagej.types.DataType: A fuller description that elaborates on the capabilities of the type.
description() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
description() - Method in class net.imagej.types.DataType12BitUnsignedInteger
description() - Method in class net.imagej.types.DataType16BitSignedInteger
description() - Method in class net.imagej.types.DataType16BitUnsignedInteger
description() - Method in class net.imagej.types.DataType1BitUnsignedInteger
description() - Method in class net.imagej.types.DataType32BitSignedFloat
description() - Method in class net.imagej.types.DataType32BitSignedInteger
description() - Method in class net.imagej.types.DataType32BitUnsignedInteger
description() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
description() - Method in class net.imagej.types.DataType64BitSignedFloat
description() - Method in class net.imagej.types.DataType64BitSignedInteger
description() - Method in class net.imagej.types.DataType8BitSignedInteger
description() - Method in class net.imagej.types.DataType8BitUnsignedInteger
description() - Method in class net.imagej.types.DataTypeBoolean
description() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
description() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
description() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
description(String, FileObject) - Method in class net.imagej.ui.swing.updater.FileDetails
description - Variable in class net.imagej.updater.FileObject
descriptionFromPOM - Variable in class net.imagej.updater.FileObject
deselectAll() - Method in class net.imagej.display.OverlayInfoList
DeselectOverlays - Class in net.imagej.plugins.commands.display: Deselects all the overlays linked to the given display.
DeselectOverlays() - Constructor for class net.imagej.plugins.commands.display.DeselectOverlays
detectJunctions(List<? extends WritablePolyline>) - Method in class net.imagej.ops.segment.SegmentNamespace
detectJunctions(List<? extends WritablePolyline>, double) - Method in class net.imagej.ops.segment.SegmentNamespace
detectRidges(RandomAccessibleInterval<T>, double, double, double, int) - Method in class net.imagej.ops.segment.SegmentNamespace
dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class net.imagej.legacy.ui.LegacyUI
diff - Variable in class net.imagej.ui.swing.updater.DiffFile
diff(List<String>) - Method in class net.imagej.updater.CommandLine
Diff - Class in net.imagej.updater: Show differences between remote and local versions of files.
Diff(PrintStream) - Constructor for class net.imagej.updater.Diff: Deprecated.
Diff(PrintStream, UpdaterUtil) - Constructor for class net.imagej.updater.Diff: Construct a Diff object.
Diff.Mode - Enum in net.imagej.updater
differenceEntropy(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
differenceEntropy(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
differenceVariance(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
differenceVariance(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
DiffFile - Class in net.imagej.ui.swing.updater: A JFrame to show the differences between the remote and local versions of a file known to the ImageJ Updater.
DiffFile(FilesCollection, FileObject, Diff.Mode) - Constructor for class net.imagej.ui.swing.updater.DiffFile: Initialize the frame.
diffOffset - Variable in class net.imagej.ui.swing.updater.DiffFile
diffView - Variable in class net.imagej.ui.swing.updater.DiffFile
DiffView - Class in net.imagej.ui.swing.updater: A scroll pane that colorizes diff output.
DiffView() - Constructor for class net.imagej.ui.swing.updater.DiffView: Create a colorized diff view.
dilate(RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace
dilate(IterableInterval<T>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace
dilate(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, boolean) - Method in class net.imagej.ops.morphology.MorphologyNamespace
dilate(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, boolean, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
dilate(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
dilate(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
dilate(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>, boolean) - Method in class net.imagej.ops.morphology.MorphologyNamespace
DilateBinaryImage - Class in net.imagej.plugins.commands.binary: Does a morphological dilate operation on a binary image.
DilateBinaryImage() - Constructor for class net.imagej.plugins.commands.binary.DilateBinaryImage
dimension(AxisType) - Method in interface net.imagej.Dataset: Gets the length of the axis with the given AxisType.
dimension(int) - Method in class net.imagej.DefaultDataset
dimension(int) - Method in class net.imagej.display.DefaultImageDisplay
dimension(int) - Method in class net.imagej.ImgPlus
dimension(int) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
dimension(int) - Method in class net.imagej.Position: Returns the dimension of the Position's parent Extents at a given i.
dimension(int) - Method in class net.imagej.table.ResultsImg
dimensionIndex(AxisType) - Method in class net.imagej.DefaultDataset
dimensionIndex(AxisType) - Method in class net.imagej.display.DefaultImageDisplay
dimensionIndex(AxisType) - Method in class net.imagej.space.CombinedSpace
dimensionIndex(AxisType) - Method in interface net.imagej.space.TypedSpace: Gets the dimensional index of the axis with the given type.
dimensions(long[]) - Method in class net.imagej.DefaultDataset
dimensions(long[]) - Method in class net.imagej.display.DefaultImageDisplay
dimensions(long[]) - Method in class net.imagej.ImgPlus
dimensions(long[]) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
dimensions(long[]) - Method in class net.imagej.table.ResultsImg
dimensionsIJ1Compatible(Dataset) - Static method in class net.imagej.legacy.translate.LegacyUtils: Determines if a Dataset's dimensions cannot be represented within a legacy ImageJ ImageStack.
dimensionsRealToComplex(boolean, Dimensions, long[], long[]) - Static method in class net.imagej.ops.filter.fft.FFTMethodsUtility: Calculates padding size and complex FFT size for real to complex FFT
DimSelectionWidget - Interface in net.imagej.ui.swing.widget: Widget interface for dimension selectors.
DimSelectionWidget - Interface in net.imagej.widget: Widget interface for dimension selectors.
directionality(RandomAccessibleInterval, int) - Method in class net.imagej.ops.features.tamura2d.TamuraNamespace
directionality(O, RandomAccessibleInterval, int) - Method in class net.imagej.ops.features.tamura2d.TamuraNamespace
directories - Variable in class net.imagej.patcher.HeadlessGenericDialog
directories - Static variable in class net.imagej.updater.Checksummer
disableIJ1PluginDirs() - Method in class imagej.patcher.LegacyEnvironment: Deprecated.
disableIJ1PluginDirs() - Method in class net.imagej.patcher.LegacyEnvironment: Disallows the encapsulated ImageJ 1.x from parsing the directories listed in ij1.plugin.dirs.
disableInitializer() - Method in class net.imagej.patcher.LegacyEnvironment: Disables the execution of the ij1.patcher.initializer.
disableRowLabels() - Method in class net.imagej.legacy.convert.TableWrapper
disconnectSession() - Method in class net.imagej.plugins.uploaders.ssh.SSHFileUploader
dispatcher - Variable in class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer
display(Object) - Method in class net.imagej.display.DefaultImageDisplay
display(Object) - Method in class net.imagej.notebook.DefaultNotebookService
display(Object) - Method in interface net.imagej.notebook.NotebookService: Converts the given object to a form renderable by scientific notebooks.
display(Map<?, ?>) - Method in interface net.imagej.notebook.NotebookService: Converts the given map data to a form renderable by scientific notebooks.
display(Map<?, T>, String) - Method in interface net.imagej.notebook.NotebookService: Converts the given map data to a form renderable by scientific notebooks.
display(List<?>) - Method in interface net.imagej.notebook.NotebookService: Converts the given list data to a form renderable by scientific notebooks.
display(List<?>, String) - Method in interface net.imagej.notebook.NotebookService: Converts the given list data to a form renderable by scientific notebooks.
display(List<?>, List<String>) - Method in interface net.imagej.notebook.NotebookService: Converts the given list data to a form renderable by scientific notebooks.
display(List<T>, String, List<String>) - Method in interface net.imagej.notebook.NotebookService: Converts the given list data to a form renderable by scientific notebooks.
display(Dataset) - Method in interface net.imagej.notebook.NotebookService: Converts the given image to a form renderable by scientific notebooks.
display(RandomAccessibleInterval<T>) - Method in interface net.imagej.notebook.NotebookService: Converts the given image to a form renderable by scientific notebooks.
display(RandomAccessibleInterval<T>, double, double) - Method in interface net.imagej.notebook.NotebookService: Converts the given image to a form renderable by scientific notebooks.
display(RandomAccessibleInterval<T>, double[], double[]) - Method in interface net.imagej.notebook.NotebookService: Converts the given image to a form renderable by scientific notebooks.
display(RandomAccessibleInterval<T>, int, int, int, NotebookService.ValueScaling, long...) - Method in interface net.imagej.notebook.NotebookService: Converts the given image to a form renderable by scientific notebooks.
display(RandomAccessibleInterval<T>, int, int, int, double[], double[], long...) - Method in interface net.imagej.notebook.NotebookService: Converts the given image to a form renderable by scientific notebooks.
display - Variable in class net.imagej.plugins.commands.assign.MathCommand
DisplayCreator - Class in net.imagej.legacy.translate: Class to create a Dataset which is linked to an ImagePlus.
DisplayCreator(Context) - Constructor for class net.imagej.legacy.translate.DisplayCreator
DisplayHarmonizer - Interface in net.imagej.legacy.translate: General interface for all DisplayHarmonizers.
displayService - Variable in class net.imagej.plugins.commands.assign.MathCommand
displayTypeChanged() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
dispose() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
dispose() - Method in class imagej.patcher.LegacyHooks: Deprecated.

Disposes of the hooks.
dispose() - Method in class net.imagej.animation.DefaultAnimationService
dispose() - Method in class net.imagej.display.AbstractDataView
dispose() - Method in interface net.imagej.display.DataView: Discards the view, performing any needed cleanup.
dispose() - Method in class net.imagej.legacy.DefaultLegacyHooks
dispose() - Method in class net.imagej.legacy.IJ1Helper: Forcibly shuts down ImageJ1, with no user interaction or opportunity to cancel.
dispose() - Method in class net.imagej.legacy.LegacyService
dispose() - Method in class net.imagej.legacy.ui.LegacyUI
dispose() - Method in class net.imagej.patcher.HeadlessGenericDialog
dispose() - Method in class net.imagej.patcher.LegacyHooks: Disposes of the hooks.
dispose() - Method in class net.imagej.server.DefaultImageJServerService
dispose() - Method in class net.imagej.tensorflow.DefaultTensorFlowService
dispose() - Method in class net.imagej.ui.swing.updater.ReviewSiteURLsDialog
dispose() - Method in class net.imagej.ui.swing.updater.SitesDialog
dispose() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
dispose() - Method in class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer: NB: a reference to the imgCanvas is held, ultimately, by a finalizable parent of a javax.swing.JViewport.
dispose() - Method in class net.imagej.ui.swing.viewer.image.DatasetFigureView
dispose() - Method in interface net.imagej.ui.swing.viewer.image.FigureView: Removes the figure from the scene.
dispose() - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas: Clears any resources associated with this canvas.
dispose() - Method in class net.imagej.ui.swing.viewer.image.OverlayFigureView
disposing() - Method in class net.imagej.legacy.DefaultLegacyHooks
disposing() - Method in class net.imagej.patcher.LegacyHooks: Allows interception of ImageJ 1.x's disposal routine while quitting.
distance - Variable in class net.imagej.ops.features.haralick.AbstractHaralickFeature
distanceToPlane(Vector3D) - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet: Computes the distance from a point to this facet
distancetransform(RandomAccessibleInterval<T>, RandomAccessibleInterval) - Method in class net.imagej.ops.image.ImageNamespace: Executes the "distancetransform" operation on the given arguments.
distancetransform(RandomAccessibleInterval) - Method in class net.imagej.ops.image.ImageNamespace: Executes the "distancetransform" operation on the given arguments.
distancetransform(RandomAccessibleInterval<T>, RandomAccessibleInterval, double...) - Method in class net.imagej.ops.image.ImageNamespace: Executes the "distancetransform" operation on the given arguments.
distancetransform(RandomAccessibleInterval, double...) - Method in class net.imagej.ops.image.ImageNamespace: Executes the "distancetransform" operation on the given arguments.
DistanceTransform2D,T extends RealType<T>> - Class in net.imagej.ops.image.distancetransform: Computes a distance transform, i.e.
DistanceTransform2D() - Constructor for class net.imagej.ops.image.distancetransform.DistanceTransform2D
DistanceTransform2DCalibration,T extends RealType<T>> - Class in net.imagej.ops.image.distancetransform: Computes a distance transform, i.e.
DistanceTransform2DCalibration() - Constructor for class net.imagej.ops.image.distancetransform.DistanceTransform2DCalibration
DistanceTransform3D,T extends RealType<T>> - Class in net.imagej.ops.image.distancetransform: Computes a distance transform, i.e.
DistanceTransform3D() - Constructor for class net.imagej.ops.image.distancetransform.DistanceTransform3D
DistanceTransform3DCalibration,T extends RealType<T>> - Class in net.imagej.ops.image.distancetransform: Computes a distance transform, i.e.
DistanceTransform3DCalibration() - Constructor for class net.imagej.ops.image.distancetransform.DistanceTransform3DCalibration
div(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
div(Output<T>, Output) - Method in class net.imagej.tensorflow.GraphBuilder
div(Output<T>, Output, String) - Method in class net.imagej.tensorflow.GraphBuilder
div(BigComplex, BigComplex) - Method in class net.imagej.types.BigComplex: Set self to the result of division between two BigComplex values.
div(BigComplex) - Method in class net.imagej.types.BigComplex: Divides self by another BigComplex value.
div(PreciseFixedComplexFloatType, PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
div(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
div(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
div(PreciseFixedFloatType, PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
div(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
Divide() - Constructor for class net.imagej.ops.math.BinaryRealTypeMath.Divide
Divide() - Constructor for class net.imagej.ops.math.ConstantToIIOutputII.Divide
Divide() - Constructor for class net.imagej.ops.math.ConstantToIIOutputRAI.Divide
Divide() - Constructor for class net.imagej.ops.math.IIToIIOutputII.Divide
Divide() - Constructor for class net.imagej.ops.math.IIToRAIOutputII.Divide
divide(ArrayImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace
divide(ArrayImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace
divide(ArrayImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace
divide(ArrayImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace
divide(ArrayImg<N, LongArray>, long) - Method in class net.imagej.ops.math.MathNamespace
divide(ArrayImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace
divide(double, double) - Method in class net.imagej.ops.math.MathNamespace
divide(float, float) - Method in class net.imagej.ops.math.MathNamespace
divide(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
divide(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
divide(int, int) - Method in class net.imagej.ops.math.MathNamespace
divide(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
divide(IterableInterval<T>, IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
divide(IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
divide(IterableInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
divide(long, long) - Method in class net.imagej.ops.math.MathNamespace
divide(O, I1, I2, double) - Method in class net.imagej.ops.math.MathNamespace
divide(PlanarImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace
divide(PlanarImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace
divide(PlanarImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace
divide(PlanarImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace
divide(PlanarImg<N, LongArray>, long) - Method in class net.imagej.ops.math.MathNamespace
divide(PlanarImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace
divide(RandomAccessibleInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
divide(T, T) - Method in class net.imagej.ops.math.MathNamespace
divide(T, T, T) - Method in class net.imagej.ops.math.MathNamespace
Divide() - Constructor for class net.imagej.ops.math.NumericTypeBinaryMath.Divide
DivideByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideByte
DivideByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideByte
DivideByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideByte
divideCompositeOverlay(CompositeOverlay) - Method in class net.imagej.display.DefaultOverlayService
divideCompositeOverlay(CompositeOverlay) - Method in interface net.imagej.display.OverlayService: Divides a CompositeOverlay into its constituent parts and registers each part with the appropriate displays.
DivideDataValuesBy<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign: Fills an output Dataset by dividing an input Dataset by a user defined constant value.
DivideDataValuesBy() - Constructor for class net.imagej.plugins.commands.assign.DivideDataValuesBy
DivideDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideDouble
DivideDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideDouble
DivideDouble() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideDouble
DivideFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideFloat
DivideFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideFloat
DivideFloat() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideFloat
DivideInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideInt
DivideInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideInt
DivideInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideInt
DivideLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideLong
DivideLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideLong
DivideLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideLong
DivideShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideShort
DivideShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideShort
DivideShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideShort
DivideUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedByte
DivideUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedByte
DivideUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedByte
DivideUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedInt
DivideUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedInt
DivideUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedInt
DivideUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedLong
DivideUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedLong
DivideUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedLong
DivideUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedShort
DivideUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedShort
DivideUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedShort
DllFile - Class in net.imagej.updater: Analyses .dll files whether they are really different.
DllFile(File) - Constructor for class net.imagej.updater.DllFile: Constructs a .dll file parser.
document - Variable in class net.imagej.ui.swing.updater.DiffView
doesPlatformMatch() - Method in class net.imagej.updater.FilesCollection
dog(RandomAccessibleInterval<T>, UnaryComputerOp<RandomAccessibleInterval<T>, RandomAccessibleInterval<T>>, UnaryComputerOp<RandomAccessibleInterval<T>, RandomAccessibleInterval<T>>, UnaryFunctionOp<RandomAccessibleInterval<T>, RandomAccessibleInterval<T>>, UnaryFunctionOp<RandomAccessibleInterval<T>, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace
dog(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, UnaryComputerOp<RandomAccessibleInterval<T>, RandomAccessibleInterval<T>>, UnaryComputerOp<RandomAccessibleInterval<T>, RandomAccessibleInterval<T>>, UnaryFunctionOp<RandomAccessibleInterval<T>, RandomAccessibleInterval<T>>, UnaryFunctionOp<RandomAccessibleInterval<T>, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace
dog(RandomAccessibleInterval<V>, RandomAccessibleInterval<T>, double[], double[], OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace
dog(RandomAccessibleInterval<V>, RandomAccessibleInterval<T>, double[], double...) - Method in class net.imagej.ops.filter.FilterNamespace
dog(RandomAccessibleInterval<T>, double[], double...) - Method in class net.imagej.ops.filter.FilterNamespace
dog(RandomAccessibleInterval<V>, RandomAccessibleInterval<T>, double, double, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace
dog(RandomAccessibleInterval<V>, RandomAccessibleInterval<T>, double, double) - Method in class net.imagej.ops.filter.FilterNamespace
dog(RandomAccessibleInterval<T>, double, double) - Method in class net.imagej.ops.filter.FilterNamespace
DoGSingleSigmas<T extends NumericType<T> & NativeType<T>> - Class in net.imagej.ops.filter.dog: Difference of Gaussians (DoG) implementation where all sigmas are the same in each dimension.
DoGSingleSigmas() - Constructor for class net.imagej.ops.filter.dog.DoGSingleSigmas
DoGVaryingSigmas<T extends NumericType<T> & NativeType<T>> - Class in net.imagej.ops.filter.dog: Difference of Gaussians (DoG) implementation where sigmas can vary by dimension.
DoGVaryingSigmas() - Constructor for class net.imagej.ops.filter.dog.DoGVaryingSigmas
done() - Method in class net.imagej.ui.swing.updater.ProgressDialog
done() - Method in class net.imagej.updater.FilesUploader.VerifyTimestamp
done() - Method in class net.imagej.updater.util.AbstractProgressable
done() - Method in interface net.imagej.updater.util.Progress
done() - Method in class net.imagej.updater.util.StderrProgress
dontCall(int) - Static method in class net.imagej.patcher.JavaAgent
doOperation(CompositeOverlay.Operation, Overlay) - Method in class net.imagej.overlay.CompositeOverlay
doRefresh() - Method in class net.imagej.ui.swing.widget.SwingColorTableWidget
doRefresh() - Method in class net.imagej.ui.swing.widget.SwingDimSelectionWidget
doRefresh() - Method in class net.imagej.ui.swing.widget.SwingHistogramWidget
dot(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
DOT_DASH_LINE_STYLE - Static variable in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter
DOT_LINE_STYLE - Static variable in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter
dotCounter - Variable in class net.imagej.updater.util.StderrProgress
dotDashLineStyle - Static variable in class net.imagej.options.OptionsOverlay
dotDiv(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
dotLineStyle - Static variable in class net.imagej.options.OptionsOverlay
dotMul(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
dotPow(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
DotProduct(Img<T>, Img<T>) - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator
dotRightDiv(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
dotTranspose(Object) - Method in class net.imagej.ops.eval.OpEvaluator
DoubleAbs() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleAbs
DoubleAdd() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleAdd
DoubleArccos() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleArccos
DoubleArcsin() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleArcsin
DoubleArctan() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleArctan
DoubleBinaryEquationOp<T> - Interface in net.imagej.ops.image.equation: An equation operation which computes image values from real coordinates using a binary lambda.
DoubleCeil() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleCeil
DoubleCos() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleCos
DoubleCosh() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleCosh
DoubleCubeRoot() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleCubeRoot
DoubleDivide() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleDivide
DoubleEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.DoubleEqual
DoubleExp() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleExp
DoubleFloor() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleFloor
DoubleGreaterThan() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.DoubleGreaterThan
DoubleGreaterThanOrEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.DoubleGreaterThanOrEqual
DoubleLessThan() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.DoubleLessThan
DoubleLessThanOrEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.DoubleLessThanOrEqual
DoubleLog() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleLog
DoubleLog10() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleLog10
DoubleLogOnePlusX() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleLogOnePlusX
DoubleMax() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleMax
DoubleMin() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleMin
DoubleMultiply() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleMultiply
DoubleNegate() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleNegate
DoubleNotEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.DoubleNotEqual
DoublePower() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoublePower
DoubleRemainder() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleRemainder
DoubleRound() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleRound
DoubleSignum() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleSignum
DoubleSin() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleSin
DoubleSinh() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleSinh
DoubleSqrt() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleSqrt
DoubleSubtract() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleSubtract
DoubleTan() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleTan
DoubleTanh() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleTanh
DoubleToDoubleTypeConverter() - Constructor for class net.imagej.server.converter.NumberToNumericTypeConverters.DoubleToDoubleTypeConverter
DoubleToImagePlusConverter - Class in net.imagej.legacy.convert: Converts an image ID in double form to its corresponding ImagePlus object.
DoubleToImagePlusConverter() - Constructor for class net.imagej.legacy.convert.DoubleToImagePlusConverter
downcastFigure(Figure) - Static method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
downcastOverlay(Overlay) - Static method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
downcastOverlay(Overlay) - Static method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter
downgrade(List<String>) - Method in class net.imagej.updater.CommandLine
download(FileObject) - Method in class net.imagej.updater.CommandLine
download(Downloadable) - Method in class net.imagej.updater.util.Downloader
Downloadable - Interface in net.imagej.updater.util: Represents a file to be downloaded from an update site.
Downloader - Class in net.imagej.updater.util: Direct responsibility: Download a list of files given their respective URLs to their respective destinations.
Downloader() - Constructor for class net.imagej.updater.util.Downloader: Deprecated.
Downloader(Progress) - Constructor for class net.imagej.updater.util.Downloader: Deprecated.
Downloader(Progress, UpdaterUtil) - Constructor for class net.imagej.updater.util.Downloader
downloadImage(client, long) - Method in class net.imagej.omero.DefaultOMEROService
downloadImage(client, long) - Method in interface net.imagej.omero.OMEROService: Downloads the image with the given image ID from OMERO, storing the result into a new ImageJ Dataset.
downloadIndexAndChecksum(Progress) - Method in class net.imagej.updater.FilesCollection
downloadROI(OMEROLocation, long) - Method in class net.imagej.omero.DefaultOMEROService
downloadROI(OMEROLocation, long) - Method in interface net.imagej.omero.OMEROService: Downloads the ROIData with the given roiID from OMERO, and returns it as a ROITree.
downloadROIs(OMEROLocation, long) - Method in class net.imagej.omero.DefaultOMEROService
downloadROIs(OMEROLocation, long) - Method in interface net.imagej.omero.OMEROService: Downloads the ROIs associated with the given imageID from OMERO, and returns them as a ROITree.
downloadTable(OMEROLocation, long) - Method in class net.imagej.omero.DefaultOMEROService
downloadTable(OMEROLocation, long) - Method in interface net.imagej.omero.OMEROService: Downloads the table with the given ID from OMERO, storing the result into a new ImageJ Table.
downloadTables(OMEROLocation, long) - Method in class net.imagej.omero.DefaultOMEROService
downloadTables(OMEROLocation, long) - Method in interface net.imagej.omero.OMEROService: Downloads all tables associated with the given image ID in OMERO.
draw(Graphics2D) - Method in class net.imagej.ui.swing.overlay.PointFigure
draw() - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
draw(Graphics2D) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
drawDot(long, long) - Method in class net.imagej.DrawingTool: Draws a dot in the current UV plane at specified UV coordinates.
drawFill(Graphics2D) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
drawFill(Graphics2D) - Method in class net.imagej.ui.swing.overlay.PointFigure
drawFill(Graphics2D) - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
drawIcon() - Method in class net.imagej.plugins.tools.AbstractColorTool
DrawingTool - Class in net.imagej: Draws data across all channels in an orthoplane of a Dataset.
DrawingTool(Dataset, RenderingService) - Constructor for class net.imagej.DrawingTool: Creates a DrawingTool to modify a specified Dataset.
drawLine(long, long, long, long) - Method in class net.imagej.DrawingTool: Draws a line from (u1,v1) to (u2,v2).
drawNames(boolean) - Method in class net.imagej.omero.legacy.LazyOverlay
drawOverlay(Overlay, ImageDisplay, ChannelCollection) - Method in class net.imagej.display.DefaultOverlayService
drawOverlay(Overlay, Dataset, Position, ChannelCollection) - Method in class net.imagej.display.DefaultOverlayService
drawOverlay(Overlay, ImageDisplay, ChannelCollection) - Method in interface net.imagej.display.OverlayService: Draws the outline of a given overlay in a display using the set of channel information provided.
drawOverlay(Overlay, Dataset, Position, ChannelCollection) - Method in interface net.imagej.display.OverlayService: Draws the outline of a given overlay in a dataset using the set of channel information provided.
drawPixel(long, long) - Method in class net.imagej.DrawingTool: Draws a pixel in the current UV plane at specified UV coordinates.
drawRect(long, long, long, long) - Method in class net.imagej.DrawingTool: Draws the outline of a rectangle in the current UV plane.
drawStroke(Graphics2D) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
drawStroke(Graphics2D) - Method in class net.imagej.ui.swing.overlay.PointFigure
drawStroke(Graphics2D) - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
drawText(long, long, String, TextRenderer.TextJustification) - Method in class net.imagej.DrawingTool: Draws a line of text along the U axis
drop(File, Display<?>) - Method in class net.imagej.ui.dnd.LUTFileDragAndDropHandler
DropboxURLMapper - Class in net.imagej.updater.util: Maps pseudo-DropBox URLs to valid ones.
DropboxURLMapper(UpdaterUtil) - Constructor for class net.imagej.updater.util.DropboxURLMapper: Constructs a Dropbox URL mapper for use in a specific Util instance.
dropboxURLMapper - Variable in class net.imagej.updater.util.UpdaterUtil
dropSingletonDimensionsView(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.TransformNamespace: Removes all unit dimensions (dimensions with size one) from the RandomAccessibleInterval
dummy() - Method in class net.imagej.legacy.ui.AbstractLegacyAdapter: Returns true iff the linked LegacyService is not fully active.
DummyRenderingService - Class in net.imagej.render: No-op implementation of text rendering service.
DummyRenderingService() - Constructor for class net.imagej.render.DummyRenderingService
DummyScreenCaptureService - Class in net.imagej.display: A No-op implementation of the ScreenCaptureService interface.
DummyScreenCaptureService() - Constructor for class net.imagej.display.DummyScreenCaptureService
DummyTextRenderer - Class in net.imagej.render: A dummy implementation of the TextRenderer interface.
DummyTextRenderer() - Constructor for class net.imagej.render.DummyTextRenderer
duplicate() - Method in interface net.imagej.Dataset: Creates a copy of the dataset.
duplicate() - Method in class net.imagej.DefaultDataset
duplicate() - Method in class net.imagej.omero.legacy.LazyOverlay
duplicate() - Method in class net.imagej.overlay.AbstractOverlay
duplicate() - Method in class net.imagej.overlay.BinaryMaskOverlay
duplicate() - Method in interface net.imagej.overlay.Overlay
duplicate(ImageDisplay) - Method in class net.imagej.sampler.DefaultSamplerService
duplicate(ImageDisplay) - Method in interface net.imagej.sampler.SamplerService: Creates a copy of an existing ImageDisplay.
duplicateBlank() - Method in interface net.imagej.Dataset: Creates a copy of the dataset, but without copying any pixel values.
duplicateBlank() - Method in class net.imagej.DefaultDataset
DuplicateImage - Class in net.imagej.plugins.commands.imglib: Duplicates data from one input display to an output display.
DuplicateImage() - Constructor for class net.imagej.plugins.commands.imglib.DuplicateImage
DuplicateImageContext - Class in net.imagej.plugins.commands.imglib: Context menu plugin for Duplicate command.
DuplicateImageContext() - Constructor for class net.imagej.plugins.commands.imglib.DuplicateImageContext
duplicateSelectedCompositePlane(ImageDisplay) - Method in class net.imagej.sampler.DefaultSamplerService
duplicateSelectedCompositePlane(ImageDisplay) - Method in interface net.imagej.sampler.SamplerService: Creates a multichannel copy of the currently selected 2d region of an ImageDisplay.
duplicateSelectedPlane(ImageDisplay) - Method in class net.imagej.sampler.DefaultSamplerService
duplicateSelectedPlane(ImageDisplay) - Method in interface net.imagej.sampler.SamplerService: Creates a copy of the currently selected 2d region of an ImageDisplay.
duplicateSelectedPlanes(ImageDisplay) - Method in class net.imagej.sampler.DefaultSamplerService
duplicateSelectedPlanes(ImageDisplay) - Method in interface net.imagej.sampler.SamplerService: Creates a copy of all the planes bounded by the currently selected 2d region of an ImageDisplay.

E

E() - Method in class net.imagej.types.BigComplex: Fills self with the representation of e for the given type.
EasterEgg - Class in net.imagej.plugins.commands.app: Mysterious!
EasterEgg() - Constructor for class net.imagej.plugins.commands.app.EasterEgg
easy - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
easyMode - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
eccentricity(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
eccentricity(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
EditAxes - Class in net.imagej.plugins.commands.restructure: Changes the types and calibrations of the existing axes of a Dataset.
EditAxes() - Constructor for class net.imagej.plugins.commands.restructure.EditAxes
EIGHT - Static variable in class net.imagej.plugins.commands.binary.AbstractMorphOpsCommand
EllipseJHotDrawAdapter - Class in net.imagej.ui.swing.overlay: JHotDraw adapter for ellipse overlays.
EllipseJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
EllipseOverlay - Class in net.imagej.overlay: An ellipse bounded by an axis-aligned rectangle, backed by an EllipseRegionOfInterest.
EllipseOverlay() - Constructor for class net.imagej.overlay.EllipseOverlay
EllipseOverlay(Context) - Constructor for class net.imagej.overlay.EllipseOverlay
EllipsoidToOvalRoiConverter - Class in net.imagej.legacy.convert.roi.ellipsoid: Converts an Ellipsoid to an OvalRoi.
EllipsoidToOvalRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidToOvalRoiConverter
EllipsoidWrapper - Class in net.imagej.legacy.convert.roi.ellipsoid: A OvalRoi with an associated WritableEllipsoid.
EllipsoidWrapper(WritableEllipsoid) - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidWrapper
enableIJ1PluginDirs(boolean) - Method in class imagej.patcher.LegacyHooks: Deprecated.
enableIJ1PluginDirs(boolean) - Method in class net.imagej.patcher.LegacyHooks
enableYesNoCancel() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
enableYesNoCancel(String, String) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
enableYesNoCancel() - Method in class net.imagej.patcher.HeadlessGenericDialog
enableYesNoCancel(String, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
encode(RenderedImage) - Static method in class net.imagej.notebook.Images: Converts the given RenderedImage into a stream of PNG bytes.
encode(RenderedImage, String) - Static method in class net.imagej.notebook.Images: Converts the given RenderedImage into a stream of bytes.
end - Static variable in class net.imagej.updater.util.StderrProgress
endDocument() - Method in class net.imagej.updater.POMParser
endDocument() - Method in class net.imagej.updater.XMLFileReader
endElement(String, String, String) - Method in class net.imagej.updater.POMParser
endElement(String, String, String) - Method in class net.imagej.updater.XMLFileReader
endpointOne() - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper
endpointOne() - Method in class net.imagej.omero.roi.line.DefaultOMEROLine
endpointTwo() - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper
endpointTwo() - Method in class net.imagej.omero.roi.line.DefaultOMEROLine
endsWith(String) - Method in class net.imagej.updater.FilesCollection
entropy(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
entropy(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
EnumeratedAxis - Class in net.imagej.axis: A CalibratedAxis whose coordinate values are explicitly enumerated by a list.
EnumeratedAxis(AxisType, List<? extends Number>) - Constructor for class net.imagej.axis.EnumeratedAxis: Creates an axis whose calibrated values are defined by the given list of values.
EnumeratedAxis(AxisType, double[]) - Constructor for class net.imagej.axis.EnumeratedAxis: Creates an axis whose calibrated values are defined by the given values array.
EnumeratedAxis(AxisType, String, double[]) - Constructor for class net.imagej.axis.EnumeratedAxis: Creates an axis whose calibrated values are defined by the given values array.
Environmental - Interface in net.imagej.ops: An interface for objects which have an OpEnvironment.
equal(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
equal(boolean, boolean) - Method in class net.imagej.ops.logic.LogicNamespace
equal(int, int) - Method in class net.imagej.ops.logic.LogicNamespace
equal(long, long) - Method in class net.imagej.ops.logic.LogicNamespace
equal(float, float) - Method in class net.imagej.ops.logic.LogicNamespace
equal(double, double) - Method in class net.imagej.ops.logic.LogicNamespace
equal(T, Object, Object) - Method in class net.imagej.ops.logic.LogicNamespace
equals(Object) - Method in class net.imagej.axis.AbstractCalibratedAxis
equals(Object) - Method in class net.imagej.axis.EnumeratedAxis
equals(Object) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper
equals(Object) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
equals(Object) - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper
equals(Object) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper
equals(Object) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper
equals(Object) - Method in class net.imagej.legacy.convert.roi.polygon2d.UnmodifiablePolygonRoiWrapper
equals(Object) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper
equals(Object) - Method in class net.imagej.legacy.convert.roi.polyline.UnmodifiablePolylineRoiWrapper
equals(Object) - Method in class net.imagej.omero.OMEROLocation
equals(Object) - Method in class net.imagej.omero.roi.ellipse.AbstractOMEROEllipse
equals(Object) - Method in class net.imagej.omero.roi.line.DefaultOMEROLine
equals(Object) - Method in class net.imagej.omero.roi.mask.DefaultOMEROMask
equals(Object) - Method in class net.imagej.omero.roi.point.DefaultOMEROPoint
equals(Object) - Method in class net.imagej.omero.roi.polyshape.AbstractOMEROPolygon
equals(Object) - Method in class net.imagej.omero.roi.polyshape.DefaultOMEROPolyline
equals(Object) - Method in class net.imagej.omero.roi.rectangle.AbstractOMERORectangle
equals(Object) - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
equals(Object) - Method in class net.imagej.ops.OpInfo
equals(Object) - Method in class net.imagej.ops.OpRef
equals(Object) - Method in class net.imagej.tensorflow.TensorFlowVersion
equals(File, URL) - Static method in class net.imagej.updater.DllFile: Compares two .dll files, skipping time stamp entries, checksums and the likes.
equals(URLConnection) - Method in class net.imagej.updater.DllFile: Determines whether two .dll files are functionally equal.
equals(Object) - Method in class net.imagej.updater.FileObject.Version
equals(FileObject.Version) - Method in class net.imagej.updater.FileObject.Version
equals(Object) - Method in class net.imagej.updater.UpdateSite
equation(String) - Method in class net.imagej.ops.image.ImageNamespace: Executes the "equation" operation on the given arguments.
equation(IterableInterval<T>, String) - Method in class net.imagej.ops.image.ImageNamespace: Executes the "equation" operation on the given arguments.
equation(IterableInterval<T>, UnaryFunctionOp<long[], Double>) - Method in class net.imagej.ops.image.ImageNamespace: Executes the "equation" operation on the given arguments.
equation(IterableInterval<T>, DoubleBinaryOperator) - Method in class net.imagej.ops.image.ImageNamespace: Executes the "equation" operation on the given arguments.
EquationDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign: Fills a region of a Dataset with the point by point calculation of a user specified equation.
EquationDataValues() - Constructor for class net.imagej.plugins.commands.assign.EquationDataValues
EquationOp<T> - Interface in net.imagej.ops.image.equation: An "equation" operation which computes image values from interval coordinates using an equation.
erode(RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace
erode(IterableInterval<T>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace
erode(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, boolean) - Method in class net.imagej.ops.morphology.MorphologyNamespace
erode(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, boolean, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
erode(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
erode(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
erode(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>, boolean) - Method in class net.imagej.ops.morphology.MorphologyNamespace
ErodeBinaryImage - Class in net.imagej.plugins.commands.binary: Does a morphological erode operation on a binary image.
ErodeBinaryImage() - Constructor for class net.imagej.plugins.commands.binary.ErodeBinaryImage
err - Variable in class net.imagej.plugins.uploaders.ssh.SSHFileUploader
error(Throwable) - Method in class imagej.patcher.EssentialLegacyHooks: Deprecated.
error(Throwable) - Method in class imagej.patcher.LegacyHooks: Deprecated.

Shows an exception.
error(Throwable) - Method in class net.imagej.legacy.DefaultLegacyHooks
error(Throwable) - Method in class net.imagej.patcher.EssentialLegacyHooks
error(Throwable) - Method in class net.imagej.patcher.LegacyHooks: Shows an exception.
error(String) - Method in class net.imagej.ui.swing.updater.FileTable
error(String) - Method in class net.imagej.ui.swing.updater.SitesDialog
error(String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
error(String) - Method in class net.imagej.ui.swing.updater.UpdaterFrame
error(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
error - Variable in class net.imagej.updater.util.Downloader
error(String) - Method in class net.imagej.updater.util.UpdaterUserInterface
error(String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
error(SAXParseException) - Method in class net.imagej.updater.XMLFileErrorHandler
errorIfDebian() - Static method in class net.imagej.ui.swing.updater.ImageJUpdater: If this seems to be the Debian packaged version of ImageJ, then produce an error and return true.
errorIfNetworkInaccessible(LogService) - Static method in class net.imagej.ui.swing.updater.ImageJUpdater: If there is no network connection, then produce an error and return true.
errorMessage - Variable in class imagej.patcher.HeadlessGenericDialog: Deprecated.
errorMessage - Variable in class net.imagej.patcher.HeadlessGenericDialog
escapeCancels(JDialog) - Static method in class net.imagej.ui.swing.updater.SitesDialog
EssentialLegacyHooks - Class in imagej.patcher: Deprecated.
EssentialLegacyHooks() - Constructor for class imagej.patcher.EssentialLegacyHooks: Deprecated.
EssentialLegacyHooks - Class in net.imagej.patcher: The base LegacyHooks to be used in the patched ImageJ 1.x.
EssentialLegacyHooks() - Constructor for class net.imagej.patcher.EssentialLegacyHooks
EulerCharacteristic26N> - Class in net.imagej.ops.topology.eulerCharacteristic: An Op which calculates the euler characteristic (χ) of the given 3D binary image.
Here Euler characteristic is defined as χ = β_0 - β_1 + β_2, where β_i are so called Betti numbers β_0 = number of separate particles β_1 = number of handles β_2 = number enclosed cavities
EulerCharacteristic26N() - Constructor for class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26N
eulerCharacteristic26N(RandomAccessibleInterval) - Method in class net.imagej.ops.topology.TopologyNamespace
eulerCharacteristic26N(DoubleType, RandomAccessibleInterval) - Method in class net.imagej.ops.topology.TopologyNamespace
EulerCharacteristic26NFloating> - Class in net.imagej.ops.topology.eulerCharacteristic: An Op which calculates the euler characteristic (χ) of the given binary image.
EulerCharacteristic26NFloating() - Constructor for class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26NFloating
eulerCharacteristic26NFloating(RandomAccessibleInterval) - Method in class net.imagej.ops.topology.TopologyNamespace
eulerCharacteristic26NFloating(DoubleType, RandomAccessibleInterval) - Method in class net.imagej.ops.topology.TopologyNamespace
EulerCorrection> - Class in net.imagej.ops.topology.eulerCharacteristic: An Op which calculates the correction needed to approximate the contribution of the image to the Euler characteristic χ of the whole image.
EulerCorrection() - Constructor for class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection
eulerCorrection(RandomAccessibleInterval) - Method in class net.imagej.ops.topology.TopologyNamespace
eulerCorrection(DoubleType, RandomAccessibleInterval) - Method in class net.imagej.ops.topology.TopologyNamespace
EulerCorrection.Traverser> - Class in net.imagej.ops.topology.eulerCharacteristic: A convenience class for passing parameters
Eval() - Constructor for class net.imagej.legacy.LegacyCommandline.Eval
eval(String) - Method in class net.imagej.legacy.plugin.IJ1MacroEngine
eval(Reader) - Method in class net.imagej.legacy.plugin.IJ1MacroEngine
eval(String) - Method in interface net.imagej.ops.OpEnvironment: Executes the "eval" operation on the given arguments.
eval(String, Map<String, Object>) - Method in interface net.imagej.ops.OpEnvironment: Executes the "eval" operation on the given arguments.
evaluate(double) - Method in class net.imagej.ops.features.zernike.helper.Polynom: return the value of the polynom in a given point.
exclude(String, String) - Static method in class net.imagej.updater.util.DependencyAnalyzer: Exclude some dependencies.
exclusiveOr(BezierPath, BezierPath) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions
executable(FileObject) - Method in class net.imagej.ui.swing.updater.FileDetails
executable - Variable in class net.imagej.updater.FileObject
execute(Operator, Object...) - Method in class net.imagej.ops.eval.OpEvaluator: Executes the given operation with the specified argument list.
execute(String, Object...) - Method in class net.imagej.ops.eval.OpEvaluator: Executes the given op with the specified argument list.
execute(Operator, Deque<Object>) - Method in class net.imagej.ops.eval.OpEvaluator
execute(long, long, long) - Method in interface net.imagej.ops.thread.chunker.Chunk: Solve the subproblem for the element at startIndex, increase the index by the given stepSize and repeat numSteps.
exists(File) - Method in class net.imagej.updater.Checksummer
exp(double) - Method in class net.imagej.ops.math.MathNamespace
exp(O, I) - Method in class net.imagej.ops.math.MathNamespace
Exp() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Exp
expand(double, double) - Method in class net.imagej.interval.CombinedRealInterval.MinMax
expandDims(Output<T>, Output) - Method in class net.imagej.tensorflow.GraphBuilder
expandDims(Output<T>, Output, String) - Method in class net.imagej.tensorflow.GraphBuilder
ExpDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign: Fills an output Dataset by exponentiating an input Dataset.
ExpDataValues() - Constructor for class net.imagej.plugins.commands.assign.ExpDataValues
expMinusOne(O, I) - Method in class net.imagej.ops.math.MathNamespace
ExpMinusOne() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.ExpMinusOne
exponent() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
exponent() - Method in interface net.imagej.omero.roi.ellipse.OMEROEllipse
ExponentialAxis - Class in net.imagej.axis: ExponentialAxis is a CalibratedAxis that scales raw values by the equation y = a + b * exp(c + d*x).
ExponentialAxis() - Constructor for class net.imagej.axis.ExponentialAxis
ExponentialAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.ExponentialAxis
ExponentialRecoveryAxis - Class in net.imagej.axis: ExponentialRecoveryAxis is a CalibratedAxis that scales raw values by the equation y = a + b * (1 - exp(c + d*x)).
ExponentialRecoveryAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.ExponentialRecoveryAxis
extend(RandomAccessibleInterval<T>, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Static method in class net.imagej.ops.special.chain.RAIs: Extends an input using an OutOfBoundsFactory, if available, otherwise returns the unchanged input.
extendBorderView(F) - Method in class net.imagej.ops.transform.TransformNamespace: Extend a RandomAccessibleInterval with an out-of-bounds strategy to repeat border pixels.
extendMirrorDoubleView(F) - Method in class net.imagej.ops.transform.TransformNamespace: Extend a RandomAccessibleInterval with a mirroring out-of-bounds strategy.
extendMirrorSingleView(F) - Method in class net.imagej.ops.transform.TransformNamespace: Extend a RandomAccessibleInterval with a mirroring out-of-bounds strategy.
extendPeriodicView(F) - Method in class net.imagej.ops.transform.TransformNamespace: Extend a RandomAccessibleInterval with a periodic out-of-bounds strategy.
extendRandomView(F, double, double) - Method in class net.imagej.ops.transform.TransformNamespace: Extend a RandomAccessibleInterval with a random-value out-of-bounds strategy.
extendValueView(F, T) - Method in class net.imagej.ops.transform.TransformNamespace: Extend a RandomAccessibleInterval with a constant-value out-of-bounds strategy.
extendView(F, OutOfBoundsFactory<T, ? super F>) - Method in class net.imagej.ops.transform.TransformNamespace: Extend a RandomAccessibleInterval with an out-of-bounds strategy.
extendZeroView(F) - Method in class net.imagej.ops.transform.TransformNamespace: Extend a RandomAccessibleInterval with a constant-value out-of-bounds strategy where the constant value is the zero-element of the data type.
extensions - Static variable in class net.imagej.updater.Checksummer
Extents - Class in net.imagej: This class wraps a pair of min and max dimensions encoded as long[]'s.
Extents(long[]) - Constructor for class net.imagej.Extents: Constructor that takes a dimensional extent and sets min to a zero origin and each max dim i to dims[i]-1.
Extents(long[], long[]) - Constructor for class net.imagej.Extents: Constructor that takes min and max extents.
extractHoles(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
extractHoles(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace
extractHoles(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
extractHoles(RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace

F

Facet - Interface in net.imagej.ops.geom.geom3d.mesh
FACET_BYTES - Static variable in class net.imagej.mesh.io.stl.STLMeshIO
FACET_START - Static variable in class net.imagej.mesh.io.stl.STLMeshIO
factor - Variable in class net.imagej.ops.convert.scale.ScaleRealTypes
factorAdjust(double, double, int, double) - Static method in class net.imagej.plugins.commands.display.SpectralComposite
factory() - Method in interface net.imagej.Dataset
factory() - Method in class net.imagej.DefaultDataset
factory() - Method in class net.imagej.ImgPlus
factory() - Method in class net.imagej.table.ResultsImg
fatalError(SAXParseException) - Method in class net.imagej.updater.XMLFileErrorHandler
feretsAngle(Pair<RealLocalizable, RealLocalizable>) - Method in class net.imagej.ops.geom.GeomNamespace
feretsAngle(DoubleType, Pair<RealLocalizable, RealLocalizable>) - Method in class net.imagej.ops.geom.GeomNamespace
feretsDiameter(Polygon2D, double) - Method in class net.imagej.ops.geom.GeomNamespace
feretsDiameter(DoubleType, Polygon2D, double) - Method in class net.imagej.ops.geom.GeomNamespace
feretsDiameter(Pair<RealLocalizable, RealLocalizable>) - Method in class net.imagej.ops.geom.GeomNamespace
feretsDiameter(DoubleType, Pair<RealLocalizable, RealLocalizable>) - Method in class net.imagej.ops.geom.GeomNamespace
fft(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "fft" operation on the given arguments.
fft(RandomAccessibleInterval<T>, long...) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "fft" operation on the given arguments.
fft(RandomAccessibleInterval<T>, long[], boolean) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "fft" operation on the given arguments.
fft(RandomAccessibleInterval<T>, long[], boolean, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "fft" operation on the given arguments.
fft(RandomAccessibleInterval<T>, long[], boolean, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, C) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "fft" operation on the given arguments.
fft(RandomAccessibleInterval<C>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "fft" operation on the given arguments.
FFTMethodsLinearFFTFilterC,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>> - Class in net.imagej.ops.filter: Convolve op for (@link RandomAccessibleInterval)
FFTMethodsLinearFFTFilterC() - Constructor for class net.imagej.ops.filter.FFTMethodsLinearFFTFilterC
FFTMethodsOpC<T extends RealType<T>,C extends ComplexType<C>> - Class in net.imagej.ops.filter.fft: Forward FFT computer that operates on an RAI and wraps FFTMethods.
FFTMethodsOpC() - Constructor for class net.imagej.ops.filter.fft.FFTMethodsOpC
FFTMethodsOpF<T extends RealType<T>,C extends ComplexType<C>> - Class in net.imagej.ops.filter.fft: Function that uses FFTMethods to perform a forward FFT
FFTMethodsOpF() - Constructor for class net.imagej.ops.filter.fft.FFTMethodsOpF
FFTMethodsUtility - Class in net.imagej.ops.filter.fft: Utility class that interacts with FFTMethods
FFTMethodsUtility() - Constructor for class net.imagej.ops.filter.fft.FFTMethodsUtility
fftSize(Dimensions, boolean, boolean) - Method in class net.imagej.ops.filter.FilterNamespace
fftSize(Dimensions, boolean) - Method in class net.imagej.ops.filter.FilterNamespace
FgColorTool - Class in net.imagej.plugins.tools: The tool that displays the current foreground color.
FgColorTool() - Constructor for class net.imagej.plugins.tools.FgColorTool
Field(int) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer.Field
FigureCreatedEvent - Class in net.imagej.ui.swing.overlay: An event that reports the creation of a JHotDraw Figure, linked to an ImageJ OverlayView in a particular ImageDisplay.
FigureCreatedEvent(OverlayView, Figure, ImageDisplay) - Constructor for class net.imagej.ui.swing.overlay.FigureCreatedEvent
FigureView - Interface in net.imagej.ui.swing.viewer.image: A figure view renders a DataView with a linked JHotDraw Figure.
file - Variable in class net.imagej.updater.UploadableFile
FileDetails - Class in net.imagej.ui.swing.updater: TODO
FileDetails(UpdaterFrame) - Constructor for class net.imagej.ui.swing.updater.FileDetails
fileDetails - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
fileExists(String) - Method in class net.imagej.updater.FilesCollection
FileFilter(List<String>) - Constructor for class net.imagej.updater.CommandLine.FileFilter
Filename() - Constructor for class net.imagej.legacy.LegacyCommandline.Filename
filename - Variable in class net.imagej.ui.swing.updater.DiffFile
filename - Variable in class net.imagej.updater.Conflicts.Conflict
filename - Variable in class net.imagej.updater.Dependency
filename - Variable in class net.imagej.updater.FileObject
filename - Variable in class net.imagej.updater.FileObject.Version
filename - Variable in class net.imagej.updater.UploadableFile
fileNames - Variable in class net.imagej.updater.CommandLine.FileFilter
FileObject - Class in net.imagej.updater: This class represents a file handled by the updater.
FileObject(String, String, long, String, long, FileObject.Status) - Constructor for class net.imagej.updater.FileObject
FileObject.Action - Enum in net.imagej.updater
FileObject.Status - Enum in net.imagej.updater
FileObject.Version - Class in net.imagej.updater
files - Variable in class net.imagej.patcher.HeadlessGenericDialog
files - Variable in class net.imagej.ui.swing.updater.FileTable
files - Variable in class net.imagej.ui.swing.updater.SitesDialog
files - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
files - Variable in class net.imagej.updater.CommandLine
filesChanged() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
FilesCollection - Class in net.imagej.updater: This class represents the database of available FileObjects.
FilesCollection(File) - Constructor for class net.imagej.updater.FilesCollection: This constructor takes the imagejRoot primarily for testing purposes.
FilesCollection(LogService, File) - Constructor for class net.imagej.updater.FilesCollection: This constructor takes the imagejRoot primarily for testing purposes.
FilesCollection.DependencyMap - Class in net.imagej.updater
FilesCollection.Filter - Interface in net.imagej.updater
FilesCollection.FilteredIterator - Class in net.imagej.updater
filesize - Variable in class net.imagej.updater.FileObject
filesize - Variable in class net.imagej.updater.UploadableFile
fileSummary - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
FilesUploader - Class in net.imagej.updater: This class is responsible for writing updates to server, upon given the updated file records.
FilesUploader(FilesCollection, String) - Constructor for class net.imagej.updater.FilesUploader: Deprecated.
use FilesUploader(UploaderService, FilesCollection, String, Progress) instead
FilesUploader(UploaderService, FilesCollection, String) - Constructor for class net.imagej.updater.FilesUploader: Deprecated.
use FilesUploader(UploaderService, FilesCollection, String, Progress) instead
FilesUploader(UploaderService, FilesCollection, String, Progress) - Constructor for class net.imagej.updater.FilesUploader
FilesUploader.DbXmlFile - Class in net.imagej.updater
FilesUploader.VerifyTimestamp - Class in net.imagej.updater
FileTable - Class in net.imagej.ui.swing.updater: This class's role is to be in charge of how the Table should be displayed.
FileTable(UpdaterFrame) - Constructor for class net.imagej.ui.swing.updater.FileTable
FileTable.FileTableModel - Class in net.imagej.ui.swing.updater
FileTableModel(FilesCollection) - Constructor for class net.imagej.ui.swing.updater.FileTable.FileTableModel
fileToRow - Variable in class net.imagej.ui.swing.updater.FileTable.FileTableModel
FileUploader - Class in net.imagej.updater: This FileUploader is highly specialized to upload files and XML information over to ImageJ2 Update sites.
FileUploader() - Constructor for class net.imagej.updater.FileUploader
fill() - Method in class net.imagej.DrawingTool: Fills the current UV plane.
fill(Iterable<T>, T) - Method in class net.imagej.ops.image.ImageNamespace: Executes the "fill" operation on the given arguments.
fill4(long, long, long[]) - Method in class net.imagej.FloodFiller: Does a 4-connected flood fill using the current fill/draw value.
fill8(long, long, long[]) - Method in class net.imagej.FloodFiller: Does an 8-connected flood fill using the current fill/draw value.
fillCircle(long, long) - Method in class net.imagej.DrawingTool: Draws a filled circle in the current UV plane centered at the specified UV coordinates.
FillDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign: Fills the selected region of an input Dataset with the foreground values.
FillDataValues() - Constructor for class net.imagej.plugins.commands.assign.FillDataValues
FillHoles<T extends BooleanType<T>> - Class in net.imagej.ops.commands.morphology: This command applies the Fill Holes operation to a binary input image.
FillHoles() - Constructor for class net.imagej.ops.commands.morphology.FillHoles
fillHoles(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
fillHoles(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
fillHoles(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace
fillMaskBackground() - Method in class net.imagej.plugins.commands.binary.Binarize: Gets whether to fill background pixels of binary mask or not.
fillMaskForeground() - Method in class net.imagej.plugins.commands.binary.Binarize: Gets whether to fill foreground pixels of binary mask or not.
fillMetadataFromJar(FileObject, File) - Static method in class net.imagej.updater.POMParser
fillOverlay(Overlay, ImageDisplay, ChannelCollection) - Method in class net.imagej.display.DefaultOverlayService
fillOverlay(Overlay, Dataset, Position, ChannelCollection) - Method in class net.imagej.display.DefaultOverlayService
fillOverlay(Overlay, ImageDisplay, ChannelCollection) - Method in interface net.imagej.display.OverlayService: Draws and fills the outline of a given overlay in a display using the set of channel information provided.
fillOverlay(Overlay, Dataset, Position, ChannelCollection) - Method in interface net.imagej.display.OverlayService: Draws and fills the outline of a given overlay in a dataset using the set of channel information provided.
fillRect(long, long, long, long) - Method in class net.imagej.DrawingTool: Draws a filled rectangle in the current UV plane.
filter() - Method in interface net.imagej.ops.OpEnvironment: Gateway into ops of the "filter" namespace.
filter(FilesCollection.Filter, Iterable<FileObject>) - Static method in class net.imagej.updater.FilesCollection
filter(String, Iterable<FileObject>) - Static method in class net.imagej.updater.FilesCollection
filter(FilesCollection.Filter) - Method in class net.imagej.updater.FilesCollection
filter(InputStream, boolean) - Static method in class net.imagej.updater.util.FilterManifest
filter(BufferedReader, boolean) - Static method in class net.imagej.updater.util.FilterManifest
filterArity(List<OpCandidate>, int) - Static method in interface net.imagej.ops.special.SpecialOp: Extracts a sublist of op candidates with a particular arity.
FilterManifest - Class in net.imagej.updater.util: A helper class for the Checksummer.
FilterManifest(InputStream) - Constructor for class net.imagej.updater.util.FilterManifest
FilterManifest(InputStream, boolean) - Constructor for class net.imagej.updater.util.FilterManifest
FilterManifest.Skip - Enum in net.imagej.updater.util
filterMatches(List<OpCandidate>) - Method in class net.imagej.ops.DefaultOpMatchingService
filterMatches(List<OpCandidate>) - Method in interface net.imagej.ops.OpMatchingService: Filters a list of ops to those matching the given arguments.
FilterNamespace - Class in net.imagej.ops.filter: The filter namespace contains ops that filter data.
FilterNamespace() - Constructor for class net.imagej.ops.filter.FilterNamespace
finalizeRecording() - Method in class net.imagej.patcher.HeadlessGenericDialog
find(String) - Method in class net.imagej.server.services.DefaultObjectService
find(String) - Method in interface net.imagej.server.services.ObjectService: Retrieves the Object with the given ID.
findCandidates(OpEnvironment, OpRef) - Method in class net.imagej.ops.DefaultOpMatchingService
findCandidates(OpEnvironment, List<OpRef>) - Method in class net.imagej.ops.DefaultOpMatchingService
findCandidates(OpEnvironment, OpRef) - Method in interface net.imagej.ops.OpMatchingService: Builds a list of candidate ops which might match the given op reference.
findCandidates(OpEnvironment, List<OpRef>) - Method in interface net.imagej.ops.OpMatchingService: Builds a list of candidate ops which might match one of the given op references.
findCastLevels(Class<?>, Class<?>) - Static method in class net.imagej.ops.OpMatchingUtil: Finds the levels of casting between origin and dest.
findClass(String) - Method in class imagej.patcher.LegacyClassLoader: Deprecated.
findClass(String) - Method in class net.imagej.patcher.LegacyClassLoader
findCommands() - Method in class net.imagej.legacy.command.LegacyCommandFinder
FindEdges - Class in net.imagej.plugins.commands.neigh: Runs the Find Edges plugin
FindEdges() - Constructor for class net.imagej.plugins.commands.neigh.FindEdges
findIndex(OverlayInfo) - Method in class net.imagej.display.OverlayInfoList
findIndex(Overlay) - Method in class net.imagej.display.OverlayInfoList
findLUTs() - Method in class net.imagej.lut.DefaultLUTService
findLUTs() - Method in class net.imagej.lut.LUTFinder: Deprecated.
Use LUTService.findLUTs() instead.
findLUTs() - Method in interface net.imagej.lut.LUTService: Finds the URLs of the LUT files known to ImageJ.
findMatch(OpEnvironment, OpRef) - Method in class net.imagej.ops.DefaultOpMatchingService
findMatch(OpEnvironment, List<OpRef>) - Method in class net.imagej.ops.DefaultOpMatchingService
findMatch(OpEnvironment, OpRef) - Method in interface net.imagej.ops.OpMatchingService: Finds and initializes the best module matching the given op name and/or type + arguments.
findMatch(OpEnvironment, List<OpRef>) - Method in interface net.imagej.ops.OpMatchingService: Finds and initializes the best module matching any of the given op name and/or type + arguments.
findModule(ModuleService, String) - Static method in class net.imagej.omero.ModuleUtils: Looks up an Identifiable ImageJ module by its identifier.
findNext() - Method in class net.imagej.updater.FilesCollection.FilteredIterator
findPatternSwitches(boolean[]) - Method in class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning: Returns the amount of switches from foreground to background occurring in the circle around vals[1]
findResources(String, String) - Static method in class net.imagej.util.AppUtils: Finds URLs of resources known to ImageJ.
findResources(String, Iterable<URL>) - Static method in class net.imagej.util.AppUtils: Finds URLs of resources known to ImageJ.
finishCreation(BezierFigure, DrawingView) - Method in class net.imagej.ui.swing.overlay.IJBezierTool
finishRecording() - Method in class net.imagej.legacy.IJ1Helper: Completes recording of a command.
FIRE - Static variable in class net.imagej.display.ColorTables
fireFileChanged(FileObject) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
fireFileChanged(FileObject) - Method in class net.imagej.ui.swing.updater.FileTable
fireRowChanged(int) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
first() - Method in class net.imagej.Position: Sets the Position to its first state (all dimension positions to min values).
firstElement() - Method in class net.imagej.DefaultDataset
firstElement() - Method in class net.imagej.ImgPlus
firstElement() - Method in class net.imagej.ops.slice.SlicesII
firstElement() - Method in class net.imagej.table.ResultsImg
firstGuess(RandomAccessibleInterval, O, Dimensions) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
fixDisabledAlgorithms() - Static method in class net.imagej.omero.SSLUtils: Deprecated.
fixImageJUserSiteProtocol(String) - Static method in class net.imagej.updater.util.HTTPSUtil: This method returns ImageJ user site URLs in the correct protocol (HTTPS or HTTPS), depending on what's supported.
flatIterableView(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.TransformNamespace: Return an IterableInterval having FlatIterationOrder.
Flatten - Class in net.imagej.plugins.commands.display: Captures the current view of an ImageDisplay to a color merged Dataset.
Flatten() - Constructor for class net.imagej.plugins.commands.display.Flatten
FlipAxis - Class in net.imagej.plugins.commands.restructure: Flips the planes of a Dataset along a user specified axis.
FlipAxis() - Constructor for class net.imagej.plugins.commands.restructure.FlipAxis
FlipHorizontally - Class in net.imagej.plugins.commands.rotate: Modifies an input Dataset by flipping its pixels horizontally.
FlipHorizontally() - Constructor for class net.imagej.plugins.commands.rotate.FlipHorizontally
FlipVertically - Class in net.imagej.plugins.commands.rotate: Modifies an input Dataset by flipping its pixels vertically.
FlipVertically() - Constructor for class net.imagej.plugins.commands.rotate.FlipVertically
Float32() - Constructor for class net.imagej.ops.convert.ConvertImages.Float32
float32(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
float32(Img<FloatType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
float32(C) - Method in class net.imagej.ops.convert.ConvertNamespace
float32(FloatType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
float32(long) - Static method in class net.imagej.ops.convert.Types
float32(double) - Static method in class net.imagej.ops.convert.Types
float32(BigInteger) - Static method in class net.imagej.ops.convert.Types
float32(boolean) - Static method in class net.imagej.ops.convert.Types
Float64() - Constructor for class net.imagej.ops.convert.ConvertImages.Float64
float64(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
float64(Img<DoubleType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
float64(C) - Method in class net.imagej.ops.convert.ConvertNamespace
float64(DoubleType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
float64(long) - Static method in class net.imagej.ops.convert.Types
float64(double) - Static method in class net.imagej.ops.convert.Types
float64(BigInteger) - Static method in class net.imagej.ops.convert.Types
float64(boolean) - Static method in class net.imagej.ops.convert.Types
FloatAbs() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatAbs
FloatAdd() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatAdd
FloatDivide() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatDivide
FloatEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.FloatEqual
FloatGreaterThan() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.FloatGreaterThan
FloatGreaterThanOrEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.FloatGreaterThanOrEqual
FloatLessThan() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.FloatLessThan
FloatLessThanOrEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.FloatLessThanOrEqual
FloatMax() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatMax
FloatMin() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatMin
FloatMultiply() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatMultiply
FloatNegate() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatNegate
FloatNotEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.FloatNotEqual
FloatRemainder() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatRemainder
FloatRound() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatRound
FloatSignum() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatSignum
FloatSubtract() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatSubtract
FloatTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.FloatTableToResultsTable
FloatToFloatTypeConverter() - Constructor for class net.imagej.server.converter.NumberToNumericTypeConverters.FloatToFloatTypeConverter
floodFill(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, Localizable, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace
floodFill(RandomAccessibleInterval<T>, Localizable, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace
FloodFiller - Class in net.imagej: This class, which does flood filling, is used by the FloodFillTool.
FloodFiller(DrawingTool) - Constructor for class net.imagej.FloodFiller: Constructs a FloodFiller from a given DrawingTool.
FloodFillTool - Class in net.imagej.plugins.tools: Tool implementation for flood fill.
FloodFillTool() - Constructor for class net.imagej.plugins.tools.FloodFillTool
FloodFillToolConfig - Class in net.imagej.plugins.tools: Implements the configuration code for FloodFillTool.
FloodFillToolConfig() - Constructor for class net.imagej.plugins.tools.FloodFillToolConfig
floor(double) - Method in class net.imagej.ops.math.MathNamespace
floor(O, I) - Method in class net.imagej.ops.math.MathNamespace
Floor() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Floor
focusGained(FocusEvent) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
focusGained(FocusEvent) - Method in class net.imagej.patcher.HeadlessGenericDialog
FocusHandler - Class in net.imagej.plugins.tools: Brings the main application window into focus when ENTER is pressed.
FocusHandler() - Constructor for class net.imagej.plugins.tools.FocusHandler
focusLost(FocusEvent) - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
focusLost(FocusEvent) - Method in class net.imagej.patcher.HeadlessGenericDialog
FocusSearchBar - Class in net.imagej.legacy.search: Command which focuses the ImageJ search bar.
FocusSearchBar() - Constructor for class net.imagej.legacy.search.FocusSearchBar
FONT - Static variable in class net.imagej.ui.swing.updater.DiffView
FONT_SIZE - Static variable in class net.imagej.ui.swing.updater.DiffView
format(String) - Static method in class net.imagej.updater.UpdateSite
forUpdateSite(String) - Method in class net.imagej.updater.FilesCollection
forUpdateSite(String, boolean) - Method in class net.imagej.updater.FilesCollection
forUpload - Variable in class net.imagej.ui.swing.updater.ResolveDependencies
FOUR - Static variable in class net.imagej.plugins.commands.binary.AbstractMorphOpsCommand
FrangiVesselness<T extends RealType<T>> - Class in net.imagej.ops.commands.filter: This command applied the Frangi Vesselness filter operation onto an image, allowing users to specify: 1) The scales desired for the filter application 2) The physical spacing between image data points 3) Whether or not the gaussian filter should be performed at each scale before the filter runs.
FrangiVesselness() - Constructor for class net.imagej.ops.commands.filter.FrangiVesselness
frangiVesselness(RandomAccessibleInterval, RandomAccessibleInterval<T>, double[], int) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "Frangi Vesselness" filter operation on the given arguments.
freeze(ClassLoader) - Static method in class net.imagej.launcher.ClassLoaderPlus
FromOverlayManager - Class in net.imagej.plugins.commands.overlay: After running this plugin the current display will now reference (and show) the overlays that are currently selected in the Overlay Manager.
FromOverlayManager() - Constructor for class net.imagej.plugins.commands.overlay.FromOverlayManager
frozen - Static variable in class net.imagej.launcher.ClassLoaderPlus
function(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
function(OpEnvironment, Class<? extends Op>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs
function(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
function(OpEnvironment, Class<? extends Op>, I, Object...) - Static method in class net.imagej.ops.special.chain.RTs
Functions - Class in net.imagej.ops.special.function: Utility class for looking up function ops in a type-safe way.
fwd(int) - Method in class net.imagej.display.AbstractDataView
fwd(int) - Method in class net.imagej.display.DefaultImageDisplay
fwd(int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
fwd() - Method in class net.imagej.ops.image.integral.IntegralCursor
fwd() - Method in class net.imagej.Position: Moves the Position forward by one step.
fwd(int) - Method in class net.imagej.Position: Moves the Position forward one step in specified dimension.

G

gamma(O, I, double) - Method in class net.imagej.ops.math.MathNamespace
GammaConstant() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.GammaConstant
GammaDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign: Fills an output Dataset with the result of applying the gamma function to an input Dataset.
GammaDataValues() - Constructor for class net.imagej.plugins.commands.assign.GammaDataValues
GammaVariateAxis - Class in net.imagej.axis: GammaVariateAxis is a CalibratedAxis that scales raw values by the equation y = a * (x-b)^c*exp(-(x-b)/d).
GammaVariateAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.GammaVariateAxis
gauss(RandomAccessibleInterval<V>, RandomAccessibleInterval<T>, double[], OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "gauss" operation on the given arguments.
gauss(RandomAccessibleInterval<V>, RandomAccessibleInterval<T>, double...) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "gauss" operation on the given arguments.
gauss(RandomAccessibleInterval<T>, double...) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "gauss" operation on the given arguments.
gauss(RandomAccessibleInterval<V>, RandomAccessibleInterval<T>, double) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "gauss" operation on the given arguments.
gauss(RandomAccessibleInterval<V>, RandomAccessibleInterval<T>, double, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "gauss" operation on the given arguments.
gauss(RandomAccessibleInterval<T>, double) - Method in class net.imagej.ops.filter.FilterNamespace
gauss(RandomAccessibleInterval<V>, RandomAccessible<T>, double...) - Method in class net.imagej.ops.filter.FilterNamespace: Executes the "gauss" operation on the given arguments.
GaussianAxis - Class in net.imagej.axis: GaussianAxis is a CalibratedAxis that scales raw values by the equation y = a + (b-a)*exp(-(x-c)*(x-c)/(2*d*d)).
GaussianAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.GaussianAxis
GaussianBlur<T extends RealType<T>> - Class in net.imagej.plugins.commands.imglib: Does an in place Gaussian blur noise reduction operation on a Dataset .
GaussianBlur() - Constructor for class net.imagej.plugins.commands.imglib.GaussianBlur
GaussRAISingleSigma<T extends NumericType<T> & NativeType<T>> - Class in net.imagej.ops.filter.gauss: Gaussian filter which can be called with single sigma, i.e.
GaussRAISingleSigma() - Constructor for class net.imagej.ops.filter.gauss.GaussRAISingleSigma
gc() - Static method in class net.imagej.patcher.MemoryProfiler
generalEquation() - Method in interface net.imagej.axis.CalibratedAxis: Gets the general equation representing values along this axis; for instance: y = m*x + b.
generalEquation() - Method in class net.imagej.axis.ChapmanRichardsAxis
generalEquation() - Method in class net.imagej.axis.DefaultLinearAxis
generalEquation() - Method in class net.imagej.axis.EnumeratedAxis
generalEquation() - Method in class net.imagej.axis.ExponentialAxis
generalEquation() - Method in class net.imagej.axis.ExponentialRecoveryAxis
generalEquation() - Method in class net.imagej.axis.GammaVariateAxis
generalEquation() - Method in class net.imagej.axis.GaussianAxis
generalEquation() - Method in class net.imagej.axis.IdentityAxis
generalEquation() - Method in class net.imagej.axis.InverseRodbardAxis
generalEquation() - Method in class net.imagej.axis.LogLinearAxis
generalEquation() - Method in class net.imagej.axis.PolynomialAxis
generalEquation() - Method in class net.imagej.axis.PowerAxis
generalEquation() - Method in class net.imagej.axis.RodbardAxis
GeneralPathFigure - Class in net.imagej.ui.swing.overlay: A composite figure, made up of possibly-overlapping BezierFigures.
GeneralPathFigure(BezierFigure...) - Constructor for class net.imagej.ui.swing.overlay.GeneralPathFigure
GeneralPathJHotDrawAdapter - Class in net.imagej.ui.swing.overlay: JHotDraw adapter for composite area selections.
GeneralPathJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter
GeneralPathOverlay - Class in net.imagej.overlay: An overlay for the GeneralPathRegionOfInterest.
GeneralPathOverlay(Context) - Constructor for class net.imagej.overlay.GeneralPathOverlay
generateAll(File) - Method in class net.imagej.omero.ScriptGenerator: Generates OMERO script stubs for all available ImageJ modules.
GenericTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.GenericTableToResultsTable
geom() - Method in interface net.imagej.ops.OpEnvironment: Gateway into ops of the "geom" namespace.
geometricMean(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
geometricMean(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
GeometricOp<I,O> - Interface in net.imagej.ops.geom: Simple marker interface for Geoemtric ops.
GeomNamespace - Class in net.imagej.ops.geom: Namespace for Geom.
GeomNamespace() - Constructor for class net.imagej.ops.geom.GeomNamespace
GeomUtils - Class in net.imagej.ops.geom: Utility class for Ops in the GeomNamespace.
get(String) - Static method in class net.imagej.axis.Axes: Accessor for an AxisType of the given label.
get(String, boolean) - Static method in class net.imagej.axis.Axes: Accessor for an AxisType of the given label.
get(String) - Method in class net.imagej.axis.VariableAxis: Gets the value of the variable with the given name, or null if none.
get(String) - Static method in enum net.imagej.display.ColorMode
get(URLClassLoader, File...) - Static method in class net.imagej.launcher.ClassLoaderPlus
get(URLClassLoader, URL...) - Static method in class net.imagej.launcher.ClassLoaderPlus
get(int) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
get(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
get(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
get(String, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
get(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
get(int) - Method in class net.imagej.legacy.convert.TableListWrapper
get(String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
get(String, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
get(Class<?>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
get(Class<?>, String, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
get(int) - Method in class net.imagej.omero.LazyTableList
get(int) - Method in class net.imagej.omero.legacy.LazyOverlay
get() - Method in class net.imagej.ops.image.integral.IntegralCursor
get() - Static method in class net.imagej.patcher.MemoryProfiler
get() - Static method in class net.imagej.tensorflow.ui.AvailableTensorFlowVersions
get() - Method in class net.imagej.types.PreciseFixedFloatType
get() - Method in class net.imagej.types.UnboundedIntegerType
get(int) - Method in class net.imagej.updater.FilesCollection: Deprecated.
get(Object) - Method in class net.imagej.updater.FilesCollection
get(URL) - Method in class net.imagej.updater.util.DropboxURLMapper
get() - Static method in class net.imagej.updater.util.UpdaterUserInterface
get2DPoint(RandomAccess<DoubleType>) - Static method in class net.imagej.ops.segment.detectRidges.RidgeDetectionUtils: Helper method to take a point in a n-d image and reduce it down to a 2 dimensional point (e.g.
get2DRealPoint(RandomAccess<DoubleType>) - Static method in class net.imagej.ops.segment.detectRidges.RidgeDetectionUtils: Helper method to take a point in a n-d image and reduce it down to a 2 dimensional Realpoint (e.g.
get2DRealPoint(double, double) - Static method in class net.imagej.ops.segment.detectRidges.RidgeDetectionUtils: Returns a RealPoint with the coordinates (x, y).
getAccelerator() - Method in class net.imagej.ops.filter.AbstractIterativeFFTFilterC
getAction() - Method in class net.imagej.updater.FileObject
getActions() - Method in enum net.imagej.updater.FileObject.Status: Deprecated.
getActions(FileObject) - Method in class net.imagej.updater.FilesCollection: Deprecated.
getActions(Iterable<FileObject>) - Method in class net.imagej.updater.FilesCollection: Deprecated.
getActionStyle(ActionListener) - Static method in class net.imagej.ui.swing.updater.DiffView: Generate an attribute set for links.
getActiveAxis() - Method in class net.imagej.display.DefaultImageDisplay
getActiveAxis() - Method in interface net.imagej.display.ImageDisplay: Gets the axis currently designated as active.
getActiveDataset() - Method in class net.imagej.display.DefaultImageDisplayService
getActiveDataset(ImageDisplay) - Method in class net.imagej.display.DefaultImageDisplayService
getActiveDataset() - Method in interface net.imagej.display.ImageDisplayService: Gets the active Dataset, if any, of the currently active ImageDisplay.
getActiveDataset(ImageDisplay) - Method in interface net.imagej.display.ImageDisplayService: Gets the active Dataset, if any, of the given ImageDisplay.
getActiveDataset() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
getActiveDataset(ImageDisplay) - Method in class net.imagej.legacy.display.LegacyImageDisplayService
getActiveDatasetView() - Method in class net.imagej.display.DefaultImageDisplayService
getActiveDatasetView(ImageDisplay) - Method in class net.imagej.display.DefaultImageDisplayService
getActiveDatasetView() - Method in interface net.imagej.display.ImageDisplayService: Gets the active DatasetView, if any, of the currently active ImageDisplay.
getActiveDatasetView(ImageDisplay) - Method in interface net.imagej.display.ImageDisplayService: Gets the active DatasetView, if any, of the given ImageDisplay.
getActiveDatasetView() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
getActiveDatasetView(ImageDisplay) - Method in class net.imagej.legacy.display.LegacyImageDisplayService
getActiveImageDisplay() - Method in class net.imagej.display.DefaultImageDisplayService
getActiveImageDisplay() - Method in interface net.imagej.display.ImageDisplayService: Gets the currently active ImageDisplay.
getActiveImageDisplay() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
getActiveModule() - Static method in class net.imagej.legacy.Macros
getActiveOverlay(ImageDisplay) - Method in class net.imagej.display.DefaultOverlayService
getActiveOverlay(ImageDisplay) - Method in interface net.imagej.display.OverlayService: Returns the active overlay associated with a display
getActivePosition() - Method in class net.imagej.display.DefaultImageDisplayService
getActivePosition(ImageDisplay) - Method in class net.imagej.display.DefaultImageDisplayService
getActivePosition() - Method in interface net.imagej.display.ImageDisplayService: Gets the active Position, if any, of the currently active ImageDisplay.
getActivePosition(ImageDisplay) - Method in interface net.imagej.display.ImageDisplayService: Gets the active Position, if any, of the active DatasetView in the given ImageDisplay.
getActivePosition() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
getActivePosition(ImageDisplay) - Method in class net.imagej.legacy.display.LegacyImageDisplayService
getActiveView() - Method in class net.imagej.display.DefaultImageDisplay
getActiveView() - Method in interface net.imagej.display.ImageDisplay: Gets the view currently designated as active.
getAdapter() - Method in class net.imagej.ui.swing.overlay.IJBezierTool
getAdapter() - Method in class net.imagej.ui.swing.overlay.IJCreationTool
getAdapter() - Method in class net.imagej.ui.swing.overlay.IJDelegationSelectionTool
getAdapter(Tool) - Method in class net.imagej.ui.swing.overlay.JHotDrawService: Gets the adapter associated with the given tool.
getAdapter(Overlay) - Method in class net.imagej.ui.swing.overlay.JHotDrawService: Gets the first available adapter for the given overlay.
getAdapter(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.JHotDrawService: Gets the first available adapter for the given overlay.
getAdapter() - Method in interface net.imagej.ui.swing.overlay.JHotDrawTool: Gets the JHotDrawAdapter associated with this JHotDraw tool.
getAdapters(Overlay) - Method in class net.imagej.ui.swing.overlay.JHotDrawService: Gets all adapters capable of handling a given overlay.
getAdapters(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.JHotDrawService: Gets all adapters capable of handling a given overlay/figure combination.
getAdditionalMacroFunctions() - Static method in class net.imagej.legacy.IJ1Helper: Gets the result of Interpreter.getAdditionalFunctions().
getAdds() - Method in class net.imagej.ui.swing.updater.DiffView: Get the number of added lines.
getAliases() - Method in class net.imagej.ops.OpInfo: Gets the fully qualified aliases.
getAllAdapters() - Method in class net.imagej.ui.swing.overlay.JHotDrawService: Gets all of the discovered adapters.
getAllAttributes() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
getAllFields() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
getAllFiles() - Method in class net.imagej.ui.swing.updater.FileTable
getAllInterfaces() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
getAllMethods() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
getAlpha() - Method in class net.imagej.options.OptionsOverlay
getAlpha() - Method in class net.imagej.overlay.AbstractOverlay
getAlpha() - Method in interface net.imagej.overlay.Overlay
getAlpha() - Method in class net.imagej.overlay.OverlaySettings
getAlpha() - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionAlphaTrimmedMean
getAlpha() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
getAlpha() - Method in class net.imagej.plugins.commands.overlay.ConvertToMask
getAngle(double, double) - Static method in class net.imagej.ops.segment.detectRidges.RidgeDetectionUtils: Returns the angle between the x-axis and a given vector (in components).
getAngle() - Method in class net.imagej.plugins.commands.imglib.RotateImageXY: Gets the angle of counterclockwise rotation to apply.
getAnimation(ImageDisplay) - Method in interface net.imagej.animation.AnimationService: Gets the given ImageDisplay's corresponding Animation.
getAnimation(ImageDisplay) - Method in class net.imagej.animation.DefaultAnimationService
getAnimationService() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
getAntialiasing() - Method in class net.imagej.render.DummyTextRenderer
getAntialiasing() - Method in interface net.imagej.render.TextRenderer
getAntialiasing() - Method in class net.imagej.ui.awt.AWTTextRenderer
getApp() - Method in class net.imagej.legacy.LegacyService
getApplicationFrame() - Method in class net.imagej.legacy.ui.LegacyUI
getAppName() - Method in class imagej.patcher.LegacyHooks: Deprecated.

Returns the name to use in place of "ImageJ".
getAppName() - Method in class net.imagej.legacy.DefaultLegacyHooks: Returns the application name for use with ImageJ 1.x.
getAppName() - Method in interface net.imagej.legacy.plugin.LegacyAppConfiguration: Returns the application name for use with ImageJ 1.x.
getAppName() - Method in class net.imagej.patcher.LegacyHooks: Returns the name to use in place of "ImageJ".
getAppVersion() - Method in class net.imagej.legacy.DefaultLegacyHooks: Returns the application version to display in the ImageJ 1.x status bar.
getAppVersion() - Method in class net.imagej.patcher.LegacyHooks: Returns the version to use in place of the legacy version.
getArea() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet: Get the area of this facet.
getArg() - Method in class net.imagej.legacy.command.LegacyCommandInfo: Gets the arg portion of the legacy command, if any.
getArgs() - Method in class net.imagej.ops.OpCandidate
getArgs() - Method in class net.imagej.ops.OpRef: Gets the op's arguments.
getArity() - Method in interface net.imagej.ops.special.BinaryOp
getArity() - Method in interface net.imagej.ops.special.NullaryOp
getArity() - Method in interface net.imagej.ops.special.SpecialOp: Gets the op's number of special input parameters.
getArity() - Method in interface net.imagej.ops.special.UnaryOp
getArray(Dataset) - Method in class net.imagej.matlab.DefaultImageJMATLABService
getArray(Dataset) - Method in interface net.imagej.matlab.ImageJMATLABService: Converts a Dataset to a MatlabNumericArray which can then be safely passed to MATLAB.
getArrowColor() - Method in class net.imagej.options.OptionsArrowTool
getArrowSize() - Method in class net.imagej.options.OptionsArrowTool
getArrowStyle() - Method in class net.imagej.options.OptionsArrowTool
getArrowWidth() - Method in class net.imagej.options.OptionsArrowTool
getArtifactId() - Method in class net.imagej.app.ImageJApp
getArtifactId() - Method in class net.imagej.app.ToplevelImageJApp
getArtifactId() - Method in class net.imagej.legacy.LegacyImageJApp
getAttribute(NodeList, String) - Static method in class net.imagej.util.MediaWikiClient
getAttributes() - Method in class net.imagej.updater.util.ByteCodeAnalyzer.Attribute
getAttributes(int) - Method in class net.imagej.updater.util.ByteCodeAnalyzer
getAuthors() - Method in class net.imagej.updater.FileObject
getAutoscaleMethod(String) - Method in interface net.imagej.autoscale.AutoscaleService: Returns the AutoscaleMethod associated with the given name.
getAutoscaleMethod(String) - Method in class net.imagej.autoscale.DefaultAutoscaleService
getAutoscaleMethodNames() - Method in interface net.imagej.autoscale.AutoscaleService: Returns the names of all available AutoscaleMethods, ordered by priority.
getAutoscaleMethodNames() - Method in class net.imagej.autoscale.DefaultAutoscaleService
getAutoscaleMethods() - Method in interface net.imagej.autoscale.AutoscaleService: Returns a map of available AutoscaleMethods, indexed by name.
getAutoscaleMethods() - Method in class net.imagej.autoscale.DefaultAutoscaleService
getAvailableSites() - Static method in class net.imagej.updater.util.AvailableSites
getAvailableSites(Logger) - Static method in class net.imagej.updater.util.AvailableSites
getAxesIndices(TypedSpace<?>, AxisType[]) - Static method in class net.imagej.ops.slice.SliceUtils
getAxis() - Method in class net.imagej.animation.Animation: Gets the axis over which to animate.
getAxis() - Method in class net.imagej.display.event.AxisEvent
getAxis() - Method in class net.imagej.display.event.DelayedPositionEvent
getAxis() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
getAxis() - Method in class net.imagej.plugins.commands.axispos.SetActiveAxis
getAxis() - Method in class net.imagej.plugins.commands.restructure.AddAxis
getAxis() - Method in class net.imagej.plugins.commands.restructure.AddData
getAxis() - Method in class net.imagej.plugins.commands.restructure.DeleteAxis
getAxis() - Method in class net.imagej.plugins.commands.restructure.FlipAxis
getAxis() - Method in class net.imagej.plugins.commands.restructure.ReorderAxis: Gets the type of the axis to be changed.
getAxisName() - Method in class net.imagej.plugins.commands.restructure.DeleteData
getAxisSize() - Method in class net.imagej.plugins.commands.restructure.AddAxis
getAxisType(int) - Method in class net.imagej.plugins.commands.restructure.EditAxes
getAxisTypes(TypedSpace<A>) - Static method in class net.imagej.space.SpaceUtils: Gets an array of AxisType's delineating the types of the axes of a TypedSpace.
getBaseDirectory() - Static method in class net.imagej.util.AppUtils: Deprecated.
Use App.getBaseDirectory() instead.
getBaseName() - Method in class net.imagej.updater.FileObject
getBestZoomLevel(double) - Method in class net.imagej.display.DefaultImageCanvas
getBestZoomLevel(double) - Method in interface net.imagej.display.Zoomable: Gets the closest step-wise zoom factor below the given scale.
getBgValues() - Method in class net.imagej.options.OptionsChannels
getBigInteger() - Method in class net.imagej.types.UnboundedIntegerType
getBitsPerPixel() - Method in class net.imagej.types.PreciseFixedFloatType
getBitsPerPixel() - Method in class net.imagej.types.UnboundedIntegerType
getBoolean(String, boolean) - Method in class net.imagej.matlab.ImageJMATLABPrefService
getBoolean(Class<?>, String, boolean) - Method in class net.imagej.matlab.ImageJMATLABPrefService
getBorderSize() - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter
getBounds() - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
getBounds() - Method in class net.imagej.ui.swing.overlay.PointFigure
getBounds() - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
getBrightness() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
getBuffer(A) - Method in interface net.imagej.ops.join.BufferFactory
getBuffer(A) - Method in class net.imagej.ops.join.DefaultJoin2Computers
getBuffer(A) - Method in class net.imagej.ops.join.DefaultJoinNComputers
getButtons() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getButtons() - Method in class net.imagej.patcher.HeadlessGenericDialog
getByName(String) - Method in interface net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation
getByName(String) - Method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation2D
getByName(String) - Method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation3D
getBytesOfInfo() - Method in interface net.imagej.Dataset
getBytesOfInfo() - Method in class net.imagej.DefaultDataset
getCachedChecksums() - Method in class net.imagej.updater.Checksummer
getCancelReason() - Method in class net.imagej.ops.filter.tubeness.DefaultTubeness
getCancelReason() - Method in class net.imagej.ops.thread.chunker.AbstractChunker
getCancelReason() - Method in class net.imagej.ops.thread.chunker.ChunkerInterleaved
getCancelReason() - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
getCancelReason() - Method in class net.imagej.plugins.commands.debug.PointSetDemo
getCanvas() - Method in class net.imagej.display.DefaultImageDisplay
getCanvas() - Method in class net.imagej.display.event.CanvasEvent
getCanvas() - Method in interface net.imagej.display.ImageDisplay
getCanvas() - Method in class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer
getCanvas() - Method in interface net.imagej.ui.swing.viewer.image.SwingImageDisplayViewer: Gets the JHotDraw canvas used by the viewer.
getCategories() - Method in class net.imagej.updater.FileObject
getCellEditor(int, int) - Method in class net.imagej.ui.swing.updater.FileTable
getCenter(double[]) - Method in class net.imagej.overlay.AngleOverlay
getCenter(int) - Method in class net.imagej.overlay.AngleOverlay
getCenterPoint() - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter.AngleFigure
getCenterU() - Method in class net.imagej.plugins.commands.zoom.ZoomSet
getCenterV() - Method in class net.imagej.plugins.commands.zoom.ZoomSet
getCentroid() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet: Get the centroid of this facet.
getChanges() - Method in class net.imagej.ui.swing.updater.DiffView: Get the number of added or removed lines.
getChannelCount() - Method in class net.imagej.ChannelCollection: Returns the number of channels in the collection
getChannelCount() - Method in interface net.imagej.display.DatasetView: Gets the number of channels in the displayed data.
getChannelCount() - Method in class net.imagej.display.DefaultDatasetView
getChannelMax(int) - Method in interface net.imagej.display.DatasetView: Gets the maximum value in the display range, for the given channel.
getChannelMax(int) - Method in class net.imagej.display.DefaultDatasetView
getChannelMaximum(int) - Method in class net.imagej.DefaultDataset
getChannelMaximum(int) - Method in interface net.imagej.ImageMetadata: Gets the maximum actual pixel value for the given channel.
getChannelMaximum(int) - Method in class net.imagej.ImgPlus
getChannelMin(int) - Method in interface net.imagej.display.DatasetView: Gets the minimum value in the display range, for the given channel.
getChannelMin(int) - Method in class net.imagej.display.DefaultDatasetView
getChannelMinimum(int) - Method in class net.imagej.DefaultDataset
getChannelMinimum(int) - Method in interface net.imagej.ImageMetadata: Gets the minimum actual pixel value for the given channel.
getChannelMinimum(int) - Method in class net.imagej.ImgPlus
getChannelPosition() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMask
getChannels() - Method in interface net.imagej.Dataset: Gets the length of the Axes.CHANNEL axis, or 1 if no such axis.
getChannels() - Method in class net.imagej.DrawingTool
getChannelValue(long) - Method in class net.imagej.ChannelCollection: Gets the value of a channel in the collection
getCheckboxes() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getCheckboxes() - Method in class net.imagej.patcher.HeadlessGenericDialog
getChecksum() - Method in class net.imagej.updater.FileObject
getChoice(Component, List<String>, String, String) - Static method in class net.imagej.ui.swing.updater.SwingTools
getChoices() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getChoices() - Method in class net.imagej.patcher.HeadlessGenericDialog
getChoices() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
getClass(Object) - Static method in class net.imagej.ops.OpMatchingUtil: Gets the "useful" class information carries on the given object, which depends on the actual type of the object.
getClassLoader() - Method in class imagej.patcher.LegacyEnvironment: Deprecated.

Gets the class loader containing the ImageJ 1.x classes used in this legacy environment.
getClassLoader() - Method in class net.imagej.legacy.IJ1Helper
getClassLoader() - Method in class net.imagej.patcher.LegacyEnvironment: Gets the class loader containing the ImageJ 1.x classes used in this legacy environment.
getClassNameConstant(int) - Method in class net.imagej.updater.util.ByteCodeAnalyzer
getClassPath(ClassLoader) - Static method in class net.imagej.launcher.ClassLoaderPlus
getClasspathElements(ClassLoader, StringBuilder, ClassLoader...) - Static method in class net.imagej.patcher.LegacyHooks: Do not use: for internal use only.
getClassVersion(File) - Static method in class net.imagej.updater.Diff: Get the version of a class file.
getClassVersion(InputStream) - Static method in class net.imagej.updater.Diff: Get the version of a class file.
getClient() - Method in class net.imagej.omero.DefaultOMEROSession
getClient() - Method in interface net.imagej.omero.OMEROSession: Gets the omero.client associated with this OMEROSession
getCoefficient(int) - Method in class net.imagej.ops.features.zernike.helper.Polynom: return the coefficient at a given position.
getColocValue() - Method in class net.imagej.ops.coloc.pValue.PValueResult
getColocValuesArray() - Method in class net.imagej.ops.coloc.pValue.PValueResult
getColor(ChannelCollection) - Method in interface net.imagej.display.DatasetView
getColor(ChannelCollection) - Method in class net.imagej.display.DefaultDatasetView: Reason from a channel collection and internal state what the closest color is.
getColor() - Method in class net.imagej.plugins.commands.assign.FillDataValues
getColor() - Method in class net.imagej.plugins.commands.overlay.ConvertToMask
getColor() - Method in class net.imagej.plugins.tools.PixelRecorder: Returns the color of the pixel associated with the processed mouse event.
getColorMode() - Method in interface net.imagej.display.DatasetView
getColorMode() - Method in class net.imagej.display.DefaultDatasetView
getColorMode() - Method in class net.imagej.plugins.commands.display.ChannelsTool
getColorTable(int) - Method in class net.imagej.DefaultDataset
getColorTable(int) - Method in interface net.imagej.ImageMetadata: Gets the color table at the given position.
getColorTable(int) - Method in class net.imagej.ImgPlus
getColorTableCount() - Method in class net.imagej.DefaultDataset
getColorTableCount() - Method in interface net.imagej.ImageMetadata: Gets the number of available ColorTables.
getColorTableCount() - Method in class net.imagej.ImgPlus
getColorTables() - Method in interface net.imagej.display.DatasetView
getColorTables() - Method in class net.imagej.display.DefaultDatasetView
getColumnClass(int) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
getColumnClass(int) - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel
getColumnCount() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
getColumnCount() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
getColumnCount() - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
getColumnCount() - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel
getColumnHeader(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
getColumnIndex(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
getColumnName(int) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
getColumnName(int) - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel
getCommands() - Method in class net.imagej.legacy.IJ1Helper
getCompatibleCUDA() - Method in class net.imagej.tensorflow.TensorFlowVersion
getCompatibleCuDNN() - Method in class net.imagej.tensorflow.TensorFlowVersion
getCompletions(CompletionProvider) - Method in interface net.imagej.legacy.plugin.MacroExtensionAutoCompletionPlugin
getCompletions(CompletionProvider) - Method in class net.imagej.legacy.plugin.MacroExtensionAutoCompletionService
getComponent() - Method in class net.imagej.legacy.ui.LegacyApplicationFrame
getComponent() - Method in class net.imagej.legacy.ui.LegacyStatusBar
getComponent() - Method in class net.imagej.legacy.ui.LegacyToolBar
getComponentType() - Method in class net.imagej.legacy.ui.LegacyApplicationFrame
getComponentType() - Method in class net.imagej.legacy.ui.LegacyStatusBar
getComponentType() - Method in class net.imagej.legacy.ui.LegacyToolBar
getCompositeChannelCount() - Method in class net.imagej.DefaultDataset
getCompositeChannelCount() - Method in interface net.imagej.ImageMetadata: Gets the number of channels intended to be displayed together.
getCompositeChannelCount() - Method in class net.imagej.ImgPlus
getCompositeDimIndex() - Method in interface net.imagej.display.DatasetView
getCompositeDimIndex() - Method in class net.imagej.display.DefaultDatasetView
getComputeEstimateOp() - Method in class net.imagej.ops.deconvolve.PadAndRichardsonLucy: set up and return the compute estimate op.
getComputeEstimateOp() - Method in class net.imagej.ops.deconvolve.PadAndRichardsonLucyTV
getComputer(int) - Method in class net.imagej.ops.image.integral.AbstractIntegralImg: Implements the row-wise addition required for computations of integral images.
getComputer(int) - Method in class net.imagej.ops.image.integral.DefaultIntegralImg
getComputer(int) - Method in class net.imagej.ops.image.integral.SquareIntegralImg
getConflict() - Method in class net.imagej.updater.Conflicts.Conflict
getConflicts(boolean) - Method in class net.imagej.updater.Conflicts
getConflicts() - Method in class net.imagej.updater.FilesCollection
getConnectedType() - Method in class net.imagej.plugins.commands.binary.AbstractMorphOpsCommand
getConnectivity() - Method in class net.imagej.plugins.tools.FloodFillTool: Gets this flood fill's current connectivity (4 or 8 connected).
getConsolePane() - Method in class net.imagej.legacy.ui.LegacyUI
getConstrainXY() - Method in class net.imagej.plugins.commands.imglib.ResizeImage: Gets whether command will constrain XY aspect ratio.
getContext() - Method in class imagej.patcher.LegacyHooks: Deprecated.

Return the current context, if any.
getContext() - Method in class net.imagej.AbstractData
getContext() - Method in class net.imagej.legacy.DefaultLegacyHooks
getContext() - Method in class net.imagej.patcher.LegacyHooks: Returns the current context, if any.
getContrast() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
getConverter() - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.IJLineToLineOMEROConverter
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.OvalRoiToEllipsoidOMEROConverter
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.PointRoiToRealPointCollectionOMEROConverter
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.PolygonRoiToPolygon2DOMEROConverter
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.PolylineRoiToPolylineOMEROConverter
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.PolylineRoiToRealMaskRealIntervalOMEROConverter
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.RoiToBoxOMEROConverter
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.RoiToMaskIntervalOMEROConverter
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.ShapeRoiToMaskRealIntervalOMEROConverter
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.TextRoiToTextRoiWrapperOMEROConverter
getCooccurrenceMatrix(IterableInterval<T>) - Method in class net.imagej.ops.features.haralick.AbstractHaralickFeature: Creates CooccurrenceMatrix2D from IterableInterval on demand, given the specified parameters.
getCornerDiameter() - Method in class net.imagej.options.OptionsRoundedRectangleTool
getCornerRepresentation() - Method in class net.imagej.ops.image.integral.IntegralCursor
getCrashFile(String) - Static method in class net.imagej.tensorflow.util.TensorFlowUtil
getCreatedAt() - Method in class net.imagej.server.services.DefaultObjectInfo
getCreatedAt() - Method in interface net.imagej.server.services.ObjectInfo
getCreatedBy() - Method in class net.imagej.server.services.DefaultObjectInfo
getCreatedBy() - Method in interface net.imagej.server.services.ObjectInfo
getCreateOp() - Method in class net.imagej.ops.filter.AbstractFFTFilterC
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter
getCreationTool(ImageDisplay) - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.PointJHotDrawOverlay
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.ThresholdJHotDrawAdapter
getCredentials() - Method in class net.imagej.omero.OMEROFormat.Metadata
getCredentials(String) - Method in class net.imagej.plugins.uploaders.webdav.NetrcParser
getCredentials(String, String) - Method in class net.imagej.plugins.uploaders.webdav.NetrcParser
getCredentials(NetrcParser.Credentials) - Method in class net.imagej.plugins.uploaders.webdav.NetrcParser: Obtains the credentials from $HOME/.netrc for the given hostname (and optionally username).
getCurrentLastModified() - Method in class net.imagej.updater.FilesUploader
getCursor() - Method in class net.imagej.display.DefaultImageCanvas
getCursor() - Method in interface net.imagej.display.ImageCanvas: Gets the current mouse cursor.
getCursor() - Method in class net.imagej.plugins.tools.PanTool
getCursor() - Method in class net.imagej.ui.swing.tools.SwingPointTool
getCursor() - Method in class net.imagej.ui.swing.tools.SwingTextTool
getCX() - Method in class net.imagej.plugins.tools.PixelRecorder: Returns the X value of the mouse event in image coordinate space.
getCY() - Method in class net.imagej.plugins.tools.PixelRecorder: Returns the Y value of the mouse event in image coordinate space.
getData() - Method in class net.imagej.display.AbstractDataView
getData() - Method in interface net.imagej.display.DatasetView
getData() - Method in interface net.imagej.display.DataView: Gets the Data represented by this view.
getData() - Method in class net.imagej.display.DefaultDatasetView
getData() - Method in class net.imagej.display.DefaultOverlayView
getData() - Method in interface net.imagej.display.OverlayView
getDataMax() - Method in class net.imagej.widget.HistogramBundle: Gets the maximum value of the actual data range.
getDataMin() - Method in class net.imagej.widget.HistogramBundle: Gets the minimum value of the actual data range.
getDataset() - Method in class net.imagej.DrawingTool: Return the Dataset associated with this DrawingTool.
getDataset(MatlabNumericArray) - Method in class net.imagej.matlab.DefaultImageJMATLABService
getDataset() - Method in class net.imagej.matlab.ImageJMATLABCommands: Converts the active Dataset to a MATLAB matrix, stored in a variable using Named.getName().
getDataset(MatlabNumericArray) - Method in interface net.imagej.matlab.ImageJMATLABService: Converts a MatlabNumericArray retrieved from MATLAB to an Dataset.
getDataset() - Method in class net.imagej.plugins.commands.assign.FillDataValues
getDataset() - Method in class net.imagej.plugins.commands.imglib.Binner: Gets the Dataset that the bin operation will be run upon.
getDataset() - Method in class net.imagej.plugins.commands.imglib.ResizeImage: Gets the Dataset that the resize operation will be run upon.
getDataset() - Method in class net.imagej.plugins.commands.imglib.ResliceImage: Gets the Dataset that the reslice operation will be run upon.
getDataset() - Method in class net.imagej.plugins.commands.imglib.RotateImageXY: Gets the Dataset that the rotate operation will be run upon.
getDataset() - Method in class net.imagej.plugins.commands.imglib.TranslateImage: Gets the Dataset that the translate operation will be run upon.
getDataset() - Method in class net.imagej.plugins.commands.io.NewImage
getDataset() - Method in class net.imagej.plugins.commands.restructure.AddAxis
getDataset() - Method in class net.imagej.plugins.commands.restructure.AddData
getDataset() - Method in class net.imagej.plugins.commands.restructure.DeleteAxis
getDataset() - Method in class net.imagej.plugins.commands.restructure.DeleteData
getDataset() - Method in class net.imagej.plugins.commands.restructure.EditAxes
getDataset() - Method in class net.imagej.plugins.commands.restructure.FlipAxis
getDataset() - Method in class net.imagej.plugins.commands.restructure.ReorderData
getDataset() - Method in class net.imagej.plugins.tools.PixelRecorder: Returns the Dataset associated with the processed mouse event.
getDataset(DataView) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
getDatasetAs(String) - Method in class net.imagej.matlab.ImageJMATLABCommands: As ImageJMATLABCommands.getDataset(), using the specified variable name.
getDatasetID() - Method in class net.imagej.omero.OMEROFormat.Metadata
getDatasets() - Method in interface net.imagej.DatasetService: Gets a list of all Datasets.
getDatasets(ImageDisplay) - Method in interface net.imagej.DatasetService: Gets a list of Datasets linked to the given ImageDisplay.
getDatasets() - Method in class net.imagej.DefaultDatasetService
getDatasets(ImageDisplay) - Method in class net.imagej.DefaultDatasetService
getDatasetView() - Method in class net.imagej.plugins.commands.display.AutoContrast
getDataType() - Method in class net.imagej.lut.io.LUTIOPlugin
getDataType() - Method in interface net.imagej.mesh.io.MeshIOPlugin
getDataType() - Method in interface net.imagej.mesh.io.PointsIOPlugin
getDataType() - Method in class net.imagej.plugins.commands.io.NewImage
getDataType() - Method in class net.imagej.server.external.DefaultTableIOPlugin
getDataView() - Method in class net.imagej.ui.swing.viewer.image.DatasetFigureView
getDataView() - Method in interface net.imagej.ui.swing.viewer.image.FigureView: Gets the linked ImageJ data view.
getDataView() - Method in class net.imagej.ui.swing.viewer.image.OverlayFigureView
getDataViews() - Method in class net.imagej.display.DefaultImageDisplayService
getDataViews() - Method in interface net.imagej.display.ImageDisplayService: Gets the list of available DataViews.
getDataViews() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
getDefaultAutoscaleMethod() - Method in interface net.imagej.autoscale.AutoscaleService: Returns the default autoscaling method.
getDefaultAutoscaleMethod() - Method in class net.imagej.autoscale.DefaultAutoscaleService
getDefaultColorTable(int) - Static method in class net.imagej.display.ColorTables: Gets the color table corresponding to a default channel ordering of RGBCMY.
getDefaultImports() - Method in class net.imagej.legacy.plugin.LegacyAutoImporter
getDefaultIntervalRange(IterableInterval<? extends RealType<?>>) - Method in interface net.imagej.autoscale.AutoscaleService: Calculates the range of interest from the data contained in the given IterableInterval using the default autoscale method.
getDefaultIntervalRange(IterableInterval<? extends RealType<?>>) - Method in class net.imagej.autoscale.DefaultAutoscaleService
getDefaultRandomAccessRange(RandomAccessibleInterval<? extends RealType<?>>) - Method in interface net.imagej.autoscale.AutoscaleService: Calculates the range of interest from the data contained in the given RandomAccessibleInterval using the default autoscale method.
getDefaultRandomAccessRange(RandomAccessibleInterval<? extends RealType<?>>) - Method in class net.imagej.autoscale.DefaultAutoscaleService
getDefaultSettings() - Method in class net.imagej.display.DefaultOverlayService
getDefaultSettings() - Method in interface net.imagej.display.OverlayService
getDefaultUsername() - Method in class net.imagej.updater.FilesUploader
getDefaultValue() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
getDelta(int) - Method in class net.imagej.plugins.commands.imglib.TranslateImage: Gets the translation delta for a given axis.
getDependencies() - Method in class net.imagej.updater.FileObject
getDependencies(boolean) - Method in class net.imagej.updater.FilesCollection: Gets a map listing all the dependencees of files to be installed or updated.
getDependencies(Iterable<FileObject>, boolean) - Method in class net.imagej.updater.FilesCollection: Gets a map listing all the dependencees of the specified files.
getDependencies(File, String) - Method in class net.imagej.updater.util.DependencyAnalyzer
getDependencies(File, FileObject) - Method in class net.imagej.updater.util.DependencyAnalyzer
getDepth() - Method in interface net.imagej.Dataset: Gets the length of the Axes.Z axis, or 1 if no such axis.
getDescription() - Method in interface net.imagej.plugins.commands.assign.noisereduce.Neighborhood
getDescription() - Method in class net.imagej.plugins.commands.assign.noisereduce.RadialNeigh
getDescription() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeigh
getDescription() - Method in class net.imagej.plugins.tools.AbstractColorTool
getDescription() - Method in class net.imagej.updater.Conflicts.Resolution
getDescription() - Method in class net.imagej.updater.FileObject
getDescription() - Method in class net.imagej.updater.UpdateSite
getDesktop() - Method in class net.imagej.legacy.ui.LegacyUI
getDestination() - Method in interface net.imagej.updater.util.Downloadable
getDeveloperActions() - Method in enum net.imagej.updater.FileObject.Status
getDigest(String, File, long) - Method in class net.imagej.updater.Checksummer
getDigest(String, File) - Static method in class net.imagej.updater.util.UpdaterUtil
getDigest() - Static method in class net.imagej.updater.util.UpdaterUtil
getDimension(int) - Method in class net.imagej.plugins.commands.imglib.ResizeImage: Gets the given dimension of the resized image.
getDimension(AxisType) - Method in class net.imagej.plugins.commands.io.NewImage
getDimensionality() - Method in class net.imagej.plugins.commands.assign.noisereduce.RadialNeighborhoodSpecifier
getDimensionality() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
getDimensions(Dataset, AxisType, long) - Static method in class net.imagej.plugins.commands.restructure.RestructureUtils: Gets the dimensions of the output data
getDirectory(String, File) - Method in class net.imagej.legacy.IJ1Helper: Chooses a directory using ImageJ 1.x' directory chooser.
getDisplay() - Method in class net.imagej.animation.Animation: Gets the display being animated.
getDisplay() - Method in class net.imagej.app.AboutImageJ
getDisplay() - Method in class net.imagej.display.DefaultImageCanvas
getDisplay() - Method in class net.imagej.display.event.ImageDisplayEvent
getDisplay() - Method in interface net.imagej.display.ImageCanvas: Gets the canvas's display.
getDisplay() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
getDisplay() - Method in class net.imagej.plugins.commands.animation.StartAnimation
getDisplay() - Method in class net.imagej.plugins.commands.animation.StopAnimation
getDisplay() - Method in class net.imagej.plugins.commands.assign.AbsDataValues
getDisplay() - Method in class net.imagej.plugins.commands.assign.AddNoiseToDataValues
getDisplay() - Method in class net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues
getDisplay() - Method in class net.imagej.plugins.commands.assign.EquationDataValues
getDisplay() - Method in class net.imagej.plugins.commands.assign.ExpDataValues
getDisplay() - Method in class net.imagej.plugins.commands.assign.InvertDataValues
getDisplay() - Method in class net.imagej.plugins.commands.assign.LogDataValues
getDisplay() - Method in class net.imagej.plugins.commands.assign.MathCommand
getDisplay() - Method in class net.imagej.plugins.commands.assign.ReciprocalDataValues
getDisplay() - Method in class net.imagej.plugins.commands.assign.SquareDataValues
getDisplay() - Method in class net.imagej.plugins.commands.assign.SquareRootDataValues
getDisplay() - Method in class net.imagej.plugins.commands.axispos.AxisPositionBackward
getDisplay() - Method in class net.imagej.plugins.commands.axispos.AxisPositionForward
getDisplay() - Method in class net.imagej.plugins.commands.axispos.SetActiveAxis
getDisplay() - Method in class net.imagej.plugins.commands.correlate.AbstractShadows
getDisplay() - Method in class net.imagej.plugins.commands.correlate.ShadowsDemo
getDisplay() - Method in class net.imagej.plugins.commands.correlate.SharpenDataValues
getDisplay() - Method in class net.imagej.plugins.commands.correlate.SmoothDataValues
getDisplay() - Method in class net.imagej.plugins.commands.display.DeselectOverlays
getDisplay() - Method in class net.imagej.plugins.commands.display.Flatten
getDisplay() - Method in class net.imagej.plugins.commands.display.HistogramPlot
getDisplay() - Method in class net.imagej.plugins.commands.display.RemoveOverlayReferences
getDisplay() - Method in class net.imagej.plugins.commands.display.SelectOverlays
getDisplay() - Method in class net.imagej.plugins.commands.display.SelectView
getDisplay() - Method in class net.imagej.plugins.commands.display.ShowLUT
getDisplay() - Method in class net.imagej.plugins.commands.imglib.CropImage
getDisplay() - Method in class net.imagej.plugins.commands.imglib.NanBackground
getDisplay() - Method in class net.imagej.plugins.commands.imglib.SaltAndPepper
getDisplay() - Method in class net.imagej.plugins.commands.neigh.FindEdges
getDisplay() - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
getDisplay() - Method in class net.imagej.plugins.commands.restructure.ReorderAxis: Gets the ImageDisplay to be changed.
getDisplay() - Method in class net.imagej.plugins.commands.rotate.FlipHorizontally
getDisplay() - Method in class net.imagej.plugins.commands.rotate.FlipVertically
getDisplay() - Method in class net.imagej.plugins.commands.rotate.Rotate90DegreesLeft
getDisplay() - Method in class net.imagej.plugins.commands.rotate.Rotate90DegreesRight
getDisplay() - Method in class net.imagej.plugins.commands.zoom.Zoom100Percent
getDisplay() - Method in class net.imagej.plugins.commands.zoom.ZoomIn
getDisplay() - Method in class net.imagej.plugins.commands.zoom.ZoomOriginalScale
getDisplay() - Method in class net.imagej.plugins.commands.zoom.ZoomOut
getDisplay() - Method in class net.imagej.plugins.commands.zoom.ZoomSet
getDisplay() - Method in class net.imagej.plugins.commands.zoom.ZoomToSelection
getDisplay() - Method in class net.imagej.sampler.SamplingDefinition: Returns the input ImageDisplay of the SamplingDefinition.
getDisplay() - Method in class net.imagej.ui.swing.overlay.FigureCreatedEvent: Gets the associated ImageDisplay.
getDisplay() - Method in class net.imagej.ui.swing.overlay.IJBezierTool
getDisplay() - Method in class net.imagej.ui.swing.overlay.IJCreationTool
getDisplay() - Method in class net.imagej.ui.swing.overlay.IJDelegationSelectionTool
getDisplay() - Method in interface net.imagej.ui.swing.overlay.JHotDrawTool: Gets the ImageDisplay associated with this JHotDraw tool.
getDisplay() - Method in class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel
getDisplay() - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
getDisplay() - Method in interface net.imagej.ui.viewer.image.ImageDisplayPanel
getDisplay() - Method in interface net.imagej.ui.viewer.image.ImageDisplayViewer
getDisplays(Overlay) - Method in class net.imagej.display.DefaultOverlayService
getDisplays(Overlay) - Method in interface net.imagej.display.OverlayService: Returns all the displays associated with an overlay
getDisplayService() - Method in class net.imagej.display.DefaultImageDisplayService
getDisplayService() - Method in interface net.imagej.display.ImageDisplayService
getDisplayService() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
getDistanceToFaceInFront() - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
getDivByZeroVal() - Method in class net.imagej.options.OptionsMisc
getDocument() - Method in class net.imagej.ui.swing.updater.DiffView: Access the underlying document.
getDotSize() - Method in class net.imagej.plugins.tools.SprayCanTool
getDouble(String, double) - Method in class net.imagej.matlab.ImageJMATLABPrefService
getDouble(Class<?>, String, double) - Method in class net.imagej.matlab.ImageJMATLABPrefService
getDoublePosition(int) - Method in class net.imagej.display.AbstractDataView
getDoublePosition(int) - Method in class net.imagej.display.DefaultImageDisplay
getDoublePosition(int) - Method in interface net.imagej.mesh.Vertex
getDoublePosition(int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
getDoublePosition(int) - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
getDoublePosition(int) - Method in class net.imagej.ops.image.integral.IntegralCursor
getDoublePosition(int) - Method in class net.imagej.Position: Gets the current Position's i'th coordinate as a double
getDrawing() - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
getDrawingArea() - Method in class net.imagej.ui.swing.overlay.PointFigure
getDrawingArea() - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
getDrawingEditor() - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
getDrawingView() - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
getEndArrowStyle() - Method in class net.imagej.options.OptionsOverlay
getEndArrowStyle() - Method in class net.imagej.overlay.OverlaySettings
getEndingWavelength() - Method in class net.imagej.plugins.commands.display.SpectralComposite
getEndLineArrowStyle() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
getEndPoint() - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
getEndPoint1() - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter.AngleFigure
getEndPoint2() - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter.AngleFigure
getEntry(int) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
getEpsilon() - Method in class net.imagej.ops.geom.geom3d.DefaultConvexHull3D: Gets the epsilon value of the last executed calculation.
getEquation() - Method in class net.imagej.plugins.commands.assign.EquationDataValues
getError() - Method in class net.imagej.plugins.commands.imglib.Binner: Returns the current error message if any.
getError() - Method in class net.imagej.plugins.commands.imglib.ResizeImage: Returns the current error message if any.
getError() - Method in class net.imagej.plugins.commands.imglib.ResliceImage: Returns the current error message if any.
getError() - Method in class net.imagej.plugins.commands.imglib.TranslateImage: Returns the current error message if any.
getError() - Method in class net.imagej.sampler.AxisSubrange
getError() - Method in class net.imagej.sampler.SamplingDefinition: Returns the current value of the error string of the SamplingDefinition.
getErrorMessage() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getErrorMessage() - Method in class net.imagej.minmax.DefaultMinMaxMethod
getErrorMessage() - Method in interface net.imagej.minmax.MinMaxMethod
getErrorMessage() - Method in class net.imagej.patcher.HeadlessGenericDialog
getErrorMessage() - Method in interface net.imagej.plugins.commands.imglib.OutputAlgorithm
getErrorMessage() - Method in class net.imagej.plugins.commands.rotate.XYFlipper: Returns the current error message.
getEventService() - Method in interface net.imagej.animation.AnimationService
getEventService() - Method in class net.imagej.animation.DefaultAnimationService
getEventService() - Method in class net.imagej.display.DefaultImageDisplayService
getEventService() - Method in class net.imagej.display.DefaultWindowService
getEventService() - Method in interface net.imagej.display.ImageDisplayService
getEventService() - Method in interface net.imagej.display.WindowService
getEventService() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
getExperimenter() - Method in class net.imagej.omero.DefaultOMEROSession
getExperimenter() - Method in interface net.imagej.omero.OMEROSession: Gets the Experimenter associated with this OMEROSession
getExtensions() - Method in class net.imagej.legacy.plugin.IJ1MacroLanguage
getExtent() - Method in class net.imagej.autoscale.DataRange: Returns the extent of the data range (max - min).
getExtent(int) - Method in class net.imagej.overlay.RectangleOverlay
getExtents() - Method in class net.imagej.Position: Returns the parent space Extents associated with this Position.
getFacesInFront() - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
getFactor(int) - Method in class net.imagej.plugins.commands.imglib.Binner: Gets the reduction factor for a given dimension.
getFFTDimensionsRealToComplex(boolean, Dimensions) - Static method in class net.imagej.ops.filter.fft.FFTMethodsUtility: Calculates complex FFT size for real to complex FFT
getFFTInput() - Method in class net.imagej.ops.filter.AbstractFFTFilterC
getFFTKernel() - Method in class net.imagej.ops.filter.AbstractFFTFilterC
getFgValues() - Method in class net.imagej.options.OptionsChannels
getFigure() - Method in class net.imagej.ui.swing.overlay.FigureCreatedEvent: Gets the newly created Figure.
getFigure() - Method in class net.imagej.ui.swing.viewer.image.DatasetFigureView
getFigure() - Method in interface net.imagej.ui.swing.viewer.image.FigureView: Gets the linked JHotDraw figure.
getFigure() - Method in class net.imagej.ui.swing.viewer.image.OverlayFigureView
getFile(int) - Method in class net.imagej.ui.swing.updater.FileTable
getFileDependencies(FilesCollection, boolean) - Method in class net.imagej.updater.FileObject
getFileFromDigest(String, String) - Method in class net.imagej.updater.FilesCollection
getFilename() - Method in class net.imagej.updater.Conflicts.Conflict
getFilename() - Method in class net.imagej.updater.FileObject
getFilename(boolean) - Method in class net.imagej.updater.FileObject
getFilename(String, boolean) - Static method in class net.imagej.updater.FileObject
getFilename(long) - Method in class net.imagej.updater.FileObject: Returns the file name for the given date, as per the update site.
getFilename() - Method in class net.imagej.updater.FilesUploader.DbXmlFile
getFilename() - Method in interface net.imagej.updater.Uploadable
getFilename() - Method in class net.imagej.updater.UploadableFile
getFilesCollection() - Method in class net.imagej.updater.FilesUploader
getFilesize() - Method in class net.imagej.updater.FilesUploader.DbXmlFile
getFilesize() - Method in interface net.imagej.updater.Uploadable
getFilesize() - Method in class net.imagej.updater.UploadableFile
getFilesize() - Method in interface net.imagej.updater.util.Downloadable
getFillColor() - Method in class net.imagej.options.OptionsOverlay
getFillColor() - Method in class net.imagej.options.OptionsRoundedRectangleTool
getFillColor() - Method in class net.imagej.overlay.AbstractOverlay
getFillColor() - Method in interface net.imagej.overlay.Overlay
getFillColor() - Method in class net.imagej.overlay.OverlaySettings
getFillColor() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
getFillOpacity() - Method in class net.imagej.options.OptionsRoundedRectangleTool
getFillType() - Method in class net.imagej.plugins.commands.io.NewImage
getFirst() - Method in class net.imagej.animation.Animation
getFirst() - Method in class net.imagej.ops.join.DefaultJoin2Computers
getFirst() - Method in class net.imagej.ops.join.DefaultJoin2Inplaces
getFirst() - Method in class net.imagej.ops.join.DefaultJoinComputerAndInplace
getFirst() - Method in class net.imagej.ops.join.DefaultJoinInplaceAndComputer
getFirst() - Method in interface net.imagej.ops.join.Join2Ops
getFirst() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
getFirstDisplay(Overlay) - Method in class net.imagej.display.DefaultOverlayService
getFirstDisplay(Overlay) - Method in interface net.imagej.display.OverlayService: Returns the first display associated with an overlay
getFloat(String, float) - Method in class net.imagej.matlab.ImageJMATLABPrefService
getFloat(Class<?>, String, float) - Method in class net.imagej.matlab.ImageJMATLABPrefService
getFloatPosition(int) - Method in class net.imagej.display.AbstractDataView
getFloatPosition(int) - Method in class net.imagej.display.DefaultImageDisplay
getFloatPosition(int) - Method in interface net.imagej.mesh.Vertex
getFloatPosition(int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
getFloatPosition(int) - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
getFloatPosition(int) - Method in class net.imagej.ops.image.integral.IntegralCursor
getFloatPosition(int) - Method in class net.imagej.Position: Gets the current Position's i'th coordinate as a float
getFont() - Method in class net.imagej.options.OptionsFont
getFontFamily() - Method in class net.imagej.DrawingTool: Gets the family name of the drawing font.
getFontFamily() - Method in class net.imagej.render.DummyTextRenderer
getFontFamily() - Method in interface net.imagej.render.TextRenderer
getFontFamily() - Method in class net.imagej.ui.awt.AWTTextRenderer
getFontSize() - Method in class net.imagej.DrawingTool: Gets the size of the drawing font.
getFontSize() - Method in class net.imagej.options.OptionsFont
getFontSize() - Method in class net.imagej.render.DummyTextRenderer
getFontSize() - Method in interface net.imagej.render.TextRenderer
getFontSize() - Method in class net.imagej.ui.awt.AWTTextRenderer
getFontStyle() - Method in class net.imagej.DrawingTool: Gets the style of the drawing font.
getFontStyle() - Method in class net.imagej.options.OptionsFont
getFontStyle() - Method in class net.imagej.render.DummyTextRenderer
getFontStyle() - Method in interface net.imagej.render.TextRenderer
getFontStyle() - Method in class net.imagej.ui.awt.AWTTextRenderer
getFormatName() - Method in class net.imagej.omero.OMEROFormat
getFPS() - Method in class net.imagej.animation.Animation
getFPS() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
getFrames() - Method in interface net.imagej.Dataset: Gets the length of the Axes.TIME axis, or 1 if no such axis.
getFreeColumn(String) - Method in class net.imagej.legacy.convert.TableWrapper
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionAlphaTrimmedMean
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionContraharmonicMean
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionGeometricMean
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionHarmonicMean
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMax
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMean
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMedian
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMidpoint
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMin
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionTrimmedMean
getGateway() - Method in class net.imagej.omero.DefaultOMEROSession
getGateway() - Method in interface net.imagej.omero.OMEROSession: Gets the Gateway associated with this OMEROSession
getGeneralPath() - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
getGenericType() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
getGradients() - Method in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata: returns the gradient image
getGradientsRandomAccess() - Method in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata: returns the gradient image's RandomAccess
getGroupId() - Method in class net.imagej.app.ImageJApp
getGroupId() - Method in class net.imagej.legacy.LegacyImageJApp
getHalfTrimWidth() - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionTrimmedMean
getHeader() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
getHeight() - Method in interface net.imagej.Dataset: Gets the length of the Axes.Y axis, or 1 if no such axis.
getHeight() - Method in class net.imagej.options.OptionsProfilePlot
getHeight() - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
getHistogram(int) - Method in class net.imagej.widget.HistogramBundle: Gets the histogram of interest for this HistogramBundle.
getHistogramCount() - Method in class net.imagej.widget.HistogramBundle: Returns the total number of histograms contained in this bundle.
getHost() - Method in class net.imagej.updater.UpdateSite
getHostname() - Method in class net.imagej.plugins.uploaders.webdav.NetrcParser.Credentials
getIconURL() - Method in class imagej.patcher.LegacyHooks: Deprecated.

Returns the icon to use in place of the ImageJ microscope.
getIconURL() - Method in class net.imagej.legacy.DefaultLegacyHooks: Returns the icon for use with ImageJ 1.x.
getIconURL() - Method in interface net.imagej.legacy.plugin.LegacyAppConfiguration: Returns the icon for use with ImageJ 1.x.
getIconURL() - Method in class net.imagej.patcher.LegacyHooks: Returns the icon to use in place of the ImageJ microscope.
getId() - Method in class net.imagej.server.services.DefaultObjectInfo
getId() - Method in interface net.imagej.server.services.ObjectInfo
getIdentifier() - Method in class net.imagej.legacy.command.LegacyCommandInfo
getIdentifier() - Method in class net.imagej.server.mixins.Mixins.ModuleInfoMixIn
getIDList() - Method in class net.imagej.legacy.IJ1Helper
getIds() - Method in class net.imagej.server.resources.ObjectsResource: Lists all object IDs on the imagej-server.
getIds() - Method in class net.imagej.server.services.DefaultObjectService
getIds() - Method in interface net.imagej.server.services.ObjectService: Gets a set of all IDs.
getIJ() - Method in class net.imagej.legacy.IJ1Helper
getIJ1Helper() - Method in class net.imagej.legacy.LegacyService: Gets the helper class responsible for direct interfacing with ImageJ1.
getImag() - Method in class net.imagej.types.BigComplex: Gets imaginary component of this complex number as a BigDecimal.
getImag() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getImage(int) - Method in class net.imagej.legacy.IJ1Helper
getImage() - Method in class net.imagej.omero.OMEROFormat.Metadata
getImageDisplay() - Method in class net.imagej.plugins.commands.display.CaptureImage
getImageDisplay() - Method in class net.imagej.plugins.commands.display.interactive.OrthogonalViews
getImageDisplay() - Method in class net.imagej.plugins.commands.display.interactive.SynchronizeWindows
getImageDisplay() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
getImageDisplay() - Method in class net.imagej.plugins.commands.display.RemoveOverlay
getImageDisplay() - Method in class net.imagej.plugins.commands.misc.Benchmark
getImageDisplay() - Method in class net.imagej.plugins.commands.overlay.AddImage
getImageDisplay() - Method in class net.imagej.plugins.commands.overlay.FromOverlayManager
getImageDisplays() - Method in class net.imagej.display.DefaultImageDisplayService
getImageDisplays() - Method in interface net.imagej.display.ImageDisplayService: Gets a list of all available ImageDisplays.
getImageDisplays() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
getImageDisplays() - Method in class net.imagej.legacy.LegacyImageMap: Gets a list of ImageDisplay instances known to this legacy service.
getImageDisplayService() - Method in class net.imagej.plugins.commands.zoom.ZoomSet
getImageID(Object) - Method in class net.imagej.legacy.IJ1Helper: Gets the ID of the given ImagePlus object.
getImageID() - Method in class net.imagej.omero.OMEROFormat.Metadata
getImageJ1Version(CodeHacker) - Static method in class net.imagej.patcher.LegacyInjector: Determines the ImageJ 1.x version without loading the ImageJ 1.x classes.
getImageJDir() - Static method in class net.imagej.launcher.ClassLoaderPlus
getImageMap() - Method in class net.imagej.legacy.LegacyService: Gets the LegacyImageMap associated with this LegacyService.
getImagePlusInstances() - Method in class net.imagej.legacy.LegacyImageMap: Gets a list of ImagePlus instances known to this legacy service.
getImaginaryDouble() - Method in class net.imagej.types.BigComplex: Gets imaginary component as a double (narrowing possible).
getImaginaryDouble() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getImaginaryDouble() - Method in class net.imagej.types.PreciseFixedFloatType
getImaginaryDouble() - Method in class net.imagej.types.UnboundedIntegerType
getImaginaryFloat() - Method in class net.imagej.types.BigComplex: Gets imaginary component as a float (narrowing possible).
getImaginaryFloat() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getImaginaryFloat() - Method in class net.imagej.types.PreciseFixedFloatType
getImaginaryFloat() - Method in class net.imagej.types.UnboundedIntegerType
getImg() - Method in class net.imagej.ImgPlus: Gets the backing Img of this ImgPlus.
getImgPlus() - Method in interface net.imagej.Dataset: TODO
getImgPlus() - Method in class net.imagej.DefaultDataset
getIndependentInstance() - Method in class net.imagej.ops.join.DefaultJoin2Computers
getIndependentInstance() - Method in class net.imagej.ops.join.DefaultJoin2Inplaces
getIndependentInstance() - Method in class net.imagej.ops.join.DefaultJoinComputerAndInplace
getIndependentInstance() - Method in class net.imagej.ops.join.DefaultJoinInplaceAndComputer
getIndependentInstance() - Method in class net.imagej.ops.join.DefaultJoinNComputers
getIndependentInstance() - Method in class net.imagej.ops.join.DefaultJoinNInplaces
getIndependentInstance() - Method in class net.imagej.ops.loop.DefaultLoopComputer
getIndependentInstance() - Method in class net.imagej.ops.loop.DefaultLoopInplace
getIndependentInstance() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Add
getIndependentInstance() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Divide
getIndependentInstance() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Multiply
getIndependentInstance() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Subtract
getIndependentInstance() - Method in class net.imagej.ops.math.IIToIIOutputII.Add
getIndependentInstance() - Method in class net.imagej.ops.math.IIToIIOutputII.Divide
getIndependentInstance() - Method in class net.imagej.ops.math.IIToIIOutputII.Multiply
getIndependentInstance() - Method in class net.imagej.ops.math.IIToIIOutputII.Subtract
getIndependentInstance() - Method in class net.imagej.ops.math.IIToRAIOutputII.Add
getIndependentInstance() - Method in class net.imagej.ops.math.IIToRAIOutputII.Divide
getIndependentInstance() - Method in class net.imagej.ops.math.IIToRAIOutputII.Multiply
getIndependentInstance() - Method in class net.imagej.ops.math.IIToRAIOutputII.Subtract
getIndependentInstance() - Method in class net.imagej.ops.math.NullaryNumericTypeMath.Zero
getIndependentInstance() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Add
getIndependentInstance() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Divide
getIndependentInstance() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Multiply
getIndependentInstance() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Subtract
getIndependentInstance() - Method in interface net.imagej.ops.special.BinaryOp
getIndependentInstance() - Method in interface net.imagej.ops.special.computer.BinaryComputerOp
getIndependentInstance() - Method in interface net.imagej.ops.special.computer.NullaryComputerOp
getIndependentInstance() - Method in interface net.imagej.ops.special.computer.UnaryComputerOp
getIndependentInstance() - Method in interface net.imagej.ops.special.function.BinaryFunctionOp
getIndependentInstance() - Method in interface net.imagej.ops.special.function.NullaryFunctionOp
getIndependentInstance() - Method in interface net.imagej.ops.special.function.UnaryFunctionOp
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCF
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCFI
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCFI1
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCI
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCI1
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.NullaryHybridCF
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCF
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCFI
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCI
getIndependentInstance() - Method in interface net.imagej.ops.special.inplace.BinaryInplace1OnlyOp
getIndependentInstance() - Method in interface net.imagej.ops.special.inplace.BinaryInplace1Op
getIndependentInstance() - Method in interface net.imagej.ops.special.inplace.BinaryInplaceOnlyOp
getIndependentInstance() - Method in interface net.imagej.ops.special.inplace.BinaryInplaceOp
getIndependentInstance() - Method in interface net.imagej.ops.special.inplace.UnaryInplaceOnlyOp
getIndependentInstance() - Method in interface net.imagej.ops.special.inplace.UnaryInplaceOp
getIndependentInstance() - Method in interface net.imagej.ops.special.NullaryOp
getIndependentInstance() - Method in interface net.imagej.ops.special.SpecialOp
getIndependentInstance() - Method in interface net.imagej.ops.special.UnaryOp
getIndependentInstance() - Method in interface net.imagej.ops.Threadable: Gets a reference to an instance of this object which can be used simultaneously from a second thread while this instance is being used from "its" thread.
getIndex(String) - Method in class net.imagej.omero.legacy.LazyOverlay
getIndex() - Method in class net.imagej.Position: Gets the long index from the current Position.
getIndices() - Method in class net.imagej.sampler.AxisSubrange
getInfo() - Method in class net.imagej.plugins.commands.misc.ShowInfo
getInfo() - Method in class net.imagej.tensorflow.TensorFlowLibraryStatus
getInImageJDirectory(URLClassLoader, String...) - Static method in class net.imagej.launcher.ClassLoaderPlus
getInitialScale() - Method in class net.imagej.display.DefaultImageCanvas
getInitialScale() - Method in interface net.imagej.display.Zoomable: Gets the scale to use when reverting after zooming.
getInput() - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
getInput() - Method in class net.imagej.plugins.commands.overlay.ConvertToMask
getInput1() - Method in class net.imagej.plugins.commands.calculator.ImageCalculator: Returns the Dataset that is input 1 for this image calculation.
getInput2() - Method in class net.imagej.plugins.commands.calculator.ImageCalculator: Returns the Dataset that is input 2 for this image calculation.
getInputAxes() - Method in class net.imagej.sampler.SamplingDefinition: Returns the AxisTypes that are present in the input data.
getInputCalibratedAxes() - Method in class net.imagej.sampler.SamplingDefinition: Returns the set of CalibratedAxis's that are present in the input data.
getInputDisplay() - Method in class net.imagej.plugins.commands.imglib.DuplicateImage: Returns the the input image to be sampled.
getInputRanges() - Method in class net.imagej.sampler.SamplingDefinition: Returns a multidimensional set of input axis values generated from the input data of this SamplingDefinition.
getInputStream() - Method in class net.imagej.updater.FilesUploader.DbXmlFile
getInputStream() - Method in interface net.imagej.updater.Uploadable
getInputStream() - Method in class net.imagej.updater.UploadableFile
getInputStream(InputStream, int) - Method in class net.imagej.updater.XMLFileDownloader
getInputType() - Method in class net.imagej.convert.ConvertIntArrayToFinalInterval
getInputType() - Method in class net.imagej.convert.ConvertListToFinalInterval
getInputType() - Method in class net.imagej.convert.ConvertLongArrayToFinalInterval
getInputType() - Method in class net.imagej.convert.ConvertRAIToIterableInterval
getInputType() - Method in class net.imagej.convert.DatasetToImgConverter
getInputType() - Method in class net.imagej.convert.DatasetToImgPlusConverter
getInputType() - Method in class net.imagej.convert.ImgLabelingToImgConverter
getInputType() - Method in class net.imagej.convert.ImgToImgLabelingConverter
getInputType() - Method in class net.imagej.legacy.convert.DatasetToImagePlusConverter
getInputType() - Method in class net.imagej.legacy.convert.DoubleToImagePlusConverter
getInputType() - Method in class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter
getInputType() - Method in class net.imagej.legacy.convert.ImagePlusToDatasetConverter
getInputType() - Method in class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter
getInputType() - Method in class net.imagej.legacy.convert.ImageTitleToImagePlusConverter
getInputType() - Method in class net.imagej.legacy.convert.OverlayToROITreeConverter
getInputType() - Method in class net.imagej.legacy.convert.ResultsTableToGenericTableConverter
getInputType() - Method in class net.imagej.legacy.convert.ResultsTableUnwrapper
getInputType() - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateUnwrapConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.AbstractRoiUnwrapConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.box.BoxToRoiConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.box.RoiToBoxConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.box.WritableBoxToRoiConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidToOvalRoiConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiToEllipsoidConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.WritableEllipsoidToOvalRoiConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.line.IJLineToLineConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.line.LineToIJLineConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.line.WritableLineToIJLineConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.point.PointMaskToPointRoiConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.point.PointRoiToRealPointCollectionConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionToPointRoiConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.point.WritablePointMaskToPointRoiConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.point.WritableRealPointCollectionToPointRoiConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DToPolygonRoiConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiToPolygon2DConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.WritablePolygon2DToPolygonRoiConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToPolylineConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToRealMaskRealIntervalConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineToPolylineRoiConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.polyline.WritablePolylineToPolylineRoiConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.RoiToMaskIntervalConverter
getInputType() - Method in class net.imagej.legacy.convert.roi.ShapeRoiToMaskRealIntervalConverter
getInputType() - Method in class net.imagej.legacy.convert.ROITreeToOverlayConverter
getInputType() - Method in class net.imagej.legacy.convert.StringToImagePlusConverter
getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.ByteTableToResultsTable
getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.FloatTableToResultsTable
getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.GenericTableToResultsTable
getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.IntTableToResultsTable
getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.LongTableToResultsTable
getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.ResultsTableToResultsTable
getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.ShortTableToResultsTable
getInputType() - Method in class net.imagej.legacy.convert.TableUnwrapper
getInputType() - Method in class net.imagej.matlab.DatasetMATLABConverter
getInputType() - Method in class net.imagej.matlab.MATLABDatasetConverter
getInputType() - Method in class net.imagej.notebook.mime.MIMEConverter
getInputType() - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
getInputType() - Method in class net.imagej.omero.legacy.convert.IJROIToOverlay
getInputType() - Method in class net.imagej.omero.legacy.convert.IJROIToROITree
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.DefaultRoiWrapperToMaskData
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.IJLineWrapperToLineData
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.IrregularPolylineRoiWrapperToMaskData
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.OvalRoiWrapperToEllipseData
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.PolygonRoiWrapperToPolygonData
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.PolylineRoiWrapperToPolylineData
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.RoiWrapperToRectangleData
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.ShapeRoiWrapperToMaskData
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.TextRoiWrapperToTextData
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.UnmodifiablePolylineRoiWrapperToPolylineData
getInputType() - Method in class net.imagej.omero.legacy.convert.MaskPredicateToOverlay
getInputType() - Method in class net.imagej.omero.legacy.convert.MaskPredicateToROITree
getInputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROEllipseToOvalRoi
getInputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROLineToIJLine
getInputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROMaskToImageRoi
getInputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPointToPointRoi
getInputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolygonToPolygonRoi
getInputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolylineToPolygonRoi
getInputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMERORectangleToRoi
getInputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROTextToTextRoi
getInputType() - Method in class net.imagej.omero.legacy.convert.OverlayToROITree
getInputType() - Method in class net.imagej.omero.legacy.convert.ROITreeToOverlay
getInputType() - Method in class net.imagej.omero.legacy.convert.TreeNodePointRoiWrapperToROIData
getInputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.OMEROMaskWrapperToOMEROMask
getInputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROEllipseToOMEROEllipse
getInputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROLineToOMEROLine
getInputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPointToOMEROPoint
getInputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolygonToOMEROPolygon
getInputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolylineToOMEROPolyline
getInputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMERORectangleToOMERORectangle
getInputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROTextToOMEROText
getInputType() - Method in class net.imagej.omero.legacy.text.OMEROTextUnwrapper
getInputType() - Method in class net.imagej.omero.legacy.text.OMEROToImageJText
getInputType() - Method in class net.imagej.omero.legacy.text.TextRoiToTextRoiWrapper
getInputType() - Method in class net.imagej.omero.roi.ellipse.ImageJToOMEROEllipse
getInputType() - Method in class net.imagej.omero.roi.ellipse.OMEROEllipseUnwrapper
getInputType() - Method in class net.imagej.omero.roi.ellipse.OMEROToImageJEllipse
getInputType() - Method in class net.imagej.omero.roi.line.ImageJToOMEROLine
getInputType() - Method in class net.imagej.omero.roi.line.OMEROLineUnwrapper
getInputType() - Method in class net.imagej.omero.roi.line.OMEROToImageJLine
getInputType() - Method in class net.imagej.omero.roi.mask.MaskIntervalToMaskData
getInputType() - Method in class net.imagej.omero.roi.mask.OMEROMaskUnwrapper
getInputType() - Method in class net.imagej.omero.roi.mask.OMEROToImageJMask
getInputType() - Method in class net.imagej.omero.roi.mask.RAIToMaskData
getInputType() - Method in class net.imagej.omero.roi.mask.RealMaskRealIntervalToMaskData
getInputType() - Method in class net.imagej.omero.roi.OMEROROICollectionToROIData
getInputType() - Method in class net.imagej.omero.roi.OMEROROIElementToROIData
getInputType() - Method in class net.imagej.omero.roi.point.ImageJToOMEROPoint
getInputType() - Method in class net.imagej.omero.roi.point.OMEROPointUnwrapper
getInputType() - Method in class net.imagej.omero.roi.point.OMEROToImageJPoint
getInputType() - Method in class net.imagej.omero.roi.point.TreeNodeRPCToROIData
getInputType() - Method in class net.imagej.omero.roi.polyshape.ImageJToOMEROPolygon
getInputType() - Method in class net.imagej.omero.roi.polyshape.ImageJToOMEROPolyline
getInputType() - Method in class net.imagej.omero.roi.polyshape.OMEROPolygonUnwrapper
getInputType() - Method in class net.imagej.omero.roi.polyshape.OMEROPolylineUnwrapper
getInputType() - Method in class net.imagej.omero.roi.polyshape.OMEROToImageJPolygon
getInputType() - Method in class net.imagej.omero.roi.polyshape.OMEROToImageJPolyline
getInputType() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMaskToShapeData
getInputType() - Method in class net.imagej.omero.roi.project.ProjectedOMERORealMaskToShapeData
getInputType() - Method in class net.imagej.omero.roi.rectangle.ImageJToOMERORectangle
getInputType() - Method in class net.imagej.omero.roi.rectangle.OMERORectangleUnwrapper
getInputType() - Method in class net.imagej.omero.roi.rectangle.OMEROToImageJRectangle
getInputType() - Method in class net.imagej.omero.roi.ROIDataToOMEROROICollection
getInputType() - Method in class net.imagej.omero.roi.transform.RealTransformUnaryCompositeRealMaskRealIntervalToShapeData
getInputType() - Method in class net.imagej.omero.roi.transform.ShapeDataToTransformedOMERORealMaskRealInterval
getInputType() - Method in class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealIntervalToShapeData
getInputType() - Method in class net.imagej.omero.roi.TreeNodeMaskPredicateToROIData
getInputType() - Method in class net.imagej.omero.roi.TreeNodeRAIToROIData
getInputType() - Method in class net.imagej.ops.geom.geom2d.LabelRegionToPolygonConverter
getInputType() - Method in class net.imagej.ops.geom.geom3d.mesh.RAIToMeshConverter
getInputType() - Method in class net.imagej.roi.MaskIntervalToRAIConverter
getInputType() - Method in class net.imagej.roi.MaskToRAConverter
getInputType() - Method in class net.imagej.roi.RAIToMaskIntervalConverter
getInputType() - Method in class net.imagej.roi.RAToMaskConverter
getInputType() - Method in class net.imagej.roi.RealMaskRealIntervalToRRARIConverter
getInputType() - Method in class net.imagej.roi.RealMaskToRRAConverter
getInputType() - Method in class net.imagej.roi.RRARIToRealMaskRealIntervalConverter
getInputType() - Method in class net.imagej.roi.RRAToRealMaskConverter
getInputType() - Method in class net.imagej.roi.Unwrappers.MaskAsRandomAccessibleUnwrapper
getInputType() - Method in class net.imagej.roi.Unwrappers.MaskIntervalAsRandomAccessibleIntervalUnwrapper
getInputType() - Method in class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper
getInputType() - Method in class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper
getInputType() - Method in class net.imagej.roi.Unwrappers.RealMaskAsRealRandomAccessibleUnwrapper
getInputType() - Method in class net.imagej.roi.Unwrappers.RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper
getInputType() - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper
getInputType() - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper
getInputType() - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.DoubleToDoubleTypeConverter
getInputType() - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.FloatToFloatTypeConverter
getInputType() - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.IntegerToIntTypeConverter
getInputType() - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.LongToLongTypeConverter
getInsets() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getInsets() - Method in class net.imagej.patcher.HeadlessGenericDialog
getInstalledVersions(File, Progress) - Static method in class net.imagej.updater.FilesCollection: Utility method for the Bug Submitter
getInstance() - Static method in class net.imagej.legacy.LegacyService: Returns the legacy service associated with the ImageJ 1.x instance in the current class loader.
getInstance() - Static method in class net.imagej.updater.CommandLine: Deprecated.
getInstances() - Method in interface net.imagej.types.DataTypeService: Returns a list of all DataTypes known to system.
getInstances() - Method in class net.imagej.types.DefaultDataTypeService
getInt(String, int) - Method in class net.imagej.matlab.ImageJMATLABPrefService
getInt(Class<?>, String, int) - Method in class net.imagej.matlab.ImageJMATLABPrefService
getInteger() - Method in class net.imagej.types.UnboundedIntegerType
getIntegerLong() - Method in class net.imagej.server.mixins.Mixins.IntegerTypeMixIn
getIntegerLong() - Method in class net.imagej.types.UnboundedIntegerType
getInterfaces() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
getInterpolationMethod() - Method in class net.imagej.plugins.commands.imglib.ResizeImage: Gets the interpolation method used to combine pixels.
getInterpolationMethod() - Method in class net.imagej.plugins.commands.imglib.ResliceImage: Gets the interpolation method used to combine pixels.
getInterpolationMethod() - Method in class net.imagej.plugins.commands.imglib.RotateImageXY: Gets the interpolation method used to combine pixels.
getInterpolationMethod() - Method in class net.imagej.plugins.commands.imglib.TranslateImage: Gets the interpolation method used to combine pixels.
getInterpreter() - Static method in class net.imagej.legacy.IJ1Helper: Returns the active macro Interpreter.
getIntPosition(AxisType) - Method in class net.imagej.display.AbstractDataView
getIntPosition(int) - Method in class net.imagej.display.AbstractDataView
getIntPosition(AxisType) - Method in class net.imagej.display.DefaultImageDisplay
getIntPosition(int) - Method in class net.imagej.display.DefaultImageDisplay
getIntPosition(int) - Method in class net.imagej.ops.image.integral.IntegralCursor
getIntPosition(int) - Method in class net.imagej.Position: Gets the current Position's i'th coordinate as an int
getIntPosition(AxisType) - Method in interface net.imagej.PositionableByAxis: Returns the current position in a given dimension.
getIterable() - Method in interface net.imagej.ui.swing.updater.ViewOptions.CustomOption
getIterationsPerCycle() - Method in class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning
getIterationsPerCycle() - Method in class net.imagej.ops.morphology.thin.GuoHallThinningStrategy
getIterationsPerCycle() - Method in class net.imagej.ops.morphology.thin.MorphologicalThinningStrategy
getIterationsPerCycle() - Method in interface net.imagej.ops.morphology.thin.ThinningStrategy: Returns the minimum number of iterations necessary for the algorithm to run.
getJarDigest(File) - Static method in class net.imagej.updater.util.UpdaterUtil
getJarDigest(File, boolean, boolean) - Static method in class net.imagej.updater.util.UpdaterUtil
getJarDigest(File, boolean, boolean, boolean) - Static method in class net.imagej.updater.util.UpdaterUtil
getJarPath(ClassLoader, String) - Static method in class net.imagej.launcher.ClassLoaderPlus
getJobInfo() - Method in class net.imagej.omero.ModuleAdapter: Converts ImageJ module metadata to OMERO job metadata.
getJobParam(ModuleItem<?>) - Method in class net.imagej.omero.DefaultOMEROService
getJobParam(ModuleItem<?>) - Method in interface net.imagej.omero.OMEROService: Converts an ImageJ module parameter to an OMERO job parameter.
getJpegQuality() - Method in class net.imagej.options.OptionsInputOutput
getJustification() - Method in class net.imagej.overlay.TextOverlay
getJvmArgs() - Method in class net.imagej.config.ConfigFileParameters: Gets the value associated with the "jvmargs" key in the launcher configuration file.
getLabel() - Method in interface net.imagej.axis.AxisType
getLabel() - Method in class net.imagej.axis.DefaultAxisType
getLabel() - Method in enum net.imagej.display.ColorMode
getLabel() - Method in class net.imagej.ops.OpRef: Gets a label identifying the op's scope (i.e., its name and/or types).
getLabel() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
getLabel(FilesCollection, Iterable<FileObject>) - Method in class net.imagej.updater.action.InstallOrUpdate
getLabel(FilesCollection, Iterable<FileObject>) - Method in class net.imagej.updater.action.KeepAsIs
getLabel(FilesCollection, Iterable<FileObject>) - Method in class net.imagej.updater.action.Remove
getLabel(FilesCollection, Iterable<FileObject>) - Method in class net.imagej.updater.action.Uninstall
getLabel(FilesCollection, Iterable<FileObject>) - Method in class net.imagej.updater.action.Upload
getLabel(FilesCollection, Iterable<FileObject>) - Method in interface net.imagej.updater.GroupAction
getLabels() - Static method in enum net.imagej.display.ColorMode
getLanguageName() - Method in class net.imagej.legacy.plugin.MacroLanguageSupportPlugin
getLast() - Method in class net.imagej.animation.Animation
getLast() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
getLastBgColor() - Method in class net.imagej.options.OptionsChannels
getLastFgColor() - Method in class net.imagej.options.OptionsChannels
getLastModified(String) - Static method in class net.imagej.updater.UpToDate
getLastModified() - Method in class net.imagej.updater.util.Downloader
getLastModified(String) - Static method in class net.imagej.updater.util.UpdaterUtil: Deprecated.
getLastModified(URL) - Method in class net.imagej.updater.util.UpdaterUtil
getLastUsed() - Method in class net.imagej.server.services.DefaultObjectInfo
getLastUsed() - Method in interface net.imagej.server.services.ObjectInfo: Gets the timestamp when the object is last used in module execution
getLegacyClassName() - Method in class net.imagej.legacy.command.LegacyCommandInfo: Gets the name of the class backing this legacy command.
getLegacyContext() - Static method in class net.imagej.legacy.IJ1Helper: Gets the SciJava application context linked to the ImageJ 1.x instance.
getLegacyRoiId() - Method in class net.imagej.omero.legacy.LegacyOMEROROIService: Return a unique ID for identify Rois.
getLegacyService() - Method in class net.imagej.legacy.ui.AbstractLegacyAdapter
getLibDir(String) - Static method in class net.imagej.tensorflow.util.TensorFlowUtil
getLineColor() - Method in class net.imagej.options.OptionsOverlay
getLineColor() - Method in class net.imagej.overlay.AbstractOverlay
getLineColor() - Method in interface net.imagej.overlay.Overlay
getLineColor() - Method in class net.imagej.overlay.OverlaySettings
getLineColor() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
getLineEnd(double[]) - Method in class net.imagej.overlay.LineOverlay
getLineEnd(int) - Method in class net.imagej.overlay.LineOverlay
getLineEndArrowStyle() - Method in class net.imagej.overlay.AbstractOverlay
getLineEndArrowStyle() - Method in interface net.imagej.overlay.Overlay
getLineIntercept() - Method in class net.imagej.widget.HistogramBundle: Gets the line equation intercept.
getLineSlope() - Method in class net.imagej.widget.HistogramBundle: Gets the line equation slope.
getLineStart(double[]) - Method in class net.imagej.overlay.LineOverlay
getLineStart(int) - Method in class net.imagej.overlay.LineOverlay
getLineStartArrowStyle() - Method in class net.imagej.overlay.AbstractOverlay
getLineStartArrowStyle() - Method in interface net.imagej.overlay.Overlay
getLineStyle() - Method in class net.imagej.options.OptionsOverlay
getLineStyle() - Method in class net.imagej.overlay.AbstractOverlay
getLineStyle() - Method in interface net.imagej.overlay.Overlay: Get the style of the outline line
getLineStyle() - Method in class net.imagej.overlay.OverlaySettings
getLineStyle() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
getLineWidth() - Method in class net.imagej.DrawingTool: Gets the current drawing line width.
getLineWidth() - Method in class net.imagej.options.OptionsLineWidth
getLineWidth() - Method in class net.imagej.options.OptionsOverlay
getLineWidth() - Method in class net.imagej.overlay.AbstractOverlay
getLineWidth() - Method in interface net.imagej.overlay.Overlay
getLineWidth() - Method in class net.imagej.overlay.OverlaySettings
getLineWidth() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
getLineWidth() - Method in class net.imagej.plugins.tools.AbstractLineTool: Gets the drawing width for lines (in pixels).
getLinks() - Method in class net.imagej.updater.FileObject
getList(String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
getList(Class<?>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
getList(Class<?>) - Method in class net.imagej.matlab.ImageJMATLABPrefService
getLocalFilename(boolean) - Method in class net.imagej.updater.FileObject
getLocation() - Method in class net.imagej.legacy.command.LegacyCommandInfo
getLocationX() - Method in class net.imagej.legacy.ui.LegacyApplicationFrame
getLocationY() - Method in class net.imagej.legacy.ui.LegacyApplicationFrame
getLog() - Method in class net.imagej.updater.FilesUploader
getLogService() - Static method in class net.imagej.updater.util.UpdaterUtil: Get a log service.
getLong(String, long) - Method in class net.imagej.matlab.ImageJMATLABPrefService
getLong(Class<?>, String, long) - Method in class net.imagej.matlab.ImageJMATLABPrefService
getLongPosition(AxisType) - Method in class net.imagej.display.AbstractDataView
getLongPosition(int) - Method in class net.imagej.display.AbstractDataView
getLongPosition(AxisType) - Method in class net.imagej.display.DefaultDatasetView
getLongPosition(AxisType) - Method in class net.imagej.display.DefaultImageDisplay
getLongPosition(int) - Method in class net.imagej.display.DefaultImageDisplay
getLongPosition(int) - Method in class net.imagej.ops.image.integral.IntegralCursor
getLongPosition(int) - Method in class net.imagej.Position: Gets the current Position's i'th coordinate as a long
getLongPosition(AxisType) - Method in interface net.imagej.PositionableByAxis: Returns the current position in a given dimension.
getLongUpdateSiteName(String) - Method in class net.imagej.updater.CommandLine
getLoopCount() - Method in class net.imagej.ops.loop.DefaultLoopComputer
getLoopCount() - Method in class net.imagej.ops.loop.DefaultLoopInplace
getLoopCount() - Method in interface net.imagej.ops.loop.LoopOp
getLowerTailProportion() - Method in class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod: Returns the fractional proportion of the distribution to count as in lower tail.
getM() - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment
getMacroParameter(String, boolean) - Method in class net.imagej.legacy.IJ1Helper: Gets a macro parameter of type boolean.
getMacroParameter(String, double) - Method in class net.imagej.legacy.IJ1Helper: Gets a macro parameter of type double.
getMacroParameter(String, String) - Method in class net.imagej.legacy.IJ1Helper: Gets a macro parameter of type String.
getMacroParameter(String) - Method in class net.imagej.legacy.IJ1Helper: Gets a macro parameter of type String.
getMagnitude() - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment
getMaintainer() - Method in class net.imagej.updater.UpdateSite
getMap(String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
getMap(Class<?>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
getMap(Class<?>) - Method in class net.imagej.matlab.ImageJMATLABPrefService
getMarkWidth() - Method in class net.imagej.options.OptionsPointTool
getMax() - Method in class net.imagej.autoscale.DataRange: Returns the largest end point of the data range.
getMax() - Method in class net.imagej.minmax.DefaultMinMaxMethod
getMax() - Method in interface net.imagej.minmax.MinMaxMethod
getMaxBin() - Method in class net.imagej.widget.HistogramBundle: Gets the bin number of the maximum value.
getMaxCoords(RandomAccessibleInterval<DoubleType>, boolean) - Static method in class net.imagej.ops.segment.detectRidges.RidgeDetectionUtils
getMaximum() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
getMaximumDistanceVertex() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet: The vertex which is in front and farthest apart of the plane
getMaximumValue() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
getMaximumVesselness() - Method in class net.imagej.ops.filter.vesselness.DefaultFrangi
getMaxIterations() - Method in class net.imagej.ops.filter.AbstractIterativeFFTFilterC
getMaxMemory() - Method in class net.imagej.options.OptionsMemoryAndThreads: Returns the number of megabytes of memory that should be allocated for use by ImageJ.
getMaxThreads() - Method in class net.imagej.ops.CustomOpEnvironment
getMaxThreads() - Method in class net.imagej.ops.DefaultOpService
getMaxThreads() - Method in interface net.imagej.ops.OpEnvironment: Gets the maximum number of threads any single op is allowed to use.
getMaxValue() - Method in class net.imagej.types.PreciseFixedFloatType
getMaxValue() - Method in class net.imagej.types.UnboundedIntegerType
getMaxY() - Method in class net.imagej.options.OptionsProfilePlot
getMemoryInMB() - Method in class net.imagej.config.ConfigFileParameters: Returns the value of the number of megabytes of ram to allocate that is specified in the launcher config file.
getMenuBar() - Method in class net.imagej.legacy.IJ1Helper
getMenuFontSize() - Method in class net.imagej.options.OptionsAppearance
getMenuService() - Method in class net.imagej.display.DefaultWindowService
getMenuService() - Method in interface net.imagej.display.WindowService
getMenuStructure() - Method in class imagej.patcher.LegacyEnvironment: Deprecated.

Gets the ImageJ 1.x menu structure as a map
getMenuStructure() - Method in class imagej.patcher.LegacyHooks: Deprecated.

Returns ImageJ 1.x' menu structure as a map.
getMenuStructure() - Method in class net.imagej.patcher.LegacyEnvironment: Gets the ImageJ 1.x menu structure as a map
getMenuStructure() - Method in class net.imagej.patcher.LegacyHooks: Returns ImageJ 1.x' menu structure as a map.
getMessage() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getMessage() - Method in class net.imagej.patcher.HeadlessGenericDialog
getMimetype(String) - Static method in class net.imagej.server.Utils
getMin() - Method in class net.imagej.autoscale.DataRange: Returns the smallest end point of the data range.
getMin() - Method in class net.imagej.minmax.DefaultMinMaxMethod
getMin() - Method in interface net.imagej.minmax.MinMaxMethod
getMinBin() - Method in class net.imagej.widget.HistogramBundle: Gets the bin number of the minimum value.
getMinimum() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
getMinimumSize() - Method in class net.imagej.ui.swing.SwingColorBar
getMinimumValue() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
getMinimumVesselness() - Method in class net.imagej.ops.filter.vesselness.DefaultFrangi
getMinIncrement() - Method in class net.imagej.types.PreciseFixedFloatType
getMinIncrement() - Method in class net.imagej.types.UnboundedIntegerType
getMinValue() - Method in class net.imagej.types.PreciseFixedFloatType
getMinValue() - Method in class net.imagej.types.UnboundedIntegerType
getMinY() - Method in class net.imagej.options.OptionsProfilePlot
getMode() - Method in class net.imagej.options.OptionsWandTool
getModule() - Method in class net.imagej.ops.OpCandidate: Gets the module instance associated with the attempted match.
getModuleService() - Method in class net.imagej.display.DefaultWindowService
getModuleService() - Method in interface net.imagej.display.WindowService
getN() - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment
getName() - Method in class net.imagej.AbstractData
getName() - Method in class net.imagej.DefaultDataset
getName() - Method in class net.imagej.ImgPlus
getName() - Method in class net.imagej.omero.OMEROFormat.Metadata
getName() - Method in class net.imagej.ops.coloc.ColocNamespace
getName() - Method in class net.imagej.ops.convert.ConvertNamespace
getName() - Method in class net.imagej.ops.copy.CopyNamespace
getName() - Method in class net.imagej.ops.create.CreateNamespace
getName() - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
getName() - Method in class net.imagej.ops.features.haralick.HaralickNamespace
getName() - Method in class net.imagej.ops.features.hog.HogNamespace
getName() - Method in class net.imagej.ops.features.lbp2d.LBPNamespace
getName() - Method in class net.imagej.ops.features.tamura2d.TamuraNamespace
getName() - Method in class net.imagej.ops.features.zernike.ZernikeNamespace
getName() - Method in class net.imagej.ops.filter.FilterNamespace
getName() - Method in class net.imagej.ops.geom.GeomNamespace
getName() - Method in class net.imagej.ops.image.ImageNamespace
getName() - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
getName() - Method in class net.imagej.ops.labeling.LabelingNamespace
getName() - Method in class net.imagej.ops.linalg.LinAlgNamespace
getName() - Method in class net.imagej.ops.logic.LogicNamespace
getName() - Method in class net.imagej.ops.math.MathNamespace
getName() - Method in class net.imagej.ops.morphology.MorphologyNamespace
getName() - Method in class net.imagej.ops.OpInfo: Gets the fully qualified name, with namespace.
getName() - Method in class net.imagej.ops.OpRef: Gets the name of the op.
getName() - Method in class net.imagej.ops.segment.SegmentNamespace
getName() - Method in class net.imagej.ops.stats.StatsNamespace
getName() - Method in class net.imagej.ops.thread.ThreadNamespace
getName() - Method in class net.imagej.ops.threshold.ThresholdNamespace
getName() - Method in class net.imagej.ops.topology.TopologyNamespace
getName() - Method in class net.imagej.ops.transform.TransformNamespace
getName() - Method in class net.imagej.plugins.commands.io.NewImage
getName() - Method in class net.imagej.server.ImageJServer
getName() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
getName() - Method in class net.imagej.updater.UpdateSite
getNames() - Method in class net.imagej.legacy.plugin.IJ1MacroLanguage
getNamespace() - Method in class net.imagej.ops.OpInfo: Gets the namespace.
getNamespace(String) - Static method in class net.imagej.ops.OpUtils: Gets the namespace portion of the given op name.
getNanos() - Static method in class net.imagej.patcher.PerformanceProfiler: Gets nanoseconds per thread for relative time measurements
getNanosQnD() - Static method in class net.imagej.patcher.PerformanceProfiler: A much faster, but less accurate version of PerformanceProfiler.getNanos() The problem with this is that it does not measure the current Thread's CPU cycles.
getNativeVersionFile(String) - Static method in class net.imagej.tensorflow.util.TensorFlowUtil
getNegativeX() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
getNegativeY() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
getNeighborhood() - Method in class net.imagej.plugins.commands.assign.noisereduce.RadialNeighborhoodSpecifier
getNeighborhood() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
getNeighborhoodType() - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
getNeighbourhood(RandomAccess<BitType>) - Method in class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning: Returns all booleans in a 3x3 neighbourhood of the pixel the RandomAccess points to.
getNewAxisIndex(int) - Method in class net.imagej.plugins.commands.restructure.ReorderData: Gets newAxes[index] which is the position within existing Dataset's axes.
getNewURL() - Method in class net.imagej.updater.URLChange
getNextBoolean() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getNextBoolean() - Method in class net.imagej.patcher.HeadlessGenericDialog
getNextChoice() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getNextChoice() - Method in class net.imagej.patcher.HeadlessGenericDialog
getNextChoiceIndex() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getNextChoiceIndex() - Method in class net.imagej.patcher.HeadlessGenericDialog
getNextImage() - Method in class net.imagej.patcher.HeadlessGenericDialog
getNextNumber() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getNextNumber() - Method in class net.imagej.patcher.HeadlessGenericDialog
getNextRadioButton() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.

Returns the selected item in the next radio button group.
getNextRadioButton() - Method in class net.imagej.patcher.HeadlessGenericDialog: Returns the selected item in the next radio button group.
getNextString() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.

Returns the contents of the next text field.
getNextString() - Method in class net.imagej.patcher.HeadlessGenericDialog: Returns the contents of the next text field.
getNextText() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getNextText() - Method in class net.imagej.patcher.HeadlessGenericDialog
getNoAction() - Method in enum net.imagej.updater.FileObject.Status
getNormal() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet: Get the normal of this facet.
getNumericFields() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getNumericFields() - Method in class net.imagej.patcher.HeadlessGenericDialog
getNumThreads() - Method in class net.imagej.minmax.DefaultMinMaxMethod
getNumThreads() - Method in interface net.imagej.minmax.MinMaxMethod
getNValues() - Method in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata: returns the nValue image
getNValuesRandomAccess() - Method in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata: returns the nValue image's RandomAccess
getObf() - Method in class net.imagej.ops.filter.pad.PadInputFFT
getOBFInput() - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter
getOBFKernel() - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter
getObject() - Method in class net.imagej.event.DataCreatedEvent
getObject() - Method in class net.imagej.event.DataDeletedEvent
getObject() - Method in class net.imagej.event.DataModifiedEvent
getObject() - Method in class net.imagej.event.DatasetCreatedEvent
getObject() - Method in class net.imagej.event.DatasetDeletedEvent
getObject() - Method in class net.imagej.event.DatasetRestructuredEvent
getObject() - Method in class net.imagej.event.DatasetUpdatedEvent
getObject() - Method in class net.imagej.event.OverlayCreatedEvent
getObject() - Method in class net.imagej.event.OverlayDeletedEvent
getObject() - Method in class net.imagej.event.OverlayRestructuredEvent
getObject() - Method in class net.imagej.event.OverlayUpdatedEvent
getObject(String, String, UriInfo) - Method in class net.imagej.server.resources.ObjectsResource: Retrieves an object in a specific format.
getObject() - Method in class net.imagej.server.services.DefaultObjectInfo
getObject() - Method in interface net.imagej.server.services.ObjectInfo
getObjectClass() - Method in interface net.imagej.server.services.ObjectInfo
getObjectInfo(String) - Method in class net.imagej.server.resources.ObjectsResource: Shows the information of an object.
getObjectService() - Method in interface net.imagej.DatasetService
getObjectService() - Method in class net.imagej.DefaultDatasetService
getObjectService() - Method in class net.imagej.display.DefaultOverlayService
getObjectService() - Method in interface net.imagej.display.OverlayService
getObsoleteDigests(String, File) - Static method in class net.imagej.updater.util.UpdaterUtil: Handle previous methods to calculate the checksums gracefully Earlier, we simply checksummed all the contents in .jar files.
getOctant(double, double) - Static method in class net.imagej.ops.segment.detectRidges.RidgeDetectionUtils: This method determines the octant (neighboring pixel) a vector points towards in pixel space.
getOctantCoords(int) - Static method in class net.imagej.ops.segment.detectRidges.RidgeDetectionUtils: Creates the modifier array for the octants.
getOMERORef() - Method in class net.imagej.omero.OMERORefColumn
getOp() - Method in class net.imagej.ops.loop.DefaultLoopComputer
getOp() - Method in class net.imagej.ops.loop.DefaultLoopInplace
getOp() - Method in interface net.imagej.ops.loop.LoopOp
getOp() - Method in class net.imagej.ops.map.AbstractMapBinaryComputer
getOp() - Method in class net.imagej.ops.map.AbstractMapBinaryInplace
getOp() - Method in class net.imagej.ops.map.AbstractMapBinaryInplace1
getOp() - Method in class net.imagej.ops.map.AbstractMapComputer
getOp() - Method in class net.imagej.ops.map.AbstractMapInplace
getOp() - Method in class net.imagej.ops.map.AbstractMapNullaryComputer
getOp() - Method in class net.imagej.ops.map.AbstractMapView
getOp() - Method in interface net.imagej.ops.map.MapOp
getOp() - Method in class net.imagej.ops.map.neighborhood.AbstractMapNeighborhood
getOpenWindows() - Method in class net.imagej.display.DefaultWindowService
getOpenWindows() - Method in interface net.imagej.display.WindowService: Gets the list of window files.
getOperation() - Method in class net.imagej.plugins.commands.assign.AddToDataValues
getOperation() - Method in class net.imagej.plugins.commands.assign.AndDataValuesWith
getOperation() - Method in class net.imagej.plugins.commands.assign.DivideDataValuesBy
getOperation() - Method in class net.imagej.plugins.commands.assign.GammaDataValues
getOperation() - Method in class net.imagej.plugins.commands.assign.MathCommand
getOperation() - Method in class net.imagej.plugins.commands.assign.MaxDataValues
getOperation() - Method in class net.imagej.plugins.commands.assign.MinDataValues
getOperation() - Method in class net.imagej.plugins.commands.assign.MultiplyDataValuesBy
getOperation() - Method in class net.imagej.plugins.commands.assign.OrDataValuesWith
getOperation() - Method in class net.imagej.plugins.commands.assign.PowerDataValues
getOperation() - Method in class net.imagej.plugins.commands.assign.SetDataValues
getOperation() - Method in class net.imagej.plugins.commands.assign.SubtractFromDataValues
getOperation() - Method in class net.imagej.plugins.commands.assign.XorDataValuesWith
getOperation() - Method in class net.imagej.plugins.commands.calculator.ImageCalculator: Returns the CalculatorOp that was used in the image calculation.
getOpMap() - Method in class net.imagej.ops.eval.OpEvaluator: Gets the map of Operator to op names backing this evaluator.
getOpName(Operator) - Method in class net.imagej.ops.eval.OpEvaluator: Gets the op name associated with the given Operator.
getOpName(CommandInfo) - Static method in class net.imagej.ops.OpUtils: Gets the string name of an op.
getOps() - Method in class net.imagej.ops.join.DefaultJoinNComputers
getOps() - Method in class net.imagej.ops.join.DefaultJoinNInplaces
getOps() - Method in interface net.imagej.ops.join.JoinNOps
getOptions() - Method in class net.imagej.legacy.IJ1Helper: Delegates to ImageJ 1.x' Macro.getOptions() function.
getOrder() - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionContraharmonicMean
getOrder() - Method in class net.imagej.plugins.commands.restructure.ReorderAxis: Sets the current specified ordering of planes along an axis.
getOrigin(int) - Method in class net.imagej.overlay.EllipseOverlay
getOrigin(int) - Method in class net.imagej.overlay.RectangleOverlay
getOriginalData() - Method in class net.imagej.omero.OMERORefColumn
getOutput() - Method in class net.imagej.ops.geom.geom3d.mesh.AbstractVertexInterpolator
getOutput() - Method in interface net.imagej.ops.geom.geom3d.mesh.VertexInterpolator
getOutput() - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
getOutput() - Method in class net.imagej.plugins.commands.calculator.ImageCalculator: Returns the output Dataset of the image calculation.
getOutput() - Method in class net.imagej.plugins.commands.display.CaptureImage
getOutput() - Method in class net.imagej.plugins.commands.display.CaptureScreen
getOutput() - Method in class net.imagej.plugins.commands.display.Flatten
getOutput() - Method in class net.imagej.plugins.commands.display.ShowLUT
getOutput() - Method in class net.imagej.plugins.commands.overlay.ConvertToMask
getOutputAxes() - Method in class net.imagej.sampler.SamplingDefinition: Returns the set of AxisTypes that will be present in the output data.
getOutputCalibratedAxes() - Method in class net.imagej.sampler.SamplingDefinition: Returns the set of CalibratedAxis's that will be present in the output data.
getOutputCalibration(AxisType[]) - Method in class net.imagej.sampler.SamplingDefinition: Deprecated.
getOutputDims() - Method in class net.imagej.sampler.SamplingDefinition: Returns the dimensions that will be present in the output data.
getOutputDisplay() - Method in class net.imagej.plugins.commands.imglib.DuplicateImage: The output image resulting after executing the run() method.
getOutputFactory() - Method in interface net.imagej.ops.join.BufferFactory
getOutputFactory() - Method in class net.imagej.ops.join.DefaultJoin2Computers
getOutputFactory() - Method in class net.imagej.ops.join.DefaultJoinNComputers
getOutputFactory() - Method in class net.imagej.ops.loop.DefaultLoopComputer
getOutputFactory() - Method in interface net.imagej.ops.loop.LoopComputer
getOutputStream() - Method in class net.imagej.ui.swing.updater.SwingUserInterface
getOutputStream() - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
getOutputStream() - Method in class net.imagej.updater.util.UpdaterUserInterface
getOutputStream() - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
getOutputType() - Method in class net.imagej.convert.ConvertIntArrayToFinalInterval
getOutputType() - Method in class net.imagej.convert.ConvertListToFinalInterval
getOutputType() - Method in class net.imagej.convert.ConvertLongArrayToFinalInterval
getOutputType() - Method in class net.imagej.convert.ConvertRAIToIterableInterval
getOutputType() - Method in class net.imagej.convert.DatasetToImgConverter
getOutputType() - Method in class net.imagej.convert.DatasetToImgPlusConverter
getOutputType() - Method in class net.imagej.convert.ImgLabelingToImgConverter
getOutputType() - Method in class net.imagej.convert.ImgToImgLabelingConverter
getOutputType() - Method in class net.imagej.legacy.convert.DatasetToImagePlusConverter
getOutputType() - Method in class net.imagej.legacy.convert.DoubleToImagePlusConverter
getOutputType() - Method in class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter
getOutputType() - Method in class net.imagej.legacy.convert.ImagePlusToDatasetConverter
getOutputType() - Method in class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter
getOutputType() - Method in class net.imagej.legacy.convert.ImageTitleToImagePlusConverter
getOutputType() - Method in class net.imagej.legacy.convert.OverlayToROITreeConverter
getOutputType() - Method in class net.imagej.legacy.convert.ResultsTableToGenericTableConverter
getOutputType() - Method in class net.imagej.legacy.convert.ResultsTableUnwrapper
getOutputType() - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.box.BoxToRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.box.RoiToBoxConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.box.WritableBoxToRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidToOvalRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiToEllipsoidConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.WritableEllipsoidToOvalRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.line.IJLineToLineConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.line.LineToIJLineConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.line.WritableLineToIJLineConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableBoxConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableEllipsoid
getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableLine
getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePointMask
getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePolygon2D
getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePolyline
getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableRealPointCollection
getOutputType() - Method in class net.imagej.legacy.convert.roi.point.PointMaskToPointRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.point.PointRoiToRealPointCollectionConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionToPointRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.point.WritablePointMaskToPointRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.point.WritableRealPointCollectionToPointRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DToPolygonRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiToPolygon2DConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.WritablePolygon2DToPolygonRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToPolylineConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToRealMaskRealIntervalConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineToPolylineRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.polyline.WritablePolylineToPolylineRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiToMaskIntervalConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToEllipseRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToLineConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToOvalRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToPointRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToPolygonRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToRotatedRectRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToShapeRoiConverter
getOutputType() - Method in class net.imagej.legacy.convert.roi.ShapeRoiToMaskRealIntervalConverter
getOutputType() - Method in class net.imagej.legacy.convert.ROITreeToOverlayConverter
getOutputType() - Method in class net.imagej.legacy.convert.StringToImagePlusConverter
getOutputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.AbstractTableToResultsTableConverter
getOutputType() - Method in class net.imagej.legacy.convert.TableUnwrapper
getOutputType() - Method in class net.imagej.matlab.DatasetMATLABConverter
getOutputType() - Method in class net.imagej.matlab.MATLABDatasetConverter
getOutputType() - Method in class net.imagej.notebook.mime.MIMEConverter
getOutputType() - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJROIToOverlay
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJROIToROITree
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.DefaultRoiWrapperToMaskData
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.IJLineWrapperToLineData
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.IrregularPolylineRoiWrapperToMaskData
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.OvalRoiWrapperToEllipseData
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.PolygonRoiWrapperToPolygonData
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.PolylineRoiWrapperToPolylineData
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.RoiWrapperToRectangleData
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.ShapeRoiWrapperToMaskData
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.TextRoiWrapperToTextData
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.UnmodifiablePolylineRoiWrapperToPolylineData
getOutputType() - Method in class net.imagej.omero.legacy.convert.MaskPredicateToOverlay
getOutputType() - Method in class net.imagej.omero.legacy.convert.MaskPredicateToROITree
getOutputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROEllipseToOvalRoi
getOutputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROLineToIJLine
getOutputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROMaskToImageRoi
getOutputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPointToPointRoi
getOutputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolygonToPolygonRoi
getOutputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolylineToPolygonRoi
getOutputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMERORectangleToRoi
getOutputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROTextToTextRoi
getOutputType() - Method in class net.imagej.omero.legacy.convert.OverlayToROITree
getOutputType() - Method in class net.imagej.omero.legacy.convert.ROITreeToOverlay
getOutputType() - Method in class net.imagej.omero.legacy.convert.TreeNodePointRoiWrapperToROIData
getOutputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.OMEROMaskWrapperToOMEROMask
getOutputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROEllipseToOMEROEllipse
getOutputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROLineToOMEROLine
getOutputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPointToOMEROPoint
getOutputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolygonToOMEROPolygon
getOutputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolylineToOMEROPolyline
getOutputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMERORectangleToOMERORectangle
getOutputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROTextToOMEROText
getOutputType() - Method in class net.imagej.omero.legacy.text.OMEROTextUnwrapper
getOutputType() - Method in class net.imagej.omero.legacy.text.OMEROToImageJText
getOutputType() - Method in class net.imagej.omero.legacy.text.TextRoiToTextRoiWrapper
getOutputType() - Method in class net.imagej.omero.legacy.text.TextRoiUnwrapper
getOutputType() - Method in class net.imagej.omero.roi.AbstractTreeNodeToROIData
getOutputType() - Method in class net.imagej.omero.roi.ellipse.ImageJToOMEROEllipse
getOutputType() - Method in class net.imagej.omero.roi.ellipse.OMEROEllipseUnwrapper
getOutputType() - Method in class net.imagej.omero.roi.ellipse.OMEROToImageJEllipse
getOutputType() - Method in class net.imagej.omero.roi.line.ImageJToOMEROLine
getOutputType() - Method in class net.imagej.omero.roi.line.OMEROLineUnwrapper
getOutputType() - Method in class net.imagej.omero.roi.line.OMEROToImageJLine
getOutputType() - Method in class net.imagej.omero.roi.mask.MaskIntervalToMaskData
getOutputType() - Method in class net.imagej.omero.roi.mask.OMEROMaskUnwrapper
getOutputType() - Method in class net.imagej.omero.roi.mask.OMEROToImageJMask
getOutputType() - Method in class net.imagej.omero.roi.mask.RAIToMaskData
getOutputType() - Method in class net.imagej.omero.roi.mask.RealMaskRealIntervalToMaskData
getOutputType() - Method in class net.imagej.omero.roi.OMEROROICollectionToROIData
getOutputType() - Method in class net.imagej.omero.roi.OMEROROIElementToROIData
getOutputType() - Method in class net.imagej.omero.roi.point.ImageJToOMEROPoint
getOutputType() - Method in class net.imagej.omero.roi.point.OMEROPointUnwrapper
getOutputType() - Method in class net.imagej.omero.roi.point.OMEROToImageJPoint
getOutputType() - Method in class net.imagej.omero.roi.point.TreeNodeRPCToROIData
getOutputType() - Method in class net.imagej.omero.roi.polyshape.ImageJToOMEROPolygon
getOutputType() - Method in class net.imagej.omero.roi.polyshape.ImageJToOMEROPolyline
getOutputType() - Method in class net.imagej.omero.roi.polyshape.OMEROPolygonUnwrapper
getOutputType() - Method in class net.imagej.omero.roi.polyshape.OMEROPolylineUnwrapper
getOutputType() - Method in class net.imagej.omero.roi.polyshape.OMEROToImageJPolygon
getOutputType() - Method in class net.imagej.omero.roi.polyshape.OMEROToImageJPolyline
getOutputType() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMaskToShapeData
getOutputType() - Method in class net.imagej.omero.roi.project.ProjectedOMERORealMaskToShapeData
getOutputType() - Method in class net.imagej.omero.roi.rectangle.ImageJToOMERORectangle
getOutputType() - Method in class net.imagej.omero.roi.rectangle.OMERORectangleUnwrapper
getOutputType() - Method in class net.imagej.omero.roi.rectangle.OMEROToImageJRectangle
getOutputType() - Method in class net.imagej.omero.roi.ROIDataToOMEROROICollection
getOutputType() - Method in class net.imagej.omero.roi.transform.RealTransformUnaryCompositeRealMaskRealIntervalToShapeData
getOutputType() - Method in class net.imagej.omero.roi.transform.ShapeDataToTransformedOMERORealMaskRealInterval
getOutputType() - Method in class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealIntervalToShapeData
getOutputType() - Method in class net.imagej.ops.geom.geom2d.LabelRegionToPolygonConverter
getOutputType() - Method in class net.imagej.ops.geom.geom3d.mesh.RAIToMeshConverter
getOutputType() - Method in class net.imagej.roi.MaskIntervalToRAIConverter
getOutputType() - Method in class net.imagej.roi.MaskToRAConverter
getOutputType() - Method in class net.imagej.roi.RAIToMaskIntervalConverter
getOutputType() - Method in class net.imagej.roi.RAToMaskConverter
getOutputType() - Method in class net.imagej.roi.RealMaskRealIntervalToRRARIConverter
getOutputType() - Method in class net.imagej.roi.RealMaskToRRAConverter
getOutputType() - Method in class net.imagej.roi.RRARIToRealMaskRealIntervalConverter
getOutputType() - Method in class net.imagej.roi.RRAToRealMaskConverter
getOutputType() - Method in class net.imagej.roi.Unwrappers.MaskAsRandomAccessibleUnwrapper
getOutputType() - Method in class net.imagej.roi.Unwrappers.MaskIntervalAsRandomAccessibleIntervalUnwrapper
getOutputType() - Method in class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper
getOutputType() - Method in class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper
getOutputType() - Method in class net.imagej.roi.Unwrappers.RealMaskAsRealRandomAccessibleUnwrapper
getOutputType() - Method in class net.imagej.roi.Unwrappers.RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper
getOutputType() - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper
getOutputType() - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper
getOutputType() - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.DoubleToDoubleTypeConverter
getOutputType() - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.FloatToFloatTypeConverter
getOutputType() - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.IntegerToIntTypeConverter
getOutputType() - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.LongToLongTypeConverter
getOutType() - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter
getOutTypes() - Method in class net.imagej.ops.OpRef: Gets the op's output types (one constraint per output), or null for no constraints.
getOverlay() - Method in class net.imagej.display.OverlayInfo
getOverlay() - Method in class net.imagej.plugins.commands.assign.FillDataValues
getOverlayInfo() - Method in class net.imagej.display.DefaultOverlayService
getOverlayInfo(int) - Method in class net.imagej.display.OverlayInfoList
getOverlayInfo() - Method in interface net.imagej.display.OverlayService: Returns the overlay info list associated with this service.
getOverlayInfoCount() - Method in class net.imagej.display.OverlayInfoList
getOverlays() - Method in class net.imagej.display.DefaultOverlayService
getOverlays(ImageDisplay, boolean) - Method in class net.imagej.display.DefaultOverlayService
getOverlays(ImageDisplay) - Method in class net.imagej.display.DefaultOverlayService
getOverlays() - Method in interface net.imagej.display.OverlayService: Gets a list of all Overlays.
getOverlays(ImageDisplay, boolean) - Method in interface net.imagej.display.OverlayService: Gets a list of Overlays linked to the given ImageDisplay.
getOverlays(ImageDisplay) - Method in interface net.imagej.display.OverlayService: Gets a list of Overlays linked to the given ImageDisplay.
getOverlays(ImagePlus) - Method in class net.imagej.legacy.translate.OverlayHarmonizer: Deprecated.

Extracts a list of Overlays from the given ImagePlus.
getP() - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment
getP0() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
getP1() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
getP2() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
getPaddedInputDimensionsRealToComplex(boolean, Dimensions) - Static method in class net.imagej.ops.filter.fft.FFTMethodsUtility: Calculates padding size size for real to complex FFT
getPageSource(String) - Method in class net.imagej.util.MediaWikiClient
getPanCenter() - Method in class net.imagej.display.DefaultImageCanvas
getPanCenter() - Method in interface net.imagej.display.Pannable: Gets the coordinates of the data space point currently displayed in the center of the viewport.
getPanel() - Method in class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer
getPanel() - Method in interface net.imagej.ui.swing.viewer.image.SwingImageDisplayViewer
getPanOffset() - Method in class net.imagej.display.DefaultImageCanvas
getPanOffset() - Method in interface net.imagej.display.Pannable: Gets the absolute offset of the viewport in pixels from the top left.
getPassword() - Method in class net.imagej.omero.OMEROCommand
getPassword() - Method in class net.imagej.omero.OMEROLocation
getPassword() - Method in class net.imagej.plugins.uploaders.webdav.NetrcParser.Credentials
getPassword(String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
getPassword(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
getPassword(String) - Method in class net.imagej.updater.util.UpdaterUserInterface
getPassword(String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
getPasswordAuthentication() - Method in class net.imagej.ui.swing.updater.SwingAuthenticator
getPasswordAuthentication() - Method in class net.imagej.updater.CommandLine.ConsoleAuthenticator
getPatchedImageJ1() - Static method in class imagej.patcher.LegacyEnvironment: Deprecated.

Launches a fully-patched, self-contained ImageJ 1.x.
getPatchedImageJ1() - Static method in class net.imagej.patcher.LegacyEnvironment: Launches a fully-patched, self-contained ImageJ 1.x.
GetPath - Class in net.imagej.legacy.plugin: Simple command to get a File and return its path.
GetPath() - Constructor for class net.imagej.legacy.plugin.GetPath
getPathForClass() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
getPepperValue() - Method in class net.imagej.plugins.commands.imglib.SaltAndPepper
getPerformInputFFT() - Method in class net.imagej.ops.filter.AbstractFFTFilterC
getPerformKernelFFT() - Method in class net.imagej.ops.filter.AbstractFFTFilterC
getPermissions() - Method in class net.imagej.updater.FilesUploader.DbXmlFile
getPermissions() - Method in interface net.imagej.updater.Uploadable
getPermissions() - Method in class net.imagej.updater.UploadableFile
getPhase() - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment
getPhase() - Method in class net.imagej.types.BigComplex: Gets phase as a BigDecimal.
getPhase() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getPhaseDouble() - Method in class net.imagej.types.BigComplex: Gets phase as a double (narrowing possible).
getPhaseDouble() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getPhaseDouble() - Method in class net.imagej.types.PreciseFixedFloatType
getPhaseDouble() - Method in class net.imagej.types.UnboundedIntegerType
getPhaseFloat() - Method in class net.imagej.types.BigComplex: Gets phase as a float (narrowing possible).
getPhaseFloat() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getPhaseFloat() - Method in class net.imagej.types.PreciseFixedFloatType
getPhaseFloat() - Method in class net.imagej.types.UnboundedIntegerType
getPhysicalSizeX() - Method in class net.imagej.omero.OMEROFormat.Metadata
getPhysicalSizeY() - Method in class net.imagej.omero.OMEROFormat.Metadata
getPhysicalSizeZ() - Method in class net.imagej.omero.OMEROFormat.Metadata
getPixels() - Method in class net.imagej.omero.OMEROFormat.Metadata
getPixels() - Method in class net.imagej.render.DummyTextRenderer
getPixels() - Method in interface net.imagej.render.TextRenderer
getPixels() - Method in class net.imagej.ui.awt.AWTTextRenderer
getPixelsHeight() - Method in class net.imagej.render.DummyTextRenderer
getPixelsHeight() - Method in interface net.imagej.render.TextRenderer
getPixelsHeight() - Method in class net.imagej.ui.awt.AWTTextRenderer
getPixelsID() - Method in class net.imagej.omero.OMEROFormat.Metadata
getPixelsWidth() - Method in class net.imagej.render.DummyTextRenderer
getPixelsWidth() - Method in interface net.imagej.render.TextRenderer
getPixelsWidth() - Method in class net.imagej.ui.awt.AWTTextRenderer
getPixelType() - Method in class net.imagej.omero.OMEROFormat.Metadata
getPlane(int) - Method in interface net.imagej.Dataset: gets a plane of data from the Dataset.
getPlane(int, boolean) - Method in interface net.imagej.Dataset: gets a plane of data from the Dataset.
getPlane(int) - Method in class net.imagej.DefaultDataset
getPlane(int, boolean) - Method in class net.imagej.DefaultDataset: gets a plane of data from the Dataset.
getPlaneExtents() - Method in class net.imagej.display.DefaultImageDisplay
getPlaneExtents() - Method in interface net.imagej.display.ImageDisplay: Gets a rectangle defining the extents of the image in the current X/Y plane.
getPlaneOffset() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet: Computes the offset of this facet
getPlanePosition() - Method in class net.imagej.display.AbstractDataView
getPlanePosition() - Method in interface net.imagej.display.DataView: Gets the N-dimensional plane position of this view.
getPlatform() - Static method in class net.imagej.updater.util.UpdaterUtil
getPlatforms() - Method in class net.imagej.updater.FileObject
getPluginService() - Method in class net.imagej.display.DefaultImageDisplayService
getPluginService() - Method in interface net.imagej.display.ImageDisplayService
getPluginService() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
getPluginType() - Method in class net.imagej.autoscale.DefaultAutoscaleService
getPluginType() - Method in class net.imagej.legacy.plugin.MacroExtensionAutoCompletionService
getPluginType() - Method in class net.imagej.ops.DefaultNamespaceService
getPluginType() - Method in class net.imagej.ops.DefaultOpService
getPluginType() - Method in class net.imagej.types.DefaultDataTypeService
getPoint(int) - Method in class net.imagej.overlay.PointOverlay
getPoint1(double[]) - Method in class net.imagej.overlay.AngleOverlay
getPoint1(int) - Method in class net.imagej.overlay.AngleOverlay
getPoint2(double[]) - Method in class net.imagej.overlay.AngleOverlay
getPoint2(int) - Method in class net.imagej.overlay.AngleOverlay
getPoints() - Method in interface net.imagej.omero.roi.polyshape.OMEROPolygon
getPoints() - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyline
getPoints() - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape
getPoints() - Method in class net.imagej.overlay.PointOverlay
getPoints() - Method in interface net.imagej.plugins.commands.assign.noisereduce.Neighborhood
getPoints() - Method in class net.imagej.plugins.commands.assign.noisereduce.RadialNeigh
getPoints() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeigh
getPoints() - Method in class net.imagej.ui.swing.overlay.PointFigure
getPointsInFront() - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
getPointX() - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
getPointY() - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
getPort() - Method in class net.imagej.omero.OMEROCommand
getPort() - Method in class net.imagej.omero.OMEROLocation
getPort() - Method in class net.imagej.options.OptionsProxy
getPosition(long[]) - Method in class net.imagej.DrawingTool: Gets this DrawingHelper's current drawing position.
getPosition() - Method in class net.imagej.plugins.commands.assign.FillDataValues
getPosition() - Method in class net.imagej.plugins.commands.restructure.AddData
getPosition() - Method in class net.imagej.plugins.commands.restructure.DeleteAxis
getPosition() - Method in class net.imagej.plugins.commands.restructure.DeleteData
getPositiveX() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
getPositiveY() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
getPossiblyVersionedFile(File) - Static method in class net.imagej.launcher.ClassLoaderPlus
getPower() - Method in class net.imagej.types.BigComplex: Gets magnitude as a BigDecimal.
getPower() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getPowerDouble() - Method in class net.imagej.types.BigComplex: Gets magnitude as a double (narrowing possible).
getPowerDouble() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getPowerDouble() - Method in class net.imagej.types.PreciseFixedFloatType
getPowerDouble() - Method in class net.imagej.types.UnboundedIntegerType
getPowerFloat() - Method in class net.imagej.types.BigComplex: Gets magnitude as a float (narrowing possible).
getPowerFloat() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getPowerFloat() - Method in class net.imagej.types.PreciseFixedFloatType
getPowerFloat() - Method in class net.imagej.types.UnboundedIntegerType
getPref(String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
getPref(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
getPref(String) - Method in class net.imagej.updater.util.UpdaterUserInterface
getPref(String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
getPreferredHeight() - Method in interface net.imagej.display.DataView: Gets the view's natural height in pixels.
getPreferredHeight() - Method in class net.imagej.display.DefaultDatasetView
getPreferredHeight() - Method in class net.imagej.display.DefaultOverlayView
getPreferredSize() - Method in class net.imagej.ui.swing.SwingColorBar
getPreferredSizeX() - Method in class net.imagej.widget.HistogramBundle: Gets the preferred X size of the widget for the rendering of this histogram.
getPreferredSizeY() - Method in class net.imagej.widget.HistogramBundle: Gets the preferred Y size of the widget for the rendering of this histogram.
getPreferredWidth() - Method in interface net.imagej.display.DataView: Gets the view's natural width in pixels.
getPreferredWidth() - Method in class net.imagej.display.DefaultDatasetView
getPreferredWidth() - Method in class net.imagej.display.DefaultOverlayView
getPreview() - Method in class net.imagej.plugins.commands.assign.MathCommand
getPreviewCheckbox() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getPreviewCheckbox() - Method in class net.imagej.patcher.HeadlessGenericDialog
getPrevious() - Method in class net.imagej.updater.FileObject
getPrintStream() - Method in class net.imagej.ui.swing.updater.DiffView: Construct a PrintStream adapter to this view.
getProcessingTime() - Method in class net.imagej.minmax.DefaultMinMaxMethod
getProcessingTime() - Method in interface net.imagej.minmax.MinMaxMethod
getProgress(String) - Method in class net.imagej.ui.swing.updater.UpdaterFrame
getProjector() - Method in interface net.imagej.display.DatasetView
getProjector() - Method in class net.imagej.display.DefaultDatasetView
getProperties() - Method in class net.imagej.DefaultDataset
getProperties() - Method in interface net.imagej.ImageMetadata: Gets a table of key/value pairs associated with the image.
getProperties() - Method in class net.imagej.ImgPlus
getProtocol() - Method in class net.imagej.plugins.uploaders.ssh.SFTPFileUploader
getProtocol() - Method in class net.imagej.plugins.uploaders.ssh.SSHFileUploader
getProtocol() - Method in class net.imagej.plugins.uploaders.webdav.WebDAVUploader
getProtocol() - Method in class net.imagej.updater.FileUploader
getProtocol() - Method in interface net.imagej.updater.Uploader: TODO
getProtocol() - Static method in class net.imagej.updater.util.HTTPSUtil
getProtocols(Iterable<FileObject>) - Method in class net.imagej.updater.FilesCollection
getProxyServer() - Method in class net.imagej.options.OptionsProxy
getPValue() - Method in class net.imagej.ops.coloc.pValue.PValueResult
getPValues() - Method in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata: returns the pValue image
getPValuesRandomAccess() - Method in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata: returns the pValue image's RandomAccess
getQuantity() - Method in class net.imagej.plugins.commands.restructure.AddData
getQuantity() - Method in class net.imagej.plugins.commands.restructure.DeleteData
getRadioButtonGroups() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getRadioButtonGroups() - Method in class net.imagej.patcher.HeadlessGenericDialog
getRadius(int) - Method in class net.imagej.overlay.EllipseOverlay
getRadius() - Method in class net.imagej.plugins.commands.assign.noisereduce.RadialNeighborhoodSpecifier
getRange(IterableInterval<T>) - Method in interface net.imagej.autoscale.AutoscaleMethod: Calculates the range of interest from the data contained in the given IterableInterval.
getRange(IterableInterval<T>) - Method in class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod
getRange(IterableInterval<T>) - Method in class net.imagej.autoscale.DefaultAutoscaleMethod
getRank() - Method in class net.imagej.updater.UpdateSite
getRate() - Method in class net.imagej.plugins.tools.SprayCanTool
getReal() - Method in class net.imagej.types.BigComplex: Gets real component of this complex number as a BigDecimal.
getReal() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getRealDouble() - Method in class net.imagej.server.mixins.Mixins.IntegerTypeMixIn
getRealDouble() - Method in class net.imagej.server.mixins.Mixins.RealTypeMixIn
getRealDouble() - Method in class net.imagej.types.BigComplex: Gets real component as a double (narrowing possible).
getRealDouble() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getRealDouble() - Method in class net.imagej.types.PreciseFixedFloatType
getRealDouble() - Method in class net.imagej.types.UnboundedIntegerType
getRealFloat() - Method in class net.imagej.types.BigComplex: Gets real component as a float (narrowing possible).
getRealFloat() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getRealFloat() - Method in class net.imagej.types.PreciseFixedFloatType
getRealFloat() - Method in class net.imagej.types.UnboundedIntegerType
getRecursively(URLClassLoader, File) - Static method in class net.imagej.launcher.ClassLoaderPlus
getRecursively(URLClassLoader, boolean, File) - Static method in class net.imagej.launcher.ClassLoaderPlus
getRecursivelyInImageJDirectory(URLClassLoader, String...) - Static method in class net.imagej.launcher.ClassLoaderPlus
getRecursivelyInImageJDirectory(URLClassLoader, boolean, String...) - Static method in class net.imagej.launcher.ClassLoaderPlus
getRef() - Method in class net.imagej.ops.OpCandidate: Gets the op reference describing the desired match.
getRegionOfInterest() - Method in class net.imagej.overlay.AbstractOverlay
getRegionOfInterest() - Method in class net.imagej.overlay.AbstractROIOverlay
getRegionOfInterest() - Method in interface net.imagej.overlay.Overlay: Retrieves the ImgLib region of interest, if any, that knows how to determine whether a pixel is included in the overlay.
getRegionOrigin() - Method in class net.imagej.plugins.commands.assign.InplaceUnaryTransform
getRegionSpan() - Method in class net.imagej.plugins.commands.assign.InplaceUnaryTransform
getRemoves() - Method in class net.imagej.ui.swing.updater.DiffView: Get the number of removed lines.
getResolutions() - Method in class net.imagej.updater.Conflicts.Conflict
getResource(String) - Method in class imagej.patcher.LegacyClassLoader: Deprecated.
getResource(String) - Method in class net.imagej.patcher.LegacyClassLoader
getResult() - Method in interface net.imagej.plugins.commands.imglib.OutputAlgorithm
getResult() - Method in class net.imagej.plugins.commands.rotate.XYFlipper: Returns the resulting output image
getResultLimit() - Method in class net.imagej.legacy.search.SearchOptions
getRoi() - Method in class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper
getRoi() - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper
getRoi() - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
getRoi() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
getRoi() - Method in interface net.imagej.legacy.convert.roi.IJRoiWrapper: Returns the backing ImageJ 1.x Roi.
getRoi() - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper
getRoi() - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper
getRoi() - Method in class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper
getRoi() - Method in class net.imagej.legacy.convert.roi.ShapeRoiWrapper
getRoi() - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
getROIMapping(Object) - Method in class net.imagej.omero.DefaultOMEROService
getROIMapping(Object) - Method in class net.imagej.omero.legacy.LegacyOMEROService
getROIMapping(Object) - Method in interface net.imagej.omero.OMEROService: Retrieve the ROIData associated with this key.
getROIMappingKeys() - Method in class net.imagej.omero.DefaultOMEROService
getROIMappingKeys() - Method in interface net.imagej.omero.OMEROService: Returns all the keys for mapped ROIs.
getRois() - Method in class net.imagej.omero.OMEROFormat.Metadata
getROIs(Dataset) - Method in interface net.imagej.roi.ROIService: Returns the ROITree of the given Dataset
getRowCount() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
getRowCount() - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
getRowCount() - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel
getRowHeader(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
getRowIndex(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
getSaltValue() - Method in class net.imagej.plugins.commands.imglib.SaltAndPepper
getScreenImage() - Method in interface net.imagej.display.DatasetView
getScreenImage() - Method in class net.imagej.display.DefaultDatasetView
getScriptEngine() - Method in class net.imagej.legacy.plugin.IJ1MacroLanguage
getScriptsAndNonLegacyCommands() - Method in class net.imagej.legacy.LegacyService: This is not part of the public API.
getSearchBar() - Method in class net.imagej.legacy.IJ1Helper
getSecond() - Method in class net.imagej.ops.join.DefaultJoin2Computers
getSecond() - Method in class net.imagej.ops.join.DefaultJoin2Inplaces
getSecond() - Method in class net.imagej.ops.join.DefaultJoinComputerAndInplace
getSecond() - Method in class net.imagej.ops.join.DefaultJoinInplaceAndComputer
getSecond() - Method in interface net.imagej.ops.join.Join2Ops
getSecurityContext() - Method in class net.imagej.omero.DefaultOMEROSession
getSecurityContext() - Method in interface net.imagej.omero.OMEROSession: Gets the SecurityContext associated with this OMEROSession
getSeed() - Method in class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseRealType
getSeed() - Method in class net.imagej.ops.math.UnaryRealTypeMath.RandomGaussian
getSeed() - Method in class net.imagej.ops.math.UnaryRealTypeMath.RandomUniform
getSelectedFiles() - Method in class net.imagej.ui.swing.updater.FileTable
getSelectedFiles(int) - Method in class net.imagej.ui.swing.updater.FileTable
getSelectionBounds(ImageDisplay) - Method in class net.imagej.display.DefaultOverlayService
getSelectionBounds(ImageDisplay) - Method in interface net.imagej.display.OverlayService: Gets the bounding box for the selected overlays in the given ImageDisplay.
getSelectionColor() - Method in class net.imagej.options.OptionsAppearance
getServer() - Method in class net.imagej.omero.OMEROCommand
getServer() - Method in class net.imagej.omero.OMEROLocation
getSession() - Method in class net.imagej.omero.DefaultOMEROSession
getSession() - Method in interface net.imagej.omero.OMEROSession: Gets the ServiceFactoryPrx associated with this OMEROSession
getSessionID() - Method in class net.imagej.omero.DefaultOMEROSession
getSessionID() - Method in class net.imagej.omero.OMEROLocation
getSessionID() - Method in interface net.imagej.omero.OMEROSession: Gets the session ID associated with this OMEROSession
getSeverity() - Method in class net.imagej.updater.Conflicts.Conflict
getShape() - Method in class net.imagej.omero.legacy.text.OMEROText
getShape() - Method in class net.imagej.omero.roi.AbstractOMERORealMaskRealInterval
getShape() - Method in interface net.imagej.omero.roi.OMERORealMask
getShape() - Method in class net.imagej.omero.roi.project.ProjectedOMERORealMask
getShape() - Method in class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealInterval
getShape() - Method in class net.imagej.ops.filter.AbstractCenterAwareNeighborhoodBasedFilter: Get the shape (structuring element) used by this filter.
getShape() - Method in class net.imagej.ops.filter.AbstractNeighborhoodBasedFilter: Get the shape (structuring element) used by this filter.
getShape() - Method in class net.imagej.ops.threshold.apply.LocalThresholdIntegral: Get the shape (structuring element) used by this filter.
getShortcuts() - Method in class net.imagej.legacy.IJ1Helper
getShortName() - Method in class net.imagej.ImageJ
getSimpleName() - Method in class net.imagej.ops.OpInfo: Gets the name without namespace prefix.
getSiteName() - Method in class net.imagej.updater.FilesUploader
getSiteNamesToUpload() - Method in class net.imagej.updater.FilesCollection
getSizeC() - Method in class net.imagej.omero.OMEROFormat.Metadata
getSizeT() - Method in class net.imagej.omero.OMEROFormat.Metadata
getSizeX() - Method in class net.imagej.omero.OMEROFormat.Metadata
getSizeY() - Method in class net.imagej.omero.OMEROFormat.Metadata
getSizeZ() - Method in class net.imagej.omero.OMEROFormat.Metadata
getSliders() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getSliders() - Method in class net.imagej.patcher.HeadlessGenericDialog
getSoftMaximum() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
getSoftMinimum() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
getSortedData() - Method in class net.imagej.ops.coloc.MergeSort
getSortedEntries(JarFile) - Static method in class net.imagej.updater.Diff: Make an alphabetically-sorted list of files inside a .jar file.
getSource() - Method in class net.imagej.DefaultDataset
getSource() - Method in class net.imagej.ImgPlus
getSource() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
getSource() - Method in class net.imagej.legacy.convert.roi.box.BoxWrapper
getSource() - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidWrapper
getSource() - Method in class net.imagej.legacy.convert.roi.line.LineWrapper
getSource() - Method in interface net.imagej.legacy.convert.roi.MaskPredicateWrapper: Get associated MaskPredicate.
getSource() - Method in class net.imagej.legacy.convert.roi.point.PointMaskWrapper
getSource() - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionWrapper
getSource() - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DWrapper
getSource() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineWrapper
getSource() - Method in class net.imagej.legacy.convert.TableListWrapper: Returns the source List<Table<?, ?>>.
getSource() - Method in class net.imagej.legacy.convert.TableWrapper
getSource() - Method in class net.imagej.omero.legacy.LazyOverlay: Returns the source LazyROITree.
getSource() - Method in class net.imagej.omero.legacy.mask.OMEROMaskWrapper
getSource() - Method in class net.imagej.omero.legacy.text.OMEROTextWrapper
getSource() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMask
getSource() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMaskRealInterval
getSource() - Method in class net.imagej.omero.roi.project.ProjectedOMERORealMask
getSource() - Method in interface net.imagej.Sourced: Gets the source String
getSourceFile() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
getSpacing(int) - Method in class net.imagej.plugins.commands.imglib.ResliceImage: Gets the reslice spacing for a given axis.
getStackThreads() - Method in class net.imagej.options.OptionsMemoryAndThreads: Returns the number of stack threads that should be allocated for use by ImageJ.
getStartArrowStyle() - Method in class net.imagej.options.OptionsOverlay
getStartArrowStyle() - Method in class net.imagej.overlay.OverlaySettings
getStartingWavelength() - Method in class net.imagej.plugins.commands.display.SpectralComposite
getStartLineArrowStyle() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
getStartPoint() - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
getStatus() - Method in class net.imagej.ops.OpCandidate: Gets a descriptive status message in human readable form.
getStatus() - Method in class net.imagej.tensorflow.DefaultTensorFlowService
getStatus() - Method in interface net.imagej.tensorflow.TensorFlowService
getStatus() - Method in class net.imagej.updater.FileObject
getStatusBar() - Method in class net.imagej.legacy.IJ1Helper
getStatusBar() - Method in class net.imagej.legacy.ui.LegacyUI
getStatusCode() - Method in class net.imagej.ops.OpCandidate: Gets the matching status code.
getStatusItem() - Method in class net.imagej.ops.OpCandidate: Gets the status item related to the matching status, if any.
getStatusMessage() - Method in class net.imagej.ops.OpCandidate: Gets a message elaborating on the matching status, if any.
getStdDev() - Method in class net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues
getStepSize() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
getString(String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
getString(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
getString(String) - Method in class net.imagej.updater.util.UpdaterUserInterface
getString(String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
getStringConstant(int) - Method in class net.imagej.updater.util.ByteCodeAnalyzer
getStringFields() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getStringFields() - Method in class net.imagej.patcher.HeadlessGenericDialog
getStrokeColor() - Method in class net.imagej.options.OptionsRoundedRectangleTool
getStrokeWidth() - Method in class net.imagej.options.OptionsRoundedRectangleTool
getStubPath() - Method in class net.imagej.legacy.SingleInstance
getStyle(Color, boolean, boolean, String, int) - Static method in class net.imagej.ui.swing.updater.DiffView: Create an attribute set for stylish text.
getStyle(Color, boolean, boolean, String, int) - Static method in class net.imagej.ui.swing.updater.FileDetails
getSubcomponents() - Method in class net.imagej.overlay.CompositeOverlay
getSuperclass() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
getSystemClipboard() - Method in class net.imagej.legacy.ui.LegacyUI
getTableFileExtension() - Method in class net.imagej.options.OptionsInputOutput
getTables() - Method in class net.imagej.omero.OMEROFormat.Metadata
getTables(Dataset) - Method in class net.imagej.table.DefaultTableService
getTables(Dataset) - Method in interface net.imagej.table.TableService: Retrieves the Tables attached to the given Dataset.
getTargetJavaVersion() - Method in class net.imagej.options.OptionsCompiler
getTargetWidgetStyle(ModuleItem<?>) - Method in class net.imagej.batch.input.DatasetBatchInputProvider
getTensorFlowJAR() - Static method in class net.imagej.tensorflow.util.TensorFlowUtil
getTensorFlowJARVersion(URL) - Static method in class net.imagej.tensorflow.util.TensorFlowUtil
getTensorFlowVersion() - Method in class net.imagej.tensorflow.DefaultTensorFlowService
getTensorFlowVersion() - Method in interface net.imagej.tensorflow.TensorFlowService
getText(O) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.AbstractOMERORealMaskToIJRoi
getText(OMEROEllipse) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROEllipseToOvalRoi
getText(OMEROLine) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROLineToIJLine
getText(OMEROMask) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROMaskToImageRoi
getText(OMEROPoint) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPointToPointRoi
getText(OMEROPolygon) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolygonToPolygonRoi
getText(OMEROPolyline) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolylineToPolygonRoi
getText(OMERORectangle) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMERORectangleToRoi
getText(OMEROText) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROTextToTextRoi
getText() - Method in class net.imagej.omero.legacy.text.OMEROText
getText() - Method in class net.imagej.overlay.TextOverlay
getTextAntialiasing() - Method in class net.imagej.DrawingTool: Get the drawn text antialiasing value: on (true) or off (false)
getTextArea1() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getTextArea1() - Method in class net.imagej.patcher.HeadlessGenericDialog
getTextArea2() - Method in class imagej.patcher.HeadlessGenericDialog: Deprecated.
getTextArea2() - Method in class net.imagej.patcher.HeadlessGenericDialog
getTextRenderer() - Method in class net.imagej.render.DummyRenderingService
getTextRenderer() - Method in interface net.imagej.render.RenderingService
getTextRenderer() - Method in class net.imagej.ui.awt.AWTRenderingService
getTextValue(TextData) - Method in class net.imagej.omero.legacy.text.OMEROTextUnwrapper
getTextValue(TextData) - Method in class net.imagej.omero.legacy.text.OMEROToImageJText
getTextValue(S) - Method in class net.imagej.omero.roi.AbstractOMERORealMaskUnwrapper
getTextValue(S) - Method in class net.imagej.omero.roi.AbstractShapeDataToRealMaskRealInterval
getTextValue(EllipseData) - Method in class net.imagej.omero.roi.ellipse.OMEROEllipseUnwrapper
getTextValue(EllipseData) - Method in class net.imagej.omero.roi.ellipse.OMEROToImageJEllipse
getTextValue(LineData) - Method in class net.imagej.omero.roi.line.OMEROLineUnwrapper
getTextValue(LineData) - Method in class net.imagej.omero.roi.line.OMEROToImageJLine
getTextValue(MaskData) - Method in class net.imagej.omero.roi.mask.OMEROMaskUnwrapper
getTextValue(MaskData) - Method in class net.imagej.omero.roi.mask.OMEROToImageJMask
getTextValue(PointData) - Method in class net.imagej.omero.roi.point.OMEROPointUnwrapper
getTextValue(PointData) - Method in class net.imagej.omero.roi.point.OMEROToImageJPoint
getTextValue(PolygonData) - Method in class net.imagej.omero.roi.polyshape.OMEROPolygonUnwrapper
getTextValue(PolylineData) - Method in class net.imagej.omero.roi.polyshape.OMEROPolylineUnwrapper
getTextValue(PolygonData) - Method in class net.imagej.omero.roi.polyshape.OMEROToImageJPolygon
getTextValue(PolylineData) - Method in class net.imagej.omero.roi.polyshape.OMEROToImageJPolyline
getTextValue(RectangleData) - Method in class net.imagej.omero.roi.rectangle.OMERORectangleUnwrapper
getTextValue(RectangleData) - Method in class net.imagej.omero.roi.rectangle.OMEROToImageJRectangle
getTheoreticalMax() - Method in class net.imagej.widget.HistogramBundle: Gets the maximum value of the desired range.
getTheoreticalMin() - Method in class net.imagej.widget.HistogramBundle: Gets the minimum value of the desired range.
getThreadAncestors() - Method in class net.imagej.legacy.DefaultLegacyHooks
getThreadAncestors() - Method in class net.imagej.patcher.LegacyHooks: Iterates through the current thread's ancestors.
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.apply.ApplyManualThreshold
getThreshold(I) - Method in interface net.imagej.ops.threshold.ApplyThresholdIterable
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Huang
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.IJ1
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Intermodes
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.IsoData
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Li
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.MaxEntropy
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.MaxLikelihood
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Mean
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.MinError
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Minimum
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Moments
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Otsu
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Percentile
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.RenyiEntropy
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Rosin
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Shanbhag
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Triangle
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Yen
getThresholdComputer() - Method in class net.imagej.ops.threshold.LocalThresholdMethodHistogram
getTimeIncrement() - Method in class net.imagej.omero.OMEROFormat.Metadata
getTimePosition() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMask
getTimestamp() - Method in class net.imagej.updater.AbstractUploader
getTimestamp() - Method in class net.imagej.updater.FileObject
getTimestamp() - Method in class net.imagej.updater.UpdateSite
getTimestamp() - Method in interface net.imagej.updater.Uploader: TODO
getTimestamp(File) - Static method in class net.imagej.updater.util.UpdaterUtil
getTitle(Object) - Static method in class net.imagej.legacy.IJ1Helper: Returns ImagePlus.getTitle() if the object is an ImagePlus, otherwise null.
getTolerance() - Method in class net.imagej.options.OptionsWandTool
getToolBar() - Method in class net.imagej.legacy.IJ1Helper
getToolBar() - Method in class net.imagej.legacy.ui.LegacyUI
getTransformRestoreData() - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
getTransformRestoreData() - Method in class net.imagej.ui.swing.overlay.PointFigure
getTransformRestoreData() - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
getTransparentIndex() - Method in class net.imagej.options.OptionsInputOutput
getType() - Method in interface net.imagej.Dataset: TODO
getType() - Method in class net.imagej.DefaultDataset
getType() - Method in class net.imagej.ops.map.AbstractMapView
getType() - Method in interface net.imagej.ops.map.MapView
getType() - Method in class net.imagej.ops.OpInfo: Gets the type of op, as specified via @Plugin(type = <type>)).
getType() - Method in interface net.imagej.types.DataType: Provides an example of the underlying NumericType.
getType() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
getType() - Method in class net.imagej.types.DataType12BitUnsignedInteger
getType() - Method in class net.imagej.types.DataType16BitSignedInteger
getType() - Method in class net.imagej.types.DataType16BitUnsignedInteger
getType() - Method in class net.imagej.types.DataType1BitUnsignedInteger
getType() - Method in class net.imagej.types.DataType32BitSignedFloat
getType() - Method in class net.imagej.types.DataType32BitSignedInteger
getType() - Method in class net.imagej.types.DataType32BitUnsignedInteger
getType() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
getType() - Method in class net.imagej.types.DataType64BitSignedFloat
getType() - Method in class net.imagej.types.DataType64BitSignedInteger
getType() - Method in class net.imagej.types.DataType8BitSignedInteger
getType() - Method in class net.imagej.types.DataType8BitUnsignedInteger
getType() - Method in class net.imagej.types.DataTypeBoolean
getType() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
getType() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
getType() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
getType() - Method in class net.imagej.ui.dnd.LUTFileDragAndDropHandler
getTypeByAttributes(int, boolean, boolean, boolean, boolean) - Method in interface net.imagej.types.DataTypeService: Returns the DataType whose internal type class matches the given specifications exactly.
getTypeByAttributes(int, boolean, boolean, boolean, boolean) - Method in class net.imagej.types.DefaultDataTypeService
getTypeByClass(Class<?>) - Method in interface net.imagej.types.DataTypeService: Returns the DataType whose internal type class matches the given typeClass.
getTypeByClass(Class<?>) - Method in class net.imagej.types.DefaultDataTypeService
getTypeByName(String) - Method in interface net.imagej.types.DataTypeService: Returns the DataType whose internal name matches the given typeName.
getTypeByName(String) - Method in class net.imagej.types.DefaultDataTypeService
getTypeLabelLong() - Method in interface net.imagej.Dataset: Gets the full string description of the dataset's pixel type.
getTypeLabelLong() - Method in class net.imagej.DefaultDataset
getTypeLabelShort() - Method in interface net.imagej.Dataset: Gets a short string description of the dataset's pixel type.
getTypeLabelShort() - Method in class net.imagej.DefaultDataset
getTypes() - Method in class net.imagej.ops.OpRef: Gets the types which the op must match.
getUAxis() - Method in class net.imagej.DrawingTool: Returns the index of the U axis of this Drawing Tool.
getUI() - Method in class net.imagej.legacy.ui.LegacyInputHarvester
getUnit() - Method in class net.imagej.plugins.commands.imglib.RotateImageXY: Gets the current angle unit setting (radians or degrees).
getUnit(int) - Method in class net.imagej.plugins.commands.restructure.EditAxes
getUpdatedServerROIData(long) - Method in class net.imagej.omero.DefaultOMEROService
getUpdatedServerROIData(long) - Method in interface net.imagej.omero.OMEROService: Returns the most recently retrieved ROIData object with the given ID.
getUpdatedSource() - Method in interface net.imagej.legacy.convert.roi.MaskPredicateWrapper: Synchronize the two ROIs, and return the associated MaskPredicate.
getUpdatedSource() - Method in class net.imagej.legacy.convert.TableListWrapper: Synchronizes and returns the source List<Table<?, ?>>.
getUpdateLibDir(String) - Static method in class net.imagej.tensorflow.util.TensorFlowUtil
getUpdaterFiles(FilesCollection, CommandService, boolean) - Static method in class net.imagej.updater.Installer
getUpdateSite(int) - Method in class net.imagej.ui.swing.updater.SitesDialog
getUpdateSite(String) - Method in class net.imagej.updater.DefaultUpdateService
getUpdateSite(File) - Method in class net.imagej.updater.DefaultUpdateService
getUpdateSite(String) - Method in class net.imagej.updater.FilesCollection: Deprecated.
use FilesCollection.getUpdateSite(String, boolean) instead
getUpdateSite(String, boolean) - Method in class net.imagej.updater.FilesCollection
getUpdateSite(String) - Method in interface net.imagej.updater.UpdateService: Gets the update site with the given name.
getUpdateSite(File) - Method in interface net.imagej.updater.UpdateService: Gets the update site housing the given file.
getUpdateSiteName(int) - Method in class net.imagej.ui.swing.updater.SitesDialog
getUpdateSiteNames() - Method in class net.imagej.updater.FilesCollection: Deprecated.
use FilesCollection.getUpdateSiteNames(boolean) instead
getUpdateSiteNames(boolean) - Method in class net.imagej.updater.FilesCollection: Gets the names of known update sites.
getUpdateSites(boolean) - Method in class net.imagej.updater.FilesCollection: Gets the list of known update sites.
getUploadDirectory() - Method in class net.imagej.updater.FilesUploader
getUploadDirectory() - Method in class net.imagej.updater.UpdateSite
getUploader(String) - Method in class net.imagej.updater.DefaultUploaderService
getUploader(String) - Method in interface net.imagej.updater.UploaderService: TODO.
getUploaderService() - Method in class net.imagej.ui.swing.updater.UpdaterFrame: Gets the uploader service associated with this updater frame.
getUploadHost() - Method in class net.imagej.updater.FilesUploader
getUploadProtocol() - Method in class net.imagej.updater.UpdateSite
getUpperTailProportion() - Method in class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod: Returns the fractional proportion of the distribution to count as in upper tail.
getURL(FileObject) - Method in class net.imagej.updater.FilesCollection
getURL() - Method in class net.imagej.updater.UpdateSite
getURL() - Method in interface net.imagej.updater.util.Downloadable
getUser() - Method in class net.imagej.omero.OMEROCommand
getUser() - Method in class net.imagej.omero.OMEROLocation
getUsername() - Method in class net.imagej.plugins.uploaders.webdav.NetrcParser.Credentials
getUsername(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
getValidActions() - Method in class net.imagej.updater.FilesCollection
getValidActions(Iterable<FileObject>) - Method in class net.imagej.updater.FilesCollection
getValidBits() - Method in class net.imagej.DefaultDataset
getValidBits() - Method in interface net.imagej.ImageMetadata: Gets the number of valid bits (if applicable to this Img).
getValidBits() - Method in class net.imagej.ImgPlus
getValue() - Method in class net.imagej.display.process.ActiveChannelCollectionPreprocessor
getValue() - Method in class net.imagej.display.process.ActiveDatasetPreprocessor
getValue() - Method in class net.imagej.display.process.ActiveDatasetViewPreprocessor
getValue() - Method in class net.imagej.display.process.ActiveDataViewPreprocessor
getValue() - Method in class net.imagej.display.process.ActiveImageDisplayPreprocessor
getValue() - Method in class net.imagej.display.process.ActiveOverlayPreprocessor
getValue() - Method in class net.imagej.display.process.ActivePositionPreprocessor
getValue() - Method in class net.imagej.display.process.SingleInputPreprocessor: Gets the single input value to populate.
getValue() - Method in class net.imagej.matlab.MATLABNumericArrayPreprocessor
getValue() - Method in class net.imagej.omero.legacy.LegacyROIPreprocessor
getValue() - Method in class net.imagej.plugins.commands.assign.AddToDataValues
getValue() - Method in class net.imagej.plugins.commands.assign.AndDataValuesWith
getValue() - Method in class net.imagej.plugins.commands.assign.DivideDataValuesBy
getValue() - Method in class net.imagej.plugins.commands.assign.GammaDataValues
getValue() - Method in class net.imagej.plugins.commands.assign.MaxDataValues
getValue() - Method in class net.imagej.plugins.commands.assign.MinDataValues
getValue() - Method in class net.imagej.plugins.commands.assign.MultiplyDataValuesBy
getValue() - Method in class net.imagej.plugins.commands.assign.OrDataValuesWith
getValue() - Method in class net.imagej.plugins.commands.assign.PowerDataValues
getValue() - Method in class net.imagej.plugins.commands.assign.SetDataValues
getValue() - Method in class net.imagej.plugins.commands.assign.SubtractFromDataValues
getValue() - Method in class net.imagej.plugins.commands.assign.XorDataValuesWith
getValue() - Method in class net.imagej.ui.swing.widget.SwingColorTableWidget
getValue() - Method in class net.imagej.ui.swing.widget.SwingDimSelectionWidget
getValue() - Method in class net.imagej.ui.swing.widget.SwingHistogramWidget
getValueAt(int, int) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
getValueAt(int, int) - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel
getValueAtDim(int) - Method in interface net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation
getValueAtDim(int) - Method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation2D
getValueAtDim(int) - Method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation3D
getValueMethod() - Method in class net.imagej.plugins.commands.imglib.Binner: Gets the value method used to combine pixels.
getValues() - Method in class net.imagej.plugins.tools.PixelRecorder: Returns the values of all the channels associated with the processed mouse event.
getVar(int, String) - Method in class net.imagej.plugins.commands.restructure.EditAxes
getVariable(Object, String) - Method in class net.imagej.legacy.IJ1Helper: Gets the value of the specified variable, from the given macro Interpreter.
getVariables(Object) - Method in class net.imagej.legacy.IJ1Helper: Gets the value of the specified variable, from the given macro Interpreter.
getVAxis() - Method in class net.imagej.DrawingTool: Returns the index of the V axis of this Drawing Tool.
getVersion() - Method in class net.imagej.app.ToplevelImageJApp
getVersion() - Method in class net.imagej.legacy.command.LegacyCommandInfo
getVersion() - Method in class net.imagej.legacy.IJ1Helper: Gets the version of ImageJ 1.x.
getVersion() - Method in class net.imagej.legacy.LegacyImageJApp
getVersion() - Method in class net.imagej.legacy.LegacyService: Gets the version of ImageJ 1.x being used.
getVersion() - Method in class net.imagej.omero.ModuleAdapter: Gets the version of the associated ImageJ module.
getVersionNumber() - Method in class net.imagej.tensorflow.TensorFlowVersion
getVerticesInFront() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet: All points which are in front of this plane.
getView() - Method in class net.imagej.command.AbstractPlanarCommand
getView() - Method in interface net.imagej.command.PlanarCommand
getView() - Method in class net.imagej.display.event.DataViewEvent
getView() - Method in class net.imagej.plugins.commands.display.ChannelsTool
getView() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
getView() - Method in class net.imagej.plugins.commands.display.SpectralComposite
getView() - Method in class net.imagej.ui.swing.overlay.FigureCreatedEvent
getView(FileTable) - Method in class net.imagej.ui.swing.updater.ViewOptions
getViewportHeight() - Method in class net.imagej.display.DefaultImageCanvas
getViewportHeight() - Method in interface net.imagej.display.ImageCanvas: Gets the current height of the canvas viewport in panel coordinates.
getViewportWidth() - Method in class net.imagej.display.DefaultImageCanvas
getViewportWidth() - Method in interface net.imagej.display.ImageCanvas: Gets the current width of the canvas viewport in panel coordinates.
getWarnings() - Method in class net.imagej.updater.XMLFileDownloader
getWarnings() - Method in class net.imagej.updater.XMLFileReader
getWaveIncrement() - Method in class net.imagej.omero.OMEROFormat.Metadata
getWaveStart() - Method in class net.imagej.omero.OMEROFormat.Metadata
getWidget(String) - Method in class net.imagej.server.resources.ModulesResource: Gets more detailed information of a module with the given ID.
getWidgetStyle() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
getWidth() - Method in interface net.imagej.Dataset: Gets the length of the Axes.X axis, or 1 if no such axis.
getWidth() - Method in class net.imagej.options.OptionsProfilePlot
getWidth() - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
getWidth() - Method in class net.imagej.plugins.tools.SprayCanTool
getWindow() - Method in class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel
getX() - Method in class net.imagej.legacy.IJ1Helper
getX() - Method in class net.imagej.omero.legacy.text.OMEROText: Returns the x coordinate of the lower left corner of the text.
getX() - Method in class net.imagej.ui.swing.overlay.PointFigure
getY() - Method in class net.imagej.legacy.IJ1Helper
getY() - Method in class net.imagej.omero.legacy.text.OMEROText: Returns the y coordinate of the lower left corner of the text.
getY() - Method in class net.imagej.ui.swing.overlay.PointFigure
getZernikeMoment(IterableInterval) - Method in class net.imagej.ops.features.zernike.AbstractZernikeFeature: Computes a specific zernike moment or order n and repitition m
getZm() - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment
getZoomFactor() - Method in class net.imagej.display.DefaultImageCanvas
getZoomFactor() - Method in interface net.imagej.display.Zoomable: Gets the current zoom level.
getZoomPercent() - Method in class net.imagej.plugins.commands.zoom.ZoomSet
getZoomScaleOption() - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer: Implement this in the derived class to get the user's preference for displaying zoom scale (as a fraction or percent)
getZPosition() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMask
gitVersion - Static variable in class net.imagej.ui.swing.updater.UpdaterFrame
GlobalThresholder<T extends RealType<T>> - Class in net.imagej.ops.commands.threshold: TODO: should actually live in a different package!! OR: can this be auto-generated?? (e.g.
GlobalThresholder() - Constructor for class net.imagej.ops.commands.threshold.GlobalThresholder
grab(DatasetView, String) - Method in class net.imagej.ImageGrabber: Creates a merged color Dataset from a DatasetView.
gradients - Variable in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata
GraphBuilder - Class in net.imagej.tensorflow
GraphBuilder(Graph) - Constructor for class net.imagej.tensorflow.GraphBuilder
GRAYS - Static variable in class net.imagej.display.ColorTables
GRAYSCALE - Static variable in class net.imagej.plugins.commands.display.ChannelsTool
greaterThan(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
greaterThan(int, int) - Method in class net.imagej.ops.logic.LogicNamespace
greaterThan(long, long) - Method in class net.imagej.ops.logic.LogicNamespace
greaterThan(float, float) - Method in class net.imagej.ops.logic.LogicNamespace
greaterThan(double, double) - Method in class net.imagej.ops.logic.LogicNamespace
greaterThan(O, I, I) - Method in class net.imagej.ops.logic.LogicNamespace
greaterThanOrEqual(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
greaterThanOrEqual(int, int) - Method in class net.imagej.ops.logic.LogicNamespace
greaterThanOrEqual(long, long) - Method in class net.imagej.ops.logic.LogicNamespace
greaterThanOrEqual(float, float) - Method in class net.imagej.ops.logic.LogicNamespace
greaterThanOrEqual(double, double) - Method in class net.imagej.ops.logic.LogicNamespace
greaterThanOrEqual(O, I, I) - Method in class net.imagej.ops.logic.LogicNamespace
GREEN - Static variable in class net.imagej.display.ColorTables
green - Variable in class net.imagej.ui.swing.updater.DiffView
green(String) - Method in class net.imagej.ui.swing.updater.DiffView: Add some green text.
green(int, String) - Method in class net.imagej.ui.swing.updater.DiffView: Insert some green text.
GroupAction - Interface in net.imagej.updater: A common interface for all actions to be applied to a set of files.
GuoHallThinningStrategy - Class in net.imagej.ops.morphology.thin: Represents the thinning algorithm proposed by Z.
GuoHallThinningStrategy() - Constructor for class net.imagej.ops.morphology.thin.GuoHallThinningStrategy
GuoHallThinningStrategy(boolean) - Constructor for class net.imagej.ops.morphology.thin.GuoHallThinningStrategy: Create a new Guo-Hall thinning strategy.

H

handCursor - Variable in class net.imagej.ui.swing.updater.DiffView

handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Batch

handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Debug

handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Eval

handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Filename

handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.IJPath

handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Macro

handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Port

handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Run

handle(LinkedList<String>) - Method in class net.imagej.legacy.SingleInstanceArgument

handle(CtBehavior) - Method in class net.imagej.patcher.MemoryProfiler

handle(LinkedList<String>) - Method in class net.imagej.server.console.ServerArgument

handle(String) - Method in class net.imagej.updater.Checksummer

Handle a single component, adding conflicts if there are multiple versions.

handle(Checksummer.StringAndFile) - Method in class net.imagej.updater.Checksummer

handleBatchExit(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline

handleBatchOption(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline

handleException(Throwable) - Method in class net.imagej.legacy.IJ1Helper

Delegate exception handling to ImageJ 1.x.

handleException(Throwable) - Method in class net.imagej.legacy.LegacyService

handleException(Throwable) - Method in class net.imagej.ui.swing.updater.SwingUserInterface

handleException(Throwable) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface

handleException(Throwable) - Method in class net.imagej.updater.util.UpdaterUserInterface

handleException(Throwable) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface

handleExtraPluginJars() - Method in class imagej.patcher.LegacyHooks

Deprecated.

Extension point to add to ImageJ 1.x' PluginClassLoader's class path.

handleExtraPluginJars() - Method in class net.imagej.patcher.LegacyHooks

Extension point to add to ImageJ 1.x' PluginClassLoader's class path.

handleNoSuchMethodError(NoSuchMethodError) - Method in class imagej.patcher.EssentialLegacyHooks

Deprecated.

handleNoSuchMethodError(NoSuchMethodError) - Method in class imagej.patcher.LegacyHooks

Deprecated.

Extension point to enhance ImageJ 1.x' error reporting upon NoSuchMethodError.

handleNoSuchMethodError(NoSuchMethodError) - Method in class net.imagej.patcher.LegacyHooks

Extension point to enhance ImageJ 1.x' error reporting upon NoSuchMethodError.

handleQueue() - Method in class net.imagej.updater.Checksummer

haralick() - Method in interface net.imagej.ops.OpEnvironment

Gateway into ops of the "haralick" namespace.

HaralickFeature<T extends RealType<T>> - Interface in net.imagej.ops.features.haralick

Simple marker interface for Haralick Features.

HaralickNamespace - Class in net.imagej.ops.features.haralick

Namespace for Haralick Features

HaralickNamespace() - Constructor for class net.imagej.ops.features.haralick.HaralickNamespace

harmonicMean(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

harmonicMean(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

Harmonizer - Class in net.imagej.legacy.translate

Provides methods for synchronizing data between an ImageDisplay and an ImagePlus.

Harmonizer(Context, ImageTranslator) - Constructor for class net.imagej.legacy.translate.Harmonizer

has(FilesCollection.Filter) - Method in class net.imagej.updater.FilesCollection

hasChanges() - Method in class net.imagej.updater.FilesCollection

hasChanges() - Method in class net.imagej.widget.HistogramBundle

Returns true if the bundle has been changed via use of some of the field setting api.

hasDependency(String) - Method in class net.imagej.updater.FileObject

hasDoubleRepresentation() - Method in interface net.imagej.types.DataType

Returns true if data can be encoded in a double with no precision loss.

hasDoubleRepresentation() - Method in class net.imagej.types.DataType128BitSignedComplexFloat

hasDoubleRepresentation() - Method in class net.imagej.types.DataType12BitUnsignedInteger

hasDoubleRepresentation() - Method in class net.imagej.types.DataType16BitSignedInteger

hasDoubleRepresentation() - Method in class net.imagej.types.DataType16BitUnsignedInteger

hasDoubleRepresentation() - Method in class net.imagej.types.DataType1BitUnsignedInteger

hasDoubleRepresentation() - Method in class net.imagej.types.DataType32BitSignedFloat

hasDoubleRepresentation() - Method in class net.imagej.types.DataType32BitSignedInteger

hasDoubleRepresentation() - Method in class net.imagej.types.DataType32BitUnsignedInteger

hasDoubleRepresentation() - Method in class net.imagej.types.DataType64BitSignedComplexFloat

hasDoubleRepresentation() - Method in class net.imagej.types.DataType64BitSignedFloat

hasDoubleRepresentation() - Method in class net.imagej.types.DataType64BitSignedInteger

hasDoubleRepresentation() - Method in class net.imagej.types.DataType8BitSignedInteger

hasDoubleRepresentation() - Method in class net.imagej.types.DataType8BitUnsignedInteger

hasDoubleRepresentation() - Method in class net.imagej.types.DataTypeBoolean

hasDoubleRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat

hasDoubleRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat

hasDoubleRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger

hasDownloadConflicts() - Method in class net.imagej.updater.Conflicts

hasForcableUpdates() - Method in class net.imagej.updater.FilesCollection

hashCode() - Method in class net.imagej.axis.AbstractCalibratedAxis

hashCode() - Method in class net.imagej.axis.EnumeratedAxis

hashCode() - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper

hashCode() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

hashCode() - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper

hashCode() - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper

hashCode() - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

hashCode() - Method in class net.imagej.legacy.convert.roi.polygon2d.UnmodifiablePolygonRoiWrapper

hashCode() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

hashCode() - Method in class net.imagej.legacy.convert.roi.polyline.UnmodifiablePolylineRoiWrapper

hashCode() - Method in class net.imagej.omero.OMEROLocation

hashCode() - Method in class net.imagej.omero.roi.ellipse.AbstractOMEROEllipse

hashCode() - Method in class net.imagej.omero.roi.line.DefaultOMEROLine

hashCode() - Method in class net.imagej.omero.roi.mask.DefaultOMEROMask

hashCode() - Method in class net.imagej.omero.roi.point.DefaultOMEROPoint

hashCode() - Method in class net.imagej.omero.roi.polyshape.AbstractOMEROPolygon

hashCode() - Method in class net.imagej.omero.roi.polyshape.DefaultOMEROPolyline

hashCode() - Method in class net.imagej.omero.roi.rectangle.AbstractOMERORectangle

hashCode() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet

hashCode() - Method in class net.imagej.ops.OpInfo

hashCode() - Method in class net.imagej.ops.OpRef

hashCode() - Method in class net.imagej.tensorflow.TensorFlowVersion

hashCode() - Method in class net.imagej.updater.FileObject.Version

hashCode() - Method in class net.imagej.updater.UpdateSite

hasImageJUserSiteProtocolUpdates(FilesCollection) - Static method in class net.imagej.updater.util.HTTPSUtil

hasInstance() - Method in class net.imagej.legacy.IJ1Helper

hasLongRepresentation() - Method in interface net.imagej.types.DataType

Returns true if data can be encoded in a long with no precision loss.

hasLongRepresentation() - Method in class net.imagej.types.DataType128BitSignedComplexFloat

hasLongRepresentation() - Method in class net.imagej.types.DataType12BitUnsignedInteger

hasLongRepresentation() - Method in class net.imagej.types.DataType16BitSignedInteger

hasLongRepresentation() - Method in class net.imagej.types.DataType16BitUnsignedInteger

hasLongRepresentation() - Method in class net.imagej.types.DataType1BitUnsignedInteger

hasLongRepresentation() - Method in class net.imagej.types.DataType32BitSignedFloat

hasLongRepresentation() - Method in class net.imagej.types.DataType32BitSignedInteger

hasLongRepresentation() - Method in class net.imagej.types.DataType32BitUnsignedInteger

hasLongRepresentation() - Method in class net.imagej.types.DataType64BitSignedComplexFloat

hasLongRepresentation() - Method in class net.imagej.types.DataType64BitSignedFloat

hasLongRepresentation() - Method in class net.imagej.types.DataType64BitSignedInteger

hasLongRepresentation() - Method in class net.imagej.types.DataType8BitSignedInteger

hasLongRepresentation() - Method in class net.imagej.types.DataType8BitUnsignedInteger

hasLongRepresentation() - Method in class net.imagej.types.DataTypeBoolean

hasLongRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat

hasLongRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat

hasLongRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger

hasMetadataChanges() - Method in class net.imagej.updater.FilesCollection

hasNext() - Method in class net.imagej.ops.image.integral.IntegralCursor

hasNext() - Method in class net.imagej.Position

Returns true if position can be moved forward (i.e.

hasNext() - Method in class net.imagej.updater.FilesCollection.FilteredIterator

hasPrev() - Method in class net.imagej.Position

Returns true if position can be moved backward (i.e.

hasPreviousVersion(String) - Method in class net.imagej.updater.FileObject

hasROIs(Object) - Method in class net.imagej.omero.legacy.LegacyOMEROROIService

hasROIs(Object) - Method in interface net.imagej.roi.ROIService

Check if the given Object is or has ROIs

hasUpdateSitesChanges() - Method in class net.imagej.updater.FilesCollection

hasUpdateSiteURLUpdates(FilesCollection) - Static method in class net.imagej.updater.util.AvailableSites

Checks whether for all update sites of a given FilesCollection there is an updated URL on the remote list of available update sites.

hasUpdateSiteURLUpdates(FilesCollection, Map<String, UpdateSite>) - Static method in class net.imagej.updater.util.AvailableSites

Checks whether for all update sites of a given FilesCollection there is an updated URL on the given list of available sites.

hasUploadableSites() - Method in class net.imagej.updater.FilesCollection

hasUploadConflicts() - Method in class net.imagej.updater.Conflicts

hasUploader(String) - Method in class net.imagej.updater.DefaultUploaderService

hasUploader() - Method in class net.imagej.updater.FilesUploader

hasUploader(String) - Method in interface net.imagej.updater.UploaderService

TODO.

hasUploadOrRemove() - Method in class net.imagej.updater.FilesCollection

haveNetworkConnection() - Static method in class net.imagej.updater.UpToDate

HEADER - Static variable in class net.imagej.mesh.io.stl.STLMeshIO

HEADER_BYTES - Static variable in class net.imagej.mesh.io.stl.STLMeshIO

headers - Variable in class net.imagej.ui.swing.updater.SitesDialog.DataModel

HeadlessGenericDialog - Class in imagej.patcher

Deprecated.

HeadlessGenericDialog() - Constructor for class imagej.patcher.HeadlessGenericDialog

Deprecated.

HeadlessGenericDialog - Class in net.imagej.patcher

Rump implementation of a pseudo dialog intended to stand in for the GenericDialog in headless mode.

HeadlessGenericDialog() - Constructor for class net.imagej.patcher.HeadlessGenericDialog

help() - Static method in class net.imagej.matlab.ImageJMATLAB

help() - Method in class net.imagej.matlab.ImageJMATLABCommands

help(List<OpCandidate>) - Method in class net.imagej.ops.help.AbstractHelp

help(Collection<? extends OpInfo>) - Method in class net.imagej.ops.help.AbstractHelp

help(Op) - Method in interface net.imagej.ops.OpEnvironment

Executes the "help" operation on the given arguments.

help(Namespace) - Method in interface net.imagej.ops.OpEnvironment

Executes the "help" operation on the given arguments.

help() - Method in interface net.imagej.ops.OpEnvironment

Executes the "help" operation on the given arguments.

help(String) - Method in interface net.imagej.ops.OpEnvironment

Executes the "help" operation on the given arguments.

help(String, Class<? extends Op>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "help" operation on the given arguments.

help(String, Class<? extends Op>, Integer) - Method in interface net.imagej.ops.OpEnvironment

Executes the "help" operation on the given arguments.

help(String, Class<? extends Op>, Integer, SpecialOp.Flavor) - Method in interface net.imagej.ops.OpEnvironment

Executes the "help" operation on the given arguments.

HelpCandidates - Class in net.imagej.ops.help

Gets documentation for ops of the given name and/or type.

HelpCandidates() - Constructor for class net.imagej.ops.help.HelpCandidates

helper() - Method in class net.imagej.legacy.ui.AbstractLegacyAdapter

helper() - Method in interface net.imagej.legacy.ui.LegacyAdapter

HelpForNamespace - Class in net.imagej.ops.help

Gets documentation for the given Namespace.

HelpForNamespace() - Constructor for class net.imagej.ops.help.HelpForNamespace

HelpForOp - Class in net.imagej.ops.help

Gets documentation for the given op.

HelpForOp() - Constructor for class net.imagej.ops.help.HelpForOp

HelpSearchActionFactory - Class in net.imagej.legacy.search

Search action for getting help on a SciJava module.

HelpSearchActionFactory() - Constructor for class net.imagej.legacy.search.HelpSearchActionFactory

hessian(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.FilterNamespace

HessianRAI<T extends RealType<T>> - Class in net.imagej.ops.filter.hessian

Hessian filter using the sobel filter with separated kernel.

HessianRAI() - Constructor for class net.imagej.ops.filter.hessian.HessianRAI

hex - Static variable in class net.imagej.updater.util.UpdaterUtil

hexdump(File, File) - Method in class net.imagej.updater.Diff

Make a hex-dump.

hide() - Static method in class net.imagej.launcher.SplashScreen

hideCancelButton() - Method in class imagej.patcher.HeadlessGenericDialog

Deprecated.

hideCancelButton() - Method in class net.imagej.patcher.HeadlessGenericDialog

HilditchThinningStrategy - Class in net.imagej.ops.morphology.thin

An implementation of the Algorithm proposed by C.

HilditchThinningStrategy() - Constructor for class net.imagej.ops.morphology.thin.HilditchThinningStrategy

HilditchThinningStrategy(boolean) - Constructor for class net.imagej.ops.morphology.thin.HilditchThinningStrategy

Create a new hilditch strategy.

histCreator - Variable in class net.imagej.ops.threshold.AbstractApplyThresholdImg

histCreator - Variable in class net.imagej.ops.threshold.LocalThresholdMethodHistogram

histogram(Iterable<T>) - Method in class net.imagej.ops.image.ImageNamespace

Executes the "histogram" operation on the given arguments.

histogram(Iterable<T>, int) - Method in class net.imagej.ops.image.ImageNamespace

Executes the "histogram" operation on the given arguments.

Histogram1dToHTMLConverter - Class in net.imagej.notebook.chart

Converter from Histogram1d to HTMLObject.

Histogram1dToHTMLConverter() - Constructor for class net.imagej.notebook.chart.Histogram1dToHTMLConverter

HistogramBundle - Class in net.imagej.widget

HistogramBundles marry a list of Histogram1ds with addtional rendering information.

HistogramBundle(Histogram1d<?>) - Constructor for class net.imagej.widget.HistogramBundle

HistogramBundle(List<Histogram1d<?>>) - Constructor for class net.imagej.widget.HistogramBundle

HistogramCreate<T extends RealType<T>> - Class in net.imagej.ops.image.histogram

HistogramCreate() - Constructor for class net.imagej.ops.image.histogram.HistogramCreate

HistogramOfOrientedGradients2D<T extends RealType<T>> - Class in net.imagej.ops.features.hog

Calculates a histogram of oriented gradients which is a feature descriptor.

HistogramOfOrientedGradients2D() - Constructor for class net.imagej.ops.features.hog.HistogramOfOrientedGradients2D

HistogramPlot<T extends RealType<T>> - Class in net.imagej.plugins.commands.display

Histogram plotter.

HistogramPlot() - Constructor for class net.imagej.plugins.commands.display.HistogramPlot

HistogramWidget - Interface in net.imagej.widget

Widget interface for charts.

history(List<String>) - Method in class net.imagej.updater.CommandLine

hog(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, int, int) - Method in class net.imagej.ops.features.hog.HogNamespace

Executes the "hog" operation on the given arguments.

hog(RandomAccessibleInterval<T>, int, int) - Method in class net.imagej.ops.features.hog.HogNamespace

Executes the "hog" operation on the given arguments.

HogNamespace - Class in net.imagej.ops.features.hog

Namespace for Histogram of oriented gradients Features

HogNamespace() - Constructor for class net.imagej.ops.features.hog.HogNamespace

Horizon - Class in net.imagej.ops.geom.geom3d.mesh

A Horizon is the result of n neighboring TriangularFacet which are merged.

Horizon(TriangularFacet) - Constructor for class net.imagej.ops.geom.geom3d.mesh.Horizon

Create a new Horizon from a TriangularFacet

horizontalPanel() - Static method in class net.imagej.ui.swing.updater.SwingTools

html(RenderedImage) - Static method in class net.imagej.notebook.Images

html(RenderedImage, String) - Static method in class net.imagej.notebook.Images

HTMLObject - Interface in net.imagej.notebook.mime

An object that knows how to encode itself as an HTML string.

HTTPSUtil - Class in net.imagej.updater.util

HTTPSUtil() - Constructor for class net.imagej.updater.util.HTTPSUtil

Huang() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Huang

huang(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

huang(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

huang(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

huang(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

huang(IterableInterval, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

huang(IterableInterval, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

huMoment1(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

huMoment1(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

huMoment2(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

huMoment2(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

huMoment3(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

huMoment3(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

huMoment4(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

huMoment4(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

huMoment5(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

huMoment5(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

huMoment6(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

huMoment6(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

huMoment7(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

huMoment7(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

hybrid(OpEnvironment, Class<? extends Op>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs

hybrid(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs

hybrid(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<F>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs

hybrid(OpEnvironment, Class<? extends Op>, I, Object...) - Static method in class net.imagej.ops.special.chain.RTs

Hybrids - Class in net.imagej.ops.special.hybrid

Utility class for looking up hybrid ops in a type-safe way.

hyperSliceView(RandomAccessible<T>, int, long) - Method in class net.imagej.ops.transform.TransformNamespace

take a (n-1)-dimensional slice of a n-dimensional view, fixing d-component of coordinates to pos.

hyperSliceView(RandomAccessibleInterval<T>, int, long) - Method in class net.imagej.ops.transform.TransformNamespace

take a (n-1)-dimensional slice of a n-dimensional view, fixing d-component of coordinates to pos and preserving interval bounds.

I

ICE - Static variable in class net.imagej.display.ColorTables

icm1(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

icm1(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

icm2(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

icm2(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

iconPath() - Method in class net.imagej.ops.search.OpSearchResult

icq(Iterable<T>, Iterable<T>, DoubleType, DoubleType) - Method in class net.imagej.ops.coloc.ColocNamespace

icq(Iterable<T>, Iterable<T>, DoubleType) - Method in class net.imagej.ops.coloc.ColocNamespace

icq(Iterable<T>, Iterable<T>) - Method in class net.imagej.ops.coloc.ColocNamespace

identifier() - Method in class net.imagej.ops.search.OpSearchResult

identity(A) - Method in interface net.imagej.ops.OpEnvironment

Executes the "identity" operation on the given arguments.

IdentityAxis - Class in net.imagej.axis

IdentityAxis is a CalibratedAxis whose raw and calibrated values are the same.

IdentityAxis() - Constructor for class net.imagej.axis.IdentityAxis

Constructs a default IdentityAxis of unknown axis type.

IdentityAxis(AxisType) - Constructor for class net.imagej.axis.IdentityAxis

Constructs an IdentityAxis of the specified axis type.

IdentityAxis(AxisType, String) - Constructor for class net.imagej.axis.IdentityAxis

Constructs an IdentityAxis of the specified axis type and unit.

IdentityOp<A> - Interface in net.imagej.ops.identity

A typed "identity" function.

If,O extends Type<O>> - Class in net.imagej.ops.logic

An Op that works the same way as the ?: operator.

If() - Constructor for class net.imagej.ops.logic.If

ifdm(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

ifdm(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

ifft(RandomAccessibleInterval<T>, RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "ifft" operation on the given arguments.

ifft(RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.FilterNamespace

IFFTMethodsOpC<C extends ComplexType<C>,T extends RealType<T>> - Class in net.imagej.ops.filter.ifft

Inverse FFT computer that operates on an RAI and wraps FFTMethods.

IFFTMethodsOpC() - Constructor for class net.imagej.ops.filter.ifft.IFFTMethodsOpC

IFFTMethodsOpI<C extends ComplexType<C>> - Class in net.imagej.ops.filter.ifft

Inverse FFT inplace operator -- complex to complex only, output size must conform to supported FFT size.

IFFTMethodsOpI() - Constructor for class net.imagej.ops.filter.ifft.IFFTMethodsOpI

ignoredConflicts - Variable in class net.imagej.updater.FilesCollection

ignoreResolution(String, FileObject) - Method in class net.imagej.updater.Conflicts

IIAndII() - Constructor for class net.imagej.ops.map.MapBinaryInplace1s.IIAndII

IIAndIIParallel() - Constructor for class net.imagej.ops.map.MapBinaryInplace1s.IIAndIIParallel

IIAndIIToII() - Constructor for class net.imagej.ops.map.MapBinaryComputers.IIAndIIToII

IIAndIIToIIParallel() - Constructor for class net.imagej.ops.map.MapBinaryComputers.IIAndIIToIIParallel

IIAndIIToRAI() - Constructor for class net.imagej.ops.map.MapBinaryComputers.IIAndIIToRAI

IIAndIIToRAIParallel() - Constructor for class net.imagej.ops.map.MapBinaryComputers.IIAndIIToRAIParallel

IIAndRAI() - Constructor for class net.imagej.ops.map.MapBinaryInplace1s.IIAndRAI

IIAndRAIParallel() - Constructor for class net.imagej.ops.map.MapBinaryInplace1s.IIAndRAIParallel

IIAndRAIToII() - Constructor for class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToII

IIAndRAIToIIParallel() - Constructor for class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToIIParallel

IIAndRAIToRAI() - Constructor for class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToRAI

IIAndRAIToRAIParallel() - Constructor for class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToRAIParallel

IIs - Class in net.imagej.ops.special.chain

Utility class for working with IterableIntervals.

IISize,O extends RealType<O>> - Class in net.imagej.ops.stats

Op to calculate the stats.size directly.

IISize() - Constructor for class net.imagej.ops.stats.IISize

IIToII() - Constructor for class net.imagej.ops.map.MapUnaryComputers.IIToII

IIToIIOutputII - Class in net.imagej.ops.logic

Wrapper class for binary logic operations between IterableIntervals and writes result to IterableIntervals.

IIToIIOutputII - Class in net.imagej.ops.math

Wrapper class for binary math operations between IterableIntervals and write result to IterableIntervals.

IIToIIOutputII.Add<T extends NumericType<T>> - Class in net.imagej.ops.math

IIToIIOutputII.And<T extends BooleanType<T>> - Class in net.imagej.ops.logic

IIToIIOutputII.Divide<T extends NumericType<T>> - Class in net.imagej.ops.math

IIToIIOutputII.Multiply<T extends NumericType<T>> - Class in net.imagej.ops.math

IIToIIOutputII.Or<T extends BooleanType<T>> - Class in net.imagej.ops.logic

IIToIIOutputII.Subtract<T extends NumericType<T>> - Class in net.imagej.ops.math

IIToIIOutputII.Xor<T extends BooleanType<T>> - Class in net.imagej.ops.logic

IIToIIParallel() - Constructor for class net.imagej.ops.map.MapUnaryComputers.IIToIIParallel

IIToRAI() - Constructor for class net.imagej.ops.map.MapUnaryComputers.IIToRAI

IIToRAIOutputII - Class in net.imagej.ops.logic

Wrapper class for binary math operations between IterableIntervals and RandomAccessibleIntervals, and writes the result to IterableIntervals.

IIToRAIOutputII - Class in net.imagej.ops.math

Wrapper class for binary math operations between IterableIntervals and RandomAccessibleIntervals, and writes the result to IterableIntervals.

IIToRAIOutputII.Add<T extends NumericType<T>> - Class in net.imagej.ops.math

IIToRAIOutputII.And<T extends NumericType<T>> - Class in net.imagej.ops.logic

IIToRAIOutputII.Divide<T extends NumericType<T>> - Class in net.imagej.ops.math

IIToRAIOutputII.Multiply<T extends NumericType<T>> - Class in net.imagej.ops.math

IIToRAIOutputII.Or<T extends NumericType<T>> - Class in net.imagej.ops.logic

IIToRAIOutputII.Subtract<T extends NumericType<T>> - Class in net.imagej.ops.math

IIToRAIOutputII.Xor<T extends NumericType<T>> - Class in net.imagej.ops.logic

IIToRAIParallel() - Constructor for class net.imagej.ops.map.MapUnaryComputers.IIToRAIParallel

IJ1() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.IJ1

ij1(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

ij1(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

ij1(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

ij1(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

ij1(IterableInterval, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

ij1(IterableInterval, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

IJ1Helper - Class in net.imagej.legacy

A helper class to interact with ImageJ 1.x.

IJ1Helper(LegacyService) - Constructor for class net.imagej.legacy.IJ1Helper

ij1Helper() - Method in class net.imagej.legacy.LegacyCommandline

IJ1MacroEngine - Class in net.imagej.legacy.plugin

A JSR-223-compliant script engine for the ImageJ 1.x macro language.

IJ1MacroEngine(IJ1Helper) - Constructor for class net.imagej.legacy.plugin.IJ1MacroEngine

Constructs an ImageJ 1.x macro engine.

IJ1MacroLanguage - Class in net.imagej.legacy.plugin

Implements a factory for the ImageJ 1.x Macro language engine.

IJ1MacroLanguage() - Constructor for class net.imagej.legacy.plugin.IJ1MacroLanguage

IJBezierTool - Class in net.imagej.ui.swing.overlay

A JHotDraw BezierTool for ImageJ's Swing UI.

IJBezierTool(ImageDisplay, JHotDrawAdapter<BezierFigure>) - Constructor for class net.imagej.ui.swing.overlay.IJBezierTool

IJCreationTool<F extends Figure> - Class in net.imagej.ui.swing.overlay

A JHotDraw CreationTool for ImageJ's Swing UI.

IJCreationTool(ImageDisplay, JHotDrawAdapter<F>) - Constructor for class net.imagej.ui.swing.overlay.IJCreationTool

IJDelegationSelectionTool - Class in net.imagej.ui.swing.overlay

A JHotDraw DelegationSelectionTool for ImageJ's Swing UI.

IJDelegationSelectionTool() - Constructor for class net.imagej.ui.swing.overlay.IJDelegationSelectionTool

IJLineToLineConverter - Class in net.imagej.legacy.convert.roi.line

Converts an ImageJ 1.x Line to an ImgLib2 Line.

IJLineToLineConverter() - Constructor for class net.imagej.legacy.convert.roi.line.IJLineToLineConverter

IJLineToLineOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.IJLineToLineOMEROConverter

IJLineWrapper - Class in net.imagej.legacy.convert.roi.line

Wraps an ImageJ 1.x Line as an ImgLib2 Line.

IJLineWrapper(int, int, int, int) - Constructor for class net.imagej.legacy.convert.roi.line.IJLineWrapper

Creates a new ImageJ 1.x Line with endpoints at the specified integer coordinates, and then wraps this as an ImgLib2 Line.

IJLineWrapper(double, double, double, double) - Constructor for class net.imagej.legacy.convert.roi.line.IJLineWrapper

Creates a new ImageJ 1.x Line with endpoints at the specified real coordinates, and then wraps this as an ImgLib2 Line.

IJLineWrapper(Line) - Constructor for class net.imagej.legacy.convert.roi.line.IJLineWrapper

Wraps the given ImageJ 1.x Line as an ImgLib2 Line.

IJLineWrapperToLineData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.IJLineWrapperToLineData

IJO_VERSION_DESC - Static variable in class net.imagej.omero.roi.ROIConverters

Description value of imagej-omero version tags

IJPath() - Constructor for class net.imagej.legacy.LegacyCommandline.IJPath

IJRealRoiWrapper<R extends Roi> - Interface in net.imagej.legacy.convert.roi

Wraps ImageJ 1.x Rois as ImgLib2 RealMaskRealInterval

ijRoiPoint(double, double) - Static method in class net.imagej.legacy.convert.roi.Rois

Creates a new IJRoiPoint

IJROIToMaskPredicateWrappers - Class in net.imagej.omero.legacy.convert

Converters for converting Roi to MaskPredicate.

IJROIToMaskPredicateWrappers.IJLineToLineOMEROConverter - Class in net.imagej.omero.legacy.convert

Converts a Line to Line

IJROIToMaskPredicateWrappers.OvalRoiToEllipsoidOMEROConverter - Class in net.imagej.omero.legacy.convert

Converts a OvalRoi to WritableEllipsoid

IJROIToMaskPredicateWrappers.PointRoiToRealPointCollectionOMEROConverter - Class in net.imagej.omero.legacy.convert

Converts a PointRoi to RealPointCollection

IJROIToMaskPredicateWrappers.PolygonRoiToPolygon2DOMEROConverter - Class in net.imagej.omero.legacy.convert

Converts a PolygonRoi to Polygon2D

IJROIToMaskPredicateWrappers.PolylineRoiToPolylineOMEROConverter - Class in net.imagej.omero.legacy.convert

Converts a PolygonRoi to Polyline

IJROIToMaskPredicateWrappers.PolylineRoiToRealMaskRealIntervalOMEROConverter - Class in net.imagej.omero.legacy.convert

Converts a PolygonRoi to RealMaskRealInterval

IJROIToMaskPredicateWrappers.RoiToBoxOMEROConverter - Class in net.imagej.omero.legacy.convert

Converts a Roi to Box.

IJROIToMaskPredicateWrappers.RoiToMaskIntervalOMEROConverter - Class in net.imagej.omero.legacy.convert

Converts a Roi to MaskInterval

IJROIToMaskPredicateWrappers.ShapeRoiToMaskRealIntervalOMEROConverter - Class in net.imagej.omero.legacy.convert

Converts a ShapeRoi to RealMaskRealInterval

IJROIToMaskPredicateWrappers.TextRoiToTextRoiWrapperOMEROConverter - Class in net.imagej.omero.legacy.convert

Converts a TextRoi to TextRoiWrapper

IJROIToOverlay - Class in net.imagej.omero.legacy.convert

Converts a Roi to a Overlay.

IJROIToOverlay() - Constructor for class net.imagej.omero.legacy.convert.IJROIToOverlay

IJROIToROITree - Class in net.imagej.omero.legacy.convert

Converts a Roi to a ROITree.

IJROIToROITree() - Constructor for class net.imagej.omero.legacy.convert.IJROIToROITree

IJRoiWrapper<R extends Roi,L> - Interface in net.imagej.legacy.convert.roi

Wraps an ImageJ 1.x Roi as a MaskPredicate.

IJRoiWrapperToShapeData - Class in net.imagej.omero.legacy.convert

Converters which convert IJRoiWrappers to ShapeData, and preserve corresponding settings not represent in MaskPredicate.

IJRoiWrapperToShapeData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData

IJRoiWrapperToShapeData.AbstractIJRoiWrapperToShapeData,S extends ShapeData> - Class in net.imagej.omero.legacy.convert

Abstract base class for converting IJRoiWrapper to ShapeData

IJRoiWrapperToShapeData.DefaultRoiWrapperToMaskData - Class in net.imagej.omero.legacy.convert

Converts DefaultRoiWrapper to MaskData, and preserves settings not represented in MaskPredicate.

IJRoiWrapperToShapeData.IJLineWrapperToLineData - Class in net.imagej.omero.legacy.convert

Converts IJLineWrapper to LineData, and preserves settings not represented in MaskPredicate.

IJRoiWrapperToShapeData.IrregularPolylineRoiWrapperToMaskData - Class in net.imagej.omero.legacy.convert

Converts IrregularPolylineRoiWrapper to MaskData, and preserves settings not represented in MaskPredicate.

IJRoiWrapperToShapeData.OvalRoiWrapperToEllipseData - Class in net.imagej.omero.legacy.convert

Converts OvalRoiWrapper to EllipseData, and preserves settings not represented in MaskPredicate.

IJRoiWrapperToShapeData.PolygonRoiWrapperToPolygonData - Class in net.imagej.omero.legacy.convert

Converts PolygonRoiWrapper to PolygonData, and preserves settings not represented in MaskPredicate.

IJRoiWrapperToShapeData.PolylineRoiWrapperToPolylineData - Class in net.imagej.omero.legacy.convert

Converts PolylineRoiWrapper to PolylineData, and preserves settings not represented in MaskPredicate.

IJRoiWrapperToShapeData.RoiWrapperToRectangleData - Class in net.imagej.omero.legacy.convert

Converts RoiWrapper to RectangleData, and preserves settings not represented in MaskPredicate.

IJRoiWrapperToShapeData.ShapeRoiWrapperToMaskData - Class in net.imagej.omero.legacy.convert

Converts ShapeRoiWrapper to MaskData, and preserves settings not represented in MaskPredicate.

IJRoiWrapperToShapeData.TextRoiWrapperToTextData - Class in net.imagej.omero.legacy.convert

Converts TextRoiWrapper to TextData, and preserves settings not represented in MaskPredicate.

IJRoiWrapperToShapeData.UnmodifiablePolylineRoiWrapperToPolylineData - Class in net.imagej.omero.legacy.convert

Converts UnmodifiablePolylineRoiWrapper to PolylineData, and preserves settings not represented in MaskPredicate.

imag - Variable in class net.imagej.ops.features.zernike.helper.ZernikeMoment

image() - Method in interface net.imagej.ops.OpEnvironment

Gateway into ops of the "image" namespace.

ImageCalculator,V extends RealType<V>> - Class in net.imagej.plugins.commands.calculator

Fills an output Dataset with a combination of two input Datasets.

ImageCalculator() - Constructor for class net.imagej.plugins.commands.calculator.ImageCalculator

ImageCanvas - Interface in net.imagej.display

A canvas upon which an ImageDisplay draws its output.

ImageDisplay - Interface in net.imagej.display

An image display is a Display for visualizing Data objects.

imageDisplay() - Method in class net.imagej.ImageJ

Gets this application context's ImageDisplayService.

ImageDisplayEvent - Class in net.imagej.display.event

An event indicating something has happened to an ImageDisplay.

ImageDisplayEvent(ImageDisplay) - Constructor for class net.imagej.display.event.ImageDisplayEvent

ImageDisplayPanel - Interface in net.imagej.ui.viewer.image

This is a panel that can go inside a display window.

imageDisplayService - Variable in class net.imagej.command.InteractiveImageCommand

ImageDisplayService - Interface in net.imagej.display

Interface for services that work with ImageDisplays.

ImageDisplayToImagePlusConverter - Class in net.imagej.legacy.convert

Converter implementation for converting ImageDisplay to an ImagePlus.

ImageDisplayToImagePlusConverter() - Constructor for class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter

ImageDisplayViewer - Interface in net.imagej.ui.viewer.image

A display viewer for DataViews.

ImageGrabber - Class in net.imagej

An ImageGrabber creates a merged color Dataset from a DatasetView.

ImageGrabber(DatasetService) - Constructor for class net.imagej.ImageGrabber

Constructs an ImageGrabber for a given (@link DatasetService}.

imagej - package imagej

ImageJ - Class in net.imagej

Main entry point into ImageJ2.

ImageJ() - Constructor for class net.imagej.ImageJ

Creates a new application context with all ImageJ2, SCIFIO and SciJava services.

ImageJ(Context) - Constructor for class net.imagej.ImageJ

Creates a new application context which wraps the given existing SciJava context.

imagej.patcher - package imagej.patcher

ImageJ2Options - Class in net.imagej.legacy

Allows the setting and persisting of options relevant to ImageJ2, in ImageJ1.

ImageJ2Options() - Constructor for class net.imagej.legacy.ImageJ2Options

ImageJApp - Class in net.imagej.app

Application metadata about ImageJ2.

ImageJApp() - Constructor for class net.imagej.app.ImageJApp

ImageJMATLAB - Class in net.imagej.matlab

Utility class for properly starting up ImageJ from within MATLAB.

ImageJMATLAB() - Constructor for class net.imagej.matlab.ImageJMATLAB

ImageJMATLABCommands - Class in net.imagej.matlab

MATLABCommands suite for converting ImageJ data structures to MATLAB structures.

ImageJMATLABCommands() - Constructor for class net.imagej.matlab.ImageJMATLABCommands

ImageJMATLABPrefService - Class in net.imagej.matlab

A PrefService implementation specific for use within MATLAB.

ImageJMATLABPrefService() - Constructor for class net.imagej.matlab.ImageJMATLABPrefService

ImageJMATLABService - Interface in net.imagej.matlab

Service for performing utility operations with net.imagej data structures in a MATLAB context.

ImageJPlugin - Interface in net.imagej

Top-level interface for ImageJ2 plugins.

imagejRoot - Variable in class net.imagej.updater.util.Class2JarFilesMap

ImageJServer - Class in net.imagej.server

Entry point to imagej-server.

ImageJServer(Context) - Constructor for class net.imagej.server.ImageJServer

ImageJServerConfiguration - Class in net.imagej.server

Configuration instance for imagej-server by parsing imagej-server.yml

ImageJServerConfiguration() - Constructor for class net.imagej.server.ImageJServerConfiguration

ImageJServerHealthCheck - Class in net.imagej.server.health

ImageJServerHealthCheck() - Constructor for class net.imagej.server.health.ImageJServerHealthCheck

ImageJServerService - Interface in net.imagej.server

Service for ImageJ Server operations.

ImageJService - Interface in net.imagej

Marker interface for all ImageJ2 Services.

ImageJToOMEROEllipse - Class in net.imagej.omero.roi.ellipse

Converts an Ellipsoid to an OMERO EllipseData.

ImageJToOMEROEllipse() - Constructor for class net.imagej.omero.roi.ellipse.ImageJToOMEROEllipse

ImageJToOMEROLine - Class in net.imagej.omero.roi.line

Converts a Line to an OMERO LineData.

ImageJToOMEROLine() - Constructor for class net.imagej.omero.roi.line.ImageJToOMEROLine

ImageJToOMEROPoint - Class in net.imagej.omero.roi.point

Converts a PointMask to an OMERO PointData.

ImageJToOMEROPoint() - Constructor for class net.imagej.omero.roi.point.ImageJToOMEROPoint

ImageJToOMEROPolygon - Class in net.imagej.omero.roi.polyshape

Converts a Polygon2D to an OMERO PolygonData.

ImageJToOMEROPolygon() - Constructor for class net.imagej.omero.roi.polyshape.ImageJToOMEROPolygon

ImageJToOMEROPolyline - Class in net.imagej.omero.roi.polyshape

Converts a Polyline to an OMERO PolylineData.

ImageJToOMEROPolyline() - Constructor for class net.imagej.omero.roi.polyshape.ImageJToOMEROPolyline

ImageJToOMERORectangle - Class in net.imagej.omero.roi.rectangle

Converts an Box to an OMERO RectangleData.

ImageJToOMERORectangle() - Constructor for class net.imagej.omero.roi.rectangle.ImageJToOMERORectangle

ImageJUIService - Interface in net.imagej.ui

Interface for service that manage ImageJ user interfaces.

ImageJUpdater - Class in net.imagej.ui.swing.updater

The Updater.

ImageJUpdater() - Constructor for class net.imagej.ui.swing.updater.ImageJUpdater

ImageJWebsite - Class in net.imagej.plugins.commands.app

Open the ImageJ web site in a browser.

ImageJWebsite() - Constructor for class net.imagej.plugins.commands.app.ImageJWebsite

ImageMetadata - Interface in net.imagej

Metadata relating to channels and intensity scales.

ImageMomentOp<I,O> - Interface in net.imagej.ops.imagemoments

marker interface for image moment ops.

imagemoments() - Method in interface net.imagej.ops.OpEnvironment

Gateway into ops of the "imagemoments" namespace.

ImageMomentsNamespace - Class in net.imagej.ops.imagemoments

The image moments namespace contains ops related to image moments.

ImageMomentsNamespace() - Constructor for class net.imagej.ops.imagemoments.ImageMomentsNamespace

ImageNamespace - Class in net.imagej.ops.image

The image namespace contains operations relating to images.

ImageNamespace() - Constructor for class net.imagej.ops.image.ImageNamespace

ImagePlusCreator - Class in net.imagej.legacy.translate

Creates ImagePluses from ImageDisplay.

ImagePlusCreator(Context) - Constructor for class net.imagej.legacy.translate.ImagePlusCreator

ImagePlusCreatorUtils - Class in net.imagej.legacy.translate

Utility class for ImagePlusCreator.

ImagePlusDisplay - Interface in net.imagej.legacy.display

Marker interface for Display implementations that will be displaying ImagePluses.

ImagePlusDisplayViewer - Class in net.imagej.legacy.display

DisplayViewer implementation for ImagePlus.

ImagePlusDisplayViewer() - Constructor for class net.imagej.legacy.display.ImagePlusDisplayViewer

ImagePlusToDatasetConverter - Class in net.imagej.legacy.convert

Converter implementation for converting ImagePlus to a Dataset.

ImagePlusToDatasetConverter() - Constructor for class net.imagej.legacy.convert.ImagePlusToDatasetConverter

ImagePlusToImageDisplayConverter - Class in net.imagej.legacy.convert

Converter implementation for converting ImagePlus to a ImageDisplay.

ImagePlusToImageDisplayConverter() - Constructor for class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter

Images - Class in net.imagej.notebook

Utility methods for adapting image data structures.

Images - Class in net.imagej.util

Useful methods for working with images.

ImageTitle(ImagePlus) - Constructor for class net.imagej.legacy.convert.ImageTitleToImagePlusConverter.ImageTitle

ImageTitle(ImagePlus) - Constructor for class net.imagej.legacy.convert.StringToImagePlusConverter.ImageTitle

ImageTitleToImagePlusConverter - Class in net.imagej.legacy.convert

Converts an image title to the corresponding ImagePlus object.

ImageTitleToImagePlusConverter() - Constructor for class net.imagej.legacy.convert.ImageTitleToImagePlusConverter

ImageTitleToImagePlusConverter.ImageTitle - Class in net.imagej.legacy.convert

Adapter for ImagePlus that emits the image title when ImageTitleToImagePlusConverter.ImageTitle.toString() is called.

ImageTranslator - Class in net.imagej.legacy.translate

Combines DisplayCreator and ImagePlusCreator.

ImageTranslator(LegacyService) - Constructor for class net.imagej.legacy.translate.ImageTranslator

imageType(IterableInterval<O>, IterableInterval, RealTypeConverter<I, O>) - Method in class net.imagej.ops.convert.ConvertNamespace

img(Img<T>) - Method in class net.imagej.ops.copy.CopyNamespace

img(Img<T>, Img<T>) - Method in class net.imagej.ops.copy.CopyNamespace

img(ArrayImg<T, A>) - Method in class net.imagej.ops.copy.CopyNamespace

img(ArrayImg<T, A>, ArrayImg<T, A>) - Method in class net.imagej.ops.copy.CopyNamespace

img(Integer[]) - Method in class net.imagej.ops.create.CreateNamespace

Creates an Img of type DoubleType with the given dimensions.

img(Long[]) - Method in class net.imagej.ops.create.CreateNamespace

Creates an Img of type DoubleType with the given dimensions.

img(int[]) - Method in class net.imagej.ops.create.CreateNamespace

Creates an Img of type DoubleType with the given dimensions.

img(long[]) - Method in class net.imagej.ops.create.CreateNamespace

Creates an Img of type DoubleType with the given dimensions.

img(Dimensions, T) - Method in class net.imagej.ops.create.CreateNamespace

img(Dimensions, T, ImgFactory<T>) - Method in class net.imagej.ops.create.CreateNamespace

img(IterableInterval<T>) - Method in class net.imagej.ops.create.CreateNamespace

img(Img<T>) - Method in class net.imagej.ops.create.CreateNamespace

img(Interval) - Method in class net.imagej.ops.create.CreateNamespace

img(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.create.CreateNamespace

img() - Method in class net.imagej.table.DefaultResultsTable

img() - Method in interface net.imagej.table.ResultsTable

Wraps the results table in an ImgLib Img.

imgByte(Tensor<UInt8>) - Static method in class net.imagej.tensorflow.Tensors

Creates an image of type ByteType containing the data of a TensorFlow Tensor with the data type DataType.UINT8.

imgByte(Tensor<UInt8>, int[]) - Static method in class net.imagej.tensorflow.Tensors

Creates an image of type ByteType containing the data of a TensorFlow Tensor with the data type DataType.UINT8.

imgByteDirect(Tensor<UInt8>) - Static method in class net.imagej.tensorflow.Tensors

Creates an image of type ByteType containing the data of a TensorFlow Tensor with the data type DataType.UINT8.

imgCreator - Variable in class net.imagej.ops.threshold.AbstractApplyThresholdImg

imgDouble(Tensor<Double>) - Static method in class net.imagej.tensorflow.Tensors

Creates an image of type DoubleType containing the data of a TensorFlow Tensor with the data type DataType.DOUBLE.

imgDouble(Tensor<Double>, int[]) - Static method in class net.imagej.tensorflow.Tensors

Creates an image of type DoubleType containing the data of a TensorFlow Tensor with the data type DataType.DOUBLE.

imgDoubleDirect(Tensor<Double>) - Static method in class net.imagej.tensorflow.Tensors

Creates an image of type DoubleType containing the data of a TensorFlow Tensor with the data type DataType.DOUBLE.

imgFactory(S) - Method in class net.imagej.DatasetImgFactory

imgFactory() - Method in class net.imagej.ops.create.CreateNamespace

imgFactory(Dimensions) - Method in class net.imagej.ops.create.CreateNamespace

imgFactory(Img<T>) - Method in class net.imagej.ops.create.CreateNamespace

imgFloat(Tensor<Float>) - Static method in class net.imagej.tensorflow.Tensors

Creates an image of type FloatType containing the data of a TensorFlow Tensor with the data type DataType.FLOAT.

imgFloat(Tensor<Float>, int[]) - Static method in class net.imagej.tensorflow.Tensors

Creates an image of type FloatType containing the data of a TensorFlow Tensor with the data type DataType.FLOAT.

imgFloatDirect(Tensor<Float>) - Static method in class net.imagej.tensorflow.Tensors

Creates an image of type FloatType containing the data of a TensorFlow Tensor with the data type DataType.FLOAT.

ImgImgFactory<T extends Type<T>,V extends Type<V>> - Class in net.imagej.ops.bufferfactories

UnaryOutputFactory used to create an empty output Img of type <V> and the dimensionality of the input Img

ImgImgFactory(V) - Constructor for class net.imagej.ops.bufferfactories.ImgImgFactory

ImgImgSameTypeFactory<T extends Type<T>> - Class in net.imagej.ops.bufferfactories

UnaryOutputFactory used to create an empty output Img of same type and dimensionality as the input Img.

ImgImgSameTypeFactory() - Constructor for class net.imagej.ops.bufferfactories.ImgImgSameTypeFactory

imgInt(Tensor<Integer>) - Static method in class net.imagej.tensorflow.Tensors

Creates an image of type IntType containing the data of a TensorFlow Tensor with the data type DataType.INT32.

imgInt(Tensor<Integer>, int[]) - Static method in class net.imagej.tensorflow.Tensors

Creates an image of type IntType containing the data of a TensorFlow Tensor with the data type DataType.INT32.

imgIntDirect(Tensor<Integer>) - Static method in class net.imagej.tensorflow.Tensors

Creates an image of type IntType containing the data of a TensorFlow Tensor with the data type DataType.INT32.

imgLabeling(ImgLabeling<L, I>) - Method in class net.imagej.ops.copy.CopyNamespace

imgLabeling(ImgLabeling<L, I>, ImgLabeling<L, I>) - Method in class net.imagej.ops.copy.CopyNamespace

imgLabeling(Dimensions) - Method in class net.imagej.ops.create.CreateNamespace

imgLabeling(Dimensions, T) - Method in class net.imagej.ops.create.CreateNamespace

imgLabeling(Dimensions, T, ImgFactory<T>) - Method in class net.imagej.ops.create.CreateNamespace

imgLabeling(Dimensions, T, ImgFactory<T>, int) - Method in class net.imagej.ops.create.CreateNamespace

imgLabeling(Interval) - Method in class net.imagej.ops.create.CreateNamespace

imgLabeling(Interval, T) - Method in class net.imagej.ops.create.CreateNamespace

imgLabeling(Interval, T, ImgFactory<T>) - Method in class net.imagej.ops.create.CreateNamespace

imgLabeling(Interval, T, ImgFactory<T>, int) - Method in class net.imagej.ops.create.CreateNamespace

ImgLabelingToImgConverter<T extends IntegerType<T>> - Class in net.imagej.convert

This Converter converts an ImgLabeling to an Img.

ImgLabelingToImgConverter() - Constructor for class net.imagej.convert.ImgLabelingToImgConverter

ImgLibDataTransform - Class in net.imagej.plugins.commands.imglib

Runs an ImgLib OutputAlgorithm, assigning the created image to the input Dataset.

ImgLibDataTransform(Dataset, OutputAlgorithm<Img<? extends RealType<?>>>) - Constructor for class net.imagej.plugins.commands.imglib.ImgLibDataTransform

imgLong(Tensor<Long>) - Static method in class net.imagej.tensorflow.Tensors

Creates an image of type LongType containing the data of a TensorFlow Tensor with the data type DataType.INT64.

imgLong(Tensor<Long>, int[]) - Static method in class net.imagej.tensorflow.Tensors

Creates an image of type LongType containing the data of a TensorFlow Tensor with the data type DataType.INT64.

imgLongDirect(Tensor<Long>) - Static method in class net.imagej.tensorflow.Tensors

Creates an image of type LongType containing the data of a TensorFlow Tensor with the data type DataType.INT64.

ImgPlus<T> - Class in net.imagej

A simple container for storing an Img together with its metadata.

ImgPlus(Img<T>) - Constructor for class net.imagej.ImgPlus

ImgPlus(Img<T>, String) - Constructor for class net.imagej.ImgPlus

ImgPlus(Img<T>, String, AxisType[]) - Constructor for class net.imagej.ImgPlus

ImgPlus(Img<T>, ImgPlusMetadata) - Constructor for class net.imagej.ImgPlus

ImgPlus(Img<T>, ImgPlusMetadata, boolean) - Constructor for class net.imagej.ImgPlus

As ImgPlus(Img, ImgPlusMetadata) but with a flag to determine if metadata beyond axis information is copied.

ImgPlus(Img<T>, String, AxisType[], double[]) - Constructor for class net.imagej.ImgPlus

ImgPlus(Img<T>, String, AxisType[], double[], String[]) - Constructor for class net.imagej.ImgPlus

ImgPlus(Img<T>, String, CalibratedAxis...) - Constructor for class net.imagej.ImgPlus

imgPlus(Img<T>) - Method in class net.imagej.ops.create.CreateNamespace

imgPlus(Img<T>, ImgPlusMetadata) - Method in class net.imagej.ops.create.CreateNamespace

ImgPlusMetadata - Interface in net.imagej

An interface which collects all metadata associated with an ImgPlus.

ImgPlusService - Interface in net.imagej

ImgPlusService is an ImageJService that allows one to cast weakly typed ImgPluses to more strongly typed versions.

Imgs - Class in net.imagej.ops.create.img

Utility methods for working with Img objects.

ImgToImgLabelingConverter<T extends IntegerType<T>> - Class in net.imagej.convert

This Converter converts an Img to an ImgLabeling.

ImgToImgLabelingConverter() - Constructor for class net.imagej.convert.ImgToImgLabelingConverter

IMP_KEY - Static variable in class net.imagej.legacy.LegacyImageMap

Key for storing ImagePlus instances in a Dataset's map.

in() - Method in interface net.imagej.ops.special.BinaryInput

in() - Method in class net.imagej.ops.special.computer.AbstractUnaryComputerOp

in() - Method in class net.imagej.ops.special.function.AbstractUnaryFunctionOp

in() - Method in class net.imagej.ops.special.hybrid.AbstractUnaryHybridC

in() - Method in interface net.imagej.ops.special.inplace.BinaryInplace1Op

in() - Method in interface net.imagej.ops.special.inplace.UnaryInplaceOp

in() - Method in interface net.imagej.ops.special.UnaryInput

in - Variable in class net.imagej.updater.util.InputStream2OutputStream

in1() - Method in interface net.imagej.ops.special.BinaryInput

in1() - Method in class net.imagej.ops.special.computer.AbstractBinaryComputerOp

in1() - Method in class net.imagej.ops.special.function.AbstractBinaryFunctionOp

in1() - Method in class net.imagej.ops.special.hybrid.AbstractBinaryHybridC

in1() - Method in interface net.imagej.ops.special.inplace.BinaryInplace1Op

in2() - Method in interface net.imagej.ops.special.BinaryInput

in2() - Method in class net.imagej.ops.special.computer.AbstractBinaryComputerOp

in2() - Method in class net.imagej.ops.special.function.AbstractBinaryFunctionOp

in2() - Method in class net.imagej.ops.special.hybrid.AbstractBinaryHybridC

in2() - Method in class net.imagej.ops.special.inplace.AbstractBinaryInplace1Op

inc() - Method in class net.imagej.types.PreciseFixedFloatType

inc() - Method in class net.imagej.types.UnboundedIntegerType

incrementCounter() - Method in class net.imagej.legacy.convert.TableWrapper

incrementReferences() - Method in class net.imagej.AbstractData

incrementReferences() - Method in interface net.imagej.Data

Adds to the data object's reference count.

indented - Variable in class net.imagej.ui.swing.updater.ConflictDialog

index() - Method in interface net.imagej.mesh.Triangle

Index into the mesh's list of triangles.

index() - Method in interface net.imagej.mesh.Vertex

Index into the mesh's list of vertices.

indexOf(Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

indexOf(Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

indexOf(Object) - Method in class net.imagej.legacy.convert.TableListWrapper

indexOf(Object) - Method in class net.imagej.omero.LazyTableList

indexOf(int[], int) - Method in class net.imagej.ui.swing.updater.FileTable

indices() - Method in class net.imagej.mesh.nio.BufferMesh.Triangles

info(Class<? extends Op>) - Method in class net.imagej.ops.CustomOpEnvironment

info(Class<? extends Op>) - Method in class net.imagej.ops.DefaultOpService

info(Class<? extends Op>) - Method in interface net.imagej.ops.OpEnvironment

Gets the metadata for a given Op class.

info(Op) - Method in interface net.imagej.ops.OpEnvironment

Gets the metadata for a given Op.

info() - Method in class net.imagej.ops.search.OpSearchResult

info(String) - Method in class net.imagej.ui.swing.updater.SitesDialog

info(String, String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface

info(String) - Method in class net.imagej.ui.swing.updater.UpdaterFrame

info(String, String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface

info(String, String) - Method in class net.imagej.updater.util.UpdaterUserInterface

info(String, String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface

infos() - Method in class net.imagej.ops.CustomOpEnvironment

infos() - Method in class net.imagej.ops.DefaultOpService

infos() - Method in interface net.imagej.ops.OpEnvironment

The available ops for the context, including those of the parent.

inHeader - Variable in class net.imagej.ui.swing.updater.DiffView

init() - Method in class net.imagej.lut.LUTSelector

init() - Method in class net.imagej.plugins.commands.debug.MandelbrotSetImage

init() - Method in class net.imagej.plugins.commands.imglib.Binner

init() - Method in class net.imagej.plugins.commands.imglib.ResizeImage

init() - Method in class net.imagej.plugins.commands.imglib.ResliceImage

init() - Method in class net.imagej.plugins.commands.imglib.TranslateImage

init() - Method in class net.imagej.plugins.commands.io.NewImage

init() - Method in class net.imagej.plugins.commands.typechange.TypeChanger

init() - Method in class net.imagej.plugins.tools.FloodFillToolConfig

init() - Method in class net.imagej.plugins.tools.PaintBrushToolConfig

init() - Method in class net.imagej.plugins.tools.PencilToolConfig

initAll() - Method in class net.imagej.plugins.commands.restructure.AddAxis

initAll() - Method in class net.imagej.plugins.commands.restructure.AddData

initAll() - Method in class net.imagej.plugins.commands.restructure.DeleteAxis

initAll() - Method in class net.imagej.plugins.commands.restructure.DeleteData

initAll() - Method in class net.imagej.plugins.commands.zoom.ZoomSet

initAll() - Method in class net.imagej.plugins.tools.SprayCanToolConfig

initAxes() - Method in class net.imagej.plugins.commands.restructure.FlipAxis

initAxes() - Method in class net.imagej.plugins.commands.restructure.ReorderAxis

initAxes() - Method in class net.imagej.plugins.commands.restructure.ReorderData

initAxisName() - Method in class net.imagej.plugins.commands.animation.AnimationOptions

Initializes axisName value.

initAxisName() - Method in class net.imagej.plugins.commands.axispos.SetActiveAxis

initBackAndForth() - Method in class net.imagej.plugins.commands.animation.AnimationOptions

Initializes backAndForth value.

initBundle() - Method in class net.imagej.plugins.commands.display.HistogramPlot

initColorTables(Dataset) - Static method in class net.imagej.legacy.translate.DatasetUtils

Allocates the color table array within a new planar Dataset (one table per plane).

initDefaultSettings(F) - Method in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter

initFields() - Method in class net.imagej.plugins.commands.restructure.EditAxes

initFirst() - Method in class net.imagej.plugins.commands.animation.AnimationOptions

Initializes first value.

initFPS() - Method in class net.imagej.plugins.commands.animation.AnimationOptions

Initializes fps value.

Initializable - Interface in net.imagej.ops

Interface for objects which can be initialized.

InitializablePreprocessor() - Constructor for class net.imagej.server.resources.ModulesResource.InitializablePreprocessor

initialize() - Method in class net.imagej.animation.DefaultAnimationService

initialize() - Method in class net.imagej.DefaultDatasetService

initialize() - Method in class net.imagej.DefaultImgPlusService

initialize(Data) - Method in class net.imagej.display.AbstractDataView

initialize(Data) - Method in interface net.imagej.display.DataView

Initializes the view with the given Data.

initialize() - Method in class net.imagej.display.DefaultImageDisplayService

initialize() - Method in class net.imagej.display.DefaultWindowService

initialize() - Method in class net.imagej.legacy.IJ1Helper

initialize() - Method in class net.imagej.legacy.LegacyService

initialize() - Method in class net.imagej.lut.DefaultLUTService

initialize(Img<T>, T, T) - Method in class net.imagej.minmax.DefaultMinMaxMethod

initialize(IterableInterval<T>, T, T) - Method in class net.imagej.minmax.DefaultMinMaxMethod

initialize(RandomAccessibleInterval<T>, T, T) - Method in class net.imagej.minmax.DefaultMinMaxMethod

initialize(Img<T>) - Method in class net.imagej.minmax.DefaultMinMaxMethod

initialize(IterableInterval<T>) - Method in class net.imagej.minmax.DefaultMinMaxMethod

initialize(RandomAccessibleInterval<T>) - Method in class net.imagej.minmax.DefaultMinMaxMethod

initialize(Img<T>, T, T) - Method in interface net.imagej.minmax.MinMaxMethod

Sets the provided Img as the target interval for computation, as well as initial min and max values.

initialize(IterableInterval<T>, T, T) - Method in interface net.imagej.minmax.MinMaxMethod

Sets the target interval for computation, as well as initial min and max values.

initialize(RandomAccessibleInterval<T>, T, T) - Method in interface net.imagej.minmax.MinMaxMethod

Sets the target interval for computation, as well as initial min and max values.

initialize(Img<T>) - Method in interface net.imagej.minmax.MinMaxMethod

Sets the provided Img as the target interval for computation.

initialize(IterableInterval<T>) - Method in interface net.imagej.minmax.MinMaxMethod

Sets the target interval for computation.

initialize(RandomAccessibleInterval<T>) - Method in interface net.imagej.minmax.MinMaxMethod

Sets the target interval for computation.

initialize() - Method in class net.imagej.notebook.DefaultNotebookService

initialize() - Method in class net.imagej.ops.convert.imageType.ConvertIIs

initialize() - Method in class net.imagej.ops.convert.normalizeScale.NormalizeScaleRealTypes

initialize() - Method in class net.imagej.ops.copy.CopyII

initialize() - Method in class net.imagej.ops.copy.CopyImg

initialize() - Method in class net.imagej.ops.copy.CopyImgLabeling

initialize() - Method in class net.imagej.ops.copy.CopyLabelingMapping

initialize() - Method in class net.imagej.ops.copy.CopyRAI

initialize() - Method in class net.imagej.ops.create.img.CreateImgFromDimsAndType

initialize() - Method in class net.imagej.ops.create.imgLabeling.CreateImgLabelingFromInterval

initialize() - Method in class net.imagej.ops.create.imgLabeling.DefaultCreateImgLabeling

initialize() - Method in class net.imagej.ops.create.kernel.CreateKernel2D

initialize() - Method in class net.imagej.ops.create.kernelBiGauss.DefaultCreateKernel2ndDerivBiGauss

initialize() - Method in class net.imagej.ops.create.kernelBiGauss.DefaultCreateKernelBiGauss

initialize() - Method in class net.imagej.ops.create.kernelDiffraction.DefaultCreateKernelGibsonLanni

initialize() - Method in class net.imagej.ops.create.kernelGabor.CreateKernelGaborIsotropic

initialize() - Method in class net.imagej.ops.create.kernelGabor.DefaultCreateKernelGabor

initialize() - Method in class net.imagej.ops.create.kernelGauss.CreateKernelGaussSymmetric

initialize() - Method in class net.imagej.ops.create.kernelGauss.DefaultCreateKernelGauss

initialize() - Method in class net.imagej.ops.create.kernelLog.CreateKernelLogSymmetric

initialize() - Method in class net.imagej.ops.create.kernelLog.DefaultCreateKernelLog

initialize() - Method in class net.imagej.ops.create.kernelSobel.CreateKernelSobel

initialize() - Method in class net.imagej.ops.create.labelingMapping.DefaultCreateLabelingMapping

initialize() - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator

initialize(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator

initialize() - Method in class net.imagej.ops.deconvolve.NonCirculantFirstGuess

initialize() - Method in class net.imagej.ops.deconvolve.NonCirculantNormalizationFactor

initialize() - Method in class net.imagej.ops.deconvolve.PadAndRichardsonLucy

initialize() - Method in class net.imagej.ops.deconvolve.RichardsonLucyC

initialize() - Method in class net.imagej.ops.deconvolve.RichardsonLucyCorrection

initialize() - Method in class net.imagej.ops.deconvolve.RichardsonLucyUpdate

initialize() - Method in class net.imagej.ops.eval.DefaultEval

initialize() - Method in class net.imagej.ops.features.haralick.AbstractHaralickFeature

initialize() - Method in class net.imagej.ops.features.haralick.DefaultClusterPromenence

initialize() - Method in class net.imagej.ops.features.haralick.DefaultClusterShade

initialize() - Method in class net.imagej.ops.features.haralick.DefaultContrast

initialize() - Method in class net.imagej.ops.features.haralick.DefaultCorrelation

initialize() - Method in class net.imagej.ops.features.haralick.DefaultDifferenceEntropy

initialize() - Method in class net.imagej.ops.features.haralick.DefaultDifferenceVariance

initialize() - Method in class net.imagej.ops.features.haralick.DefaultICM1

initialize() - Method in class net.imagej.ops.features.haralick.DefaultICM2

initialize() - Method in class net.imagej.ops.features.haralick.DefaultSumAverage

initialize() - Method in class net.imagej.ops.features.haralick.DefaultSumEntropy

initialize() - Method in class net.imagej.ops.features.haralick.DefaultSumVariance

initialize() - Method in class net.imagej.ops.features.haralick.helper.CoocHXY

initialize() - Method in class net.imagej.ops.features.haralick.helper.CoocMeanX

initialize() - Method in class net.imagej.ops.features.haralick.helper.CoocMeanY

initialize() - Method in class net.imagej.ops.features.haralick.helper.CoocStdX

initialize() - Method in class net.imagej.ops.features.haralick.helper.CoocStdY

initialize() - Method in class net.imagej.ops.features.hog.HistogramOfOrientedGradients2D

initialize() - Method in class net.imagej.ops.features.lbp2d.DefaultLBP2D

initialize() - Method in class net.imagej.ops.features.tamura2d.DefaultContrastFeature

initialize() - Method in class net.imagej.ops.features.tamura2d.DefaultDirectionalityFeature

initialize() - Method in class net.imagej.ops.features.zernike.helper.ZernikeComputer

initialize() - Method in class net.imagej.ops.filter.AbstractCenterAwareNeighborhoodBasedFilter

initialize() - Method in class net.imagej.ops.filter.AbstractNeighborhoodBasedFilter

initialize() - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter

initialize() - Method in class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseMap

initialize() - Method in class net.imagej.ops.filter.convolve.ConvolveNaiveF

initialize() - Method in class net.imagej.ops.filter.convolve.PadAndConvolveFFT

initialize() - Method in class net.imagej.ops.filter.convolve.PadAndConvolveFFTF

initialize() - Method in class net.imagej.ops.filter.correlate.CorrelateFFTC

initialize() - Method in class net.imagej.ops.filter.correlate.PadAndCorrelateFFT

initialize() - Method in class net.imagej.ops.filter.derivative.PartialDerivativeRAI

initialize() - Method in class net.imagej.ops.filter.derivative.PartialDerivativesRAI

initialize() - Method in class net.imagej.ops.filter.dog.DoGSingleSigmas

initialize() - Method in class net.imagej.ops.filter.fft.CreateOutputFFTMethods

initialize() - Method in class net.imagej.ops.filter.fft.FFTMethodsOpF

initialize() - Method in class net.imagej.ops.filter.FFTMethodsLinearFFTFilterC

initialize() - Method in class net.imagej.ops.filter.gauss.GaussRAISingleSigma

initialize() - Method in class net.imagej.ops.filter.hessian.HessianRAI

initialize() - Method in class net.imagej.ops.filter.ifft.IFFTMethodsOpC

initialize() - Method in class net.imagej.ops.filter.pad.DefaultPadInputFFT

initialize() - Method in class net.imagej.ops.filter.pad.DefaultPadShiftKernelFFT

initialize() - Method in class net.imagej.ops.filter.pad.PadInput

initialize() - Method in class net.imagej.ops.filter.pad.PadInputFFT

initialize() - Method in class net.imagej.ops.filter.pad.PadInputFFTMethods

initialize() - Method in class net.imagej.ops.filter.pad.PadShiftKernel

initialize() - Method in class net.imagej.ops.filter.pad.PadShiftKernelFFTMethods

initialize() - Method in class net.imagej.ops.filter.sobel.SobelRAI

initialize() - Method in class net.imagej.ops.geom.AbstractBoundarySizeConvexHull

initialize() - Method in class net.imagej.ops.geom.AbstractBoxivity

initialize() - Method in class net.imagej.ops.geom.AbstractConvexity

initialize() - Method in class net.imagej.ops.geom.AbstractSizeConvexHull

initialize() - Method in class net.imagej.ops.geom.AbstractSolidity

initialize() - Method in class net.imagej.ops.geom.CentroidMesh

initialize() - Method in class net.imagej.ops.geom.CentroidPolygon

initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultCircularity

initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultEccentricity

initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultElongation

initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultFeretsDiameterForAngle

initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultMajorAxis

initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeret

initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeretAngle

initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeretDiameter

initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeret

initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeretAngle

initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeretDiameter

initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultMinorAxis

initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultRoundness

initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultSmallestEnclosingRectangle

initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultVerticesCountConvexHullPolygon

initialize() - Method in class net.imagej.ops.geom.geom3d.DefaultCompactness

initialize() - Method in class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3D

initialize() - Method in class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3DMesh

initialize() - Method in class net.imagej.ops.geom.geom3d.DefaultMainElongation

initialize() - Method in class net.imagej.ops.geom.geom3d.DefaultMedianElongation

initialize() - Method in class net.imagej.ops.geom.geom3d.DefaultSparenessMesh

initialize() - Method in class net.imagej.ops.geom.geom3d.DefaultSphericity

initialize() - Method in class net.imagej.ops.geom.geom3d.DefaultVerticesCountConvexHullMesh

initialize() - Method in class net.imagej.ops.image.ascii.DefaultASCII

initialize() - Method in class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix2D

initialize() - Method in class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix3D

initialize() - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransform

initialize() - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransformCalibration

initialize() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2D

initialize() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2DCalibration

initialize() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3D

initialize() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3DCalibration

initialize() - Method in class net.imagej.ops.image.equation.DefaultXYEquation

initialize() - Method in class net.imagej.ops.image.fill.DefaultFill

initialize() - Method in class net.imagej.ops.image.histogram.HistogramCreate

initialize() - Method in class net.imagej.ops.image.integral.AbstractIntegralImg

initialize() - Method in class net.imagej.ops.image.normalize.NormalizeIIComputer

initialize() - Method in class net.imagej.ops.image.normalize.NormalizeIIFunction

initialize() - Method in class net.imagej.ops.image.watershed.Watershed

initialize() - Method in class net.imagej.ops.image.watershed.WatershedBinary

initialize() - Method in class net.imagej.ops.image.watershed.WatershedBinarySingleSigma

initialize() - Method in class net.imagej.ops.image.watershed.WatershedSeeded

initialize() - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment00

initialize() - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment02

initialize() - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment03

initialize() - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment11

initialize() - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment12

initialize() - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment20

initialize() - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment21

initialize() - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment30

initialize() - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment1

initialize() - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment2

initialize() - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment3

initialize() - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment4

initialize() - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment5

initialize() - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment6

initialize() - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment7

initialize() - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment02

initialize() - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment03

initialize() - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment11

initialize() - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment12

initialize() - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment20

initialize() - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment21

initialize() - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment30

initialize() - Method in interface net.imagej.ops.Initializable

Initializes the object.

initialize() - Method in class net.imagej.ops.labeling.cca.DefaultCCA

initialize() - Method in class net.imagej.ops.labeling.MergeLabeling

initialize() - Method in class net.imagej.ops.logic.IIToIIOutputII.And

initialize() - Method in class net.imagej.ops.logic.IIToIIOutputII.Or

initialize() - Method in class net.imagej.ops.logic.IIToIIOutputII.Xor

initialize() - Method in class net.imagej.ops.logic.IIToRAIOutputII.And

initialize() - Method in class net.imagej.ops.logic.IIToRAIOutputII.Or

initialize() - Method in class net.imagej.ops.logic.IIToRAIOutputII.Xor

initialize() - Method in class net.imagej.ops.map.neighborhood.DefaultMapNeighborhood

initialize() - Method in class net.imagej.ops.map.neighborhood.MapNeighborhoodWithCenter

initialize() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Add

initialize() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Divide

initialize() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Multiply

initialize() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Subtract

initialize() - Method in class net.imagej.ops.math.IIToIIOutputII.Add

initialize() - Method in class net.imagej.ops.math.IIToIIOutputII.Divide

initialize() - Method in class net.imagej.ops.math.IIToIIOutputII.Multiply

initialize() - Method in class net.imagej.ops.math.IIToIIOutputII.Subtract

initialize() - Method in class net.imagej.ops.math.IIToRAIOutputII.Add

initialize() - Method in class net.imagej.ops.math.IIToRAIOutputII.Divide

initialize() - Method in class net.imagej.ops.math.IIToRAIOutputII.Multiply

initialize() - Method in class net.imagej.ops.math.IIToRAIOutputII.Subtract

initialize() - Method in class net.imagej.ops.math.multiply.ComplexConjugateMultiplyMap

initialize() - Method in class net.imagej.ops.morphology.blackTopHat.ListBlackTopHat

initialize() - Method in class net.imagej.ops.morphology.close.ListClose

initialize() - Method in class net.imagej.ops.morphology.dilate.DefaultDilate

initialize() - Method in class net.imagej.ops.morphology.dilate.ListDilate

initialize() - Method in class net.imagej.ops.morphology.erode.DefaultErode

initialize() - Method in class net.imagej.ops.morphology.erode.ListErode

initialize() - Method in class net.imagej.ops.morphology.extractHoles.DefaultExtractHolesComputer

initialize() - Method in class net.imagej.ops.morphology.extractHoles.DefaultExtractHolesFunction

initialize() - Method in class net.imagej.ops.morphology.fillHoles.DefaultFillHoles

initialize() - Method in class net.imagej.ops.morphology.floodFill.DefaultFloodFill

initialize() - Method in class net.imagej.ops.morphology.open.ListOpen

initialize() - Method in class net.imagej.ops.morphology.thin.ThinGuoHall

initialize() - Method in class net.imagej.ops.morphology.thin.ThinHilditch

initialize() - Method in class net.imagej.ops.morphology.thin.ThinMorphological

initialize() - Method in class net.imagej.ops.morphology.thin.ThinZhangSuen

initialize() - Method in class net.imagej.ops.morphology.topHat.ListTopHat

initialize() - Method in class net.imagej.ops.slice.SliceRAI2RAI

initialize() - Method in class net.imagej.ops.special.chain.BCViaBC

initialize() - Method in class net.imagej.ops.special.chain.BFViaBC

initialize() - Method in class net.imagej.ops.special.chain.BFViaBF

initialize() - Method in class net.imagej.ops.special.chain.BHCFViaBC

initialize() - Method in class net.imagej.ops.special.chain.BHCFViaBHCF

initialize() - Method in class net.imagej.ops.special.chain.BIOViaBI

initialize() - Method in class net.imagej.ops.special.chain.UCViaUC

initialize() - Method in class net.imagej.ops.special.chain.UFViaUC

initialize() - Method in class net.imagej.ops.special.chain.UFViaUF

initialize() - Method in class net.imagej.ops.special.chain.UHCFViaUC

initialize() - Method in class net.imagej.ops.special.chain.UHCFViaUHCF

initialize() - Method in class net.imagej.ops.special.chain.UIOViaUI

initialize() - Method in class net.imagej.ops.stats.DefaultGeometricMean

initialize() - Method in class net.imagej.ops.stats.DefaultHarmonicMean

initialize() - Method in class net.imagej.ops.stats.DefaultKurtosis

initialize() - Method in class net.imagej.ops.stats.DefaultMean

initialize() - Method in class net.imagej.ops.stats.DefaultMoment1AboutMean

initialize() - Method in class net.imagej.ops.stats.DefaultMoment2AboutMean

initialize() - Method in class net.imagej.ops.stats.DefaultMoment3AboutMean

initialize() - Method in class net.imagej.ops.stats.DefaultMoment4AboutMean

initialize() - Method in class net.imagej.ops.stats.DefaultPercentile

initialize() - Method in class net.imagej.ops.stats.DefaultSkewness

initialize() - Method in class net.imagej.ops.stats.DefaultStandardDeviation

initialize() - Method in class net.imagej.ops.stats.DefaultVariance

initialize() - Method in class net.imagej.ops.threshold.AbstractApplyThresholdImg

initialize() - Method in class net.imagej.ops.threshold.apply.ApplyConstantThreshold

initialize() - Method in class net.imagej.ops.threshold.apply.LocalThresholdIntegral

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Huang

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.IJ1

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Intermodes

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.IsoData

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Li

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.MaxEntropy

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.MaxLikelihood

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Mean

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.MinError

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Minimum

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Moments

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Otsu

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Percentile

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.RenyiEntropy

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Rosin

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Shanbhag

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Triangle

initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Yen

initialize() - Method in class net.imagej.ops.threshold.LocalThresholdMethodHistogram

initialize() - Method in class net.imagej.ops.transform.crop.CropImgPlus

initialize() - Method in class net.imagej.render.DummyRenderingService

initialize(Bootstrap<ImageJServerConfiguration>) - Method in class net.imagej.server.ImageJServer

initialize(Context) - Method in class net.imagej.server.resources.ModulesResource

Initialize resource by injection.

initialize(Context) - Method in class net.imagej.server.resources.ObjectsResource

Initialize resource by injection.

initialize() - Method in class net.imagej.types.DefaultDataTypeService

initializeAndAddSites(FilesCollection, Logger) - Static method in class net.imagej.updater.util.AvailableSites

As AvailableSites.initializeAndAddSites(FilesCollection) with an optional Logger for reporting errors.

initializeAndAddSites(FilesCollection, LogService) - Static method in class net.imagej.updater.util.AvailableSites

initializeAndAddSites(FilesCollection) - Static method in class net.imagej.updater.util.AvailableSites

Initializes the list of update sites, and adds them to the given FilesCollection.

initializeCheck() - Method in class net.imagej.minmax.AbstractMinMaxMethod

Throws an exception if this MinMaxMethod has not been initialized.

initializeColorTables(int) - Method in class net.imagej.DefaultDataset

initializeColorTables(int) - Method in interface net.imagej.ImageMetadata

Sets the number of available color tables to the given value.

initializeColorTables(int) - Method in class net.imagej.ImgPlus

initialized() - Method in class imagej.patcher.EssentialLegacyHooks

Deprecated.

initialized() - Method in class imagej.patcher.LegacyHooks

Deprecated.

First extension point to run just after ImageJ 1.x spun up.

initialized - Variable in class net.imagej.minmax.AbstractMinMaxMethod

initialized() - Method in class net.imagej.patcher.EssentialLegacyHooks

initialized() - Method in class net.imagej.patcher.LegacyHooks

First extension point to run just after ImageJ 1.x spun up.

initializeNeighborhood(long[]) - Method in interface net.imagej.plugins.commands.neigh.Neighborhood3x3Watcher

Called once each time a neighborhood is visited for the first time to allow implementer to initialize local neighborhood state.

initializeQueue() - Method in class net.imagej.updater.Checksummer

initializer() - Method in class net.imagej.plugins.commands.imglib.DuplicateImage

initializeUpdateSite(String, String, String, String) - Method in class net.imagej.ui.swing.updater.SitesDialog

initializeUpdateSite(String, String, String) - Method in class net.imagej.ui.swing.updater.UpdaterFrame

initialUpload(String, String, String) - Static method in class net.imagej.updater.FilesUploader

Deprecated.

initialUploader(UploaderService, String, String, String, Progress) - Static method in class net.imagej.updater.FilesUploader

initLast() - Method in class net.imagej.plugins.commands.animation.AnimationOptions

Initializes last value.

initName() - Method in class net.imagej.plugins.commands.imglib.DuplicateImage

initPosition() - Method in class net.imagej.plugins.commands.axispos.SetAxisPosition

initType() - Method in class net.imagej.plugins.commands.io.NewImage

initValues() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast

initValues() - Method in class net.imagej.plugins.commands.display.interactive.Threshold

injectHooks(ClassLoader) - Method in class imagej.patcher.LegacyInjector

Deprecated.

Overrides class behavior of ImageJ1 classes by injecting method hooks.

injectHooks(ClassLoader, boolean) - Method in class imagej.patcher.LegacyInjector

Deprecated.

Overrides class behavior of ImageJ1 classes by injecting method hooks.

injectHooks(ClassLoader) - Method in class net.imagej.patcher.LegacyInjector

Overrides class behavior of ImageJ1 classes by injecting method hooks.

injectHooks(ClassLoader, boolean) - Method in class net.imagej.patcher.LegacyInjector

Overrides class behavior of ImageJ1 classes by injecting method hooks.

inMin - Variable in class net.imagej.ops.convert.scale.ScaleRealTypes

inplace(Iterable<O>, UnaryInplaceOp<I, O>) - Static method in class net.imagej.ops.map.Maps

inplace(IterableInterval<O>, UnaryInplaceOp<I, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps

inplace(IterableInterval<O>, IterableInterval<I2>, BinaryInplace1Op<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps

inplace(IterableInterval<O>, RandomAccessibleInterval<I2>, BinaryInplace1Op<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps

inplace(RandomAccessibleInterval<A>, IterableInterval, BinaryInplace1Op<A, I, A>) - Static method in class net.imagej.ops.map.Maps

inplace(IterableInterval<A>, IterableInterval, BinaryInplace1Op<A, I, A>, long, long, long) - Static method in class net.imagej.ops.map.Maps

inplace(IterableInterval<A>, RandomAccessibleInterval, BinaryInplace1Op<A, I, A>, long, long, long) - Static method in class net.imagej.ops.map.Maps

inplace(RandomAccessibleInterval<A>, IterableInterval, BinaryInplace1Op<A, I, A>, long, long, long) - Static method in class net.imagej.ops.map.Maps

inplace(IterableInterval<A>, IterableInterval<A>, BinaryInplaceOp<A, A>) - Static method in class net.imagej.ops.map.Maps

inplace(IterableInterval<A>, IterableInterval<A>, BinaryInplaceOp<A, A>, long, long, long) - Static method in class net.imagej.ops.map.Maps

inplace(OpEnvironment, Class<? extends Op>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs

inplace(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs

inplace(OpEnvironment, Class<? extends Op>, A, Object...) - Static method in class net.imagej.ops.special.chain.RTs

Inplaces - Class in net.imagej.ops.special.inplace

Utility class for looking up inplace ops in a type-safe way.

InplaceUnaryTransform,O extends ComplexType<O>> - Class in net.imagej.plugins.commands.assign

Helper class for use by many plugins that apply a ComplexUnaryOperation to some input image.

InplaceUnaryTransform(ComplexUnaryOperation<O, O>, O, Dataset, Overlay) - Constructor for class net.imagej.plugins.commands.assign.InplaceUnaryTransform

All planes version

InplaceUnaryTransform(ComplexUnaryOperation<O, O>, O, Dataset, Overlay, Position) - Constructor for class net.imagej.plugins.commands.assign.InplaceUnaryTransform

Single plane versions

input - Variable in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin

inputData() - Method in class net.imagej.plugins.commands.binary.Binarize

Gets the reference input data.

inputMask() - Method in class net.imagej.plugins.commands.binary.Binarize

Gets the preexisting mask (if any).

inputs() - Method in class net.imagej.ops.OpCandidate

Gets the op's input parameters.

inputs() - Method in class net.imagej.ops.OpInfo

Gets the op's input parameters.

inputs(ModuleInfo) - Static method in class net.imagej.ops.OpUtils

Gets the given ModuleInfo's list of inputs, excluding special ones like Services and Contexts.

inputs() - Method in class net.imagej.server.mixins.Mixins.ModuleInfoMixIn

inputs() - Method in class net.imagej.server.WebCommandInfo

InputStream2OutputStream - Class in net.imagej.updater.util

Copies an InputStream into an OutputStream.

InputStream2OutputStream(InputStream, OutputStream) - Constructor for class net.imagej.updater.util.InputStream2OutputStream

insertColumn(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

insertColumn(int, String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

insertColumns(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

insertColumns(int, String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

insertRow(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

insertRow(int, String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

insertRows(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

insertRows(int, String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

INSIDE - Static variable in class net.imagej.plugins.commands.binary.Binarize

InspectImg - Class in net.imagej.plugins.commands.debug

TODO

InspectImg() - Constructor for class net.imagej.plugins.commands.debug.InspectImg

install(RSyntaxTextArea) - Method in class net.imagej.legacy.plugin.MacroLanguageSupportPlugin

install() - Method in class net.imagej.ui.swing.updater.UpdaterFrame

installed() - Method in class imagej.patcher.LegacyHooks

Deprecated.

Runs when the hooks are installed into an existing legacy environment.

installed() - Method in class net.imagej.legacy.DefaultLegacyHooks

installed() - Method in class net.imagej.patcher.LegacyHooks

Runs when the hooks are installed into an existing legacy environment.

installed() - Method in class net.imagej.updater.FilesCollection

Installer - Class in net.imagej.updater

A class that updates local files from all available update sites.

Installer(FilesCollection, Progress) - Constructor for class net.imagej.updater.Installer

installHooks(ClassLoader, LegacyHooks) - Static method in class imagej.patcher.LegacyInjector

Deprecated.

installHooks(ClassLoader, LegacyHooks) - Static method in class net.imagej.patcher.LegacyInjector

InstallOrUpdate - Class in net.imagej.updater.action

The update action.

InstallOrUpdate() - Constructor for class net.imagej.updater.action.InstallOrUpdate

installUploader(String, FilesCollection, Progress) - Method in class net.imagej.updater.DefaultUploaderService

installUploader(String, FilesCollection, Progress) - Method in interface net.imagej.updater.UploaderService

TODO.

instanceOf(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator

Int16() - Constructor for class net.imagej.ops.convert.ConvertImages.Int16

int16(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

int16(Img<ShortType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

int16(C) - Method in class net.imagej.ops.convert.ConvertNamespace

int16(ShortType, C) - Method in class net.imagej.ops.convert.ConvertNamespace

int16(T) - Method in class net.imagej.ops.convert.ConvertNamespace

int16(ShortType, T) - Method in class net.imagej.ops.convert.ConvertNamespace

int16(long) - Static method in class net.imagej.ops.convert.Types

int16(double) - Static method in class net.imagej.ops.convert.Types

int16(BigInteger) - Static method in class net.imagej.ops.convert.Types

int16(boolean) - Static method in class net.imagej.ops.convert.Types

Int32() - Constructor for class net.imagej.ops.convert.ConvertImages.Int32

int32(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

int32(Img<IntType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

int32(T) - Method in class net.imagej.ops.convert.ConvertNamespace

int32(IntType, T) - Method in class net.imagej.ops.convert.ConvertNamespace

int32(C) - Method in class net.imagej.ops.convert.ConvertNamespace

int32(IntType, C) - Method in class net.imagej.ops.convert.ConvertNamespace

int32(long) - Static method in class net.imagej.ops.convert.Types

int32(double) - Static method in class net.imagej.ops.convert.Types

int32(Number) - Static method in class net.imagej.ops.convert.Types

int32(boolean) - Static method in class net.imagej.ops.convert.Types

Int64() - Constructor for class net.imagej.ops.convert.ConvertImages.Int64

int64(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

int64(Img<LongType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

int64(C) - Method in class net.imagej.ops.convert.ConvertNamespace

int64(LongType, C) - Method in class net.imagej.ops.convert.ConvertNamespace

int64(T) - Method in class net.imagej.ops.convert.ConvertNamespace

int64(LongType, T) - Method in class net.imagej.ops.convert.ConvertNamespace

int64(long) - Static method in class net.imagej.ops.convert.Types

int64(double) - Static method in class net.imagej.ops.convert.Types

int64(BigInteger) - Static method in class net.imagej.ops.convert.Types

int64(boolean) - Static method in class net.imagej.ops.convert.Types

Int8() - Constructor for class net.imagej.ops.convert.ConvertImages.Int8

int8(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

int8(Img<ByteType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

int8(C) - Method in class net.imagej.ops.convert.ConvertNamespace

int8(ByteType, C) - Method in class net.imagej.ops.convert.ConvertNamespace

int8(T) - Method in class net.imagej.ops.convert.ConvertNamespace

int8(ByteType, T) - Method in class net.imagej.ops.convert.ConvertNamespace

int8(long) - Static method in class net.imagej.ops.convert.Types

int8(double) - Static method in class net.imagej.ops.convert.Types

int8(BigInteger) - Static method in class net.imagej.ops.convert.Types

int8(boolean) - Static method in class net.imagej.ops.convert.Types

IntArraySorter - Class in net.imagej.ops.coloc

Sorts and int[] according to a custom comparator.

IntArraySorter() - Constructor for class net.imagej.ops.coloc.IntArraySorter

IntComparator - Interface in net.imagej.ops.coloc

integer(ImgPlus<?>) - Method in class net.imagej.DefaultImgPlusService

integer(ImgPlus<?>) - Method in interface net.imagej.ImgPlusService

Given an ImgPlus of unknown type this returns a typed ImgPlus of type IntegerType.

IntegerAbs() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerAbs

IntegerAdd() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerAdd

IntegerAnd() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerAnd

IntegerComplement() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerComplement

IntegerDivide() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerDivide

IntegerEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.IntegerEqual

IntegerGreaterThan() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.IntegerGreaterThan

IntegerGreaterThanOrEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.IntegerGreaterThanOrEqual

IntegerLeftShift() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerLeftShift

IntegerLessThan() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.IntegerLessThan

IntegerLessThanOrEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.IntegerLessThanOrEqual

IntegerMax() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerMax

IntegerMin() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerMin

IntegerMultiply() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerMultiply

IntegerNegate() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerNegate

IntegerNotEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.IntegerNotEqual

IntegerOr() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerOr

IntegerRemainder() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerRemainder

IntegerRightShift() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerRightShift

IntegerSubtract() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerSubtract

IntegerToBit() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToBit

IntegerToInt16() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToInt16

IntegerToInt32() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToInt32

IntegerToInt64() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToInt64

IntegerToInt8() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToInt8

IntegerToIntTypeConverter() - Constructor for class net.imagej.server.converter.NumberToNumericTypeConverters.IntegerToIntTypeConverter

IntegerToUint12() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToUint12

IntegerToUint128() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToUint128

IntegerToUint16() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToUint16

IntegerToUint2() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToUint2

IntegerToUint32() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToUint32

IntegerToUint4() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToUint4

IntegerToUint64() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToUint64

IntegerToUint8() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToUint8

integerType() - Method in class net.imagej.ops.create.CreateNamespace

integerType(long) - Method in class net.imagej.ops.create.CreateNamespace

IntegerTypeMixIn() - Constructor for class net.imagej.server.mixins.Mixins.IntegerTypeMixIn

IntegerUnsignedRightShift() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerUnsignedRightShift

IntegerXor() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerXor

integral(RandomAccessibleInterval<RealType>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.ImageNamespace

integral(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.ImageNamespace

IntegralCursor<T> - Class in net.imagej.ops.image.integral

A cursor implementation that returns specific corner values of RectangleNeighborhoods.

IntegralCursor(RectangleNeighborhood<T>) - Constructor for class net.imagej.ops.image.integral.IntegralCursor

IntegralCursor(IntegralCursor<T>) - Constructor for class net.imagej.ops.image.integral.IntegralCursor

IntegralMean> - Class in net.imagej.ops.stats

Op to calculate the stats.mean from an integral image using a specialized Cursor implementation.

IntegralMean() - Constructor for class net.imagej.ops.stats.IntegralMean

integralMean(DoubleType, RectangleNeighborhood) - Method in class net.imagej.ops.stats.StatsNamespace

IntegralSum> - Class in net.imagej.ops.stats

Op to calculate the stats.sum from an integral image using a specialized Cursor implementation.

IntegralSum() - Constructor for class net.imagej.ops.stats.IntegralSum

integralSum(RectangleNeighborhood) - Method in class net.imagej.ops.stats.StatsNamespace

integralSum(DoubleType, RectangleNeighborhood) - Method in class net.imagej.ops.stats.StatsNamespace

IntegralVariance> - Class in net.imagej.ops.stats

Op to calculate the stats.variance from an integral image using a specialized Cursor implementation.

IntegralVariance() - Constructor for class net.imagej.ops.stats.IntegralVariance

integralVariance(DoubleType, RectangleNeighborhood) - Method in class net.imagej.ops.stats.StatsNamespace

InteractiveImageCommand - Class in net.imagej.command

An extension of InteractiveCommand which supports syncing DatasetView and Dataset inputs in addition to only Displays.

InteractiveImageCommand(String...) - Constructor for class net.imagej.command.InteractiveImageCommand

Creates a new interactive image command.

intercept(double, double, double, double) - Static method in class net.imagej.axis.DefaultLinearAxis

Returns the y intercept of the line connecting two points.

interceptCloseAllWindows() - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptCloseAllWindows() - Method in class net.imagej.patcher.LegacyHooks

Allows closing additional windows at the end of WindowManager.closeAllWindows().

interceptDragAndDropFile(File) - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptDragAndDropFile(File) - Method in class net.imagej.patcher.LegacyHooks

Optionally override opening drag-and-dropped files via legacy hooks.

interceptFileOpen(String) - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptFileOpen(String) - Method in class net.imagej.patcher.LegacyHooks

Optionally override opening resources via legacy hooks.

interceptImageWindowClose(Object) - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptImageWindowClose(Object) - Method in class net.imagej.patcher.LegacyHooks

Hook to ensure ImageWindows are fully cleaned up when they are closed.

interceptKeyPressed(KeyEvent) - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptKeyPressed(KeyEvent) - Method in class net.imagej.patcher.LegacyHooks

Intercepts keyboard events sent to ImageJ 1.x.

interceptOpen(String, int, boolean) - Method in class imagej.patcher.LegacyHooks

Deprecated.

Optionally override opening resources via legacy hooks.

interceptOpen(String, int, boolean) - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptOpen(String, int, boolean) - Method in class net.imagej.patcher.LegacyHooks

Deprecated.
this will be removed before ij1-patcher 1.0.0

interceptOpenImage(String, int) - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptOpenImage(String, int) - Method in class net.imagej.patcher.LegacyHooks

Optionally override opening images via legacy hooks.

interceptOpenRecent(String) - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptOpenRecent(String) - Method in class net.imagej.patcher.LegacyHooks

Optionally override opening recent images via legacy hooks.

interceptRunPlugIn(String, String) - Method in class imagej.patcher.EssentialLegacyHooks

Deprecated.

Intercepts LegacyInitializer's Context creation.

interceptRunPlugIn(String, String) - Method in class imagej.patcher.LegacyHooks

Deprecated.

Intercepts the call to IJ.runPlugIn(String, String).

interceptRunPlugIn(String, String) - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptRunPlugIn(String, String) - Method in class net.imagej.patcher.EssentialLegacyHooks

Intercepts LegacyInitializer's Context creation.

interceptRunPlugIn(String, String) - Method in class net.imagej.patcher.LegacyHooks

Intercepts the call to IJ.runPlugIn(String, String).

Interface(int) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer.Interface

Intermodes() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Intermodes

intermodes(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

intermodes(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

intermodes(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

intermodes(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

intermodes(IterableInterval, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

intermodes(IterableInterval, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

interpolateView(I, InterpolatorFactory<T, I>) - Method in class net.imagej.ops.transform.TransformNamespace

Returns a RealRandomAccessible using interpolation

intersect(BezierPath, BezierPath) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions

IntervalHyperSliceView<T> - Class in net.imagej.ops.transform.hyperSliceView

Wraps the Views.hyperSlice(RandomAccessibleInterval, int, long) method.

IntervalHyperSliceView() - Constructor for class net.imagej.ops.transform.hyperSliceView.IntervalHyperSliceView

IntervalInvertAxisView<T> - Class in net.imagej.ops.transform.invertAxisView

Wraps the Views.invertAxis(RandomAccessible, int) method while preserving interval bounds.

IntervalInvertAxisView() - Constructor for class net.imagej.ops.transform.invertAxisView.IntervalInvertAxisView

IntervalPermuteView<T> - Class in net.imagej.ops.transform.permuteView

Wraps the Views.permute(RandomAccessible, int, int) method while preserving interval bounds.

IntervalPermuteView() - Constructor for class net.imagej.ops.transform.permuteView.IntervalPermuteView

IntervalRotateView<T> - Class in net.imagej.ops.transform.rotateView

Wraps the Views.rotate(RandomAccessibleInterval, int, int) method.

IntervalRotateView() - Constructor for class net.imagej.ops.transform.rotateView.IntervalRotateView

IntervalSubsampleView<T> - Class in net.imagej.ops.transform.subsampleView

Wraps the Views.subsample(RandomAccessible, long) method while preserving interval bounds.

IntervalSubsampleView() - Constructor for class net.imagej.ops.transform.subsampleView.IntervalSubsampleView

IntervalTranslateView<T> - Class in net.imagej.ops.transform.translateView

Wraps the Views.translate(RandomAccessible, long[]) method while preserving interval bounds.

IntervalTranslateView() - Constructor for class net.imagej.ops.transform.translateView.IntervalTranslateView

intervalView(RandomAccessible<T>, Interval) - Method in class net.imagej.ops.transform.TransformNamespace

Define an interval on a RandomAccessible.

intervalView(RandomAccessible<T>, long[], long...) - Method in class net.imagej.ops.transform.TransformNamespace

Define an interval on a RandomAccessible.

IntervalViewMinMax<T> - Class in net.imagej.ops.transform.intervalView

Wraps the Views.interval(RandomAccessible, long[], long[]) method.

IntervalViewMinMax() - Constructor for class net.imagej.ops.transform.intervalView.IntervalViewMinMax

IntTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.IntTableToResultsTable

invalidate() - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure

invalidNumber - Variable in class imagej.patcher.HeadlessGenericDialog

Deprecated.

invalidNumber() - Method in class imagej.patcher.HeadlessGenericDialog

Deprecated.

invalidNumber - Variable in class net.imagej.patcher.HeadlessGenericDialog

invalidNumber() - Method in class net.imagej.patcher.HeadlessGenericDialog

InverseRodbardAxis - Class in net.imagej.axis

InverseRodbardAxis is a CalibratedAxis that scales raw values by the equation y = a*((x-b)/(c-x))^(1/d).

InverseRodbardAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.InverseRodbardAxis

invert(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.image.ImageNamespace

Executes the "invert" operation on the given arguments.

invert(IterableInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.image.ImageNamespace

Executes the "invert" operation on the given arguments, given a RealType minimum.

invert(IterableInterval<T>, IterableInterval<T>, T, T) - Method in class net.imagej.ops.image.ImageNamespace

Executes the "invert" operation on the given arguments, given a RealType minimum.

invert(O, I, double, double) - Method in class net.imagej.ops.math.MathNamespace

Invert() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Invert

invertAxisView(RandomAccessible<T>, int) - Method in class net.imagej.ops.transform.TransformNamespace

Invert the d-axis.

invertAxisView(RandomAccessibleInterval<T>, int) - Method in class net.imagej.ops.transform.TransformNamespace

Invert the d-axis while preserving interval bounds.

InvertDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign

Fills an output Dataset by applying an inversion to an input Dataset's data values.

InvertDataValues() - Constructor for class net.imagej.plugins.commands.assign.InvertDataValues

InvertII<T extends RealType<T>> - Class in net.imagej.ops.image.invert

InvertII() - Constructor for class net.imagej.ops.image.invert.InvertII

InvertIIInteger<T extends IntegerType<T>> - Class in net.imagej.ops.image.invert

InvertIIInteger() - Constructor for class net.imagej.ops.image.invert.InvertIIInteger

invoke(String) - Method in class net.imagej.omero.ScriptRunner

Invokes the given ImageJ module identifier as an OMERO script.

invoke(ModuleInfo) - Method in class net.imagej.omero.ScriptRunner

Invokes the given ImageJ module as an OMERO script.

invokeOnEDT(Runnable) - Static method in class net.imagej.ui.swing.updater.SwingTools

IrregularPolylineRoiWrapper - Class in net.imagej.legacy.convert.roi.polyline

Wraps a PolygonRoi of type Roi.POLYLINE or Roi.FREELINE with a non zero width as a RealMaskRealInterval.

IrregularPolylineRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper

Creates a RealMaskRealInterval which wraps the given Roi.

IrregularPolylineRoiWrapperToMaskData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.IrregularPolylineRoiWrapperToMaskData

is(FileObject.Action) - Method in class net.imagej.updater.FilesCollection

is(FileObject.Status) - Method in class net.imagej.updater.FilesCollection

isActive() - Method in class net.imagej.animation.Animation

Returns true if the animation is currently running.

isActive() - Method in class net.imagej.legacy.LegacyService

Gets whether this LegacyService is fully operational, linked to the ImageJ 1.x singleton instance.

isActive() - Static method in class net.imagej.patcher.PerformanceProfiler

Reports whether profiling is in progress

isActive() - Method in class net.imagej.updater.UpdateSite

isActiveInAppFrame() - Method in class net.imagej.plugins.tools.AcceleratorHandler

isActiveInAppFrame() - Method in class net.imagej.plugins.tools.AxisPositionHandler

isActiveInAppFrame() - Method in class net.imagej.plugins.tools.ZoomHandler

isAddToRoiMgr() - Method in class net.imagej.options.OptionsPointTool

isAllPlanes() - Method in class net.imagej.plugins.commands.assign.AbsDataValues

isAllPlanes() - Method in class net.imagej.plugins.commands.assign.AddNoiseToDataValues

isAllPlanes() - Method in class net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues

isAllPlanes() - Method in class net.imagej.plugins.commands.assign.EquationDataValues

isAllPlanes() - Method in class net.imagej.plugins.commands.assign.ExpDataValues

isAllPlanes() - Method in class net.imagej.plugins.commands.assign.InvertDataValues

isAllPlanes() - Method in class net.imagej.plugins.commands.assign.LogDataValues

isAllPlanes() - Method in class net.imagej.plugins.commands.assign.ReciprocalDataValues

isAllPlanes() - Method in class net.imagej.plugins.commands.assign.SquareDataValues

isAllPlanes() - Method in class net.imagej.plugins.commands.assign.SquareRootDataValues

isAlwaysActive() - Method in class net.imagej.plugins.tools.AcceleratorHandler

isAlwaysActive() - Method in class net.imagej.plugins.tools.AxisPositionHandler

isAlwaysActive() - Method in class net.imagej.plugins.tools.ContextMenuHandler

isAlwaysActive() - Method in class net.imagej.plugins.tools.FocusHandler

isAlwaysActive() - Method in class net.imagej.plugins.tools.KonamiHandler

isAlwaysActive() - Method in class net.imagej.plugins.tools.PanActivator

isAlwaysActive() - Method in class net.imagej.plugins.tools.PixelProbe

isAlwaysActive() - Method in class net.imagej.plugins.tools.ZoomHandler

isAntialiasedToolIcons() - Method in class net.imagej.options.OptionsAppearance

isApproved() - Method in class net.imagej.updater.URLChange

isArrowDoubleHeaded() - Method in class net.imagej.options.OptionsArrowTool

isArrowOutline() - Method in class net.imagej.options.OptionsArrowTool

isAutoClose() - Method in class net.imagej.options.OptionsProfilePlot

isAutoMeasure() - Method in class net.imagej.options.OptionsPointTool

isAutoNextSlice() - Method in class net.imagej.options.OptionsPointTool

isBackAndForth() - Method in class net.imagej.animation.Animation

isBackAndForth() - Method in class net.imagej.plugins.commands.animation.AnimationOptions

isBatchMode() - Method in class net.imagej.legacy.LegacyCommandline

isBatchMode() - Method in class net.imagej.ui.swing.updater.SwingUserInterface

isBatchMode() - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface

isBatchMode() - Method in class net.imagej.updater.util.UpdaterUserInterface

isBatchMode() - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface

isBlackCanvas() - Method in class net.imagej.options.OptionsAppearance

isBoolType(RandomAccessible<?>) - Static method in class net.imagej.roi.MaskConversionUtil

isBoolType(RealRandomAccessible<?>) - Static method in class net.imagej.roi.MaskConversionUtil

isBoolType(Type) - Static method in class net.imagej.roi.MaskConversionUtil

isBounded() - Method in interface net.imagej.types.DataType

Returns true if DataType is fully bounded (bounded below and bounded above).

isBounded() - Method in class net.imagej.types.DataType128BitSignedComplexFloat

isBounded() - Method in class net.imagej.types.DataType12BitUnsignedInteger

isBounded() - Method in class net.imagej.types.DataType16BitSignedInteger

isBounded() - Method in class net.imagej.types.DataType16BitUnsignedInteger

isBounded() - Method in class net.imagej.types.DataType1BitUnsignedInteger

isBounded() - Method in class net.imagej.types.DataType32BitSignedFloat

isBounded() - Method in class net.imagej.types.DataType32BitSignedInteger

isBounded() - Method in class net.imagej.types.DataType32BitUnsignedInteger

isBounded() - Method in class net.imagej.types.DataType64BitSignedComplexFloat

isBounded() - Method in class net.imagej.types.DataType64BitSignedFloat

isBounded() - Method in class net.imagej.types.DataType64BitSignedInteger

isBounded() - Method in class net.imagej.types.DataType8BitSignedInteger

isBounded() - Method in class net.imagej.types.DataType8BitUnsignedInteger

isBounded() - Method in class net.imagej.types.DataTypeBoolean

isBounded() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat

isBounded() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat

isBounded() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger

isCanceled() - Method in class net.imagej.ops.filter.tubeness.DefaultTubeness

isCanceled() - Method in class net.imagej.ops.thread.chunker.AbstractChunker

isCanceled() - Method in class net.imagej.ops.thread.chunker.ChunkerInterleaved

isCanceled() - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin

isCanceled() - Method in class net.imagej.plugins.commands.debug.PointSetDemo

isCandidate(String) - Method in class net.imagej.updater.Checksummer

isCapitalized(String) - Static method in class net.imagej.util.MediaWikiClient

isCellEditable(int, int) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel

isCentered() - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify

isClearAll() - Method in class net.imagej.app.Preferences

isClosed() - Method in class net.imagej.tensorflow.CachedModelBundle

isCompatible(Data) - Method in interface net.imagej.display.DataView

Gets whether this view is compatible with the given Data.

isCompatible(Data) - Method in class net.imagej.display.DefaultDatasetView

isCompatible(Data) - Method in class net.imagej.display.DefaultOverlayView

isCompatible(UserInterface) - Method in class net.imagej.legacy.display.ImagePlusDisplayViewer

isCompatible(UserInterface) - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer

isCompatible(int) - Method in interface net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation

isCompatible(int) - Method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation2D

isCompatible(int) - Method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation3D

isCompatible(UserInterface) - Method in class net.imagej.ui.swing.mdi.viewer.SwingMdiImageDisplayViewer

isCompatible(UserInterface) - Method in class net.imagej.ui.swing.sdi.viewer.SwingSdiImageDisplayViewer

isComplex() - Method in interface net.imagej.types.DataType

Returns true if this DataType is a complex number (imaginary component is changeable).

isComplex() - Method in class net.imagej.types.DataType128BitSignedComplexFloat

isComplex() - Method in class net.imagej.types.DataType12BitUnsignedInteger

isComplex() - Method in class net.imagej.types.DataType16BitSignedInteger

isComplex() - Method in class net.imagej.types.DataType16BitUnsignedInteger

isComplex() - Method in class net.imagej.types.DataType1BitUnsignedInteger

isComplex() - Method in class net.imagej.types.DataType32BitSignedFloat

isComplex() - Method in class net.imagej.types.DataType32BitSignedInteger

isComplex() - Method in class net.imagej.types.DataType32BitUnsignedInteger

isComplex() - Method in class net.imagej.types.DataType64BitSignedComplexFloat

isComplex() - Method in class net.imagej.types.DataType64BitSignedFloat

isComplex() - Method in class net.imagej.types.DataType64BitSignedInteger

isComplex() - Method in class net.imagej.types.DataType8BitSignedInteger

isComplex() - Method in class net.imagej.types.DataType8BitUnsignedInteger

isComplex() - Method in class net.imagej.types.DataTypeBoolean

isComplex() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat

isComplex() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat

isComplex() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger

isConstructing() - Method in class net.imagej.ui.swing.overlay.IJBezierTool

isConstructing() - Method in class net.imagej.ui.swing.overlay.IJCreationTool

isConstructing() - Method in class net.imagej.ui.swing.overlay.IJDelegationSelectionTool

isConstructing() - Method in interface net.imagej.ui.swing.overlay.JHotDrawTool

isCopyColumnHeaders() - Method in class net.imagej.options.OptionsInputOutput

isCopyRowNumbers() - Method in class net.imagej.options.OptionsInputOutput

isCrashed() - Method in class net.imagej.tensorflow.TensorFlowLibraryStatus

isCritical() - Method in class net.imagej.updater.Conflicts.Conflict

isDebian() - Static method in class net.imagej.ui.swing.updater.ImageJUpdater

This returns true if this seems to be the Debian packaged version of ImageJ, or false otherwise.

isDebugMode() - Method in class net.imagej.options.OptionsMisc

isDefaultBehavior() - Method in class net.imagej.plugins.commands.imglib.DuplicateImage

Returns true if current behavior is default.

isDeveloper() - Static method in class net.imagej.updater.UpToDate

isDirty() - Method in interface net.imagej.Dataset

TODO

isDirty() - Method in class net.imagej.DefaultDataset

isDisplayFractionalScales() - Method in class net.imagej.options.OptionsAppearance

isDisplaying(Object) - Method in class net.imagej.display.DefaultImageDisplay

isDisposing() - Method in class net.imagej.legacy.IJ1Helper

Whether we are in the process of forcibly shutting down ImageJ1.

isDoubleOutput() - Method in class net.imagej.plugins.commands.calculator.ImageCalculator

Returns true if image calculation will return a double backed Img as output.

isDrawGridLines() - Method in class net.imagej.options.OptionsProfilePlot

isDropBoxURL(URL) - Static method in class net.imagej.updater.util.DropboxURLMapper

isEmpty() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

isEmpty() - Method in class net.imagej.legacy.convert.ResultsTableWrapper

isEmpty() - Method in class net.imagej.legacy.convert.TableListWrapper

isEmpty() - Method in class net.imagej.omero.LazyTableList

isEncrypted() - Method in class net.imagej.omero.OMEROLocation

isError() - Method in class net.imagej.updater.Conflicts.Conflict

isExitWhenQuitting() - Method in class net.imagej.options.OptionsMisc

isFailed() - Method in class net.imagej.tensorflow.TensorFlowLibraryStatus

isFloat() - Method in interface net.imagej.types.DataType

Returns true if this DataType represents a floating point number.

isFloat() - Method in class net.imagej.types.DataType128BitSignedComplexFloat

isFloat() - Method in class net.imagej.types.DataType12BitUnsignedInteger

isFloat() - Method in class net.imagej.types.DataType16BitSignedInteger

isFloat() - Method in class net.imagej.types.DataType16BitUnsignedInteger

isFloat() - Method in class net.imagej.types.DataType1BitUnsignedInteger

isFloat() - Method in class net.imagej.types.DataType32BitSignedFloat

isFloat() - Method in class net.imagej.types.DataType32BitSignedInteger

isFloat() - Method in class net.imagej.types.DataType32BitUnsignedInteger

isFloat() - Method in class net.imagej.types.DataType64BitSignedComplexFloat

isFloat() - Method in class net.imagej.types.DataType64BitSignedFloat

isFloat() - Method in class net.imagej.types.DataType64BitSignedInteger

isFloat() - Method in class net.imagej.types.DataType8BitSignedInteger

isFloat() - Method in class net.imagej.types.DataType8BitUnsignedInteger

isFloat() - Method in class net.imagej.types.DataTypeBoolean

isFloat() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat

isFloat() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat

isFloat() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger

isFontSmooth() - Method in class net.imagej.options.OptionsFont

isFormat(String, SCIFIOConfig) - Method in class net.imagej.omero.OMEROFormat.Checker

isForPlatform(String) - Method in class net.imagej.updater.FileObject

isForThisPlatform(FilesCollection) - Method in class net.imagej.updater.FileObject

isFullZoomImages() - Method in class net.imagej.options.OptionsAppearance

isGenerateDebugInfo() - Method in class net.imagej.options.OptionsCompiler

isGrayColorTable(ColorTable) - Static method in class net.imagej.display.ColorTables

Tests whether a ColorTable consists of gray values.

isHideProcessStackDialog() - Method in class net.imagej.options.OptionsMisc

isImageJ1Initialized(ClassLoader) - Static method in class net.imagej.patcher.LegacyEnvironment

Determines whether there is already an ImageJ 1.x instance.

isImageJ1VersionAtLeast(CodeHacker, String) - Static method in class net.imagej.patcher.LegacyInjector

isImagePlus(Object) - Method in class net.imagej.legacy.IJ1Helper

Returns true if the object is an instance of ImagePlus.

isImagePlus(Class<?>) - Method in class net.imagej.legacy.IJ1Helper

Returns true if the class is assignable to ImagePlus.

isInImage(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas

isInImage(IntCoords) - Method in interface net.imagej.display.ImageCanvas

Tests whether a given point in the panel falls within the boundaries of the display space.

isInitialized() - Method in class net.imagej.legacy.LegacyService

Returns true if this LegacyService has been initialized already and false if not.

isInstallable() - Method in class net.imagej.updater.FileObject

isInteger() - Method in interface net.imagej.Dataset

TODO

isInteger() - Method in class net.imagej.DefaultDataset

isInterpLineProf() - Method in class net.imagej.options.OptionsProfilePlot

isInterpZoomedImages() - Method in class net.imagej.options.OptionsAppearance

isInvertModeLegacy() - Method in class net.imagej.options.OptionsCompatibility

isInvertModeModern() - Method in class net.imagej.options.OptionsCompatibility

isLabelPoints() - Method in class net.imagej.options.OptionsPointTool

isLastModified(long) - Method in class net.imagej.updater.UpdateSite

isLauncher(String) - Method in class net.imagej.updater.util.UpdaterUtil

isLegacyMode() - Method in class imagej.patcher.LegacyHooks

Deprecated.

Determines whether the image windows should be displayed or not.

isLegacyMode() - Method in class net.imagej.legacy.DefaultLegacyHooks

isLegacyMode() - Method in class net.imagej.legacy.LegacyService

States whether we're running in legacy ImageJ 1.x mode.

isLegacyMode() - Method in class net.imagej.patcher.LegacyHooks

Determines whether the image windows should be displayed or not.

isListValues() - Method in class net.imagej.options.OptionsProfilePlot

isLoaded() - Method in class net.imagej.tensorflow.TensorFlowLibraryStatus

isLocal(URL) - Static method in class net.imagej.updater.Diff

Determine whether a URL refers to a local file.

isLocallyModified() - Method in class net.imagej.updater.FileObject

isLocalOnly() - Method in class net.imagej.updater.FileObject

isLossy() - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.box.BoxToRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidToOvalRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.point.PointMaskToPointRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionToPointRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.point.WritablePointMaskToPointRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.point.WritableRealPointCollectionToPointRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DToPolygonRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.polygon2d.WritablePolygon2DToPolygonRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineToPolylineRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.polyline.WritablePolylineToPolylineRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter

isLUT(File) - Method in class net.imagej.lut.DefaultLUTService

isLUT(File) - Method in interface net.imagej.lut.LUTService

Gets whether the given file can be parsed as a color table by LUTService.loadLUT(File).

isMacintosh() - Method in class net.imagej.legacy.IJ1Helper

isMacOSX() - Method in class net.imagej.updater.util.UpdaterUtil

isMacro() - Method in class net.imagej.legacy.IJ1Helper

Determines whether we're running inside a macro right now.

isMetaDataOnly() - Method in class net.imagej.event.DatasetUpdatedEvent

isMouseoverEnabled() - Method in class net.imagej.legacy.search.SearchOptions

isMoveIsolatedPlugins() - Method in class net.imagej.options.OptionsMisc

isMultipleBuffers() - Method in class net.imagej.options.OptionsMemoryAndThreads

Returns true if ImageJ will maintain multiple undo buffers.

isNamed() - Method in class net.imagej.ops.OpInfo

Gets whether the op has a name.

isNamespace(String) - Method in class net.imagej.ops.OpInfo

Gets whether the op belongs to the given namespace.

isNewerThan(long) - Method in class net.imagej.updater.FileObject

isNewWindow() - Method in class net.imagej.plugins.commands.calculator.ImageCalculator

Returns true if image calculation with create a new image window.

isNoAction() - Method in class net.imagej.updater.FilesCollection

isNoImageBorder() - Method in class net.imagej.options.OptionsAppearance

isNoSaveXValues() - Method in class net.imagej.options.OptionsProfilePlot

isObsolete() - Method in class net.imagej.updater.FileObject

IsoData() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.IsoData

isoData(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

isoData(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

isoData(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

isoData(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

isoData(IterableInterval, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

isoData(IterableInterval, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

isOfficial() - Method in class net.imagej.updater.UpdateSite

Gets whether the site is one of those listed on the canonical list of update sites.

isOpenAs32bitFloat() - Method in class net.imagej.options.OptionsDicom

isOval() - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify

isPlanar() - Method in class net.imagej.command.AbstractPlanarCommand

isPlanar() - Method in interface net.imagej.command.PlanarCommand

isPreviewActive() - Method in class imagej.patcher.HeadlessGenericDialog

Deprecated.

isPreviewActive() - Method in class net.imagej.patcher.HeadlessGenericDialog

isProcessingEvents() - Method in class net.imagej.legacy.LegacyService

This is not part of the public API.

isProtectedLocation(File) - Static method in class net.imagej.updater.util.UpdaterUtil

Determines whether the ImageJ root directory is in an area protected by the OS.

isRecommended() - Method in class net.imagej.updater.URLChange

isRequireCommandKey() - Method in class net.imagej.options.OptionsMisc

isRequired() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn

isResolved - Variable in class net.imagej.server.WebCommandModuleItem

isRGBMerged() - Method in interface net.imagej.Dataset

For use in legacy layer only, this flag allows the various legacy layer image translators to support color images correctly.

isRGBMerged() - Method in class net.imagej.DefaultDataset

isRMIEnabled() - Method in class net.imagej.legacy.IJ1Helper

Determines whether Edit>Options>Misc...>Run single instance listener is set.

isRotateXZ() - Method in class net.imagej.options.OptionsDicom

isRotateYZ() - Method in class net.imagej.options.OptionsDicom

isRunGcOnClick() - Method in class net.imagej.options.OptionsMemoryAndThreads

Returns true if ImageJ will run the garbage collector when user clicks on the status area.

isRunSingleInstanceListener() - Method in class net.imagej.options.OptionsMisc

isSaveColumnHeaders() - Method in class net.imagej.options.OptionsInputOutput

isSaveOrderIntel() - Method in class net.imagej.options.OptionsInputOutput

isSaveRowNumbers() - Method in class net.imagej.options.OptionsInputOutput

isScaleWhenConverting() - Method in class net.imagej.options.OptionsConversions

isSciJavaIO() - Method in class net.imagej.legacy.ImageJ2Options

isSearchBarEnabled() - Method in class net.imagej.legacy.search.SearchOptions

isSearchBarFull() - Method in class net.imagej.legacy.search.SearchOptions

isSearchPanelClosedByDefaultAction() - Method in class net.imagej.legacy.search.SearchOptions

isSearchPanelEmbedded() - Method in class net.imagej.legacy.search.SearchOptions

isSelected() - Method in class net.imagej.display.AbstractDataView

isSelected() - Method in interface net.imagej.display.DataView

isSelected() - Method in class net.imagej.display.event.DataViewSelectionEvent

isSelected() - Method in class net.imagej.display.OverlayInfo

isShortcutOverridden() - Method in class net.imagej.legacy.search.SearchOptions

isSigned() - Method in interface net.imagej.Dataset

TODO

isSigned() - Method in class net.imagej.DefaultDataset

isSigned() - Method in interface net.imagej.types.DataType

Returns true if this DataType represents a signed number.

isSigned() - Method in class net.imagej.types.DataType128BitSignedComplexFloat

isSigned() - Method in class net.imagej.types.DataType12BitUnsignedInteger

isSigned() - Method in class net.imagej.types.DataType16BitSignedInteger

isSigned() - Method in class net.imagej.types.DataType16BitUnsignedInteger

isSigned() - Method in class net.imagej.types.DataType1BitUnsignedInteger

isSigned() - Method in class net.imagej.types.DataType32BitSignedFloat

isSigned() - Method in class net.imagej.types.DataType32BitSignedInteger

isSigned() - Method in class net.imagej.types.DataType32BitUnsignedInteger

isSigned() - Method in class net.imagej.types.DataType64BitSignedComplexFloat

isSigned() - Method in class net.imagej.types.DataType64BitSignedFloat

isSigned() - Method in class net.imagej.types.DataType64BitSignedInteger

isSigned() - Method in class net.imagej.types.DataType8BitSignedInteger

isSigned() - Method in class net.imagej.types.DataType8BitUnsignedInteger

isSigned() - Method in class net.imagej.types.DataTypeBoolean

isSigned() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat

isSigned() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat

isSigned() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger

isSpatial() - Method in interface net.imagej.axis.AxisType

isSpatial() - Method in class net.imagej.axis.DefaultAxisType

isSyncEnabled() - Method in class net.imagej.legacy.ImageJ2Options

Gets whether to synchronize ImageJ 1.x and ImageJ2 data structures.

isSyncEnabled() - Method in class net.imagej.legacy.LegacyService

States whether ImageJ1 and ImageJ2 data structures should be kept in sync.

isTheUpdaterUpdateable(FilesCollection) - Static method in class net.imagej.updater.Installer

isTheUpdaterUpdateable(FilesCollection, CommandService) - Static method in class net.imagej.updater.Installer

isTrue(long[]) - Method in class net.imagej.plugins.commands.assign.noisereduce.WithinRadiusOfPointSetOriginCondition

isUninstallable() - Method in class net.imagej.updater.FileObject

isUpdateable() - Method in class net.imagej.updater.FileObject

isUpdateable(boolean) - Method in class net.imagej.updater.FileObject

isUpdateablePlatform(FilesCollection) - Method in class net.imagej.updater.FileObject

isUpdateablePlatform(String) - Method in class net.imagej.updater.util.UpdaterUtil

isUpdateDefaults() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties

isUpdateSite(String) - Method in class net.imagej.updater.FilesCollection

isUploadable(FilesCollection) - Method in class net.imagej.updater.FileObject

Deprecated.

isUploadable(FilesCollection, boolean) - Method in class net.imagej.updater.FileObject

Tells whether this file can be uploaded to its update site Note: this does not check whether the file is locally modified.

isUploadable() - Method in class net.imagej.updater.UpdateSite

isUseInvertingLUT() - Method in class net.imagej.options.OptionsAppearance

isUseJFileChooser() - Method in class net.imagej.options.OptionsInputOutput

isUsePtrCursor() - Method in class net.imagej.options.OptionsMisc

isUseSystemProxy() - Method in class net.imagej.options.OptionsProxy

isValid(FilesCollection, FileObject) - Method in class net.imagej.updater.action.InstallOrUpdate

isValid(FilesCollection, FileObject) - Method in class net.imagej.updater.action.KeepAsIs

isValid(FilesCollection, FileObject) - Method in class net.imagej.updater.action.Remove

Determines whether we can remove (or unshadow) files from a particular update site.

isValid(FilesCollection, FileObject) - Method in class net.imagej.updater.action.Uninstall

isValid(FilesCollection, FileObject) - Method in class net.imagej.updater.action.Upload

Determines whether a particular set of files can be uploaded to this update site.

isValid(FileObject.Action) - Method in enum net.imagej.updater.FileObject.Status

isValid(FilesCollection, FileObject) - Method in interface net.imagej.updater.GroupAction

isValidSourcePlane(long) - Method in interface net.imagej.plugins.commands.restructure.ColorTableRemapper.RemapAlgorithm

isVertProfile() - Method in class net.imagej.options.OptionsProfilePlot

isVisible(DataView) - Method in class net.imagej.display.DefaultImageDisplay

isVisible(DataView) - Method in interface net.imagej.display.ImageDisplay

Tests whether the given view should currently be visible in this display.

isVisible() - Method in class net.imagej.legacy.IJ1Helper

isVisible() - Method in class net.imagej.legacy.ui.LegacyUI

isWeightedRgbConversions() - Method in class net.imagej.options.OptionsConversions

isWindowClosed(Frame) - Method in class net.imagej.legacy.IJ1Helper

isXY() - Method in interface net.imagej.axis.AxisType

isXY() - Method in class net.imagej.axis.DefaultAxisType

isYFixedScale() - Method in class net.imagej.options.OptionsProfilePlot

italic - Variable in class net.imagej.ui.swing.updater.ConflictDialog

italic - Variable in class net.imagej.ui.swing.updater.DiffView

italic(String) - Method in class net.imagej.ui.swing.updater.FileDetails

item - Variable in class net.imagej.updater.util.StderrProgress

itemCount - Variable in class net.imagej.updater.util.Downloader

itemDone(Object) - Method in class net.imagej.ui.swing.updater.ProgressDialog

itemDone(Object) - Method in class net.imagej.updater.FilesUploader.VerifyTimestamp

itemDone(Object) - Method in class net.imagej.updater.util.AbstractProgressable

itemDone(Object) - Method in interface net.imagej.updater.util.Progress

itemDone(Object) - Method in class net.imagej.updater.util.StderrProgress

itemLatestUpdate - Variable in class net.imagej.ui.swing.updater.ProgressDialog

itemStateChanged(ItemEvent) - Method in class net.imagej.ui.swing.overlay.SwingOverlayManager

itemTotal - Variable in class net.imagej.updater.util.Downloader

itemUpdatesTooFast() - Method in class net.imagej.ui.swing.updater.ProgressDialog

IterableCentralMoment00,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments

Op to calculate the imageMoments.centralMoment00 directly.

IterableCentralMoment00() - Constructor for class net.imagej.ops.imagemoments.centralmoments.IterableCentralMoment00

IterableCentralMoment11,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments

Op to calculate the imageMoments.centralMoment11 directly.

IterableCentralMoment11() - Constructor for class net.imagej.ops.imagemoments.centralmoments.IterableCentralMoment11

IterableGeometricMean,O extends RealType<O>> - Class in net.imagej.ops.stats

Op to calculate the stats.geometricMean directly.

IterableGeometricMean() - Constructor for class net.imagej.ops.stats.IterableGeometricMean

IterableHarmonicMean,O extends RealType<O>> - Class in net.imagej.ops.stats

Op to calculate the stats.harmonicMean directly.

IterableHarmonicMean() - Constructor for class net.imagej.ops.stats.IterableHarmonicMean

iterableInterval(IterableInterval<T>) - Method in class net.imagej.ops.copy.CopyNamespace

iterableInterval(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.copy.CopyNamespace

IterableMax<T extends RealType<T>> - Class in net.imagej.ops.stats

Op to calculate the stats.max.

IterableMax() - Constructor for class net.imagej.ops.stats.IterableMax

IterableMean,O extends RealType<O>> - Class in net.imagej.ops.stats

Op to calculate the stats.mean directly.

IterableMean() - Constructor for class net.imagej.ops.stats.IterableMean

IterableMin<T extends RealType<T>> - Class in net.imagej.ops.stats

Op to calculate the stats.min.

IterableMin() - Constructor for class net.imagej.ops.stats.IterableMin

IterableStandardDeviation,O extends RealType<O>> - Class in net.imagej.ops.stats

Op to calculate the stats.stdDev directly.

IterableStandardDeviation() - Constructor for class net.imagej.ops.stats.IterableStandardDeviation

IterableVariance,O extends RealType<O>> - Class in net.imagej.ops.stats

Op to calculate the stats.variance using the online algorithm from Knuth and Welford.

IterableVariance() - Constructor for class net.imagej.ops.stats.IterableVariance

iterate(Enumeration<T>) - Static method in class net.imagej.updater.util.UpdaterUtil

iterationOrder() - Method in class net.imagej.DefaultDataset

iterationOrder() - Method in class net.imagej.ImgPlus

iterationOrder() - Method in class net.imagej.ops.slice.SlicesII

iterationOrder() - Method in class net.imagej.table.ResultsImg

iterator() - Method in class net.imagej.DefaultDataset

iterator() - Method in class net.imagej.ImgPlus

iterator() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

iterator() - Method in class net.imagej.legacy.convert.ResultsTableWrapper

iterator() - Method in class net.imagej.legacy.convert.TableListWrapper

iterator() - Method in interface net.imagej.mesh.Triangles

iterator() - Method in interface net.imagej.mesh.Vertices

iterator() - Method in class net.imagej.omero.LazyTableList

iterator() - Method in class net.imagej.ops.slice.SlicesII

iterator() - Method in class net.imagej.table.ResultsImg

iterator() - Method in class net.imagej.updater.FilesCollection

iterator() - Method in class net.imagej.updater.util.ByteCodeAnalyzer

J

JarLauncher - Class in net.imagej.launcher

A convenience class to launch main classes defined in .jar files' manifests.

JarLauncher() - Constructor for class net.imagej.launcher.JarLauncher

JavaAgent - Class in net.imagej.patcher

A Java agent to help with legacy issues.

JavaAgent() - Constructor for class net.imagej.patcher.JavaAgent

javap(File, String) - Method in class net.imagej.updater.Diff

Run javap on a class file.

javap(File) - Method in class net.imagej.updater.Diff

Run javap on a class file.

JHotDrawAdapter<F extends Figure> - Interface in net.imagej.ui.swing.overlay

Interface for JHotDraw-based adapters, which maintain a bidirectional link between an ImageJ Overlay and a JHotDraw Figure.

JHotDrawImageCanvas - Class in net.imagej.ui.swing.viewer.image

A renderer of an ImageCanvas, which uses JHotDraw's DefaultDrawingView component to do most of the work.

JHotDrawImageCanvas(SwingImageDisplayViewer) - Constructor for class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas

JHotDrawService - Class in net.imagej.ui.swing.overlay

The JHotDraw service manages the bidirectional linkage between ImageJ Overlays and JHotDraw Figures.

JHotDrawService() - Constructor for class net.imagej.ui.swing.overlay.JHotDrawService

JHotDrawTool - Interface in net.imagej.ui.swing.overlay

A JHotDraw Tool (not a Tool) with some extra needed API methods.

join(C, A, UnaryComputerOp<A, B>, UnaryComputerOp<B, C>, UnaryOutputFactory<A, B>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "join" operation on the given arguments.

join(C, UnaryInplaceOp<A, B>, UnaryInplaceOp<B, C>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "join" operation on the given arguments.

join(A, A, List<? extends UnaryComputerOp<A, A>>, UnaryOutputFactory<A, A>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "join" operation on the given arguments.

join(O, List<? extends UnaryInplaceOp<I, O>>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "join" operation on the given arguments.

join(B, AO, UnaryInplaceOp<AI, AO>, UnaryComputerOp<AO, B>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "join" operation on the given arguments.

join(BO, A, UnaryComputerOp<A, BO>, UnaryInplaceOp<BI, BO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "join" operation on the given arguments.

join() - Method in class net.imagej.server.ImageJServer

join(String, Iterable<T>) - Static method in class net.imagej.updater.util.UpdaterUtil

Join2Computers<A,B,C> - Interface in net.imagej.ops.join

A join operation which joins two UnaryComputerOps.

Join2Inplaces<A,B extends A,C extends B> - Interface in net.imagej.ops.join

A join operation which joins two UnaryInplaceOps.

Join2Ops<OP1 extends Op,OP2 extends Op> - Interface in net.imagej.ops.join

A join operation which joins two UnaryComputerOps.

JoinComputerAndInplace<A,BI,BO extends BI> - Interface in net.imagej.ops.join

Joins an UnaryInplaceOp with a UnaryComputerOp.

JoinInplaceAndComputer<AI,AO extends AI,B> - Interface in net.imagej.ops.join

Joins an UnaryInplaceOp with a UnaryComputerOp.

JoinNComputers<A> - Interface in net.imagej.ops.join

A join operation which joins a list of UnaryComputerOps.

JoinNInplaces<I,O extends I> - Interface in net.imagej.ops.join

A join operation which joins a list of UnaryInplaceOps.

JoinNOps<OP extends Op> - Interface in net.imagej.ops.join

A join operation which joins two UnaryComputerOps.

JS_REMOTE_URL - Static variable in class net.imagej.launcher.RemoteUpdater

JsonService - Interface in net.imagej.server.services

jumpBck(long) - Method in class net.imagej.Position

Moves the Position backward the given number of steps.

jumpFwd(long) - Method in class net.imagej.ops.image.integral.IntegralCursor

jumpFwd(long) - Method in class net.imagej.Position

Moves the Position forward the given number of steps.

K

kDTreeRealPointCollection(KDTree<L>) - Method in interface net.imagej.roi.ROIService

Creates a read-only RealPointCollection containing the given points.

kDTreeRealPointCollection(Collection<L>) - Method in interface net.imagej.roi.ROIService

Creates a read-only RealPointCollection containing the given points.

KeepAsIs - Class in net.imagej.updater.action

The no-op action.

KeepAsIs() - Constructor for class net.imagej.updater.action.KeepAsIs

kendallTau(Iterable<T>, Iterable) - Method in class net.imagej.ops.coloc.ColocNamespace

KendallTauBRank<T extends RealType<T>,U extends RealType> - Class in net.imagej.ops.coloc.kendallTau

This algorithm calculates Kendall's Tau-b rank correlation coefficient

KendallTauBRank() - Constructor for class net.imagej.ops.coloc.kendallTau.KendallTauBRank

kernel(double[]...) - Method in class net.imagej.ops.create.CreateNamespace

Executes the "kernel" operation on the given arguments.

kernel(double[][], T) - Method in class net.imagej.ops.create.CreateNamespace

Executes the "kernel" operation on the given arguments.

kernel2ndDerivBiGauss(double[], Integer) - Method in class net.imagej.ops.create.CreateNamespace

Convenience wrapper to create an Img of type DoubleType with an isotropic 2nd derivative of BiGauss kernel.

kernel2ndDerivBiGauss(double[], Integer, T) - Method in class net.imagej.ops.create.CreateNamespace

Creates an Img of the given type and of appropriate dimensions that displays an isotropic 2nd derivative of BiGauss filter.

kernelBiGauss(double[], Integer) - Method in class net.imagej.ops.create.CreateNamespace

Convenience wrapper to create an Img of type DoubleType with an isotropic BiGauss kernel.

kernelBiGauss(double[], Integer, T) - Method in class net.imagej.ops.create.CreateNamespace

Creates an Img of the given type and of appropriate dimensions that displays an isotropic BiGauss filter.

kernelDiffraction(Dimensions, double, double, double, double, double, double, double, T) - Method in class net.imagej.ops.create.CreateNamespace

kernelGabor(Double, double[], T) - Method in class net.imagej.ops.create.CreateNamespace

Convenience wrapper to create an Img of type outType with an isotropic Gabor kernel.

kernelGabor(double[], double[], T) - Method in class net.imagej.ops.create.CreateNamespace

Creates an Img of the given type and of appropriate dimensions that displays a Gabor filter.

kernelGaborComplexDouble(Double, double...) - Method in class net.imagej.ops.create.CreateNamespace

Convenience wrapper to create an Img of type ComplexDoubleType with an isotropic Gabor kernel.

kernelGaborComplexDouble(double[], double...) - Method in class net.imagej.ops.create.CreateNamespace

Convenience wrapper to create an Img of type ComplexDoubleType with a Gabor kernel.

kernelGaborComplexFloat(Double, double...) - Method in class net.imagej.ops.create.CreateNamespace

Convenience wrapper to create an Img of type ComplexFloatType with an isotropic Gabor kernel.

kernelGaborComplexFloat(double[], double...) - Method in class net.imagej.ops.create.CreateNamespace

Convenience wrapper to create an Img of type ComplexFloatType with a Gabor kernel.

kernelGaborDouble(Double, double...) - Method in class net.imagej.ops.create.CreateNamespace

Convenience wrapper to create an Img of type DoubleType with an isotropic Gabor kernel.

kernelGaborDouble(double[], double...) - Method in class net.imagej.ops.create.CreateNamespace

Convenience wrapper to create an Img of type DoubleType with a Gabor kernel.

kernelGaborFloat(Double, double...) - Method in class net.imagej.ops.create.CreateNamespace

Convenience wrapper to create an Img of type FloatType with an isotropic Gabor kernel.

kernelGaborFloat(double[], double...) - Method in class net.imagej.ops.create.CreateNamespace

Convenience wrapper to create an Img of type FloatType with a Gabor kernel.

kernelGauss(double...) - Method in class net.imagej.ops.create.CreateNamespace

Executes the "kernelGauss" operation on the given arguments.

kernelGauss(Double, int, T) - Method in class net.imagej.ops.create.CreateNamespace

Executes the "kernelGauss" operation on the given arguments.

kernelGauss(Double, int) - Method in class net.imagej.ops.create.CreateNamespace

Executes the "kernelGauss" operation on the given arguments.

kernelGauss(double[], T) - Method in class net.imagej.ops.create.CreateNamespace

Executes the "kernelGauss" operation on the given arguments.

kernelLog(double...) - Method in class net.imagej.ops.create.CreateNamespace

Executes the "kernelLog" operation on the given arguments.

kernelLog(Double, int, T) - Method in class net.imagej.ops.create.CreateNamespace

Executes the "kernelLog" operation on the given arguments.

kernelLog(Double, int) - Method in class net.imagej.ops.create.CreateNamespace

Executes the "kernelLog" operation on the given arguments.

kernelLog(double[], T) - Method in class net.imagej.ops.create.CreateNamespace

Executes the "kernelLog" operation on the given arguments.

kernelSobel(T) - Method in class net.imagej.ops.create.CreateNamespace

knownConstant() - Method in class net.imagej.omero.legacy.text.OMEROText

knownConstant() - Method in class net.imagej.omero.legacy.text.TextRoiWrapper

knownConstant() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMask

knownTypes() - Static method in class net.imagej.axis.Axes

KonamiHandler - Class in net.imagej.plugins.tools

Oh, the nostalgia!

KonamiHandler() - Constructor for class net.imagej.plugins.tools.KonamiHandler

kurtosis(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

kurtosis(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

kurtosisExcess() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo

L

label(String, Container) - Static method in class net.imagej.ui.swing.updater.SwingTools

label - Variable in class net.imagej.updater.util.StderrProgress

labelComponent(String, JComponent, Container) - Static method in class net.imagej.ui.swing.updater.SwingTools

labelComponentRigid(String, JComponent) - Static method in class net.imagej.ui.swing.updater.SwingTools

Uses a GridBagLayout to prevent odd resizing behaviours.

LabelImage - Class in net.imagej.tensorflow.demo

Command to use an Inception-image recognition model to label an image.

LabelImage() - Constructor for class net.imagej.tensorflow.demo.LabelImage

labeling() - Method in interface net.imagej.ops.OpEnvironment

Gateway into ops of the "labeling" namespace.

LabelingLabelingFactory<L extends Comparable<L>> - Class in net.imagej.ops.bufferfactories

UnaryOutputFactory used to create an empty output Labeling of same type and dimensionality as the input Labeling

LabelingLabelingFactory() - Constructor for class net.imagej.ops.bufferfactories.LabelingLabelingFactory

labelingMapping(LabelingMapping<L>) - Method in class net.imagej.ops.copy.CopyNamespace

labelingMapping(LabelingMapping<L>, LabelingMapping<L>) - Method in class net.imagej.ops.copy.CopyNamespace

labelingMapping() - Method in class net.imagej.ops.create.CreateNamespace

labelingMapping(int) - Method in class net.imagej.ops.create.CreateNamespace

LabelingNamespace - Class in net.imagej.ops.labeling

Namespace for Ops related to labelings.

LabelingNamespace() - Constructor for class net.imagej.ops.labeling.LabelingNamespace

LabelRegionToPolygonConverter - Class in net.imagej.ops.geom.geom2d

Converts a LabelRegion to a polygon

LabelRegionToPolygonConverter() - Constructor for class net.imagej.ops.geom.geom2d.LabelRegionToPolygonConverter

last() - Method in class net.imagej.Position

Sets the Position to its last state (all dimension positions to max-1)

lastIndexOf(Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

lastIndexOf(Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

lastIndexOf(Object) - Method in class net.imagej.legacy.convert.TableListWrapper

lastIndexOf(Object) - Method in class net.imagej.omero.LazyTableList

lastModified - Variable in class net.imagej.updater.util.Downloader

lastShown - Variable in class net.imagej.updater.util.StderrProgress

latestUpdate - Variable in class net.imagej.ui.swing.updater.ProgressDialog

launch(ClassLoader, String, String[]) - Static method in class net.imagej.launcher.ClassLauncher

launch(String...) - Static method in class net.imagej.Main

Deprecated.
Use AbstractGateway.launch(java.lang.String...) instead.

launch() - Method in class net.imagej.omero.ModuleAdapter

Executes the associated ImageJ module as an OMERO script.

launchers - Variable in class net.imagej.updater.util.UpdaterUtil

launchJar(String, String[]) - Static method in class net.imagej.launcher.JarLauncher

Helper to launch .jar files (by inspecting their Main-Class attribute).

LazyOverlay - Class in net.imagej.omero.legacy

An Overlay which is backed by a LazyROITree.

LazyOverlay(LazyROITree, ConvertService) - Constructor for class net.imagej.omero.legacy.LazyOverlay

LazyROITree - Class in net.imagej.omero.roi

ROITree which downloads the associated ROIs only when the children are requested.

LazyROITree(TreeNode<?>, long, OMEROLocation, OMEROService, LogService) - Constructor for class net.imagej.omero.roi.LazyROITree

LazyTableList - Class in net.imagej.omero

A List<Table<?, ?>> whose elements are downloaded lazily from an OMERO server.

LazyTableList(long, OMEROLocation, OMEROService, LogService) - Constructor for class net.imagej.omero.LazyTableList

lbp() - Method in interface net.imagej.ops.OpEnvironment

Gateway into ops of the "lbp" namespace.

lbp2D(RandomAccessibleInterval<T>, int, int) - Method in class net.imagej.ops.features.lbp2d.LBPNamespace

lbp2D(ArrayList<LongType>, RandomAccessibleInterval<T>, int, int) - Method in class net.imagej.ops.features.lbp2d.LBPNamespace

LBP2DFeature> - Interface in net.imagej.ops.features.lbp2d

Marker interface for 2D local binary pattern feature.

LBPNamespace - Class in net.imagej.ops.features.lbp2d

Namespace for 2d local binary pattern feature

LBPNamespace() - Constructor for class net.imagej.ops.features.lbp2d.LBPNamespace

leastSquares(Collection<Vector3dc>) - Method in class net.imagej.ops.stats.StatsNamespace

leftShift(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator

leftShift(int, int) - Method in class net.imagej.ops.math.MathNamespace

leftShift(long, long) - Method in class net.imagej.ops.math.MathNamespace

LEGACY_OMERO_ROI - Static variable in class net.imagej.omero.legacy.LegacyOMEROROIService

LegacyAdapter - Interface in net.imagej.legacy.ui

Marker interface for classes that adapt between legacy ImageJ and IJ2 constructs.

LegacyAppConfiguration - Interface in net.imagej.legacy.plugin

Interface for configuring the legacy application appearance.

LegacyApplicationFrame - Class in net.imagej.legacy.ui

LegacyAdapter between the ApplicationFrame class and active ij.ImageJ.

LegacyApplicationFrame(LegacyService) - Constructor for class net.imagej.legacy.ui.LegacyApplicationFrame

LegacyAutoImporter - Class in net.imagej.legacy.plugin

LegacyAutoImporter() - Constructor for class net.imagej.legacy.plugin.LegacyAutoImporter

LegacyClassLoader - Class in imagej.patcher

Deprecated.

LegacyClassLoader(boolean) - Constructor for class imagej.patcher.LegacyClassLoader

Deprecated.

LegacyClassLoader - Class in net.imagej.patcher

A special purpose class loader to encapsulate ImageJ 1.x "instances" from each other.

LegacyClassLoader(boolean) - Constructor for class net.imagej.patcher.LegacyClassLoader

LegacyClassLoader() - Constructor for class net.imagej.patcher.LegacyClassLoader

LegacyCodeRunner - Class in net.imagej.legacy

Runs the given ImageJ 1.x PlugIn class.

LegacyCodeRunner() - Constructor for class net.imagej.legacy.LegacyCodeRunner

LegacyCommand - Class in net.imagej.legacy.command

Executes an ImageJ v1.x command.

LegacyCommand() - Constructor for class net.imagej.legacy.command.LegacyCommand

LegacyCommandFinder - Class in net.imagej.legacy.command

Discovers legacy ImageJ 1.x commands.

LegacyCommandFinder(LegacyService) - Constructor for class net.imagej.legacy.command.LegacyCommandFinder

LegacyCommandInfo - Class in net.imagej.legacy.command

Metadata about an ImageJ 1.x PlugIn.

LegacyCommandInfo(MenuPath, String, String, ClassLoader) - Constructor for class net.imagej.legacy.command.LegacyCommandInfo

LegacyCommandline - Class in net.imagej.legacy

Handles the following ImageJ 1.x commands, as per ImageJ's documentation: "file-name" Opens a file
Example 1: blobs.tif
Example 2: /Users/wayne/images/blobs.tif
Example 3: e81*.tif
-macro path [arg] Runs a macro or script (JavaScript, BeanShell or Python), passing an optional string argument, which the macro or script can be retrieve using the getArgument() function.

LegacyCommandline() - Constructor for class net.imagej.legacy.LegacyCommandline

LegacyCommandline.Batch - Class in net.imagej.legacy

Implements -batch path [arg] and -batch-no-exit path [arg].

LegacyCommandline.Debug - Class in net.imagej.legacy

Implements -debug.

LegacyCommandline.Eval - Class in net.imagej.legacy

Implements -eval "macro code".

LegacyCommandline.Filename - Class in net.imagej.legacy

Handles "file-name".

LegacyCommandline.IJPath - Class in net.imagej.legacy

Implements -ijpath path.

LegacyCommandline.Macro - Class in net.imagej.legacy

Implements -macro path [arg].

LegacyCommandline.Port - Class in net.imagej.legacy

Implements -port<n>.

LegacyCommandline.Run - Class in net.imagej.legacy

Implements -run command.

LegacyDialogPrompt - Class in net.imagej.legacy.ui

LegacyAdapter implementation for adapting between DialogPrompt and the ImageJ1 dialog prompts.

LegacyDialogPrompt(LegacyService, String, String, DialogPrompt.OptionType) - Constructor for class net.imagej.legacy.ui.LegacyDialogPrompt

LegacyDisplayViewer - Interface in net.imagej.legacy.display

Marker interface to indicate display viewers that do not need a display window, as ImageJ1 will be handling the display.

LegacyEditor - Interface in net.imagej.legacy.plugin

A minimal interface for the editor to use instead of ImageJ 1.x' limited AWT-based one.

legacyEnabled() - Method in class net.imagej.legacy.convert.AbstractLegacyConverter

LegacyEnvironment - Class in imagej.patcher

Deprecated.

LegacyEnvironment(ClassLoader, boolean) - Constructor for class imagej.patcher.LegacyEnvironment

Deprecated.

Constructs a new legacy environment.

LegacyEnvironment - Class in net.imagej.patcher

Encapsulates an ImageJ 1.x "instance".

LegacyEnvironment(ClassLoader, boolean) - Constructor for class net.imagej.patcher.LegacyEnvironment

Constructs a new legacy environment.

LegacyHooks - Class in imagej.patcher

Deprecated.

LegacyHooks() - Constructor for class imagej.patcher.LegacyHooks

Deprecated.

LegacyHooks - Class in net.imagej.patcher

Extension points for ImageJ 1.x.

LegacyHooks() - Constructor for class net.imagej.patcher.LegacyHooks

LegacyHooks.FatJarNameComparator - Class in imagej.patcher

Deprecated.

LegacyHooks.FatJarNameComparator - Class in net.imagej.patcher

Comparator to ensure that problematic fat JARs are sorted last.

LegacyImageDisplayService - Class in net.imagej.legacy.display

HACK - this whole service exists as a hack to facilitate running commands that require a Dataset without requiring ImageJ2 synchronization to be enabled via Edit>Options>ImageJ2.

LegacyImageDisplayService() - Constructor for class net.imagej.legacy.display.LegacyImageDisplayService

LegacyImageDisplayViewer - Class in net.imagej.legacy.display

Default ImageDisplayViewer implementation for viewing the IJ2 Dataset and Data outputs via an ImagePlus.

LegacyImageDisplayViewer() - Constructor for class net.imagej.legacy.display.LegacyImageDisplayViewer

LegacyImageJApp - Class in net.imagej.legacy

Application metadata and operations for ImageJ 1.x.

LegacyImageJApp() - Constructor for class net.imagej.legacy.LegacyImageJApp

LegacyImageMap - Class in net.imagej.legacy

An image map between legacy ImageJ ImagePlus objects and modern ImageJ ImageDisplays.

LegacyImageMap(LegacyService) - Constructor for class net.imagej.legacy.LegacyImageMap

LegacyInitializer - Class in net.imagej.legacy.plugin

The ij1-patcher defaults to running this class whenever a new PluginClassLoader is initialized.

LegacyInitializer() - Constructor for class net.imagej.legacy.plugin.LegacyInitializer

LegacyInjector - Class in imagej.patcher

Deprecated.

LegacyInjector() - Constructor for class imagej.patcher.LegacyInjector

Deprecated.

LegacyInjector - Class in net.imagej.patcher

Overrides class behavior of ImageJ1 classes using bytecode manipulation.

LegacyInjector() - Constructor for class net.imagej.patcher.LegacyInjector

LegacyInputHarvester - Class in net.imagej.legacy.ui

Trivial Legacy extension of the SwingInputHarvester.

LegacyInputHarvester() - Constructor for class net.imagej.legacy.ui.LegacyInputHarvester

LegacyOMEROROIService - Class in net.imagej.omero.legacy

A ROIService for working with ROIs in OMERO and imagej-legacy.

LegacyOMEROROIService() - Constructor for class net.imagej.omero.legacy.LegacyOMEROROIService

LegacyOMEROService - Class in net.imagej.omero.legacy

OMEROService which can handle ImageJ 1.x data structures.

LegacyOMEROService() - Constructor for class net.imagej.omero.legacy.LegacyOMEROService

LegacyOpener - Interface in net.imagej.legacy.plugin

Extension point for actions to be executed after Help>Refresh Menus.

LegacyPostRefreshMenus - Interface in net.imagej.legacy.plugin

Extension point for actions to be executed after Help>Refresh Menus.

LegacyROIPreprocessor - Class in net.imagej.omero.legacy

If a ROITree is required, this preprocessor takes the active ImagePlus's overlay and converts it into a ROITree.

LegacyROIPreprocessor() - Constructor for class net.imagej.omero.legacy.LegacyROIPreprocessor

legacyService - Variable in class net.imagej.legacy.convert.AbstractLegacyConverter

legacyService - Variable in class net.imagej.legacy.LegacyCommandline

LegacyService - Class in net.imagej.legacy

Service for working with legacy ImageJ 1.x.

LegacyService() - Constructor for class net.imagej.legacy.LegacyService

LegacyStatusBar - Class in net.imagej.legacy.ui

Adapter StatusBar implementation that delegates to legacy ImageJ methods.

LegacyStatusBar(LegacyService) - Constructor for class net.imagej.legacy.ui.LegacyStatusBar

LegacyToolBar - Class in net.imagej.legacy.ui

LegacyAdapter implementation for adapting between ToolBar and the ImageJ1 tool bar.

LegacyToolBar(LegacyService) - Constructor for class net.imagej.legacy.ui.LegacyToolBar

LegacyUI - Class in net.imagej.legacy.ui

Swing-based UserInterface implementation for working between ImageJ2 (net.imagej.*) and ImageJ1 (ij.*) applications.

LegacyUI() - Constructor for class net.imagej.legacy.ui.LegacyUI

LegacyUtils - Class in net.imagej.legacy.translate

A bag of static methods used throughout the translation layer

LegacyUtils() - Constructor for class net.imagej.legacy.translate.LegacyUtils

lessThan(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator

lessThan(int, int) - Method in class net.imagej.ops.logic.LogicNamespace

lessThan(long, long) - Method in class net.imagej.ops.logic.LogicNamespace

lessThan(float, float) - Method in class net.imagej.ops.logic.LogicNamespace

lessThan(double, double) - Method in class net.imagej.ops.logic.LogicNamespace

lessThan(O, I, I) - Method in class net.imagej.ops.logic.LogicNamespace

lessThanOrEqual(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator

lessThanOrEqual(int, int) - Method in class net.imagej.ops.logic.LogicNamespace

lessThanOrEqual(long, long) - Method in class net.imagej.ops.logic.LogicNamespace

lessThanOrEqual(float, float) - Method in class net.imagej.ops.logic.LogicNamespace

lessThanOrEqual(double, double) - Method in class net.imagej.ops.logic.LogicNamespace

lessThanOrEqual(O, I, I) - Method in class net.imagej.ops.logic.LogicNamespace

Li() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Li

li(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

li(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

li(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

li(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

li(IterableInterval, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

li(IterableInterval, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

LiICQ<T extends RealType<T>,U extends RealType> - Class in net.imagej.ops.coloc.icq

This algorithm calculates Li et al.'s ICQ (intensity correlation quotient).

LiICQ() - Constructor for class net.imagej.ops.coloc.icq.LiICQ

linalg() - Method in interface net.imagej.ops.OpEnvironment

Gateway into ops of the "linalg" namespace

LinAlgNamespace - Class in net.imagej.ops.linalg

The linear algebra namespace has ops for vectors and matrices.

LinAlgNamespace() - Constructor for class net.imagej.ops.linalg.LinAlgNamespace

line(RealLocalizable, RealLocalizable) - Method in interface net.imagej.roi.ROIService

Creates a WritableLine with the given endpoints.

line(double[], double[], boolean) - Method in interface net.imagej.roi.ROIService

Creates a WritableLine with the given endpoints.

LinearAxis - Interface in net.imagej.axis

A CalibratedAxis that scales coordinates along the axis in a linear fashion.

LinearCalibrator - Class in net.imagej.units

LinearCalibrator is a Calibrator that maps values linearly from an input space to an output space.

LinearCalibrator(double, double) - Constructor for class net.imagej.units.LinearCalibrator

linearFilter(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, BinaryComputerOp<RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>>) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "linearFilter" operation on the given arguments.

linearFilter(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, BinaryComputerOp<RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>>) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "linearFilter" operation on the given arguments.

linearFilter(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, BinaryComputerOp<RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>>) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "linearFilter" operation on the given arguments.

linearFilter(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, BinaryComputerOp<RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>>) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "linearFilter" operation on the given arguments.

linearFilter(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, BinaryComputerOp<RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>>) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "linearFilter" operation on the given arguments.

LinearSpace<A extends LinearAxis> - Interface in net.imagej.space

A CalibratedSpace whose axes are of type LinearAxis.

LineJHotDrawAdapter - Class in net.imagej.ui.swing.overlay

JHotDraw adapter for line overlays.

LineJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.LineJHotDrawAdapter

LineOverlay - Class in net.imagej.overlay

Represents a line going from here to there, possibly with arrows on one end, the other or both.

LineOverlay() - Constructor for class net.imagej.overlay.LineOverlay

LineOverlay(Context) - Constructor for class net.imagej.overlay.LineOverlay

LineOverlay(Context, double[], double[]) - Constructor for class net.imagej.overlay.LineOverlay

lineTo(long, long) - Method in class net.imagej.DrawingTool

Draws a line in the current UV plane from the current origin to the specified coordinate.

LineToIJLineConverter - Class in net.imagej.legacy.convert.roi.line

Converts a Line to a Line.

LineToIJLineConverter() - Constructor for class net.imagej.legacy.convert.roi.line.LineToIJLineConverter

lineWidth - Variable in class net.imagej.updater.util.StderrProgress

LineWrapper - Class in net.imagej.legacy.convert.roi.line

A Line with an associated WritableLine.

LineWrapper(WritableLine) - Constructor for class net.imagej.legacy.convert.roi.line.LineWrapper

link(String, ActionListener) - Method in class net.imagej.ui.swing.updater.DiffView

Add a link.

link(String) - Method in class net.imagej.ui.swing.updater.FileDetails

linkOverlay(F, JHotDrawAdapter<F>, ImageDisplay) - Method in class net.imagej.ui.swing.overlay.JHotDrawService

Links a new Overlay and OverlayView, created by the given JHotDrawAdapter, to the specified JHotDraw Figure of a particular ImageDisplay.

list(String, boolean, Iterable<?>, String, FileObject) - Method in class net.imagej.ui.swing.updater.FileDetails

list(List<String>, FilesCollection.Filter) - Method in class net.imagej.updater.CommandLine

list(List<String>) - Method in class net.imagej.updater.CommandLine

ListBlackTopHat<T extends RealType<T>> - Class in net.imagej.ops.morphology.blackTopHat

Computes the black-top-hat of a RandomAccessibleInterval using a List of Shapes.

ListBlackTopHat() - Constructor for class net.imagej.ops.morphology.blackTopHat.ListBlackTopHat

listClicked() - Method in class net.imagej.plugins.commands.display.HistogramPlot

ListClose<T extends RealType<T>> - Class in net.imagej.ops.morphology.close

Computes the closing of a RandomAccessibleInterval using a List of Shapes.

ListClose() - Constructor for class net.imagej.ops.morphology.close.ListClose

listCurrent(List<String>) - Method in class net.imagej.updater.CommandLine

ListDilate<T extends RealType<T>> - Class in net.imagej.ops.morphology.dilate

Computes the dilation of a RandomAccessibleInterval using a List of Shapes.

ListDilate() - Constructor for class net.imagej.ops.morphology.dilate.ListDilate

listener - Variable in class net.imagej.patcher.HeadlessGenericDialog

ListErode<T extends RealType<T>> - Class in net.imagej.ops.morphology.erode

Computes the erosion of a RandomAccessibleInterval using a List of Shapes.

ListErode() - Constructor for class net.imagej.ops.morphology.erode.ListErode

listFromSite(List<String>) - Method in class net.imagej.updater.CommandLine

listIssues() - Method in class net.imagej.ui.swing.updater.ConflictDialog

listIterator() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

listIterator(int) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

listIterator() - Method in class net.imagej.legacy.convert.ResultsTableWrapper

listIterator(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

listIterator() - Method in class net.imagej.legacy.convert.TableListWrapper

listIterator(int) - Method in class net.imagej.legacy.convert.TableListWrapper

listIterator() - Method in class net.imagej.omero.LazyTableList

listIterator(int) - Method in class net.imagej.omero.LazyTableList

listLocalOnly(List<String>) - Method in class net.imagej.updater.CommandLine

listModified(List<String>) - Method in class net.imagej.updater.CommandLine

listNotUptodate(List<String>) - Method in class net.imagej.updater.CommandLine

ListOpen<T extends RealType<T>> - Class in net.imagej.ops.morphology.open

Computes the closing of a RandomAccessibleInterval using a List of Shapes.

ListOpen() - Constructor for class net.imagej.ops.morphology.open.ListOpen

listShadowed(List<String>) - Method in class net.imagej.updater.CommandLine

ListShortcuts - Class in net.imagej.plugins.commands.app

Lists ImageJ commands with keyboard shortcuts in a table.

ListShortcuts() - Constructor for class net.imagej.plugins.commands.app.ListShortcuts

ListToHTMLConverter - Class in net.imagej.notebook.mime

Converter from List to HTMLObject.

ListToHTMLConverter() - Constructor for class net.imagej.notebook.mime.ListToHTMLConverter

ListTopHat<T extends RealType<T>> - Class in net.imagej.ops.morphology.topHat

Computes the top-hat of a RandomAccessibleInterval using a List of Shapes.

ListTopHat() - Constructor for class net.imagej.ops.morphology.topHat.ListTopHat

listUpdateable(List<String>) - Method in class net.imagej.updater.CommandLine

listUpdateIssues() - Method in class net.imagej.updater.Conflicts

listUpdateSites(Collection<String>) - Method in class net.imagej.updater.CommandLine

listUploadIssues() - Method in class net.imagej.updater.Conflicts

listUptodate(List<String>) - Method in class net.imagej.updater.CommandLine

liveClicked() - Method in class net.imagej.plugins.commands.display.HistogramPlot

load() - Method in class net.imagej.options.OptionsChannels

load() - Method in class net.imagej.options.OptionsMemoryAndThreads

Loads the instance variable fields from persistent storage.

loadCachedModel(Location, String, String...) - Method in class net.imagej.tensorflow.DefaultTensorFlowService

loadCachedModel(Location, String, String...) - Method in interface net.imagej.tensorflow.TensorFlowService

Extracts a persisted model from the given location.

LoadDataset - Class in net.imagej.plugins.commands.dataset

Dummy helper plugin that turns a Dataset into a Display by passing it through the plugin service.

LoadDataset() - Constructor for class net.imagej.plugins.commands.dataset.LoadDataset

loadFile(Location, String, String) - Method in class net.imagej.tensorflow.DefaultTensorFlowService

loadFile(Location, String, String) - Method in interface net.imagej.tensorflow.TensorFlowService

Extracts a file from the given location.

loadGraph(Location, String, String) - Method in class net.imagej.tensorflow.DefaultTensorFlowService

loadGraph(Location, String, String) - Method in interface net.imagej.tensorflow.TensorFlowService

Extracts a graph from the given location.

loadImage(OMEROFormat.Metadata) - Method in class net.imagej.omero.DefaultOMEROSession

loadImage(OMEROFormat.Metadata) - Method in interface net.imagej.omero.OMEROSession

Gets an OMERO Image descriptor, loading remotely as needed.

loadImageName(OMEROFormat.Metadata) - Method in class net.imagej.omero.DefaultOMEROSession

loadImageName(OMEROFormat.Metadata) - Method in interface net.imagej.omero.OMEROSession

Gets the metadata's associated image name, loading remotely as needed.

loadLabels(Location, String, String) - Method in class net.imagej.tensorflow.DefaultTensorFlowService

loadLabels(Location, String, String) - Method in interface net.imagej.tensorflow.TensorFlowService

Extracts labels from the given location.

loadLegacyClass() - Method in class net.imagej.legacy.command.LegacyCommandInfo

Gets the class backing this legacy command, loading it as needed.

loadLibrary() - Method in class net.imagej.tensorflow.DefaultTensorFlowService

Loads the TensorFlow library.

loadLibrary() - Method in interface net.imagej.tensorflow.TensorFlowService

Loads the TensorFlow Library.

loadLUT(File) - Method in class net.imagej.lut.DefaultLUTService

loadLUT(URL) - Method in class net.imagej.lut.DefaultLUTService

loadLUT(InputStream) - Method in class net.imagej.lut.DefaultLUTService

loadLUT(InputStream, int) - Method in class net.imagej.lut.DefaultLUTService

loadLUT(File) - Method in interface net.imagej.lut.LUTService

Loads a ColorTable from a File.

loadLUT(URL) - Method in interface net.imagej.lut.LUTService

Loads a ColorTable from a URL.

loadLUT(InputStream) - Method in interface net.imagej.lut.LUTService

Loads a ColorTable from an input stream.

loadLUT(InputStream, int) - Method in interface net.imagej.lut.LUTService

Loads a ColorTable from an input stream with the given expected length.

loadModel(Location, String, String...) - Method in class net.imagej.tensorflow.DefaultTensorFlowService

Deprecated.

loadModel(Location, String, String...) - Method in interface net.imagej.tensorflow.TensorFlowService

Deprecated.

loadPixels(OMEROFormat.Metadata) - Method in class net.imagej.omero.DefaultOMEROSession

loadPixels(OMEROFormat.Metadata) - Method in interface net.imagej.omero.OMEROSession

Gets an OMERO Pixels descriptor, loading remotely as needed.

loadPixelsID(OMEROFormat.Metadata) - Method in class net.imagej.omero.DefaultOMEROSession

loadPixelsID(OMEROFormat.Metadata) - Method in interface net.imagej.omero.OMEROSession

Gets the metadata's associated pixels ID, loading remotely as needed.

loadROIs() - Method in class net.imagej.omero.legacy.LazyOverlay

If the ROIs have not already been downloaded, this downloads the ROIs from the OMERO server.

local - Variable in class net.imagej.ui.swing.updater.DiffFile

LocalBernsenThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.localBernsen

LocalThresholdMethod which is similar to LocalMidGreyThreshold, but uses a constant value rather than the value of the input pixel when the contrast in the neighborhood of that pixel is too small.

LocalBernsenThreshold() - Constructor for class net.imagej.ops.threshold.localBernsen.LocalBernsenThreshold

localBernsenThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localBernsenThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localChecksum - Variable in class net.imagej.updater.FileObject

LocalContrastThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.localContrast

LocalThresholdMethod which determines whether a pixel is closer to the maximum or minimum pixel of a neighborhood.

LocalContrastThreshold() - Constructor for class net.imagej.ops.threshold.localContrast.LocalContrastThreshold

localContrastThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localContrastThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localFilename - Variable in class net.imagej.updater.FileObject

LocalHuangThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalHuangThreshold

LocalIJ1Threshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalIJ1Threshold

LocalIntermodesThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalIntermodesThreshold

LocalIsoDataThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalIsoDataThreshold

localize(int[]) - Method in class net.imagej.display.AbstractDataView

localize(long[]) - Method in class net.imagej.display.AbstractDataView

localize(float[]) - Method in class net.imagej.display.AbstractDataView

localize(double[]) - Method in class net.imagej.display.AbstractDataView

localize(int[]) - Method in class net.imagej.display.DefaultImageDisplay

localize(long[]) - Method in class net.imagej.display.DefaultImageDisplay

localize(float[]) - Method in class net.imagej.display.DefaultImageDisplay

localize(double[]) - Method in class net.imagej.display.DefaultImageDisplay

localize(float[]) - Method in interface net.imagej.mesh.Vertex

localize(double[]) - Method in interface net.imagej.mesh.Vertex

localize(float[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint

localize(double[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint

localize(float[]) - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex

localize(double[]) - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex

localize(long[]) - Method in class net.imagej.ops.image.integral.IntegralCursor

localize(float[]) - Method in class net.imagej.ops.image.integral.IntegralCursor

localize(double[]) - Method in class net.imagej.ops.image.integral.IntegralCursor

localize(int[]) - Method in class net.imagej.ops.image.integral.IntegralCursor

localize(int[]) - Method in class net.imagej.Position

Populates a given int[] with the current Position's coordinates

localize(long[]) - Method in class net.imagej.Position

Populates a given long[] with the current Position's coordinates

localize(float[]) - Method in class net.imagej.Position

Populates a given float[] with the current Position's coordinates

localize(double[]) - Method in class net.imagej.Position

Populates a given double[] with the current Position's coordinates

localizingCursor() - Method in class net.imagej.DefaultDataset

localizingCursor() - Method in class net.imagej.ImgPlus

localizingCursor() - Method in class net.imagej.ops.slice.SlicesII

localizingCursor() - Method in class net.imagej.table.ResultsImg

LocalLiThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalLiThreshold

locallyModified(FileObject, FilesCollection) - Method in class net.imagej.updater.Conflicts

locallyModified() - Method in class net.imagej.updater.FilesCollection

LocalMaxEntropyThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMaxEntropyThreshold

LocalMaxLikelihoodThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMaxLikelihoodThreshold

LocalMeanThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.localMean

LocalThresholdMethod that uses the mean and operates directly of RAIs.

LocalMeanThreshold() - Constructor for class net.imagej.ops.threshold.localMean.LocalMeanThreshold

localMeanThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localMeanThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localMeanThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localMeanThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

LocalMeanThresholdIntegral<T extends RealType<T>> - Class in net.imagej.ops.threshold.localMean

Local threshold method that uses the IntegralMean for the threshold computation.

LocalMeanThresholdIntegral() - Constructor for class net.imagej.ops.threshold.localMean.LocalMeanThresholdIntegral

LocalMedianThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.localMedian

LocalThresholdMethod using median.

LocalMedianThreshold() - Constructor for class net.imagej.ops.threshold.localMedian.LocalMedianThreshold

localMedianThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localMedianThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

LocalMidGreyThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.localMidGrey

LocalThresholdMethod which thresholds against the average of the maximum and minimum pixels of a neighborhood.

LocalMidGreyThreshold() - Constructor for class net.imagej.ops.threshold.localMidGrey.LocalMidGreyThreshold

localMidGreyThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localMidGreyThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

LocalMinErrorThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMinErrorThreshold

LocalMinimumThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMinimumThreshold

LocalMomentsThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMomentsThreshold

LocalNiblackThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.localNiblack

LocalThresholdMethod using Niblack's thresholding method.

LocalNiblackThreshold() - Constructor for class net.imagej.ops.threshold.localNiblack.LocalNiblackThreshold

localNiblackThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localNiblackThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localNiblackThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localNiblackThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

LocalNiblackThresholdIntegral<T extends RealType<T>> - Class in net.imagej.ops.threshold.localNiblack

Niblack's local thresholding algorithm.

LocalNiblackThresholdIntegral() - Constructor for class net.imagej.ops.threshold.localNiblack.LocalNiblackThresholdIntegral

localOnly() - Method in class net.imagej.updater.FilesCollection

LocalOtsuThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalOtsuThreshold

LocalPercentileThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalPercentileThreshold

LocalPhansalkarThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.localPhansalkar

This is a modification of Sauvola's thresholding method to deal with low contrast images.

LocalPhansalkarThreshold() - Constructor for class net.imagej.ops.threshold.localPhansalkar.LocalPhansalkarThreshold

localPhansalkarThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localPhansalkarThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localPhansalkarThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localPhansalkarThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localPhansalkarThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localPhansalkarThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localPhansalkarThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localPhansalkarThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

LocalPhansalkarThresholdIntegral<T extends RealType<T>> - Class in net.imagej.ops.threshold.localPhansalkar

Local thresholding algorithm as proposed by Phansalkar et al.

LocalPhansalkarThresholdIntegral() - Constructor for class net.imagej.ops.threshold.localPhansalkar.LocalPhansalkarThresholdIntegral

LocalRenyiEntropyThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalRenyiEntropyThreshold

LocalRosinThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalRosinThreshold

LocalSauvolaThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.localSauvola

This is a modification of Niblack's thresholding method.

LocalSauvolaThreshold() - Constructor for class net.imagej.ops.threshold.localSauvola.LocalSauvolaThreshold

localSauvolaThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localSauvolaThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localSauvolaThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localSauvolaThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localSauvolaThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localSauvolaThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localSauvolaThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

localSauvolaThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

LocalSauvolaThresholdIntegral<T extends RealType<T>> - Class in net.imagej.ops.threshold.localSauvola

Local thresholding algorithm as proposed by Sauvola et al.

LocalSauvolaThresholdIntegral() - Constructor for class net.imagej.ops.threshold.localSauvola.LocalSauvolaThresholdIntegral

LocalShanbhagThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalShanbhagThreshold

LocalThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.apply

Apply a local thresholding method to an image, optionally using a out of bounds strategy.

LocalThreshold() - Constructor for class net.imagej.ops.threshold.apply.LocalThreshold

LocalThresholdIntegral> - Class in net.imagej.ops.threshold.apply

Apply a local thresholding method to an image using integral images for speed up, optionally using a out of bounds strategy.

LocalThresholdIntegral() - Constructor for class net.imagej.ops.threshold.apply.LocalThresholdIntegral

LocalThresholdMethod<T extends RealType<T>> - Class in net.imagej.ops.threshold

AbstractCenterAwareComputerOp for use in LocalThresholds.

LocalThresholdMethod() - Constructor for class net.imagej.ops.threshold.LocalThresholdMethod

LocalThresholdMethodHistogram<T extends RealType<T>,O extends BooleanType<O>> - Class in net.imagej.ops.threshold

AbstractCenterAwareComputerOp for use in LocalThresholds.

LocalThresholdMethodHistogram() - Constructor for class net.imagej.ops.threshold.LocalThresholdMethodHistogram

localTimestamp - Variable in class net.imagej.updater.FileObject

LocalTriangleThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalTriangleThreshold

LocalYenThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalYenThreshold

log(String) - Method in class imagej.patcher.LegacyHooks

Deprecated.

Logs a message.

log(String) - Method in class net.imagej.legacy.DefaultLegacyHooks

log - Variable in class net.imagej.legacy.LegacyCommandline

log() - Method in class net.imagej.legacy.LegacyService

Gets the LogService associated with this LegacyService.

log - Variable in class net.imagej.notebook.mime.MIMEConverter

log(double) - Method in class net.imagej.ops.math.MathNamespace

log(O, I) - Method in class net.imagej.ops.math.MathNamespace

Log() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Log

log(String) - Method in class net.imagej.patcher.LegacyHooks

Logs a message.

log - Variable in class net.imagej.plugins.uploaders.ssh.SFTPFileUploader

log - Variable in class net.imagej.ui.swing.updater.DiffFile

log - Variable in class net.imagej.ui.swing.updater.SwingUserInterface

log(String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface

log - Variable in class net.imagej.ui.swing.updater.UpdaterFrame

log(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface

log - Static variable in class net.imagej.updater.CommandLine

log - Variable in class net.imagej.updater.FilesCollection

log(String) - Method in class net.imagej.updater.util.UpdaterUserInterface

log - Variable in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface

log(String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface

log10(double) - Method in class net.imagej.ops.math.MathNamespace

log10(O, I) - Method in class net.imagej.ops.math.MathNamespace

Log10() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Log10

log2(O, I) - Method in class net.imagej.ops.math.MathNamespace

Log2() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Log2

logClicked() - Method in class net.imagej.plugins.commands.display.HistogramPlot

LogDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign

Fills an output Dataset by taking the log of an input Dataset.

LogDataValues() - Constructor for class net.imagej.plugins.commands.assign.LogDataValues

logic() - Method in interface net.imagej.ops.OpEnvironment

Gateway into ops of the "logic" namespace.

logicalAnd(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator

logicalOr(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator

LogicNamespace - Class in net.imagej.ops.logic

The logic namespace contains logical (i.e., boolean) operations.

LogicNamespace() - Constructor for class net.imagej.ops.logic.LogicNamespace

login(FilesUploader) - Method in class net.imagej.plugins.uploaders.ssh.SFTPFileUploader

login(FilesUploader) - Method in class net.imagej.plugins.uploaders.ssh.SSHFileUploader

login(FilesUploader) - Method in class net.imagej.plugins.uploaders.webdav.WebDAVUploader

login(FilesUploader) - Method in class net.imagej.updater.AbstractUploader

login() - Method in class net.imagej.updater.FilesUploader

login(FilesUploader) - Method in interface net.imagej.updater.Uploader

TODO

login(String, String) - Method in class net.imagej.util.MediaWikiClient

LogLinearAxis - Class in net.imagej.axis

LogLinearAxis is a CalibratedAxis that scales raw values by the equation y = a + b * ln(c + d*x).

LogLinearAxis() - Constructor for class net.imagej.axis.LogLinearAxis

LogLinearAxis(AxisType) - Constructor for class net.imagej.axis.LogLinearAxis

LogLinearAxis(AxisType, String) - Constructor for class net.imagej.axis.LogLinearAxis

LogLinearAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.LogLinearAxis

logOnePlusX(double) - Method in class net.imagej.ops.math.MathNamespace

logOnePlusX(O, I) - Method in class net.imagej.ops.math.MathNamespace

LogOnePlusX() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.LogOnePlusX

logout() - Method in class net.imagej.plugins.uploaders.ssh.SFTPFileUploader

logout() - Method in class net.imagej.plugins.uploaders.ssh.SSHFileUploader

logout() - Method in class net.imagej.plugins.uploaders.webdav.WebDAVUploader

logout() - Method in class net.imagej.updater.AbstractUploader

logout() - Method in class net.imagej.updater.FilesUploader

logout() - Method in interface net.imagej.updater.Uploader

TODO

logout() - Method in class net.imagej.util.MediaWikiClient

logService - Variable in class net.imagej.ops.thread.chunker.ChunkerInterleaved

logService - Variable in class net.imagej.ops.thread.chunker.DefaultChunker

LongAbs() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongAbs

LongAdd() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongAdd

LongAnd() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongAnd

LongComplement() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongComplement

LongDivide() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongDivide

LongEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.LongEqual

LongGreaterThan() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.LongGreaterThan

LongGreaterThanOrEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.LongGreaterThanOrEqual

LongLeftShift() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongLeftShift

LongLessThan() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.LongLessThan

LongLessThanOrEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.LongLessThanOrEqual

LongMax() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongMax

LongMin() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongMin

LongMultiply() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongMultiply

longName() - Method in interface net.imagej.types.DataType

A long name useful for displaying to user.

longName() - Method in class net.imagej.types.DataType128BitSignedComplexFloat

longName() - Method in class net.imagej.types.DataType12BitUnsignedInteger

longName() - Method in class net.imagej.types.DataType16BitSignedInteger

longName() - Method in class net.imagej.types.DataType16BitUnsignedInteger

longName() - Method in class net.imagej.types.DataType1BitUnsignedInteger

longName() - Method in class net.imagej.types.DataType32BitSignedFloat

longName() - Method in class net.imagej.types.DataType32BitSignedInteger

longName() - Method in class net.imagej.types.DataType32BitUnsignedInteger

longName() - Method in class net.imagej.types.DataType64BitSignedComplexFloat

longName() - Method in class net.imagej.types.DataType64BitSignedFloat

longName() - Method in class net.imagej.types.DataType64BitSignedInteger

longName() - Method in class net.imagej.types.DataType8BitSignedInteger

longName() - Method in class net.imagej.types.DataType8BitUnsignedInteger

longName() - Method in class net.imagej.types.DataTypeBoolean

longName() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat

longName() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat

longName() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger

LongNegate() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongNegate

LongNotEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.LongNotEqual

LongOr() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongOr

LongRemainder() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongRemainder

LongRightShift() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongRightShift

LongSubtract() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongSubtract

LongTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.LongTableToResultsTable

LongToLongTypeConverter() - Constructor for class net.imagej.server.converter.NumberToNumericTypeConverters.LongToLongTypeConverter

LongUnsignedRightShift() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongUnsignedRightShift

LongXor() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongXor

LookupByName - Class in net.imagej.ops.lookup

Implementation of "op" that finds the op by name.

LookupByName() - Constructor for class net.imagej.ops.lookup.LookupByName

LookupByType - Class in net.imagej.ops.lookup

Implementation of "op" that finds the op by type.

LookupByType() - Constructor for class net.imagej.ops.lookup.LookupByType

lookupDisplay(ImagePlus) - Method in class net.imagej.legacy.LegacyImageMap

Gets the ImageDisplay corresponding to the given ImagePlus, or null if there is no existing table entry.

lookupImagePlus(ImageDisplay) - Method in class net.imagej.legacy.LegacyImageMap

Gets the ImagePlus corresponding to the given ImageDisplay, or null if there is no existing table entry.

loop(O, UnaryInplaceOp<I, O>, int) - Method in interface net.imagej.ops.OpEnvironment

Executes the "loop" operation on the given arguments.

loop(A, A, UnaryComputerOp<A, A>, UnaryOutputFactory<A, A>, int) - Method in interface net.imagej.ops.OpEnvironment

Executes the "loop" operation on the given arguments.

LoopComputer - Interface in net.imagej.ops.loop

Loops over an injected UnaryComputerOp.

LoopInplace<I,O extends I> - Interface in net.imagej.ops.loop

Loops over an injected UnaryInplaceOp.

LoopOp<OP extends Op> - Interface in net.imagej.ops.loop

A typed "loop" operation.

lowerBound(T) - Method in interface net.imagej.types.DataType

Sets a given variable to the lower bound of the underlying NumericType.

lowerBound(ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat

lowerBound(Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger

lowerBound(ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger

lowerBound(UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger

lowerBound(BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger

lowerBound(FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat

lowerBound(IntType) - Method in class net.imagej.types.DataType32BitSignedInteger

lowerBound(UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger

lowerBound(ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat

lowerBound(DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat

lowerBound(LongType) - Method in class net.imagej.types.DataType64BitSignedInteger

lowerBound(ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger

lowerBound(UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger

lowerBound(NativeBoolType) - Method in class net.imagej.types.DataTypeBoolean

lowerBound(BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat

lowerBound(PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat

lowerBound(UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger

lut() - Method in class net.imagej.ImageJ

Gets this application context's LUTService.

LUTFileDragAndDropHandler - Class in net.imagej.ui.dnd

Drag-and-drop handler for ColorTable files.

LUTFileDragAndDropHandler() - Constructor for class net.imagej.ui.dnd.LUTFileDragAndDropHandler

LUTFinder - Class in net.imagej.lut

Deprecated.
Use LUTService.findLUTs() instead.

LUTFinder() - Constructor for class net.imagej.lut.LUTFinder

Deprecated.

LUTIOPlugin - Class in net.imagej.lut.io

I/O plugin for ColorTables.

LUTIOPlugin() - Constructor for class net.imagej.lut.io.LUTIOPlugin

LUTsChangedEvent - Class in net.imagej.display.event

An event indicating a change in the composition of color tables of a view.

LUTsChangedEvent(DataView) - Constructor for class net.imagej.display.event.LUTsChangedEvent

LUTSelector - Class in net.imagej.lut

Applies a ColorTable to an ImageDisplay.

LUTSelector() - Constructor for class net.imagej.lut.LUTSelector

LUTService - Interface in net.imagej.lut

The LUTService loads ColorTables (i.e., Look-Up Tables or LUTs) from various data sources.

M

m_background - Variable in class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning

Boolean value of the background.

m_foreground - Variable in class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning

Boolean value of the foreground.

m_strategy - Variable in class net.imagej.ops.morphology.thin.AbstractThin

m_typedAxis - Variable in class net.imagej.ui.swing.widget.SwingDimSelectionWidget

macPrefix - Static variable in class net.imagej.updater.util.UpdaterUtil

Macro() - Constructor for class net.imagej.legacy.LegacyCommandline.Macro

MacroExtensionAutoCompletionPlugin - Interface in net.imagej.legacy.plugin

MacroExtensionAutoCompletionPlugin This interface must be implemented in order to extend the auto completion list of the Script editor.

MacroExtensionAutoCompletionService - Class in net.imagej.legacy.plugin

This service manages extensions to the auto-complete pull down of the script editor.

MacroExtensionAutoCompletionService() - Constructor for class net.imagej.legacy.plugin.MacroExtensionAutoCompletionService

MacroLanguageSupportPlugin - Class in net.imagej.legacy.plugin

LanguageSupportPlugin making basic auto-completion available for IJ macro scripts.

MacroLanguageSupportPlugin() - Constructor for class net.imagej.legacy.plugin.MacroLanguageSupportPlugin

MacroPreprocessor - Class in net.imagej.legacy.plugin

Populates the module's input values, when the command is invoked from an ImageJ 1.x macro.

MacroPreprocessor() - Constructor for class net.imagej.legacy.plugin.MacroPreprocessor

MacroRecorderExcludedInputs - Class in net.imagej.legacy.plugin

Globally accessible data structure that stores, for each Module instance, the set of "pre-resolved" module inputs.

MacroRecorderPostprocessor - Class in net.imagej.legacy.plugin

Registers the module's final input values with ImageJ 1.x's macro recorder.

MacroRecorderPostprocessor() - Constructor for class net.imagej.legacy.plugin.MacroRecorderPostprocessor

MacroRecorderPreprocessor - Class in net.imagej.legacy.plugin

Remembers which inputs are resolved extremely early in the preprocessing chain.

MacroRecorderPreprocessor() - Constructor for class net.imagej.legacy.plugin.MacroRecorderPreprocessor

Macros - Class in net.imagej.legacy

Static utility methods for working with ImageJ 1.x macros via its call function.

MAGENTA - Static variable in class net.imagej.display.ColorTables

magnitude(IterableInterval<T>, int, int) - Method in class net.imagej.ops.features.zernike.ZernikeNamespace

magnitude(O, IterableInterval<T>, int, int) - Method in class net.imagej.ops.features.zernike.ZernikeNamespace

main(String...) - Method in class imagej.patcher.LegacyEnvironment

Deprecated.

Runs ImageJ.main(args) in the legacy environment.

main(String[]) - Static method in class net.imagej.launcher.ClassLauncher

Patch ij.jar and launch the class given as first argument passing on the remaining arguments

main(String[]) - Static method in class net.imagej.launcher.JarLauncher

main(String...) - Static method in class net.imagej.legacy.plugin.LegacyAutoImporter

Main - Class in net.imagej

Launches ImageJ.

main(String...) - Static method in class net.imagej.Main

main(String...) - Static method in class net.imagej.omero.ScriptGenerator

Entry point for generating OMERO script stubs.

main(String...) - Static method in class net.imagej.omero.ScriptRunner

Simple entry point for executing ImageJ modules as scripts.

main(String...) - Static method in class net.imagej.ops.filter.fftSize.NextSmoothNumber

Main - Class in net.imagej.ops

Launches a console-based, Ops-driven expression evaluator.

main(String[]) - Static method in class net.imagej.ops.Main

main(String...) - Static method in class net.imagej.patcher.JavaAgent

Writes out a minimal java agent .jar file.

main(String...) - Method in class net.imagej.patcher.LegacyEnvironment

Runs ImageJ.main(args) in the legacy environment.

main(String[]) - Static method in class net.imagej.patcher.MemoryProfiler

main(String...) - Static method in class net.imagej.patcher.PerformanceProfiler

The main method.

Main - Class in net.imagej.server

Main class for imagej-server.

Main() - Constructor for class net.imagej.server.Main

main(String[]) - Static method in class net.imagej.server.Main

main(String[]) - Static method in class net.imagej.tensorflow.demo.LabelImage

main(String...) - Static method in class net.imagej.tensorflow.ui.TensorFlowLibraryManagementCommand

main(String[]) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions

main(String[]) - Static method in class net.imagej.ui.swing.SwingColorBar

main(String[]) - Static method in class net.imagej.ui.swing.updater.DiffView

A main method for testing.

main(String[]) - Static method in class net.imagej.ui.swing.updater.ImageJUpdater

main(String[]) - Static method in class net.imagej.ui.swing.updater.ProgressDialog

main(String...) - Static method in class net.imagej.updater.CommandLine

main(File, int, String...) - Static method in class net.imagej.updater.CommandLine

main(File, int, Progress, String...) - Static method in class net.imagej.updater.CommandLine

main(String...) - Static method in class net.imagej.updater.DllFile

main(String[]) - Static method in class net.imagej.util.MirrorWebsite

MAIN_URL - Static variable in class net.imagej.updater.util.UpdaterUtil

mainElongation(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

mainElongation(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

mainElongation(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

mainElongation(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

majorAxis(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

majorAxis(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

MakeBinary<T extends RealType<T>> - Class in net.imagej.plugins.commands.binary

Changes an existing Dataset to a binary mask Dataset using the default thresholding method.

MakeBinary() - Constructor for class net.imagej.plugins.commands.binary.MakeBinary

makeCompressionTypes() - Method in class net.imagej.omero.OMEROFormat.Writer

makeFilePrivate(String) - Method in class net.imagej.legacy.SingleInstance

makeSuffixArray() - Method in class net.imagej.omero.OMEROFormat

managedFiles() - Method in class net.imagej.updater.FilesCollection

MandelbrotSetImage - Class in net.imagej.plugins.commands.debug

Makes a color image that represents a Mandelbrot set using specified parameters.

MandelbrotSetImage() - Constructor for class net.imagej.plugins.commands.debug.MandelbrotSetImage

map() - Method in class net.imagej.display.SourceOptimizedCompositeXYProjector

map(Iterable<O>, NullaryComputerOp<O>) - Static method in class net.imagej.ops.map.Maps

map(IterableInterval<O>, NullaryComputerOp<O>, long, long, long) - Static method in class net.imagej.ops.map.Maps

map(IterableInterval, IterableInterval<O>, UnaryComputerOp<I, O>) - Static method in class net.imagej.ops.map.Maps

map(IterableInterval, RandomAccessibleInterval<O>, UnaryComputerOp<I, O>) - Static method in class net.imagej.ops.map.Maps

map(RandomAccessibleInterval, IterableInterval<O>, UnaryComputerOp<I, O>) - Static method in class net.imagej.ops.map.Maps

map(IterableInterval<I1>, IterableInterval<I2>, IterableInterval<O>, BinaryComputerOp<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps

map(IterableInterval<I1>, IterableInterval<I2>, RandomAccessibleInterval<O>, BinaryComputerOp<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps

map(IterableInterval<I1>, RandomAccessibleInterval<I2>, IterableInterval<O>, BinaryComputerOp<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps

map(RandomAccessibleInterval<I1>, IterableInterval<I2>, IterableInterval<O>, BinaryComputerOp<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps

map(IterableInterval<I1>, RandomAccessibleInterval<I2>, RandomAccessibleInterval<O>, BinaryComputerOp<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps

map(RandomAccessibleInterval<I1>, IterableInterval<I2>, RandomAccessibleInterval<O>, BinaryComputerOp<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps

map(RandomAccessibleInterval<I1>, RandomAccessibleInterval<I2>, IterableInterval<O>, BinaryComputerOp<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps

map(IterableInterval, IterableInterval<O>, UnaryComputerOp<I, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps

map(IterableInterval, RandomAccessibleInterval<O>, UnaryComputerOp<I, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps

map(RandomAccessibleInterval, IterableInterval<O>, UnaryComputerOp<I, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps

map(IterableInterval<I1>, IterableInterval<I2>, IterableInterval<O>, BinaryComputerOp<I1, I2, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps

map(IterableInterval<I1>, IterableInterval<I2>, RandomAccessibleInterval<O>, BinaryComputerOp<I1, I2, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps

map(IterableInterval<I1>, RandomAccessibleInterval<I2>, IterableInterval<O>, BinaryComputerOp<I1, I2, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps

map(RandomAccessibleInterval<I1>, IterableInterval<I2>, IterableInterval<O>, BinaryComputerOp<I1, I2, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps

map(IterableInterval<I1>, RandomAccessibleInterval<I2>, RandomAccessibleInterval<O>, BinaryComputerOp<I1, I2, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps

map(RandomAccessibleInterval<I1>, IterableInterval<I2>, RandomAccessibleInterval<O>, BinaryComputerOp<I1, I2, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps

map(RandomAccessibleInterval<I1>, RandomAccessibleInterval<I2>, IterableInterval<O>, BinaryComputerOp<I1, I2, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps

map(Iterable<EO>, NullaryComputerOp<EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(IterableInterval<EO>, NullaryComputerOp<EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(IterableInterval<EO>, IterableInterval<EI>, UnaryComputerOp<EI, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(RandomAccessibleInterval<EO>, IterableInterval<EI>, UnaryComputerOp<EI, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(IterableInterval<EO>, RandomAccessibleInterval<EI>, UnaryComputerOp<EI, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(IterableInterval<EO>, IterableInterval<EI1>, IterableInterval<EI2>, BinaryComputerOp<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(RandomAccessibleInterval<EO>, IterableInterval<EI1>, IterableInterval<EI2>, BinaryComputerOp<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(IterableInterval<EO>, IterableInterval<EI1>, RandomAccessibleInterval<EI2>, BinaryComputerOp<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(RandomAccessibleInterval<EO>, IterableInterval<EI1>, RandomAccessibleInterval<EI2>, BinaryComputerOp<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(IterableInterval<EO>, RandomAccessibleInterval<EI1>, IterableInterval<EI2>, BinaryComputerOp<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(RandomAccessibleInterval<EO>, RandomAccessibleInterval<EI1>, IterableInterval<EI2>, BinaryComputerOp<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(IterableInterval<EO>, RandomAccessibleInterval<EI1>, RandomAccessibleInterval<EI2>, BinaryComputerOp<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(RandomAccessibleInterval<EI>, UnaryComputerOp<EI, EO>, EO) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(RandomAccessible<EI>, UnaryComputerOp<EI, EO>, EO) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(IterableInterval<EI>, UnaryComputerOp<EI, EO>, EO) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(IterableInterval<EO>, UnaryInplaceOp<EI, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(Iterable<EO>, UnaryInplaceOp<EI, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(IterableInterval<EO>, RandomAccessibleInterval<EI>, Shape, UnaryComputerOp<Iterable<EI>, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(IterableInterval<EO>, RandomAccessibleInterval<EI>, Shape, CenterAwareComputerOp<EI, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(Iterable<EO>, Iterable<EI>, UnaryComputerOp<EI, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(IterableInterval<EO>, IterableInterval<EO>, BinaryInplaceOp<EI, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(IterableInterval<EO>, IterableInterval<EI2>, BinaryInplace1Op<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(IterableInterval<EO>, RandomAccessibleInterval<EI2>, BinaryInplace1Op<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

map(RandomAccessibleInterval<EO>, IterableInterval<EI2>, BinaryInplace1Op<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment

Executes the "map" operation on the given arguments.

MapBinaryComputer<EI1,EI2,EO,OP extends BinaryComputerOp<EI1,EI2,EO>> - Interface in net.imagej.ops.map

Typed interface for "map" BinaryComputerOps.

MapBinaryComputers - Class in net.imagej.ops.map

Auto generated MapBinaryComputers.

MapBinaryComputers.IIAndIIToII<EI1,EI2,EO> - Class in net.imagej.ops.map

MapBinaryComputer from IterableInterval and IterableInterval to IterableInterval.

MapBinaryComputers.IIAndIIToIIParallel<EI1,EI2,EO> - Class in net.imagej.ops.map

Parallelized MapBinaryComputer from IterableInterval and IterableInterval to IterableInterval.

MapBinaryComputers.IIAndIIToRAI<EI1,EI2,EO> - Class in net.imagej.ops.map

MapBinaryComputer from IterableInterval and IterableInterval to RandomAccessibleInterval.

MapBinaryComputers.IIAndIIToRAIParallel<EI1,EI2,EO> - Class in net.imagej.ops.map

Parallelized MapBinaryComputer from IterableInterval and IterableInterval to RandomAccessibleInterval.

MapBinaryComputers.IIAndRAIToII<EI1,EI2,EO> - Class in net.imagej.ops.map

MapBinaryComputer from IterableInterval and RandomAccessibleInterval to IterableInterval.

MapBinaryComputers.IIAndRAIToIIParallel<EI1,EI2,EO> - Class in net.imagej.ops.map

Parallelized MapBinaryComputer from IterableInterval and RandomAccessibleInterval to IterableInterval.

MapBinaryComputers.IIAndRAIToRAI<EI1,EI2,EO> - Class in net.imagej.ops.map

MapBinaryComputer from IterableInterval and RandomAccessibleInterval to RandomAccessibleInterval.

MapBinaryComputers.IIAndRAIToRAIParallel<EI1,EI2,EO> - Class in net.imagej.ops.map

Parallelized MapBinaryComputer from IterableInterval and RandomAccessibleInterval to RandomAccessibleInterval.

MapBinaryComputers.RAIAndIIToII<EI1,EI2,EO> - Class in net.imagej.ops.map

MapBinaryComputer from RandomAccessibleInterval and IterableInterval to IterableInterval.

MapBinaryComputers.RAIAndIIToIIParallel<EI1,EI2,EO> - Class in net.imagej.ops.map

Parallelized MapBinaryComputer from RandomAccessibleInterval and IterableInterval to IterableInterval.

MapBinaryComputers.RAIAndIIToRAI<EI1,EI2,EO> - Class in net.imagej.ops.map

MapBinaryComputer from RandomAccessibleInterval and IterableInterval to RandomAccessibleInterval.

MapBinaryComputers.RAIAndIIToRAIParallel<EI1,EI2,EO> - Class in net.imagej.ops.map

Parallelized MapBinaryComputer from RandomAccessibleInterval and IterableInterval to RandomAccessibleInterval.

MapBinaryComputers.RAIAndRAIToII<EI1,EI2,EO> - Class in net.imagej.ops.map

MapBinaryComputer from RandomAccessibleInterval and RandomAccessibleInterval to IterableInterval.

MapBinaryComputers.RAIAndRAIToIIParallel<EI1,EI2,EO> - Class in net.imagej.ops.map

Parallelized MapBinaryComputer from RandomAccessibleInterval and RandomAccessibleInterval to IterableInterval.

MapBinaryInplace<EI,EO extends EI,OP extends BinaryInplaceOp<EI,EO>> - Interface in net.imagej.ops.map

Typed interface for "map" BinaryInplaceOps.

MapBinaryInplace1<EI1,EI2,EO extends EI1,OP extends BinaryInplace1Op<EI1,EI2,EO>> - Interface in net.imagej.ops.map

Typed interface for "map" BinaryInplace1Ops.

MapBinaryInplace1s - Class in net.imagej.ops.map

Auto generated MapBinaryInplace1s.

MapBinaryInplace1s.IIAndII<EA,EI> - Class in net.imagej.ops.map

MapBinaryInplace1 of IterableInterval with additional input of IterableInterval.

MapBinaryInplace1s.IIAndIIParallel<EA,EI> - Class in net.imagej.ops.map

Parallelized MapBinaryInplace1 of IterableInterval with additional input of IterableInterval.

MapBinaryInplace1s.IIAndRAI<EA,EI> - Class in net.imagej.ops.map

MapBinaryInplace1 of IterableInterval with additional input of RandomAccessibleInterval.

MapBinaryInplace1s.IIAndRAIParallel<EA,EI> - Class in net.imagej.ops.map

Parallelized MapBinaryInplace1 of IterableInterval with additional input of RandomAccessibleInterval.

MapBinaryInplace1s.RAIAndII<EA,EI> - Class in net.imagej.ops.map

MapBinaryInplace1 of RandomAccessibleInterval with additional input of IterableInterval.

MapBinaryInplace1s.RAIAndIIParallel<EA,EI> - Class in net.imagej.ops.map

Parallelized MapBinaryInplace1 of RandomAccessibleInterval with additional input of IterableInterval.

MapIIAndIIInplace<EA> - Class in net.imagej.ops.map

MapBinaryInplace over 2 IterableIntervals

MapIIAndIIInplace() - Constructor for class net.imagej.ops.map.MapIIAndIIInplace

MapIIAndIIInplaceParallel<EA> - Class in net.imagej.ops.map

MapBinaryInplace over 2 IterableIntervals

MapIIAndIIInplaceParallel() - Constructor for class net.imagej.ops.map.MapIIAndIIInplaceParallel

MapIIInplaceParallel<A> - Class in net.imagej.ops.map

Parallelized MapInplace over an IterableInterval.

MapIIInplaceParallel() - Constructor for class net.imagej.ops.map.MapIIInplaceParallel

MapInplace<EI,EO extends EI,OP extends UnaryInplaceOp<EI,EO>> - Interface in net.imagej.ops.map

Typed interface for "map" UnaryInplaceOps.

MapIterableInplace<A> - Class in net.imagej.ops.map

A MapInplace over an Iterable.

MapIterableInplace() - Constructor for class net.imagej.ops.map.MapIterableInplace

MapIterableToIterable<EI,EO> - Class in net.imagej.ops.map

MapUnaryComputer from Iterable input to Iterable output.

MapIterableToIterable() - Constructor for class net.imagej.ops.map.MapIterableToIterable

MapNeighborhood<EI,EO,PI,PO,OP extends Op> - Interface in net.imagej.ops.map.neighborhood

Typed interface for "map" ops that work with neighborhoods.

MapNeighborhoodWithCenter<I,O> - Class in net.imagej.ops.map.neighborhood

Evaluates a CenterAwareComputerOp for each Neighborhood on the input RandomAccessibleInterval and sets the value of the corresponding pixel on the output IterableInterval.

MapNeighborhoodWithCenter() - Constructor for class net.imagej.ops.map.neighborhood.MapNeighborhoodWithCenter

MapNullaryComputer<EO,OP extends NullaryComputerOp<EO>> - Interface in net.imagej.ops.map

Typed interface for "map" NullaryComputerOps.

MapNullaryII<O> - Class in net.imagej.ops.map

A paralleled version of MapNullaryComputer over an IterableInterval.

MapNullaryII() - Constructor for class net.imagej.ops.map.MapNullaryII

MapNullaryIterable<O> - Class in net.imagej.ops.map

A MapNullaryComputer over an Iterable.

MapNullaryIterable() - Constructor for class net.imagej.ops.map.MapNullaryIterable

MapOp<OP extends Op> - Interface in net.imagej.ops.map

Typed interface for "map" ops.

Maps - Class in net.imagej.ops.map

Utility class for MapOps.

MapUnaryComputer<EI,EO,OP extends UnaryComputerOp<EI,EO>> - Interface in net.imagej.ops.map

Typed interface for "map" UnaryComputerOps.

MapUnaryComputers - Class in net.imagej.ops.map

Auto generated MapUnaryComputers.

MapUnaryComputers.IIToII<EI,EO> - Class in net.imagej.ops.map

MapUnaryComputer from IterableInterval to IterableInterval.

MapUnaryComputers.IIToIIParallel<EI,EO> - Class in net.imagej.ops.map

Parallelized MapUnaryComputer from IterableInterval to IterableInterval.

MapUnaryComputers.IIToRAI<EI,EO> - Class in net.imagej.ops.map

MapUnaryComputer from IterableInterval to RandomAccessibleInterval.

MapUnaryComputers.IIToRAIParallel<EI,EO> - Class in net.imagej.ops.map

Parallelized MapUnaryComputer from IterableInterval to RandomAccessibleInterval.

MapUnaryComputers.RAIToII<EI,EO> - Class in net.imagej.ops.map

MapUnaryComputer from RandomAccessibleInterval to IterableInterval.

MapUnaryComputers.RAIToIIParallel<EI,EO> - Class in net.imagej.ops.map

Parallelized MapUnaryComputer from RandomAccessibleInterval to IterableInterval.

MapView<EI,EO,PI,PO> - Interface in net.imagej.ops.map

A MapUnaryComputer UnaryFunctionOp which converts entries on demand by wrapping in a thin "view" data structure.

MapViewIIToII<EI,EO extends Type<EO>> - Class in net.imagej.ops.map

MapView which converts an IterableInterval between element types.

MapViewIIToII() - Constructor for class net.imagej.ops.map.MapViewIIToII

MapViewRAIToRAI<EI,EO extends Type<EO>> - Class in net.imagej.ops.map

MapView which converts an RandomAccessibleInterval between element types.

MapViewRAIToRAI() - Constructor for class net.imagej.ops.map.MapViewRAIToRAI

MapViewRandomAccessToRandomAccess<EI,EO extends Type<EO>> - Class in net.imagej.ops.map

MapView which converts a RandomAccessible between element types.

MapViewRandomAccessToRandomAccess() - Constructor for class net.imagej.ops.map.MapViewRandomAccessToRandomAccess

marchingCubes(RandomAccessibleInterval<T>) - Static method in class net.imagej.mesh.Meshes

Creates mesh e.g.

marchingCubes(RandomAccessibleInterval<T>, double) - Static method in class net.imagej.mesh.Meshes

Creates mesh e.g.

marchingCubes(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.geom.GeomNamespace

marchingCubes(RandomAccessibleInterval<T>, double) - Method in class net.imagej.ops.geom.GeomNamespace

marchingCubes(RandomAccessibleInterval<T>, double, VertexInterpolator) - Method in class net.imagej.ops.geom.GeomNamespace

markForUpdate(boolean) - Method in class net.imagej.updater.FilesCollection

markRemoved() - Method in class net.imagej.updater.FileObject

Deprecated.

markRemoved(FilesCollection) - Method in class net.imagej.updater.FileObject

markUploaded() - Method in class net.imagej.updater.FileObject

MaskAsRandomAccessibleUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.MaskAsRandomAccessibleUnwrapper

maskColor - Variable in class net.imagej.plugins.commands.binary.AbstractBinaryCommand

maskColor() - Method in class net.imagej.plugins.commands.binary.Binarize

Gets the color of the mask pixels.

MaskConversionUtil - Class in net.imagej.roi

Utility class for working with MaskPredicates.

MaskIntervalAsRandomAccessibleIntervalUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.MaskIntervalAsRandomAccessibleIntervalUnwrapper

MaskIntervalToMaskData - Class in net.imagej.omero.roi.mask

Converts a MaskInterval to an OMERO MaskData.

MaskIntervalToMaskData() - Constructor for class net.imagej.omero.roi.mask.MaskIntervalToMaskData

MaskIntervalToRAIConverter - Class in net.imagej.roi

Converts a MaskInterval to RandomAccessibleInterval<BoolType>.

MaskIntervalToRAIConverter() - Constructor for class net.imagej.roi.MaskIntervalToRAIConverter

maskPixels - Variable in class net.imagej.plugins.commands.binary.AbstractBinaryCommand

maskPixels() - Method in class net.imagej.plugins.commands.binary.Binarize

Gets which pixels are considered part of the mask.

MaskPredicateToOverlay - Class in net.imagej.omero.legacy.convert

Converts a MaskPredicate to a Overlay.

MaskPredicateToOverlay() - Constructor for class net.imagej.omero.legacy.convert.MaskPredicateToOverlay

MaskPredicateToROITree - Class in net.imagej.omero.legacy.convert

Converts a MaskPredicate to a ROITree.

MaskPredicateToROITree() - Constructor for class net.imagej.omero.legacy.convert.MaskPredicateToROITree

MaskPredicateUnwrappers - Class in net.imagej.legacy.convert.roi

Converters which unwrap wrapped MaskPredicates.

MaskPredicateUnwrappers.WrapperToWritableBoxConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped WritableBoxs.

MaskPredicateUnwrappers.WrapperToWritableEllipsoid - Class in net.imagej.legacy.convert.roi

Unwraps wrapped WritableEllipsoids.

MaskPredicateUnwrappers.WrapperToWritableLine - Class in net.imagej.legacy.convert.roi

Unwraps wrapped WritableLines.

MaskPredicateUnwrappers.WrapperToWritablePointMask - Class in net.imagej.legacy.convert.roi

Unwraps wrapped WritablePointMasks.

MaskPredicateUnwrappers.WrapperToWritablePolygon2D - Class in net.imagej.legacy.convert.roi

Unwraps wrapped WritablePolygon2Ds.

MaskPredicateUnwrappers.WrapperToWritablePolyline - Class in net.imagej.legacy.convert.roi

Unwraps wrapped WritablePolylines.

MaskPredicateUnwrappers.WrapperToWritableRealPointCollection - Class in net.imagej.legacy.convert.roi

Unwraps wrapped WritableRealPointCollections.

MaskPredicateWrapper<M extends MaskPredicate<?>> - Interface in net.imagej.legacy.convert.roi

ImageJ 1.x Rois with associated MaskPredicate.

MaskToRAConverter - Class in net.imagej.roi

Converts a Mask to RandomAccessible<BoolType>.

MaskToRAConverter() - Constructor for class net.imagej.roi.MaskToRAConverter

match(OpCandidate) - Method in class net.imagej.ops.DefaultOpMatchingService

match(OpCandidate) - Method in interface net.imagej.ops.OpMatchingService

Attempts to match the given arguments to the Op described by the specified ModuleInfo.

matcher() - Method in class net.imagej.ops.CustomOpEnvironment

matcher() - Method in class net.imagej.ops.DefaultOpService

matcher() - Method in interface net.imagej.ops.OpEnvironment

matches(FileObject) - Method in class net.imagej.updater.CommandLine.FileFilter

matches(FileObject) - Method in interface net.imagej.updater.FilesCollection.Filter

matchInfo(List<OpCandidate>, List<OpCandidate>) - Static method in class net.imagej.ops.OpUtils

Gets a string with an analysis of a particular match request failure.

math() - Method in interface net.imagej.ops.OpEnvironment

Gateway into ops of the "math" namespace.

MathCommand,O extends ComplexType<O>> - Class in net.imagej.plugins.commands.assign

Base class for previewable math commands.

MathCommand(O) - Constructor for class net.imagej.plugins.commands.assign.MathCommand

MathNamespace - Class in net.imagej.ops.math

The math namespace contains arithmetic operations.

MathNamespace() - Constructor for class net.imagej.ops.math.MathNamespace

MATLABDatasetConverter - Class in net.imagej.matlab

Converter implementation for converting Dataset to MatlabNumericArray.

MATLABDatasetConverter() - Constructor for class net.imagej.matlab.MATLABDatasetConverter

MATLABNumericArrayPreprocessor - Class in net.imagej.matlab

PreprocessorPlugin implementation that converts the active Datasets to a MatlabNumericArray.

MATLABNumericArrayPreprocessor() - Constructor for class net.imagej.matlab.MATLABNumericArrayPreprocessor

MatrixOrientation - Interface in net.imagej.ops.image.cooccurrenceMatrix

Simple interface for enums representing the orientation of a Ops.Image.CooccurrenceMatrix.

MatrixOrientation2D - Enum in net.imagej.ops.image.cooccurrenceMatrix

Orientation of a CooccurrenceMatrix2D

MatrixOrientation3D - Enum in net.imagej.ops.image.cooccurrenceMatrix

Orientation of a CooccurrenceMatrix3D

max(int) - Method in class net.imagej.DefaultDataset

max(long[]) - Method in class net.imagej.DefaultDataset

max(Positionable) - Method in class net.imagej.DefaultDataset

max(int) - Method in class net.imagej.display.DefaultImageDisplay

max(long[]) - Method in class net.imagej.display.DefaultImageDisplay

max(Positionable) - Method in class net.imagej.display.DefaultImageDisplay

max(int) - Method in class net.imagej.ImgPlus

max(long[]) - Method in class net.imagej.ImgPlus

max(Positionable) - Method in class net.imagej.ImgPlus

max() - Method in class net.imagej.interval.CombinedRealInterval.MinMax

max(int) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

max(long[]) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

max(Positionable) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

max(IterableInterval<T>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "max" filter operation on the given arguments.

max(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, T>) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "max" filter operation on the given arguments.

max(double, double) - Method in class net.imagej.ops.math.MathNamespace

max(float, float) - Method in class net.imagej.ops.math.MathNamespace

max(int, int) - Method in class net.imagej.ops.math.MathNamespace

max(long, long) - Method in class net.imagej.ops.math.MathNamespace

max(O, I, double) - Method in class net.imagej.ops.math.MathNamespace

max(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

max(T, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

max() - Method in class net.imagej.plugins.commands.debug.MeasurementDemo

max() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo

MAX - Static variable in class net.imagej.plugins.commands.io.NewImage

max(int) - Method in class net.imagej.table.ResultsImg

max(long[]) - Method in class net.imagej.table.ResultsImg

max(Positionable) - Method in class net.imagej.table.ResultsImg

MAX_DIMS - Static variable in class net.imagej.ops.filter.bilateral.DefaultBilateral

MAX_DIMS - Static variable in class net.imagej.ops.filter.vesselness.DefaultFrangi

MAX_FILES_SHOWN - Static variable in interface net.imagej.display.WindowService

MaxConstant() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.MaxConstant

MaxDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign

Fills an output Dataset by clamping an input Dataset such that no values are greater than a user defined constant value.

MaxDataValues() - Constructor for class net.imagej.plugins.commands.assign.MaxDataValues

MaxEntropy() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.MaxEntropy

maxEntropy(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

maxEntropy(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

maxEntropy(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

maxEntropy(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

maxEntropy(IterableInterval, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

maxEntropy(IterableInterval, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

MaxFilterOp<I,O> - Interface in net.imagej.ops.filter.max

A typed "max" filter.

maximumFeret(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

maximumFeretsAngle(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

maximumFeretsAngle(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

maximumFeretsDiameter(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

maximumFeretsDiameter(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

maximumVesselness - Variable in class net.imagej.ops.filter.vesselness.DefaultFrangi

MaxLikelihood() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.MaxLikelihood

maxLikelihood(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

maxLikelihood(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

maxLikelihood(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

maxLikelihood(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

maxLikelihood(IterableInterval, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

maxLikelihood(IterableInterval, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

maxProbability(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

maxProbability(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

maxTKendallTau(RandomAccessibleInterval<T>, RandomAccessibleInterval) - Method in class net.imagej.ops.coloc.ColocNamespace

maxTKendallTau(RandomAccessibleInterval<T>, RandomAccessibleInterval, long) - Method in class net.imagej.ops.coloc.ColocNamespace

maxValue(T) - Static method in class net.imagej.ops.image.invert.InvertIIInteger

maybeAddSeparator() - Method in class net.imagej.ui.swing.updater.ConflictDialog

maybeSwitchTool(MouseEvent) - Method in class net.imagej.ui.swing.overlay.ToolDelegator

mean(IterableInterval<O>, RandomAccessibleInterval, Shape) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "mean" filter operation on the given arguments.

mean(IterableInterval<O>, RandomAccessibleInterval, Shape, OutOfBoundsFactory<I, RandomAccessibleInterval>) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "mean" filter operation on the given arguments.

mean(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

mean(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

Mean() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Mean

mean(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

mean(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

mean(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

mean(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

mean() - Method in class net.imagej.plugins.commands.debug.MeasurementDemo

mean() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo

MeanFilterOp<I,O> - Interface in net.imagej.ops.filter.mean

A typed "mean" filter.

measure(ImagePlus) - Method in class net.imagej.omero.legacy.LazyOverlay

MeasurementDemo - Class in net.imagej.plugins.commands.debug

Shows how to use the MeasurementService.

MeasurementDemo() - Constructor for class net.imagej.plugins.commands.debug.MeasurementDemo

median(IterableInterval<T>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "median" filter operation on the given arguments.

median(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, T>) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "median" filter operation on the given arguments.

median(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

median(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

median() - Method in class net.imagej.plugins.commands.debug.MeasurementDemo

median() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo

medianElongation(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

medianElongation(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

MedianFilterOp<I,O> - Interface in net.imagej.ops.filter.median

A typed "median" filter.

MediaWikiClient - Class in net.imagej.util

A minimal MediaWiki API client for interacting with the ImageJ Wiki.

MediaWikiClient() - Constructor for class net.imagej.util.MediaWikiClient

MediaWikiClient(String) - Constructor for class net.imagej.util.MediaWikiClient

MemoryProfiler - Class in net.imagej.patcher

A very simple memory profiler.

MemoryProfiler() - Constructor for class net.imagej.patcher.MemoryProfiler

MemoryProfiler(String) - Constructor for class net.imagej.patcher.MemoryProfiler

MemoryProfiler(Collection<String>) - Constructor for class net.imagej.patcher.MemoryProfiler

MenuProvider - Class in net.imagej.server.utilities

Plugin that provides ImageJ2 menu structure, making use of SciJava MenuService.

MenuProvider() - Constructor for class net.imagej.server.utilities.MenuProvider

merge(ImgLabeling<L, I>, ImgLabeling<L, I>) - Method in class net.imagej.ops.labeling.LabelingNamespace

merge(ImgLabeling<L, I>, ImgLabeling<L, I>, ImgLabeling<L, I>) - Method in class net.imagej.ops.labeling.LabelingNamespace

merge(ImgLabeling<L, I>, ImgLabeling<L, I>, ImgLabeling<L, I>, RandomAccessibleInterval) - Method in class net.imagej.ops.labeling.LabelingNamespace

merge(FileObject) - Method in class net.imagej.updater.FileObject

MergeLabeling<L,I extends IntegerType,B extends BooleanType> - Class in net.imagej.ops.labeling

Merges the labels of two ImgLabeling within a defined mask (if provided).

MergeLabeling() - Constructor for class net.imagej.ops.labeling.MergeLabeling

MergeSort - Class in net.imagej.ops.coloc

Helper class for MaxKendallTau op.

MergeSort(int[], IntComparator) - Constructor for class net.imagej.ops.coloc.MergeSort

Mesh - Interface in net.imagej.mesh

3D mesh data structure consisting of triangles and their vertices.

mesh() - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles

mesh() - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

mesh() - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles

mesh() - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices

mesh() - Method in class net.imagej.mesh.nio.BufferMesh.Triangles

mesh() - Method in class net.imagej.mesh.nio.BufferMesh.Vertices

mesh() - Method in interface net.imagej.mesh.Triangle

The mesh to which the triangle belongs.

mesh() - Method in interface net.imagej.mesh.Triangles

The mesh to which the collection of triangles belongs.

mesh() - Method in interface net.imagej.mesh.Vertex

The mesh to which the vertex belongs.

mesh() - Method in interface net.imagej.mesh.Vertices

The mesh to which the collection of vertices belongs.

Meshes - Class in net.imagej.mesh

Utility methods for working with Mesh objects.

Meshes() - Constructor for class net.imagej.mesh.Meshes

MeshIOPlugin - Interface in net.imagej.mesh.io

A plugin which reads and/or writes Mesh objects.

MESSAGE - Static variable in class net.imagej.app.QuitProgram

messageLogged(LogMessage) - Method in class net.imagej.updater.util.StderrLogService

Deprecated.

Metadata() - Constructor for class net.imagej.omero.OMEROFormat.Metadata

metadataChanged - Variable in class net.imagej.updater.FileObject

MetadataHarmonizer - Class in net.imagej.legacy.translate

Synchronizes metadata bidirectionally between a Dataset and an ImagePlus.

MetadataHarmonizer() - Constructor for class net.imagej.legacy.translate.MetadataHarmonizer

MetadataUtil - Class in net.imagej.ops

Utility class that allows to copy Metadata.

Method(int) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer.Method

methods(Class<?>, String) - Method in class net.imagej.notebook.DefaultNotebookService

methods(Object) - Method in interface net.imagej.notebook.NotebookService

Outputs a table of public methods for the given object.

methods(Object, String) - Method in interface net.imagej.notebook.NotebookService

Outputs a table of public methods for the given object.

methods(Class<?>) - Method in interface net.imagej.notebook.NotebookService

Outputs a table of public methods for the given class.

methods(Class<?>, String) - Method in interface net.imagej.notebook.NotebookService

Outputs a table of public methods for the given class.

midpoint() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo

MIMEConverter<I,O extends MIMEObject> - Class in net.imagej.notebook.mime

Base class for plugins that convert things to MIMEObjects.

MIMEConverter() - Constructor for class net.imagej.notebook.mime.MIMEConverter

MIMEObject - Interface in net.imagej.notebook.mime

An object that knows how to encode itself as some sort of MIME type.

mimeType() - Method in interface net.imagej.notebook.mime.HTMLObject

mimeType() - Method in interface net.imagej.notebook.mime.MIMEObject

MIME type of the encoded object.

mimeType() - Method in interface net.imagej.notebook.mime.PNGObject

min(int) - Method in class net.imagej.DefaultDataset

min(long[]) - Method in class net.imagej.DefaultDataset

min(Positionable) - Method in class net.imagej.DefaultDataset

min(int) - Method in class net.imagej.display.DefaultImageDisplay

min(long[]) - Method in class net.imagej.display.DefaultImageDisplay

min(Positionable) - Method in class net.imagej.display.DefaultImageDisplay

min(int) - Method in class net.imagej.ImgPlus

min(long[]) - Method in class net.imagej.ImgPlus

min(Positionable) - Method in class net.imagej.ImgPlus

min() - Method in class net.imagej.interval.CombinedRealInterval.MinMax

min(int) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

min(long[]) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

min(Positionable) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

min(IterableInterval<T>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "min" filter operation on the given arguments.

min(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, T>) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "min" filter operation on the given arguments.

min(double, double) - Method in class net.imagej.ops.math.MathNamespace

min(float, float) - Method in class net.imagej.ops.math.MathNamespace

min(int, int) - Method in class net.imagej.ops.math.MathNamespace

min(long, long) - Method in class net.imagej.ops.math.MathNamespace

min(O, I, double) - Method in class net.imagej.ops.math.MathNamespace

min(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

min(T, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

min() - Method in class net.imagej.plugins.commands.debug.MeasurementDemo

min() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo

MIN - Static variable in class net.imagej.plugins.commands.io.NewImage

min(int) - Method in class net.imagej.table.ResultsImg

min(long[]) - Method in class net.imagej.table.ResultsImg

min(Positionable) - Method in class net.imagej.table.ResultsImg

MIN_DATA - Static variable in class net.imagej.ops.stats.regression.leastSquares.Quadric

Minimum number of points in the input collection needed to fit a quadric equation.

MIN_DIMS - Static variable in class net.imagej.ops.filter.bilateral.DefaultBilateral

MIN_DIMS - Static variable in class net.imagej.ops.filter.vesselness.DefaultFrangi

MinConstant() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.MinConstant

MinDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign

Fills an output Dataset by clamping an input Dataset such that no values are less than a user defined constant value.

MinDataValues() - Constructor for class net.imagej.plugins.commands.assign.MinDataValues

MinError() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.MinError

minError(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

minError(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

minError(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

minError(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

minError(IterableInterval, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

minError(IterableInterval, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

MinFilterOp<T,V> - Interface in net.imagej.ops.filter.min

A typed "min" filter.

Minimum() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Minimum

minimum(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

minimum(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

minimum(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

minimum(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

minimum(IterableInterval, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

minimum(IterableInterval, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

minimumFeret(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

minimumFeretsAngle(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

minimumFeretsAngle(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

minimumFeretsDiameter(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

minimumFeretsDiameter(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

minimumVesselness - Variable in class net.imagej.ops.filter.vesselness.DefaultFrangi

MinMax() - Constructor for class net.imagej.interval.CombinedRealInterval.MinMax

minMax(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

minMaxChanged() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast

Called when min or max changes.

MinMaxMethod<T extends Type<T> & Comparable<T>> - Interface in net.imagej.minmax

The MinMaxMethod is used to find the minimum and maximum values of an interval.

minorAxis(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

minorAxis(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

minShowDelay - Variable in class net.imagej.updater.util.StderrProgress

minus(Predicate<? super RealLocalizable>) - Method in class net.imagej.omero.legacy.text.OMEROText

minus(Predicate<? super RealLocalizable>) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper

minValue(T) - Static method in class net.imagej.ops.image.invert.InvertII

minValue(T) - Static method in class net.imagej.ops.image.invert.InvertIIInteger

mirror(String) - Method in class net.imagej.util.MirrorWebsite

MirrorWebsite - Class in net.imagej.util

This program mirrors a given website.

MirrorWebsite(String, File, int, long) - Constructor for class net.imagej.util.MirrorWebsite

missingSubdirs(ClassLoader, boolean) - Static method in class net.imagej.patcher.EssentialLegacyHooks

Intended for sole use with patches in IJ.

Mixins - Class in net.imagej.server.mixins

Jackson MixIns for some specific types in order to produce better output format.

Mixins.IntegerTypeMixIn<T extends IntegerType<T>> - Class in net.imagej.server.mixins

Mixins.ModuleInfoMixIn - Class in net.imagej.server.mixins

Mixins.ModuleItemMixIn<T> - Class in net.imagej.server.mixins

Mixins.OutOfBoundsFactoryMixIn<T,F> - Class in net.imagej.server.mixins

Mixins.RealTypeMixIn<T extends RealType<T>> - Class in net.imagej.server.mixins

Mixins.ToStringMixIn - Class in net.imagej.server.mixins

Mixins.TypeMixIn - Class in net.imagej.server.mixins

mod(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator

model() - Method in class net.imagej.tensorflow.CachedModelBundle

module(String, Object...) - Method in interface net.imagej.ops.OpEnvironment

Gets the best Op to use for the given operation and arguments, wrapping it as a Module with populated inputs.

module(Class<? extends Op>, Object...) - Method in interface net.imagej.ops.OpEnvironment

Gets the best Op to use for the given operation type and arguments, wrapping it as a Module with populated inputs.

module(Op, Object...) - Method in interface net.imagej.ops.OpEnvironment

Wraps the given Op as a Module, populating its inputs.

ModuleAdapter - Class in net.imagej.omero

Adapts an ImageJ Module (such as a Command) to be usable as an OMERO script, converting information between ImageJ- and OMERO-compatible formats as appropriate.

ModuleAdapter(Context, ModuleInfo, client) - Constructor for class net.imagej.omero.ModuleAdapter

ModuleInfoMixIn() - Constructor for class net.imagej.server.mixins.Mixins.ModuleInfoMixIn

ModuleItemMixIn() - Constructor for class net.imagej.server.mixins.Mixins.ModuleItemMixIn

ModulesResource - Class in net.imagej.server.resources

Server resource that manages module operations.

ModulesResource() - Constructor for class net.imagej.server.resources.ModulesResource

ModulesResource.InitializablePreprocessor - Class in net.imagej.server.resources

ModuleUtils - Class in net.imagej.omero

Utility class for working with ImageJ modules, particularly Identifiable ones.

moment00(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

moment00(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

moment01(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

moment01(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

moment10(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

moment10(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

moment11(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

moment11(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

moment1AboutMean(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

moment1AboutMean(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

moment2AboutMean(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

moment2AboutMean(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

moment3AboutMean(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

moment3AboutMean(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

moment4AboutMean(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

moment4AboutMean(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

Moments() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Moments

moments(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

moments(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

moments(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

moments(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

moments(IterableInterval, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

moments(IterableInterval, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

MorphologicalThinningStrategy - Class in net.imagej.ops.morphology.thin

A Class implementing a standard morphological thinning.

MorphologicalThinningStrategy() - Constructor for class net.imagej.ops.morphology.thin.MorphologicalThinningStrategy

MorphologicalThinningStrategy(boolean) - Constructor for class net.imagej.ops.morphology.thin.MorphologicalThinningStrategy

Create a new morphological thinning strategy.

Morphologies - Class in net.imagej.ops.morphology

Utility class for morphology operations.

morphology() - Method in interface net.imagej.ops.OpEnvironment

Gateway into ops of the "morphology" namespace.

MorphologyNamespace - Class in net.imagej.ops.morphology

The morphology namespace contains morphology operations.

MorphologyNamespace() - Constructor for class net.imagej.ops.morphology.MorphologyNamespace

mosaic(int[], RandomAccessibleInterval<T>...) - Method in class net.imagej.notebook.DefaultNotebookService

mosaic(int[], RandomAccessibleInterval<T>...) - Method in interface net.imagej.notebook.NotebookService

Organizes the given list of images into an N-dimensional mosaic.

mouseClicked(MouseEvent) - Method in class net.imagej.ui.swing.overlay.IJCreationTool

mouseClicked(MouseEvent) - Method in class net.imagej.ui.swing.overlay.ToolDelegator

MouseCursorEvent - Class in net.imagej.display.event

An event indicating a change in the mouse cursor.

MouseCursorEvent(ImageCanvas) - Constructor for class net.imagej.display.event.MouseCursorEvent

mouseDown(Display<?>, int, int) - Method in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter

mouseDown(Display<?>, int, int) - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter

mouseDrag(Display<?>, int, int) - Method in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter

mouseDrag(Display<?>, int, int) - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter

mouseDragged(MouseEvent) - Method in class net.imagej.ui.swing.overlay.IJCreationTool

mouseDragged(MouseEvent) - Method in class net.imagej.ui.swing.overlay.ToolDelegator

mouseEntered(MouseEvent) - Method in class net.imagej.ui.swing.overlay.ToolDelegator

mouseExited(MouseEvent) - Method in class net.imagej.ui.swing.overlay.ToolDelegator

mouseMoved(MouseEvent) - Method in class net.imagej.ui.swing.overlay.ToolDelegator

mousePressed(MouseEvent) - Method in class net.imagej.ui.swing.overlay.IJCreationTool

mousePressed(MouseEvent) - Method in class net.imagej.ui.swing.overlay.ToolDelegator

mouseReleased(MouseEvent) - Method in class net.imagej.ui.swing.overlay.IJCreationTool

mouseReleased(MouseEvent) - Method in class net.imagej.ui.swing.overlay.ToolDelegator

move(int, int) - Method in class net.imagej.display.AbstractDataView

move(long, int) - Method in class net.imagej.display.AbstractDataView

move(Localizable) - Method in class net.imagej.display.AbstractDataView

move(int[]) - Method in class net.imagej.display.AbstractDataView

move(long[]) - Method in class net.imagej.display.AbstractDataView

move(int, int) - Method in class net.imagej.display.DefaultImageDisplay

move(long, int) - Method in class net.imagej.display.DefaultImageDisplay

move(Localizable) - Method in class net.imagej.display.DefaultImageDisplay

move(int[]) - Method in class net.imagej.display.DefaultImageDisplay

move(long[]) - Method in class net.imagej.display.DefaultImageDisplay

move(float, int) - Method in interface net.imagej.omero.roi.point.OMEROPoint

move(double, int) - Method in interface net.imagej.omero.roi.point.OMEROPoint

move(RealLocalizable) - Method in interface net.imagej.omero.roi.point.OMEROPoint

move(float[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint

move(double[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint

move(int, int) - Method in interface net.imagej.omero.roi.point.OMEROPoint

move(long, int) - Method in interface net.imagej.omero.roi.point.OMEROPoint

move(Localizable) - Method in interface net.imagej.omero.roi.point.OMEROPoint

move(int[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint

move(long[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint

move(double[]) - Method in class net.imagej.overlay.AngleOverlay

move(double[]) - Method in class net.imagej.overlay.BinaryMaskOverlay

move(double[]) - Method in class net.imagej.overlay.CompositeOverlay

move(double[]) - Method in class net.imagej.overlay.EllipseOverlay

move(double[]) - Method in class net.imagej.overlay.GeneralPathOverlay

move(double[]) - Method in class net.imagej.overlay.LineOverlay

move(double[]) - Method in interface net.imagej.overlay.Overlay

move(double[]) - Method in class net.imagej.overlay.PointOverlay

move(double[]) - Method in class net.imagej.overlay.PolygonOverlay

move(double[]) - Method in class net.imagej.overlay.RectangleOverlay

move(double[]) - Method in class net.imagej.overlay.TextOverlay

move(long, int) - Method in class net.imagej.Position

Moves a given dimension of the Position by a given delta.

move(long[]) - Method in class net.imagej.Position

Moves all dimensions of the Position by given deltas.

move(int, int) - Method in class net.imagej.Position

Moves a given dimension of the Position by a given delta.

move(int[]) - Method in class net.imagej.Position

Moves all dimensions of the Position by given deltas.

move(Localizable) - Method in class net.imagej.Position

Moves all dimensions of the Position by given deltas.

move(double, double) - Method in class net.imagej.ui.swing.overlay.PointFigure

moveOutOfTheWay(File) - Static method in class net.imagej.ui.swing.updater.ImageJUpdater

moveOutOfTheWay(File) - Static method in class net.imagej.updater.Installer

moveTo(long, long) - Method in class net.imagej.DrawingTool

Moves the drawing origin of the current UV plane to the specified coordinates.

moveUpdatedIntoPlace() - Method in class net.imagej.updater.Installer

moveUpdatedIntoPlace(File, File) - Method in class net.imagej.updater.Installer

MTKT<T extends RealType<T>,U extends RealType> - Class in net.imagej.ops.coloc.maxTKendallTau

This algorithm calculates Maximum Trunctated Kendall Tau (MTKT) from Wang et al.

MTKT() - Constructor for class net.imagej.ops.coloc.maxTKendallTau.MTKT

mul(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator

mul(BigComplex, BigComplex) - Method in class net.imagej.types.BigComplex

Set self to the result of multiplication between two BigComplex values.

mul(BigComplex) - Method in class net.imagej.types.BigComplex

Multiplies another BigComplex value with self.

mul(float) - Method in class net.imagej.types.BigComplex

Multiplies self by a scalar (float) constant.

mul(double) - Method in class net.imagej.types.BigComplex

Multiplies self by a scalar (double) constant.

mul(PreciseFixedComplexFloatType, PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType

mul(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType

mul(float) - Method in class net.imagej.types.PreciseFixedComplexFloatType

mul(double) - Method in class net.imagej.types.PreciseFixedComplexFloatType

mul(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType

mul(PreciseFixedFloatType, PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType

mul(float) - Method in class net.imagej.types.PreciseFixedFloatType

mul(double) - Method in class net.imagej.types.PreciseFixedFloatType

mul(BigInteger) - Method in class net.imagej.types.PreciseFixedFloatType

mul(BigDecimal) - Method in class net.imagej.types.PreciseFixedFloatType

mul(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType

mul(float) - Method in class net.imagej.types.UnboundedIntegerType

mul(double) - Method in class net.imagej.types.UnboundedIntegerType

mul(BigInteger) - Method in class net.imagej.types.UnboundedIntegerType

mul(BigDecimal) - Method in class net.imagej.types.UnboundedIntegerType

MultidimImage - Class in net.imagej.plugins.commands.debug

A plugin that creates a simple multidimensional image with axes beyond those legacy ImageJ provides.

MultidimImage() - Constructor for class net.imagej.plugins.commands.debug.MultidimImage

Multiply() - Constructor for class net.imagej.ops.math.BinaryRealTypeMath.Multiply

Multiply() - Constructor for class net.imagej.ops.math.ConstantToIIOutputII.Multiply

Multiply() - Constructor for class net.imagej.ops.math.ConstantToIIOutputRAI.Multiply

Multiply() - Constructor for class net.imagej.ops.math.IIToIIOutputII.Multiply

Multiply() - Constructor for class net.imagej.ops.math.IIToRAIOutputII.Multiply

multiply(ArrayImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace

multiply(ArrayImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace

multiply(ArrayImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace

multiply(ArrayImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace

multiply(ArrayImg<N, LongArray>, long) - Method in class net.imagej.ops.math.MathNamespace

multiply(ArrayImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace

multiply(double, double) - Method in class net.imagej.ops.math.MathNamespace

multiply(float, float) - Method in class net.imagej.ops.math.MathNamespace

multiply(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace

multiply(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace

multiply(int, int) - Method in class net.imagej.ops.math.MathNamespace

multiply(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace

multiply(IterableInterval<T>, IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace

multiply(IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace

multiply(IterableInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace

multiply(long, long) - Method in class net.imagej.ops.math.MathNamespace

multiply(O, I1, I2) - Method in class net.imagej.ops.math.MathNamespace

multiply(PlanarImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace

multiply(PlanarImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace

multiply(PlanarImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace

multiply(PlanarImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace

multiply(PlanarImg<N, LongArray>, long) - Method in class net.imagej.ops.math.MathNamespace

multiply(PlanarImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace

multiply(RandomAccessibleInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace

multiply(T, T) - Method in class net.imagej.ops.math.MathNamespace

multiply(T, T, T) - Method in class net.imagej.ops.math.MathNamespace

Multiply() - Constructor for class net.imagej.ops.math.NumericTypeBinaryMath.Multiply

MultiplyByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyByte

MultiplyByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyByte

MultiplyByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyByte

MultiplyDataValuesBy<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign

Fills an output Dataset by multiplying an input Dataset by a user defined constant value.

MultiplyDataValuesBy() - Constructor for class net.imagej.plugins.commands.assign.MultiplyDataValuesBy

MultiplyDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyDouble

MultiplyDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyDouble

MultiplyDouble() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyDouble

MultiplyFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyFloat

MultiplyFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyFloat

MultiplyFloat() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyFloat

MultiplyInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyInt

MultiplyInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyInt

MultiplyInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyInt

MultiplyLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyLong

MultiplyLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyLong

MultiplyLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyLong

MultiplyShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyShort

MultiplyShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyShort

MultiplyShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyShort

MultiplyUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedByte

MultiplyUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedByte

MultiplyUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedByte

MultiplyUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedInt

MultiplyUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedInt

MultiplyUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedInt

MultiplyUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedLong

MultiplyUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedLong

MultiplyUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedLong

MultiplyUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedShort

MultiplyUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedShort

MultiplyUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedShort

mutate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator

mutate(RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.NonCirculantNormalizationFactor

apply the normalization image needed for semi noncirculant model see http://bigwww.epfl.ch/deconvolution/challenge2013/index.html?p=doc_math_rl

mutate(T) - Method in class net.imagej.ops.filter.addNoise.AddNoiseRealTypeCFI

mutate(RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.ifft.IFFTMethodsOpI

Compute an ND inverse FFT

mutate(A) - Method in class net.imagej.ops.identity.DefaultIdentity

mutate(A) - Method in class net.imagej.ops.join.DefaultJoinNInplaces

mutate(C) - Method in interface net.imagej.ops.join.Join2Inplaces

mutate(T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Not

mutate(O) - Method in interface net.imagej.ops.loop.LoopInplace

mutate(IterableInterval<A>) - Method in class net.imagej.ops.map.MapIIInplaceParallel

mutate(Iterable<A>) - Method in class net.imagej.ops.map.MapIterableInplace

mutate(ArrayImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddByte

mutate(ArrayImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddDouble

mutate(ArrayImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddFloat

mutate(ArrayImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddInt

mutate(ArrayImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddLong

mutate(ArrayImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddShort

mutate(ArrayImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedByte

mutate(ArrayImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedInt

mutate(ArrayImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedLong

mutate(ArrayImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedShort

mutate(ArrayImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideByte

mutate(ArrayImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideDouble

mutate(ArrayImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideFloat

mutate(ArrayImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideInt

mutate(ArrayImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideLong

mutate(ArrayImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideShort

mutate(ArrayImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedByte

mutate(ArrayImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedInt

mutate(ArrayImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedLong

mutate(ArrayImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedShort

mutate(ArrayImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyByte

mutate(ArrayImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyDouble

mutate(ArrayImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyFloat

mutate(ArrayImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyInt

mutate(ArrayImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyLong

mutate(ArrayImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyShort

mutate(ArrayImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedByte

mutate(ArrayImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedInt

mutate(ArrayImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedLong

mutate(ArrayImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedShort

mutate(ArrayImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractByte

mutate(ArrayImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractDouble

mutate(ArrayImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractFloat

mutate(ArrayImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractInt

mutate(ArrayImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractLong

mutate(ArrayImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractShort

mutate(ArrayImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedByte

mutate(ArrayImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedInt

mutate(ArrayImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedLong

mutate(ArrayImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedShort

mutate(ArrayImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddByte

mutate(ArrayImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddDouble

mutate(ArrayImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddFloat

mutate(ArrayImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddInt

mutate(ArrayImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddLong

mutate(ArrayImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddShort

mutate(ArrayImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedByte

mutate(ArrayImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedInt

mutate(ArrayImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedLong

mutate(ArrayImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedShort

mutate(ArrayImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideByte

mutate(ArrayImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideDouble

mutate(ArrayImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideFloat

mutate(ArrayImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideInt

mutate(ArrayImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideLong

mutate(ArrayImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideShort

mutate(ArrayImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedByte

mutate(ArrayImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedInt

mutate(ArrayImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedLong

mutate(ArrayImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedShort

mutate(ArrayImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyByte

mutate(ArrayImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyDouble

mutate(ArrayImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyFloat

mutate(ArrayImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyInt

mutate(ArrayImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyLong

mutate(ArrayImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyShort

mutate(ArrayImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedByte

mutate(ArrayImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedInt

mutate(ArrayImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedLong

mutate(ArrayImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedShort

mutate(ArrayImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractByte

mutate(ArrayImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractDouble

mutate(ArrayImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractFloat

mutate(ArrayImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractInt

mutate(ArrayImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractLong

mutate(ArrayImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractShort

mutate(ArrayImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedByte

mutate(ArrayImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedInt

mutate(ArrayImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedLong

mutate(ArrayImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedShort

mutate(IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Add

mutate(IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Divide

mutate(IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Multiply

mutate(IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Subtract

mutate(PlanarImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddByte

mutate(PlanarImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddDouble

mutate(PlanarImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddFloat

mutate(PlanarImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddInt

mutate(PlanarImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddLong

mutate(PlanarImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddShort

mutate(PlanarImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedByte

mutate(PlanarImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedInt

mutate(PlanarImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedLong

mutate(PlanarImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedShort

mutate(PlanarImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideByte

mutate(PlanarImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideDouble

mutate(PlanarImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideFloat

mutate(PlanarImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideInt

mutate(PlanarImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideLong

mutate(PlanarImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideShort

mutate(PlanarImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedByte

mutate(PlanarImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedInt

mutate(PlanarImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedLong

mutate(PlanarImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedShort

mutate(PlanarImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyByte

mutate(PlanarImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyDouble

mutate(PlanarImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyFloat

mutate(PlanarImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyInt

mutate(PlanarImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyLong

mutate(PlanarImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyShort

mutate(PlanarImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedByte

mutate(PlanarImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedInt

mutate(PlanarImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedLong

mutate(PlanarImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedShort

mutate(PlanarImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractByte

mutate(PlanarImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractDouble

mutate(PlanarImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractFloat

mutate(PlanarImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractInt

mutate(PlanarImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractLong

mutate(PlanarImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractShort

mutate(PlanarImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedByte

mutate(PlanarImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedInt

mutate(PlanarImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedLong

mutate(PlanarImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedShort

mutate(A) - Method in class net.imagej.ops.special.chain.UIOViaUI

mutate(O) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCFI1

mutate(O) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCI1

mutate(O) - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCI

mutate(O) - Method in interface net.imagej.ops.special.inplace.BinaryInplace1Op

mutate(O) - Method in interface net.imagej.ops.special.inplace.UnaryInplaceOp

Mutates the given input argument in-place.

mutate1(Vector3d, Quaterniondc) - Method in class net.imagej.ops.linalg.rotate.Rotate3d

mutate1(Vector3f, Quaternionfc) - Method in class net.imagej.ops.linalg.rotate.Rotate3f

mutate1(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.And

mutate1(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Or

mutate1(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Xor

mutate1(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.And

mutate1(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Or

mutate1(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Xor

mutate1(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.And

mutate1(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.Or

mutate1(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.Xor

mutate1(IterableInterval<EA>, IterableInterval<EI>) - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndII

mutate1(IterableInterval<EA>, IterableInterval<EI>) - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndIIParallel

mutate1(IterableInterval<EA>, RandomAccessibleInterval<EI>) - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndRAI

mutate1(IterableInterval<EA>, RandomAccessibleInterval<EI>) - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndRAIParallel

mutate1(RandomAccessibleInterval<EA>, IterableInterval<EI>) - Method in class net.imagej.ops.map.MapBinaryInplace1s.RAIAndII

mutate1(RandomAccessibleInterval<EA>, IterableInterval<EI>) - Method in class net.imagej.ops.map.MapBinaryInplace1s.RAIAndIIParallel

mutate1(IterableInterval<EA>, IterableInterval<EA>) - Method in class net.imagej.ops.map.MapIIAndIIInplace

mutate1(IterableInterval<EA>, IterableInterval<EA>) - Method in class net.imagej.ops.map.MapIIAndIIInplaceParallel

mutate1(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Add

mutate1(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Divide

mutate1(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Multiply

mutate1(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Subtract

mutate1(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Add

mutate1(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Divide

mutate1(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Multiply

mutate1(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Subtract

mutate1(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Add

mutate1(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Divide

mutate1(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Multiply

mutate1(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Subtract

mutate1(A, A) - Method in class net.imagej.ops.special.chain.BIOViaBI

mutate1(O, I2) - Method in interface net.imagej.ops.special.inplace.BinaryInplace1Op

Mutates the first argument in-place.

mutate2(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.And

mutate2(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Or

mutate2(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Xor

mutate2(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.And

mutate2(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Or

mutate2(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Xor

mutate2(IterableInterval<EA>, IterableInterval<EA>) - Method in class net.imagej.ops.map.MapIIAndIIInplace

mutate2(IterableInterval<EA>, IterableInterval<EA>) - Method in class net.imagej.ops.map.MapIIAndIIInplaceParallel

mutate2(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Add

mutate2(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Divide

mutate2(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Multiply

mutate2(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Subtract

mutate2(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Add

mutate2(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Divide

mutate2(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Multiply

mutate2(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Subtract

mutate2(A, A) - Method in class net.imagej.ops.special.chain.BIOViaBI

mutate2(I, O) - Method in interface net.imagej.ops.special.inplace.BinaryInplaceOp

Mutates the second argument in-place.

N

NaiveDoubleMesh - Class in net.imagej.mesh.naive

NaiveDoubleMesh() - Constructor for class net.imagej.mesh.naive.NaiveDoubleMesh

NaiveDoubleMesh.Triangles - Class in net.imagej.mesh.naive

NaiveDoubleMesh.Vertices - Class in net.imagej.mesh.naive

NaiveFloatMesh - Class in net.imagej.mesh.naive

NaiveFloatMesh() - Constructor for class net.imagej.mesh.naive.NaiveFloatMesh

NaiveFloatMesh.Triangles - Class in net.imagej.mesh.naive

NaiveFloatMesh.Vertices - Class in net.imagej.mesh.naive

NAME - Static variable in class net.imagej.app.ImageJApp

NAME - Static variable in class net.imagej.legacy.LegacyImageJApp

NAME - Static variable in class net.imagej.legacy.ui.LegacyUI

NAME - Static variable in class net.imagej.matlab.ImageJMATLABCommands

NAME - Static variable in interface net.imagej.ops.Ops.Coloc.Costes

NAME - Static variable in interface net.imagej.ops.Ops.Coloc.ICQ

NAME - Static variable in interface net.imagej.ops.Ops.Coloc.KendallTau

NAME - Static variable in interface net.imagej.ops.Ops.Coloc.Manders

NAME - Static variable in interface net.imagej.ops.Ops.Coloc.MaxTKendallTau

NAME - Static variable in interface net.imagej.ops.Ops.Coloc.Pearsons

NAME - Static variable in interface net.imagej.ops.Ops.Coloc.PValue

NAME - Static variable in interface net.imagej.ops.Ops.Coloc.Spearman

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Bit

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Cfloat32

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Cfloat64

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Clip

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Copy

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Float32

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Float64

NAME - Static variable in interface net.imagej.ops.Ops.Convert.ImageType

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Int16

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Int32

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Int64

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Int8

NAME - Static variable in interface net.imagej.ops.Ops.Convert.NormalizeScale

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Scale

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Uint12

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Uint128

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Uint16

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Uint2

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Uint32

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Uint4

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Uint64

NAME - Static variable in interface net.imagej.ops.Ops.Convert.Uint8

NAME - Static variable in interface net.imagej.ops.Ops.Copy.Img

NAME - Static variable in interface net.imagej.ops.Ops.Copy.ImgLabeling

NAME - Static variable in interface net.imagej.ops.Ops.Copy.ImgPlus

NAME - Static variable in interface net.imagej.ops.Ops.Copy.IterableInterval

NAME - Static variable in interface net.imagej.ops.Ops.Copy.LabelingMapping

NAME - Static variable in interface net.imagej.ops.Ops.Copy.RAI

NAME - Static variable in interface net.imagej.ops.Ops.Copy.Type

NAME - Static variable in interface net.imagej.ops.Ops.Create.Img

NAME - Static variable in interface net.imagej.ops.Ops.Create.ImgFactory

NAME - Static variable in interface net.imagej.ops.Ops.Create.ImgLabeling

NAME - Static variable in interface net.imagej.ops.Ops.Create.ImgPlus

NAME - Static variable in interface net.imagej.ops.Ops.Create.IntegerType

NAME - Static variable in interface net.imagej.ops.Ops.Create.Kernel

NAME - Static variable in interface net.imagej.ops.Ops.Create.Kernel2ndDerivBiGauss

NAME - Static variable in interface net.imagej.ops.Ops.Create.KernelBiGauss

NAME - Static variable in interface net.imagej.ops.Ops.Create.KernelDiffraction

NAME - Static variable in interface net.imagej.ops.Ops.Create.KernelGabor

NAME - Static variable in interface net.imagej.ops.Ops.Create.KernelGauss

NAME - Static variable in interface net.imagej.ops.Ops.Create.KernelLog

NAME - Static variable in interface net.imagej.ops.Ops.Create.KernelSobel

NAME - Static variable in interface net.imagej.ops.Ops.Create.LabelingMapping

NAME - Static variable in interface net.imagej.ops.Ops.Create.NativeImg

NAME - Static variable in interface net.imagej.ops.Ops.Create.NativeType

NAME - Static variable in interface net.imagej.ops.Ops.Create.Object

NAME - Static variable in interface net.imagej.ops.Ops.Create.Type

NAME - Static variable in interface net.imagej.ops.Ops.Deconvolve.Accelerate

NAME - Static variable in interface net.imagej.ops.Ops.Deconvolve.FirstGuess

NAME - Static variable in interface net.imagej.ops.Ops.Deconvolve.NormalizationFactor

NAME - Static variable in interface net.imagej.ops.Ops.Deconvolve.RichardsonLucy

NAME - Static variable in interface net.imagej.ops.Ops.Deconvolve.RichardsonLucyCorrection

NAME - Static variable in interface net.imagej.ops.Ops.Deconvolve.RichardsonLucyTV

NAME - Static variable in interface net.imagej.ops.Ops.Deconvolve.RichardsonLucyUpdate

NAME - Static variable in interface net.imagej.ops.Ops.Eval

NAME - Static variable in interface net.imagej.ops.Ops.Filter.AddNoise

NAME - Static variable in interface net.imagej.ops.Ops.Filter.AddPoissonNoise

NAME - Static variable in interface net.imagej.ops.Ops.Filter.AllPartialDerivatives

NAME - Static variable in interface net.imagej.ops.Ops.Filter.Bilateral

NAME - Static variable in interface net.imagej.ops.Ops.Filter.Convolve

NAME - Static variable in interface net.imagej.ops.Ops.Filter.Correlate

NAME - Static variable in interface net.imagej.ops.Ops.Filter.CreateFFTOutput

NAME - Static variable in interface net.imagej.ops.Ops.Filter.DerivativeGauss

NAME - Static variable in interface net.imagej.ops.Ops.Filter.DoG

NAME - Static variable in interface net.imagej.ops.Ops.Filter.FFT

NAME - Static variable in interface net.imagej.ops.Ops.Filter.FFTSize

NAME - Static variable in interface net.imagej.ops.Ops.Filter.FrangiVesselness

NAME - Static variable in interface net.imagej.ops.Ops.Filter.Gauss

NAME - Static variable in interface net.imagej.ops.Ops.Filter.Hessian

NAME - Static variable in interface net.imagej.ops.Ops.Filter.IFFT

NAME - Static variable in interface net.imagej.ops.Ops.Filter.LinearFilter

NAME - Static variable in interface net.imagej.ops.Ops.Filter.Max

NAME - Static variable in interface net.imagej.ops.Ops.Filter.Mean

NAME - Static variable in interface net.imagej.ops.Ops.Filter.Median

NAME - Static variable in interface net.imagej.ops.Ops.Filter.Min

NAME - Static variable in interface net.imagej.ops.Ops.Filter.PaddingIntervalCentered

NAME - Static variable in interface net.imagej.ops.Ops.Filter.PaddingIntervalOrigin

NAME - Static variable in interface net.imagej.ops.Ops.Filter.PadFFTInput

NAME - Static variable in interface net.imagej.ops.Ops.Filter.PadInput

NAME - Static variable in interface net.imagej.ops.Ops.Filter.PadShiftFFTKernel

NAME - Static variable in interface net.imagej.ops.Ops.Filter.PartialDerivative

NAME - Static variable in interface net.imagej.ops.Ops.Filter.Sigma

NAME - Static variable in interface net.imagej.ops.Ops.Filter.Sobel

NAME - Static variable in interface net.imagej.ops.Ops.Filter.Tubeness

NAME - Static variable in interface net.imagej.ops.Ops.Filter.Variance

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Boundary

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.BoundaryConvexHull

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.BoundarySize

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.BoundarySizeConvexHull

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.BoundingBox

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Boxivity

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.CenterOfGravity

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Centroid

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Circularity

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Compactness

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Contour

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.ConvexHull

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Convexity

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Eccentricity

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.FeretsAngle

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.FeretsDiameter

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MainElongation

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MajorAxis

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MarchingCubes

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MaximumFeret

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MaximumFeretsAngle

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MaximumFeretsDiameter

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MedianElongation

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MinimumFeret

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MinimumFeretsAngle

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MinimumFeretsDiameter

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MinorAxis

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Roundness

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.SecondMoment

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Size

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.SizeConvexHull

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.SmallestEnclosingBoundingBox

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Solidity

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Spareness

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Sphericity

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.VertexInterpolator

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.VerticesCount

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.VerticesCountConvexHull

NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Voxelization

NAME - Static variable in interface net.imagej.ops.Ops.Haralick.ASM

NAME - Static variable in interface net.imagej.ops.Ops.Haralick.ClusterPromenence

NAME - Static variable in interface net.imagej.ops.Ops.Haralick.ClusterShade

NAME - Static variable in interface net.imagej.ops.Ops.Haralick.Contrast

NAME - Static variable in interface net.imagej.ops.Ops.Haralick.Correlation

NAME - Static variable in interface net.imagej.ops.Ops.Haralick.DifferenceEntropy

NAME - Static variable in interface net.imagej.ops.Ops.Haralick.DifferenceVariance

NAME - Static variable in interface net.imagej.ops.Ops.Haralick.Entropy

NAME - Static variable in interface net.imagej.ops.Ops.Haralick.ICM1

NAME - Static variable in interface net.imagej.ops.Ops.Haralick.ICM2

NAME - Static variable in interface net.imagej.ops.Ops.Haralick.IFDM

NAME - Static variable in interface net.imagej.ops.Ops.Haralick.MaxProbability

NAME - Static variable in interface net.imagej.ops.Ops.Haralick.SumAverage

NAME - Static variable in interface net.imagej.ops.Ops.Haralick.SumEntropy

NAME - Static variable in interface net.imagej.ops.Ops.Haralick.SumVariance

NAME - Static variable in interface net.imagej.ops.Ops.Haralick.TextureHomogeneity

NAME - Static variable in interface net.imagej.ops.Ops.Haralick.Variance

NAME - Static variable in interface net.imagej.ops.Ops.Help

NAME - Static variable in interface net.imagej.ops.Ops.HoG.HistogramOfOrientedGradients

NAME - Static variable in interface net.imagej.ops.Ops.Identity

NAME - Static variable in interface net.imagej.ops.Ops.Image.ASCII

NAME - Static variable in interface net.imagej.ops.Ops.Image.CooccurrenceMatrix

NAME - Static variable in interface net.imagej.ops.Ops.Image.DistanceTransform

NAME - Static variable in interface net.imagej.ops.Ops.Image.Equation

NAME - Static variable in interface net.imagej.ops.Ops.Image.Fill

NAME - Static variable in interface net.imagej.ops.Ops.Image.Histogram

NAME - Static variable in interface net.imagej.ops.Ops.Image.Integral

NAME - Static variable in interface net.imagej.ops.Ops.Image.Invert

NAME - Static variable in interface net.imagej.ops.Ops.Image.Normalize

NAME - Static variable in interface net.imagej.ops.Ops.Image.SquareIntegral

NAME - Static variable in interface net.imagej.ops.Ops.Image.Watershed

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment00

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment01

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment02

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment03

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment10

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment11

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment12

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment20

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment21

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment30

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.HuMoment1

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.HuMoment2

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.HuMoment3

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.HuMoment4

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.HuMoment5

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.HuMoment6

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.HuMoment7

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.Moment00

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.Moment01

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.Moment10

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.Moment11

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.NormalizedCentralMoment02

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.NormalizedCentralMoment03

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.NormalizedCentralMoment11

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.NormalizedCentralMoment12

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.NormalizedCentralMoment20

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.NormalizedCentralMoment21

NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.NormalizedCentralMoment30

NAME - Static variable in interface net.imagej.ops.Ops.Join

NAME - Static variable in interface net.imagej.ops.Ops.Labeling.CCA

NAME - Static variable in interface net.imagej.ops.Ops.Labeling.Merge

NAME - Static variable in interface net.imagej.ops.Ops.LBP.LBP2D

NAME - Static variable in interface net.imagej.ops.Ops.LinAlg.Rotate

NAME - Static variable in interface net.imagej.ops.Ops.Logic.And

NAME - Static variable in interface net.imagej.ops.Ops.Logic.Bool

NAME - Static variable in interface net.imagej.ops.Ops.Logic.Conditional

NAME - Static variable in interface net.imagej.ops.Ops.Logic.Equal

NAME - Static variable in interface net.imagej.ops.Ops.Logic.GreaterThan

NAME - Static variable in interface net.imagej.ops.Ops.Logic.GreaterThanOrEqual

NAME - Static variable in interface net.imagej.ops.Ops.Logic.LessThan

NAME - Static variable in interface net.imagej.ops.Ops.Logic.LessThanOrEqual

NAME - Static variable in interface net.imagej.ops.Ops.Logic.Not

NAME - Static variable in interface net.imagej.ops.Ops.Logic.NotEqual

NAME - Static variable in interface net.imagej.ops.Ops.Logic.Or

NAME - Static variable in interface net.imagej.ops.Ops.Logic.Xor

NAME - Static variable in interface net.imagej.ops.Ops.Lookup

NAME - Static variable in interface net.imagej.ops.Ops.Loop

NAME - Static variable in interface net.imagej.ops.Ops.Map

NAME - Static variable in interface net.imagej.ops.Ops.Math.Abs

NAME - Static variable in interface net.imagej.ops.Ops.Math.Add

NAME - Static variable in interface net.imagej.ops.Ops.Math.And

NAME - Static variable in interface net.imagej.ops.Ops.Math.Arccos

NAME - Static variable in interface net.imagej.ops.Ops.Math.Arccosh

NAME - Static variable in interface net.imagej.ops.Ops.Math.Arccot

NAME - Static variable in interface net.imagej.ops.Ops.Math.Arccoth

NAME - Static variable in interface net.imagej.ops.Ops.Math.Arccsc

NAME - Static variable in interface net.imagej.ops.Ops.Math.Arccsch

NAME - Static variable in interface net.imagej.ops.Ops.Math.Arcsec

NAME - Static variable in interface net.imagej.ops.Ops.Math.Arcsech

NAME - Static variable in interface net.imagej.ops.Ops.Math.Arcsin

NAME - Static variable in interface net.imagej.ops.Ops.Math.Arcsinh

NAME - Static variable in interface net.imagej.ops.Ops.Math.Arctan

NAME - Static variable in interface net.imagej.ops.Ops.Math.Arctanh

NAME - Static variable in interface net.imagej.ops.Ops.Math.Assign

NAME - Static variable in interface net.imagej.ops.Ops.Math.Ceil

NAME - Static variable in interface net.imagej.ops.Ops.Math.Complement

NAME - Static variable in interface net.imagej.ops.Ops.Math.ComplexConjugateMultiply

NAME - Static variable in interface net.imagej.ops.Ops.Math.Cos

NAME - Static variable in interface net.imagej.ops.Ops.Math.Cosh

NAME - Static variable in interface net.imagej.ops.Ops.Math.Cot

NAME - Static variable in interface net.imagej.ops.Ops.Math.Coth

NAME - Static variable in interface net.imagej.ops.Ops.Math.Csc

NAME - Static variable in interface net.imagej.ops.Ops.Math.Csch

NAME - Static variable in interface net.imagej.ops.Ops.Math.CubeRoot

NAME - Static variable in interface net.imagej.ops.Ops.Math.Divide

NAME - Static variable in interface net.imagej.ops.Ops.Math.Exp

NAME - Static variable in interface net.imagej.ops.Ops.Math.ExpMinusOne

NAME - Static variable in interface net.imagej.ops.Ops.Math.Floor

NAME - Static variable in interface net.imagej.ops.Ops.Math.Gamma

NAME - Static variable in interface net.imagej.ops.Ops.Math.Invert

NAME - Static variable in interface net.imagej.ops.Ops.Math.LeftShift

NAME - Static variable in interface net.imagej.ops.Ops.Math.Log

NAME - Static variable in interface net.imagej.ops.Ops.Math.Log10

NAME - Static variable in interface net.imagej.ops.Ops.Math.Log2

NAME - Static variable in interface net.imagej.ops.Ops.Math.LogOnePlusX

NAME - Static variable in interface net.imagej.ops.Ops.Math.Max

NAME - Static variable in interface net.imagej.ops.Ops.Math.Min

NAME - Static variable in interface net.imagej.ops.Ops.Math.Multiply

NAME - Static variable in interface net.imagej.ops.Ops.Math.NearestInt

NAME - Static variable in interface net.imagej.ops.Ops.Math.Negate

NAME - Static variable in interface net.imagej.ops.Ops.Math.Or

NAME - Static variable in interface net.imagej.ops.Ops.Math.Power

NAME - Static variable in interface net.imagej.ops.Ops.Math.RandomGaussian

NAME - Static variable in interface net.imagej.ops.Ops.Math.RandomUniform

NAME - Static variable in interface net.imagej.ops.Ops.Math.Reciprocal

NAME - Static variable in interface net.imagej.ops.Ops.Math.Remainder

NAME - Static variable in interface net.imagej.ops.Ops.Math.RightShift

NAME - Static variable in interface net.imagej.ops.Ops.Math.Round

NAME - Static variable in interface net.imagej.ops.Ops.Math.Sec

NAME - Static variable in interface net.imagej.ops.Ops.Math.Sech

NAME - Static variable in interface net.imagej.ops.Ops.Math.Signum

NAME - Static variable in interface net.imagej.ops.Ops.Math.Sin

NAME - Static variable in interface net.imagej.ops.Ops.Math.Sinc

NAME - Static variable in interface net.imagej.ops.Ops.Math.SincPi

NAME - Static variable in interface net.imagej.ops.Ops.Math.Sinh

NAME - Static variable in interface net.imagej.ops.Ops.Math.Sqr

NAME - Static variable in interface net.imagej.ops.Ops.Math.Sqrt

NAME - Static variable in interface net.imagej.ops.Ops.Math.Step

NAME - Static variable in interface net.imagej.ops.Ops.Math.Subtract

NAME - Static variable in interface net.imagej.ops.Ops.Math.Tan

NAME - Static variable in interface net.imagej.ops.Ops.Math.Tanh

NAME - Static variable in interface net.imagej.ops.Ops.Math.Ulp

NAME - Static variable in interface net.imagej.ops.Ops.Math.UnsignedRightShift

NAME - Static variable in interface net.imagej.ops.Ops.Math.Xor

NAME - Static variable in interface net.imagej.ops.Ops.Math.Zero

NAME - Static variable in interface net.imagej.ops.Ops.Morphology.BlackTopHat

NAME - Static variable in interface net.imagej.ops.Ops.Morphology.Close

NAME - Static variable in interface net.imagej.ops.Ops.Morphology.Dilate

NAME - Static variable in interface net.imagej.ops.Ops.Morphology.Erode

NAME - Static variable in interface net.imagej.ops.Ops.Morphology.ExtractHoles

NAME - Static variable in interface net.imagej.ops.Ops.Morphology.FillHoles

NAME - Static variable in interface net.imagej.ops.Ops.Morphology.FloodFill

NAME - Static variable in interface net.imagej.ops.Ops.Morphology.Open

NAME - Static variable in interface net.imagej.ops.Ops.Morphology.Outline

NAME - Static variable in interface net.imagej.ops.Ops.Morphology.ThinGuoHall

NAME - Static variable in interface net.imagej.ops.Ops.Morphology.ThinHilditch

NAME - Static variable in interface net.imagej.ops.Ops.Morphology.ThinMorphological

NAME - Static variable in interface net.imagej.ops.Ops.Morphology.ThinZhangSuen

NAME - Static variable in interface net.imagej.ops.Ops.Morphology.TopHat

NAME - Static variable in interface net.imagej.ops.Ops.Run

NAME - Static variable in interface net.imagej.ops.Ops.Segment.DetectJunctions

NAME - Static variable in interface net.imagej.ops.Ops.Segment.DetectRidges

NAME - Static variable in interface net.imagej.ops.Ops.Slice

NAME - Static variable in interface net.imagej.ops.Ops.Stats.GeometricMean

NAME - Static variable in interface net.imagej.ops.Ops.Stats.HarmonicMean

NAME - Static variable in interface net.imagej.ops.Ops.Stats.IntegralMean

NAME - Static variable in interface net.imagej.ops.Ops.Stats.IntegralSum

NAME - Static variable in interface net.imagej.ops.Ops.Stats.IntegralVariance

NAME - Static variable in interface net.imagej.ops.Ops.Stats.Kurtosis

NAME - Static variable in interface net.imagej.ops.Ops.Stats.LeastSquares

NAME - Static variable in interface net.imagej.ops.Ops.Stats.Max

NAME - Static variable in interface net.imagej.ops.Ops.Stats.Mean

NAME - Static variable in interface net.imagej.ops.Ops.Stats.Median

NAME - Static variable in interface net.imagej.ops.Ops.Stats.Min

NAME - Static variable in interface net.imagej.ops.Ops.Stats.MinMax

NAME - Static variable in interface net.imagej.ops.Ops.Stats.Moment1AboutMean

NAME - Static variable in interface net.imagej.ops.Ops.Stats.Moment2AboutMean

NAME - Static variable in interface net.imagej.ops.Ops.Stats.Moment3AboutMean

NAME - Static variable in interface net.imagej.ops.Ops.Stats.Moment4AboutMean

NAME - Static variable in interface net.imagej.ops.Ops.Stats.Percentile

NAME - Static variable in interface net.imagej.ops.Ops.Stats.Quantile

NAME - Static variable in interface net.imagej.ops.Ops.Stats.Size

NAME - Static variable in interface net.imagej.ops.Ops.Stats.Skewness

NAME - Static variable in interface net.imagej.ops.Ops.Stats.StdDev

NAME - Static variable in interface net.imagej.ops.Ops.Stats.Sum

NAME - Static variable in interface net.imagej.ops.Ops.Stats.SumOfInverses

NAME - Static variable in interface net.imagej.ops.Ops.Stats.SumOfLogs

NAME - Static variable in interface net.imagej.ops.Ops.Stats.SumOfSquares

NAME - Static variable in interface net.imagej.ops.Ops.Stats.Variance

NAME - Static variable in interface net.imagej.ops.Ops.Tamura.Coarseness

NAME - Static variable in interface net.imagej.ops.Ops.Tamura.Contrast

NAME - Static variable in interface net.imagej.ops.Ops.Tamura.Directionality

NAME - Static variable in interface net.imagej.ops.Ops.Thread.Chunker

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Apply

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Huang

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.IJ1

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Intermodes

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.IsoData

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Li

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.LocalBernsenThreshold

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.LocalContrastThreshold

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.LocalMeanThreshold

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.LocalMedianThreshold

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.LocalMidGreyThreshold

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.LocalNiblackThreshold

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.LocalPhansalkarThreshold

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.LocalSauvolaThreshold

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.MaxEntropy

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.MaxLikelihood

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Mean

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.MinError

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Minimum

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Moments

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Otsu

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Percentile

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.RenyiEntropy

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Rosin

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Shanbhag

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Triangle

NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Yen

NAME - Static variable in interface net.imagej.ops.Ops.Topology.BoxCount

NAME - Static variable in interface net.imagej.ops.Ops.Topology.EulerCharacteristic26N

NAME - Static variable in interface net.imagej.ops.Ops.Topology.EulerCharacteristic26NFloating

NAME - Static variable in interface net.imagej.ops.Ops.Topology.EulerCorrection

NAME - Static variable in interface net.imagej.ops.Ops.Transform.AddDimensionView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.CollapseNumericView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.CollapseRealView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.CollapseView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.ConcatenateView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.Crop

NAME - Static variable in interface net.imagej.ops.Ops.Transform.DropSingletonDimensionsView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.ExtendBorderView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.ExtendMirrorDoubleView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.ExtendMirrorSingleView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.ExtendPeriodicView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.ExtendRandomView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.ExtendValueView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.ExtendView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.ExtendZeroView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.FlatIterableView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.HyperSliceView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.InterpolateView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.IntervalView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.InvertAxisView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.IterableView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.OffsetView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.PermuteCoordinatesInverseView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.PermuteCoordinatesView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.PermuteView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.Project

NAME - Static variable in interface net.imagej.ops.Ops.Transform.RasterView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.RotateView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.ScaleView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.ShearView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.StackView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.SubsampleView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.TranslateView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.UnshearView

NAME - Static variable in interface net.imagej.ops.Ops.Transform.ZeroMinView

NAME - Static variable in interface net.imagej.ops.Ops.Zernike.Magnitude

NAME - Static variable in interface net.imagej.ops.Ops.Zernike.Phase

name() - Method in class net.imagej.ops.search.OpSearchResult

nameChanged() - Method in class net.imagej.lut.LUTSelector

NameHarmonizer - Class in net.imagej.legacy.translate

This harmonizer keeps ImagePlus and Display names synchronized

NameHarmonizer() - Constructor for class net.imagej.legacy.translate.NameHarmonizer

nameMatches(String) - Method in class net.imagej.ops.OpInfo

Gets whether the given name matches this op.

namespace(Class<NS>) - Method in class net.imagej.ops.CustomOpEnvironment

namespace(Class<NS>) - Method in class net.imagej.ops.DefaultOpService

Namespace - Interface in net.imagej.ops

A namespace is a collection of ops with related functions.

namespace(Class<NS>) - Method in interface net.imagej.ops.OpEnvironment

Gets the namespace of the given class.

NamespacePreprocessor - Class in net.imagej.ops

PreprocessorPlugin implementation that looks up requested Namespace implementations, obtaining their singleton instance handled by the NamespaceService.

NamespacePreprocessor() - Constructor for class net.imagej.ops.NamespacePreprocessor

NamespaceService - Interface in net.imagej.ops

Interface for services that manage Ops Namespaces.

NanBackground - Class in net.imagej.plugins.commands.imglib

Fills the background pixels of an image with NaN.

NanBackground() - Constructor for class net.imagej.plugins.commands.imglib.NanBackground

nativeType() - Method in class net.imagej.ops.create.CreateNamespace

nativeType(Class<T>) - Method in class net.imagej.ops.create.CreateNamespace

nearestInt(O, I) - Method in class net.imagej.ops.math.MathNamespace

NearestInt() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.NearestInt

needsFeedback(Iterable<Conflicts.Conflict>) - Static method in class net.imagej.updater.Conflicts

Determine whether a list of conflicts requires user feedback.

needUninstall(FileObject, FilesCollection) - Method in class net.imagej.updater.Conflicts

needUpload(FileObject, FilesCollection) - Method in class net.imagej.updater.Conflicts

neg(Object) - Method in class net.imagej.ops.eval.OpEvaluator

negate() - Method in class net.imagej.omero.legacy.text.OMEROText

negate() - Method in class net.imagej.omero.legacy.text.TextRoiWrapper

negate(double) - Method in class net.imagej.ops.math.MathNamespace

negate(float) - Method in class net.imagej.ops.math.MathNamespace

negate(int) - Method in class net.imagej.ops.math.MathNamespace

negate(long) - Method in class net.imagej.ops.math.MathNamespace

negate(O, I) - Method in class net.imagej.ops.math.MathNamespace

Negate() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Negate

negate() - Method in class net.imagej.types.PreciseFixedFloatType

Neighborhood - Interface in net.imagej.plugins.commands.assign.noisereduce

A Neighborhood ties together a set of points (PointSet) and a text description.

Neighborhood3x3Operation - Class in net.imagej.plugins.commands.neigh

Neighborhood3x3Operation - a helper class for 3x3 neighborhood operation plugins such as SmoothDataValues, SharpenDataValues, and FindEdges.

Neighborhood3x3Operation(Dataset, RealRect, Neighborhood3x3Watcher) - Constructor for class net.imagej.plugins.commands.neigh.Neighborhood3x3Operation

Neighborhood3x3Watcher - Interface in net.imagej.plugins.commands.neigh

This interface is implemented by classes who want to do a 3x3 neighborhood operation of some sort.

neighborhoodEulerIndex(RandomAccess, long, long, long) - Static method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26N

Determines the LUT index for this 2x2x2 neighborhood

neighTypeString - Variable in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin

net.imagej - package net.imagej

net.imagej.animation - package net.imagej.animation

net.imagej.app - package net.imagej.app

net.imagej.autoscale - package net.imagej.autoscale

net.imagej.axis - package net.imagej.axis

net.imagej.batch.input - package net.imagej.batch.input

net.imagej.command - package net.imagej.command

net.imagej.config - package net.imagej.config

net.imagej.convert - package net.imagej.convert

net.imagej.display - package net.imagej.display

net.imagej.display.event - package net.imagej.display.event

net.imagej.display.process - package net.imagej.display.process

net.imagej.event - package net.imagej.event

net.imagej.interval - package net.imagej.interval

net.imagej.launcher - package net.imagej.launcher

net.imagej.legacy - package net.imagej.legacy

net.imagej.legacy.command - package net.imagej.legacy.command

net.imagej.legacy.convert - package net.imagej.legacy.convert

net.imagej.legacy.convert.roi - package net.imagej.legacy.convert.roi

net.imagej.legacy.convert.roi.box - package net.imagej.legacy.convert.roi.box

net.imagej.legacy.convert.roi.ellipsoid - package net.imagej.legacy.convert.roi.ellipsoid

net.imagej.legacy.convert.roi.line - package net.imagej.legacy.convert.roi.line

net.imagej.legacy.convert.roi.point - package net.imagej.legacy.convert.roi.point

net.imagej.legacy.convert.roi.polygon2d - package net.imagej.legacy.convert.roi.polygon2d

net.imagej.legacy.convert.roi.polyline - package net.imagej.legacy.convert.roi.polyline

net.imagej.legacy.display - package net.imagej.legacy.display

net.imagej.legacy.plugin - package net.imagej.legacy.plugin

net.imagej.legacy.search - package net.imagej.legacy.search

net.imagej.legacy.translate - package net.imagej.legacy.translate

net.imagej.legacy.ui - package net.imagej.legacy.ui

net.imagej.lut - package net.imagej.lut

net.imagej.lut.io - package net.imagej.lut.io

net.imagej.matlab - package net.imagej.matlab

net.imagej.mesh - package net.imagej.mesh

net.imagej.mesh.io - package net.imagej.mesh.io

net.imagej.mesh.io.ply - package net.imagej.mesh.io.ply

net.imagej.mesh.io.stl - package net.imagej.mesh.io.stl

net.imagej.mesh.io.xyz - package net.imagej.mesh.io.xyz

net.imagej.mesh.naive - package net.imagej.mesh.naive

net.imagej.mesh.nio - package net.imagej.mesh.nio

net.imagej.minmax - package net.imagej.minmax

net.imagej.notebook - package net.imagej.notebook

net.imagej.notebook.chart - package net.imagej.notebook.chart

net.imagej.notebook.image - package net.imagej.notebook.image

net.imagej.notebook.mime - package net.imagej.notebook.mime

net.imagej.notebook.table - package net.imagej.notebook.table

net.imagej.omero - package net.imagej.omero

net.imagej.omero.commands - package net.imagej.omero.commands

net.imagej.omero.legacy - package net.imagej.omero.legacy

net.imagej.omero.legacy.convert - package net.imagej.omero.legacy.convert

net.imagej.omero.legacy.mask - package net.imagej.omero.legacy.mask

net.imagej.omero.legacy.text - package net.imagej.omero.legacy.text

net.imagej.omero.roi - package net.imagej.omero.roi

net.imagej.omero.roi.ellipse - package net.imagej.omero.roi.ellipse

net.imagej.omero.roi.line - package net.imagej.omero.roi.line

net.imagej.omero.roi.mask - package net.imagej.omero.roi.mask

net.imagej.omero.roi.point - package net.imagej.omero.roi.point

net.imagej.omero.roi.polyshape - package net.imagej.omero.roi.polyshape

net.imagej.omero.roi.project - package net.imagej.omero.roi.project

net.imagej.omero.roi.rectangle - package net.imagej.omero.roi.rectangle

net.imagej.omero.roi.transform - package net.imagej.omero.roi.transform

net.imagej.ops - package net.imagej.ops

net.imagej.ops.bufferfactories - package net.imagej.ops.bufferfactories

net.imagej.ops.cached - package net.imagej.ops.cached

net.imagej.ops.coloc - package net.imagej.ops.coloc

net.imagej.ops.coloc.icq - package net.imagej.ops.coloc.icq

net.imagej.ops.coloc.kendallTau - package net.imagej.ops.coloc.kendallTau

net.imagej.ops.coloc.maxTKendallTau - package net.imagej.ops.coloc.maxTKendallTau

net.imagej.ops.coloc.pearsons - package net.imagej.ops.coloc.pearsons

net.imagej.ops.coloc.pValue - package net.imagej.ops.coloc.pValue

net.imagej.ops.commands.coloc - package net.imagej.ops.commands.coloc

net.imagej.ops.commands.convert - package net.imagej.ops.commands.convert

net.imagej.ops.commands.convolve - package net.imagej.ops.commands.convolve

net.imagej.ops.commands.filter - package net.imagej.ops.commands.filter

net.imagej.ops.commands.morphology - package net.imagej.ops.commands.morphology

net.imagej.ops.commands.project - package net.imagej.ops.commands.project

net.imagej.ops.commands.threshold - package net.imagej.ops.commands.threshold

net.imagej.ops.convert - package net.imagej.ops.convert

net.imagej.ops.convert.clip - package net.imagej.ops.convert.clip

net.imagej.ops.convert.copy - package net.imagej.ops.convert.copy

net.imagej.ops.convert.imageType - package net.imagej.ops.convert.imageType

net.imagej.ops.convert.normalizeScale - package net.imagej.ops.convert.normalizeScale

net.imagej.ops.convert.scale - package net.imagej.ops.convert.scale

net.imagej.ops.copy - package net.imagej.ops.copy

net.imagej.ops.create - package net.imagej.ops.create

net.imagej.ops.create.img - package net.imagej.ops.create.img

net.imagej.ops.create.imgFactory - package net.imagej.ops.create.imgFactory

net.imagej.ops.create.imgLabeling - package net.imagej.ops.create.imgLabeling

net.imagej.ops.create.imgPlus - package net.imagej.ops.create.imgPlus

net.imagej.ops.create.integerType - package net.imagej.ops.create.integerType

net.imagej.ops.create.kernel - package net.imagej.ops.create.kernel

net.imagej.ops.create.kernelBiGauss - package net.imagej.ops.create.kernelBiGauss

net.imagej.ops.create.kernelDiffraction - package net.imagej.ops.create.kernelDiffraction

net.imagej.ops.create.kernelGabor - package net.imagej.ops.create.kernelGabor

net.imagej.ops.create.kernelGauss - package net.imagej.ops.create.kernelGauss

net.imagej.ops.create.kernelLog - package net.imagej.ops.create.kernelLog

net.imagej.ops.create.kernelSobel - package net.imagej.ops.create.kernelSobel

net.imagej.ops.create.labelingMapping - package net.imagej.ops.create.labelingMapping

net.imagej.ops.create.nativeType - package net.imagej.ops.create.nativeType

net.imagej.ops.create.object - package net.imagej.ops.create.object

net.imagej.ops.deconvolve - package net.imagej.ops.deconvolve

net.imagej.ops.deconvolve.accelerate - package net.imagej.ops.deconvolve.accelerate

net.imagej.ops.eval - package net.imagej.ops.eval

net.imagej.ops.features.haralick - package net.imagej.ops.features.haralick

net.imagej.ops.features.haralick.helper - package net.imagej.ops.features.haralick.helper

net.imagej.ops.features.hog - package net.imagej.ops.features.hog

net.imagej.ops.features.lbp2d - package net.imagej.ops.features.lbp2d

net.imagej.ops.features.tamura2d - package net.imagej.ops.features.tamura2d

net.imagej.ops.features.zernike - package net.imagej.ops.features.zernike

net.imagej.ops.features.zernike.helper - package net.imagej.ops.features.zernike.helper

net.imagej.ops.filter - package net.imagej.ops.filter

net.imagej.ops.filter.addNoise - package net.imagej.ops.filter.addNoise

net.imagej.ops.filter.addPoissonNoise - package net.imagej.ops.filter.addPoissonNoise

net.imagej.ops.filter.bilateral - package net.imagej.ops.filter.bilateral

net.imagej.ops.filter.convolve - package net.imagej.ops.filter.convolve

net.imagej.ops.filter.correlate - package net.imagej.ops.filter.correlate

net.imagej.ops.filter.derivative - package net.imagej.ops.filter.derivative

net.imagej.ops.filter.derivativeGauss - package net.imagej.ops.filter.derivativeGauss

net.imagej.ops.filter.dog - package net.imagej.ops.filter.dog

net.imagej.ops.filter.fft - package net.imagej.ops.filter.fft

net.imagej.ops.filter.fftSize - package net.imagej.ops.filter.fftSize

net.imagej.ops.filter.gauss - package net.imagej.ops.filter.gauss

net.imagej.ops.filter.hessian - package net.imagej.ops.filter.hessian

net.imagej.ops.filter.ifft - package net.imagej.ops.filter.ifft

net.imagej.ops.filter.max - package net.imagej.ops.filter.max

net.imagej.ops.filter.mean - package net.imagej.ops.filter.mean

net.imagej.ops.filter.median - package net.imagej.ops.filter.median

net.imagej.ops.filter.min - package net.imagej.ops.filter.min

net.imagej.ops.filter.pad - package net.imagej.ops.filter.pad

net.imagej.ops.filter.sigma - package net.imagej.ops.filter.sigma

net.imagej.ops.filter.sobel - package net.imagej.ops.filter.sobel

net.imagej.ops.filter.tubeness - package net.imagej.ops.filter.tubeness

net.imagej.ops.filter.variance - package net.imagej.ops.filter.variance

net.imagej.ops.filter.vesselness - package net.imagej.ops.filter.vesselness

net.imagej.ops.geom - package net.imagej.ops.geom

net.imagej.ops.geom.geom2d - package net.imagej.ops.geom.geom2d

net.imagej.ops.geom.geom3d - package net.imagej.ops.geom.geom3d

net.imagej.ops.geom.geom3d.mesh - package net.imagej.ops.geom.geom3d.mesh

net.imagej.ops.help - package net.imagej.ops.help

net.imagej.ops.identity - package net.imagej.ops.identity

net.imagej.ops.image - package net.imagej.ops.image

net.imagej.ops.image.ascii - package net.imagej.ops.image.ascii

net.imagej.ops.image.cooccurrenceMatrix - package net.imagej.ops.image.cooccurrenceMatrix

net.imagej.ops.image.distancetransform - package net.imagej.ops.image.distancetransform

net.imagej.ops.image.equation - package net.imagej.ops.image.equation

net.imagej.ops.image.fill - package net.imagej.ops.image.fill

net.imagej.ops.image.histogram - package net.imagej.ops.image.histogram

net.imagej.ops.image.integral - package net.imagej.ops.image.integral

net.imagej.ops.image.invert - package net.imagej.ops.image.invert

net.imagej.ops.image.normalize - package net.imagej.ops.image.normalize

net.imagej.ops.image.watershed - package net.imagej.ops.image.watershed

net.imagej.ops.imagemoments - package net.imagej.ops.imagemoments

net.imagej.ops.imagemoments.centralmoments - package net.imagej.ops.imagemoments.centralmoments

net.imagej.ops.imagemoments.hu - package net.imagej.ops.imagemoments.hu

net.imagej.ops.imagemoments.moments - package net.imagej.ops.imagemoments.moments

net.imagej.ops.imagemoments.normalizedcentralmoments - package net.imagej.ops.imagemoments.normalizedcentralmoments

net.imagej.ops.join - package net.imagej.ops.join

net.imagej.ops.labeling - package net.imagej.ops.labeling

net.imagej.ops.labeling.cca - package net.imagej.ops.labeling.cca

net.imagej.ops.linalg - package net.imagej.ops.linalg

net.imagej.ops.linalg.rotate - package net.imagej.ops.linalg.rotate

net.imagej.ops.logic - package net.imagej.ops.logic

net.imagej.ops.lookup - package net.imagej.ops.lookup

net.imagej.ops.loop - package net.imagej.ops.loop

net.imagej.ops.map - package net.imagej.ops.map

net.imagej.ops.map.neighborhood - package net.imagej.ops.map.neighborhood

net.imagej.ops.math - package net.imagej.ops.math

net.imagej.ops.math.multiply - package net.imagej.ops.math.multiply

net.imagej.ops.morphology - package net.imagej.ops.morphology

net.imagej.ops.morphology.blackTopHat - package net.imagej.ops.morphology.blackTopHat

net.imagej.ops.morphology.close - package net.imagej.ops.morphology.close

net.imagej.ops.morphology.dilate - package net.imagej.ops.morphology.dilate

net.imagej.ops.morphology.erode - package net.imagej.ops.morphology.erode

net.imagej.ops.morphology.extractHoles - package net.imagej.ops.morphology.extractHoles

net.imagej.ops.morphology.fillHoles - package net.imagej.ops.morphology.fillHoles

net.imagej.ops.morphology.floodFill - package net.imagej.ops.morphology.floodFill

net.imagej.ops.morphology.open - package net.imagej.ops.morphology.open

net.imagej.ops.morphology.outline - package net.imagej.ops.morphology.outline

net.imagej.ops.morphology.thin - package net.imagej.ops.morphology.thin

net.imagej.ops.morphology.topHat - package net.imagej.ops.morphology.topHat

net.imagej.ops.run - package net.imagej.ops.run

net.imagej.ops.search - package net.imagej.ops.search

net.imagej.ops.segment - package net.imagej.ops.segment

net.imagej.ops.segment.detectJunctions - package net.imagej.ops.segment.detectJunctions

net.imagej.ops.segment.detectRidges - package net.imagej.ops.segment.detectRidges

net.imagej.ops.slice - package net.imagej.ops.slice

net.imagej.ops.special - package net.imagej.ops.special

net.imagej.ops.special.chain - package net.imagej.ops.special.chain

net.imagej.ops.special.computer - package net.imagej.ops.special.computer

net.imagej.ops.special.function - package net.imagej.ops.special.function

net.imagej.ops.special.hybrid - package net.imagej.ops.special.hybrid

net.imagej.ops.special.inplace - package net.imagej.ops.special.inplace

net.imagej.ops.stats - package net.imagej.ops.stats

net.imagej.ops.stats.regression.leastSquares - package net.imagej.ops.stats.regression.leastSquares

net.imagej.ops.thread - package net.imagej.ops.thread

net.imagej.ops.thread.chunker - package net.imagej.ops.thread.chunker

net.imagej.ops.threshold - package net.imagej.ops.threshold

net.imagej.ops.threshold.apply - package net.imagej.ops.threshold.apply

net.imagej.ops.threshold.huang - package net.imagej.ops.threshold.huang

net.imagej.ops.threshold.ij1 - package net.imagej.ops.threshold.ij1

net.imagej.ops.threshold.intermodes - package net.imagej.ops.threshold.intermodes

net.imagej.ops.threshold.isoData - package net.imagej.ops.threshold.isoData

net.imagej.ops.threshold.li - package net.imagej.ops.threshold.li

net.imagej.ops.threshold.localBernsen - package net.imagej.ops.threshold.localBernsen

net.imagej.ops.threshold.localContrast - package net.imagej.ops.threshold.localContrast

net.imagej.ops.threshold.localMean - package net.imagej.ops.threshold.localMean

net.imagej.ops.threshold.localMedian - package net.imagej.ops.threshold.localMedian

net.imagej.ops.threshold.localMidGrey - package net.imagej.ops.threshold.localMidGrey

net.imagej.ops.threshold.localNiblack - package net.imagej.ops.threshold.localNiblack

net.imagej.ops.threshold.localPhansalkar - package net.imagej.ops.threshold.localPhansalkar

net.imagej.ops.threshold.localSauvola - package net.imagej.ops.threshold.localSauvola

net.imagej.ops.threshold.maxEntropy - package net.imagej.ops.threshold.maxEntropy

net.imagej.ops.threshold.maxLikelihood - package net.imagej.ops.threshold.maxLikelihood

net.imagej.ops.threshold.mean - package net.imagej.ops.threshold.mean

net.imagej.ops.threshold.minError - package net.imagej.ops.threshold.minError

net.imagej.ops.threshold.minimum - package net.imagej.ops.threshold.minimum

net.imagej.ops.threshold.moments - package net.imagej.ops.threshold.moments

net.imagej.ops.threshold.otsu - package net.imagej.ops.threshold.otsu

net.imagej.ops.threshold.percentile - package net.imagej.ops.threshold.percentile

net.imagej.ops.threshold.renyiEntropy - package net.imagej.ops.threshold.renyiEntropy

net.imagej.ops.threshold.rosin - package net.imagej.ops.threshold.rosin

net.imagej.ops.threshold.shanbhag - package net.imagej.ops.threshold.shanbhag

net.imagej.ops.threshold.triangle - package net.imagej.ops.threshold.triangle

net.imagej.ops.threshold.yen - package net.imagej.ops.threshold.yen

net.imagej.ops.topology - package net.imagej.ops.topology

net.imagej.ops.topology.eulerCharacteristic - package net.imagej.ops.topology.eulerCharacteristic

net.imagej.ops.transform - package net.imagej.ops.transform

net.imagej.ops.transform.addDimensionView - package net.imagej.ops.transform.addDimensionView

net.imagej.ops.transform.collapseNumericView - package net.imagej.ops.transform.collapseNumericView

net.imagej.ops.transform.collapseRealView - package net.imagej.ops.transform.collapseRealView

net.imagej.ops.transform.collapseView - package net.imagej.ops.transform.collapseView

net.imagej.ops.transform.concatenateView - package net.imagej.ops.transform.concatenateView

net.imagej.ops.transform.crop - package net.imagej.ops.transform.crop

net.imagej.ops.transform.dropSingletonDimensionsView - package net.imagej.ops.transform.dropSingletonDimensionsView

net.imagej.ops.transform.extendBorderView - package net.imagej.ops.transform.extendBorderView

net.imagej.ops.transform.extendMirrorDoubleView - package net.imagej.ops.transform.extendMirrorDoubleView

net.imagej.ops.transform.extendMirrorSingleView - package net.imagej.ops.transform.extendMirrorSingleView

net.imagej.ops.transform.extendPeriodicView - package net.imagej.ops.transform.extendPeriodicView

net.imagej.ops.transform.extendRandomView - package net.imagej.ops.transform.extendRandomView

net.imagej.ops.transform.extendValueView - package net.imagej.ops.transform.extendValueView

net.imagej.ops.transform.extendView - package net.imagej.ops.transform.extendView

net.imagej.ops.transform.extendZeroView - package net.imagej.ops.transform.extendZeroView

net.imagej.ops.transform.flatIterableView - package net.imagej.ops.transform.flatIterableView

net.imagej.ops.transform.hyperSliceView - package net.imagej.ops.transform.hyperSliceView

net.imagej.ops.transform.interpolateView - package net.imagej.ops.transform.interpolateView

net.imagej.ops.transform.intervalView - package net.imagej.ops.transform.intervalView

net.imagej.ops.transform.invertAxisView - package net.imagej.ops.transform.invertAxisView

net.imagej.ops.transform.offsetView - package net.imagej.ops.transform.offsetView

net.imagej.ops.transform.permuteCoordinatesInverseView - package net.imagej.ops.transform.permuteCoordinatesInverseView

net.imagej.ops.transform.permuteCoordinatesView - package net.imagej.ops.transform.permuteCoordinatesView

net.imagej.ops.transform.permuteView - package net.imagej.ops.transform.permuteView

net.imagej.ops.transform.project - package net.imagej.ops.transform.project

net.imagej.ops.transform.rasterView - package net.imagej.ops.transform.rasterView

net.imagej.ops.transform.rotateView - package net.imagej.ops.transform.rotateView

net.imagej.ops.transform.scaleView - package net.imagej.ops.transform.scaleView

net.imagej.ops.transform.shearView - package net.imagej.ops.transform.shearView

net.imagej.ops.transform.stackView - package net.imagej.ops.transform.stackView

net.imagej.ops.transform.subsampleView - package net.imagej.ops.transform.subsampleView

net.imagej.ops.transform.translateView - package net.imagej.ops.transform.translateView

net.imagej.ops.transform.unshearView - package net.imagej.ops.transform.unshearView

net.imagej.ops.transform.zeroMinView - package net.imagej.ops.transform.zeroMinView

net.imagej.options - package net.imagej.options

net.imagej.overlay - package net.imagej.overlay

net.imagej.patcher - package net.imagej.patcher

net.imagej.plugins.commands.animation - package net.imagej.plugins.commands.animation

net.imagej.plugins.commands.app - package net.imagej.plugins.commands.app

net.imagej.plugins.commands.assign - package net.imagej.plugins.commands.assign

net.imagej.plugins.commands.assign.noisereduce - package net.imagej.plugins.commands.assign.noisereduce

net.imagej.plugins.commands.axispos - package net.imagej.plugins.commands.axispos

net.imagej.plugins.commands.binary - package net.imagej.plugins.commands.binary

net.imagej.plugins.commands.calculator - package net.imagej.plugins.commands.calculator

net.imagej.plugins.commands.correlate - package net.imagej.plugins.commands.correlate

net.imagej.plugins.commands.dataset - package net.imagej.plugins.commands.dataset

net.imagej.plugins.commands.debug - package net.imagej.plugins.commands.debug

net.imagej.plugins.commands.display - package net.imagej.plugins.commands.display

net.imagej.plugins.commands.display.interactive - package net.imagej.plugins.commands.display.interactive

net.imagej.plugins.commands.imglib - package net.imagej.plugins.commands.imglib

net.imagej.plugins.commands.io - package net.imagej.plugins.commands.io

net.imagej.plugins.commands.misc - package net.imagej.plugins.commands.misc

net.imagej.plugins.commands.neigh - package net.imagej.plugins.commands.neigh

net.imagej.plugins.commands.overlay - package net.imagej.plugins.commands.overlay

net.imagej.plugins.commands.restructure - package net.imagej.plugins.commands.restructure

net.imagej.plugins.commands.rotate - package net.imagej.plugins.commands.rotate

net.imagej.plugins.commands.typechange - package net.imagej.plugins.commands.typechange

net.imagej.plugins.commands.upload - package net.imagej.plugins.commands.upload

net.imagej.plugins.commands.zoom - package net.imagej.plugins.commands.zoom

net.imagej.plugins.tools - package net.imagej.plugins.tools

net.imagej.plugins.uploaders.ssh - package net.imagej.plugins.uploaders.ssh

net.imagej.plugins.uploaders.webdav - package net.imagej.plugins.uploaders.webdav

net.imagej.render - package net.imagej.render

net.imagej.roi - package net.imagej.roi

net.imagej.sampler - package net.imagej.sampler

net.imagej.server - package net.imagej.server

net.imagej.server.commands - package net.imagej.server.commands

net.imagej.server.console - package net.imagej.server.console

net.imagej.server.converter - package net.imagej.server.converter

net.imagej.server.external - package net.imagej.server.external

net.imagej.server.health - package net.imagej.server.health

net.imagej.server.mixins - package net.imagej.server.mixins

net.imagej.server.resources - package net.imagej.server.resources

net.imagej.server.services - package net.imagej.server.services

net.imagej.server.utilities - package net.imagej.server.utilities

net.imagej.space - package net.imagej.space

net.imagej.table - package net.imagej.table

net.imagej.tensorflow - package net.imagej.tensorflow

net.imagej.tensorflow.demo - package net.imagej.tensorflow.demo

net.imagej.tensorflow.ui - package net.imagej.tensorflow.ui

net.imagej.tensorflow.util - package net.imagej.tensorflow.util

net.imagej.types - package net.imagej.types

net.imagej.ui - package net.imagej.ui

net.imagej.ui.awt - package net.imagej.ui.awt

net.imagej.ui.dnd - package net.imagej.ui.dnd

net.imagej.ui.swing - package net.imagej.ui.swing

net.imagej.ui.swing.commands - package net.imagej.ui.swing.commands

net.imagej.ui.swing.mdi.viewer - package net.imagej.ui.swing.mdi.viewer

net.imagej.ui.swing.overlay - package net.imagej.ui.swing.overlay

net.imagej.ui.swing.sdi.viewer - package net.imagej.ui.swing.sdi.viewer

net.imagej.ui.swing.tools - package net.imagej.ui.swing.tools

net.imagej.ui.swing.updater - package net.imagej.ui.swing.updater

net.imagej.ui.swing.viewer.image - package net.imagej.ui.swing.viewer.image

net.imagej.ui.swing.widget - package net.imagej.ui.swing.widget

net.imagej.ui.viewer.image - package net.imagej.ui.viewer.image

net.imagej.units - package net.imagej.units

net.imagej.updater - package net.imagej.updater

net.imagej.updater.action - package net.imagej.updater.action

net.imagej.updater.util - package net.imagej.updater.util

net.imagej.util - package net.imagej.util

net.imagej.widget - package net.imagej.widget

NetrcParser - Class in net.imagej.plugins.uploaders.webdav

A helper class to obtain credentials stored in $HOME/.netrc

NetrcParser() - Constructor for class net.imagej.plugins.uploaders.webdav.NetrcParser

NetrcParser(URL) - Constructor for class net.imagej.plugins.uploaders.webdav.NetrcParser

NetrcParser.Credentials - Class in net.imagej.plugins.uploaders.webdav

neverRemind() - Static method in class net.imagej.updater.UpToDate

NewImage & NativeType> - Class in net.imagej.plugins.commands.io

Creates a new Dataset.

NewImage() - Constructor for class net.imagej.plugins.commands.io.NewImage

newImageJ1(boolean) - Method in class net.imagej.patcher.LegacyEnvironment

Initializes a new ImageJ 1.x instance.

newPluginClassLoader(ClassLoader) - Method in class imagej.patcher.LegacyHooks

Deprecated.

Extension point to run after a new PluginClassLoader was initialized.

newPluginClassLoader(ClassLoader) - Method in class net.imagej.patcher.LegacyHooks

Extension point to run after a new PluginClassLoader was initialized.

newText(String) - Method in class net.imagej.ui.swing.updater.ConflictDialog

newText(String, SimpleAttributeSet) - Method in class net.imagej.ui.swing.updater.ConflictDialog

next() - Method in class net.imagej.ops.image.integral.IntegralCursor

next() - Method in class net.imagej.updater.FilesCollection.FilteredIterator

NextPowerOfTwo - Class in net.imagej.ops.filter.fftSize

NextPowerOfTwo() - Constructor for class net.imagej.ops.filter.fftSize.NextPowerOfTwo

nextPowerOfTwo(long) - Static method in class net.imagej.ops.filter.fftSize.NextPowerOfTwo

nextSmooth(int) - Static method in class net.imagej.ops.filter.fftSize.NextSmoothNumber

nextSmooth(int, int, int) - Static method in class net.imagej.ops.filter.fftSize.NextSmoothNumber

NextSmoothNumber - Class in net.imagej.ops.filter.fftSize

A class to determine the next k-smooth number (i.e.

NextSmoothNumber() - Constructor for class net.imagej.ops.filter.fftSize.NextSmoothNumber

noConnection() - Static method in class net.imagej.updater.util.HTTPSUtil

NoiseAdder<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign

Fills an output Dataset by applying random noise to an input Dataset.

NoiseAdder(Dataset, Overlay, Position) - Constructor for class net.imagej.plugins.commands.assign.NoiseAdder

Constructor - takes an input Dataset as the baseline data to compute perturbed values from.

NoiseReductionAdaptiveMedian> - Class in net.imagej.plugins.commands.assign.noisereduce

Reduces noise in an image by applying an adaptive median algorithm.

NoiseReductionAdaptiveMedian() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionAdaptiveMedian

NoiseReductionAlphaTrimmedMean<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce

Reduces noise in an image by replacing each pixel with the calculated alpha trimmed mean of neighboring values.

NoiseReductionAlphaTrimmedMean() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionAlphaTrimmedMean

NoiseReductionContraharmonicMean<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce

Reduces noise in an image by replacing each pixel with the calculated contraharmonic mean of neighboring values.

NoiseReductionContraharmonicMean() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionContraharmonicMean

NoiseReductionGeometricMean<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce

Reduces noise in an image by replacing each pixel with the calculated geometric mean of neighboring values.

NoiseReductionGeometricMean() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionGeometricMean

NoiseReductionHarmonicMean<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce

Reduces noise in an image by replacing each pixel with the calculated harmonic mean of neighboring values.

NoiseReductionHarmonicMean() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionHarmonicMean

NoiseReductionMax<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce

Reduces noise in an image by replacing each pixel with the calculated max of neighboring values.

NoiseReductionMax() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMax

NoiseReductionMean<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce

Reduces noise in an image by replacing each pixel with the calculated arithmetic mean of neighboring values.

NoiseReductionMean() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMean

NoiseReductionMedian<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce

Reduces noise in an image by replacing each pixel with the calculated median of neighboring values.

NoiseReductionMedian() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMedian

NoiseReductionMidpoint<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce

Reduces noise in an image by replacing each pixel with the calculated midpoint value of neighboring values.

NoiseReductionMidpoint() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMidpoint

NoiseReductionMin<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce

Reduces noise in an image by replacing each pixel with the calculated min of neighboring values.

NoiseReductionMin() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMin

NoiseReductionTrimmedMean<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce

Reduces noise in an image by replacing each pixel with the calculated trimmed mean of neighboring values.

NoiseReductionTrimmedMean() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionTrimmedMean

noLineDecoration - Static variable in class net.imagej.options.OptionsOverlay

noLineStyle - Static variable in class net.imagej.options.OptionsOverlay

NonCirculantFirstGuess,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>> - Class in net.imagej.ops.deconvolve

Calculate non-circulant first guess.

NonCirculantFirstGuess() - Constructor for class net.imagej.ops.deconvolve.NonCirculantFirstGuess

NonCirculantNormalizationFactor,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>> - Class in net.imagej.ops.deconvolve

Calculate non-circulant normalization factor.

NonCirculantNormalizationFactor() - Constructor for class net.imagej.ops.deconvolve.NonCirculantNormalizationFactor

noPluginClassLoader() - Method in class net.imagej.patcher.LegacyEnvironment

Forces ImageJ 1.x to use the same ClassLoader for plugins as for ImageJ 1.x itself.

norm(int) - Static method in class net.imagej.ops.stats.IntegralMean

Computes L1 norm of the position of an IntegralCursor.

normal - Variable in class net.imagej.ui.swing.updater.ConflictDialog

normal - Variable in class net.imagej.ui.swing.updater.DiffView

normal(String) - Method in class net.imagej.ui.swing.updater.DiffView

Add some plain text.

normal(String) - Method in class net.imagej.ui.swing.updater.FileDetails

normalCursor - Variable in class net.imagej.ui.swing.updater.DiffFile

normalCursor - Variable in class net.imagej.ui.swing.updater.DiffView

normalizationFactor(RandomAccessibleInterval<O>, Dimensions, Dimensions, RandomAccessibleInterval<O>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

normalize(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.image.ImageNamespace

normalize(IterableInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.image.ImageNamespace

normalize(IterableInterval<T>, IterableInterval<T>, T, T) - Method in class net.imagej.ops.image.ImageNamespace

normalize(IterableInterval<T>, IterableInterval<T>, T, T, T) - Method in class net.imagej.ops.image.ImageNamespace

normalize(IterableInterval<T>, IterableInterval<T>, T, T, T, T) - Method in class net.imagej.ops.image.ImageNamespace

normalize(IterableInterval<T>) - Method in class net.imagej.ops.image.ImageNamespace

normalize(IterableInterval<T>, T) - Method in class net.imagej.ops.image.ImageNamespace

normalize(IterableInterval<T>, T, T) - Method in class net.imagej.ops.image.ImageNamespace

normalize(IterableInterval<T>, T, T, T) - Method in class net.imagej.ops.image.ImageNamespace

normalize(IterableInterval<T>, T, T, T, T) - Method in class net.imagej.ops.image.ImageNamespace

normalize(IterableInterval<T>, T, T, T, T, boolean) - Method in class net.imagej.ops.image.ImageNamespace

normalizedCentralMoment02(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

normalizedCentralMoment02(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

normalizedCentralMoment03(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

normalizedCentralMoment03(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

normalizedCentralMoment11(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

normalizedCentralMoment11(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

normalizedCentralMoment12(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

normalizedCentralMoment12(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

normalizedCentralMoment20(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

normalizedCentralMoment20(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

normalizedCentralMoment21(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

normalizedCentralMoment21(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

normalizedCentralMoment30(IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

normalizedCentralMoment30(O, IterableInterval) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace

NormalizeIIComputer<T extends RealType<T>> - Class in net.imagej.ops.image.normalize

Normalizes an IterableInterval given its minimum and maximum to another range defined by minimum and maximum.

NormalizeIIComputer() - Constructor for class net.imagej.ops.image.normalize.NormalizeIIComputer

NormalizeIIFunction<T extends RealType<T>> - Class in net.imagej.ops.image.normalize

Normalizes an IterableInterval given its minimum and maximum to another range defined by minimum and maximum.

NormalizeIIFunction() - Constructor for class net.imagej.ops.image.normalize.NormalizeIIFunction

normalizeScale(O, I) - Method in class net.imagej.ops.convert.ConvertNamespace

NormalizeScaleRealTypes,O extends RealType<O>> - Class in net.imagej.ops.convert.normalizeScale

Scales input values to their corresponding value in the output type range based on the min/max values of an IterableInterval not the range of the input type.

NormalizeScaleRealTypes() - Constructor for class net.imagej.ops.convert.normalizeScale.NormalizeScaleRealTypes

normals() - Method in class net.imagej.mesh.nio.BufferMesh.Triangles

normals() - Method in class net.imagej.mesh.nio.BufferMesh.Vertices

not(Object) - Method in class net.imagej.ops.eval.OpEvaluator

Not() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.Not

not(boolean) - Method in class net.imagej.ops.logic.LogicNamespace

not(T) - Method in class net.imagej.ops.logic.LogicNamespace

not(T, T) - Method in class net.imagej.ops.logic.LogicNamespace

not(Overlay) - Method in class net.imagej.overlay.CompositeOverlay

not(FilesCollection.Filter) - Method in class net.imagej.updater.FilesCollection

notebook() - Method in class net.imagej.ImageJ

Gets this application context's NotebookService.

NotebookService - Interface in net.imagej.notebook

Interface for services which provide handy methods for working with scientific notebook software (e.g., Beaker Notebook).

NotebookService.ValueScaling - Enum in net.imagej.notebook

Strategy to use for scaling the image intensity values.

NotebookTable - Class in net.imagej.notebook

A table data structure which displays nicely in a notebook.

NotebookTable() - Constructor for class net.imagej.notebook.NotebookTable

notEqual(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator

notEqual(boolean, boolean) - Method in class net.imagej.ops.logic.LogicNamespace

notEqual(int, int) - Method in class net.imagej.ops.logic.LogicNamespace

notEqual(long, long) - Method in class net.imagej.ops.logic.LogicNamespace

notEqual(float, float) - Method in class net.imagej.ops.logic.LogicNamespace

notEqual(double, double) - Method in class net.imagej.ops.logic.LogicNamespace

notEqual(T, Object, Object) - Method in class net.imagej.ops.logic.LogicNamespace

notHidden() - Method in class net.imagej.updater.FilesCollection

Notice(String) - Constructor for class net.imagej.updater.Conflicts.Notice

notSerialized(Class<?>) - Method in class net.imagej.server.services.DefaultJsonService

now() - Static method in class net.imagej.updater.UpToDate

nullary(OpEnvironment, Class<? extends Op>, Class<O>, Object...) - Static method in class net.imagej.ops.special.computer.Computers

Gets the best NullaryComputerOp implementation for the given types and arguments, populating its inputs.

nullary(OpEnvironment, Class<? extends Op>, O, Object...) - Static method in class net.imagej.ops.special.computer.Computers

Gets the best NullaryComputerOp implementation for the given types and arguments, populating its inputs.

nullary(OpEnvironment, Class<? extends Op>, Class<O>, Object...) - Static method in class net.imagej.ops.special.function.Functions

Gets the best NullaryFunctionOp implementation for the given types and arguments, populating its inputs.

nullaryCF(OpEnvironment, Class<? extends Op>, Class<O>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids

Gets the best NullaryHybridCF implementation for the given types and arguments, populating its inputs.

nullaryCF(OpEnvironment, Class<? extends Op>, O, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids

Gets the best NullaryHybridCF implementation for the given types and arguments, populating its inputs.

NullaryComputerOp<O> - Interface in net.imagej.ops.special.computer

A nullary computer computes a result, storing it into the specified output reference.

NullaryFunctionOp<O> - Interface in net.imagej.ops.special.function

A nullary function calculates a result, returning it as a new object.

NullaryHybridCF<O> - Interface in net.imagej.ops.special.hybrid

A hybrid nullary operation which can be used as a NullaryComputerOp or NullaryFunctionOp.

NullaryNumericTypeMath - Class in net.imagej.ops.math

Nullary Ops of the math namespace which operate on NumericTypes.

NullaryNumericTypeMath.Assign<T extends Type<T>> - Class in net.imagej.ops.math

Sets the output to a constant.

NullaryNumericTypeMath.Zero<T extends NumericType<T>> - Class in net.imagej.ops.math

Sets the output to zero.

NullaryOp<O> - Interface in net.imagej.ops.special

A nullary operation computes a result in a vacuum, without any input values.

NullaryOutputFactory<O> - Interface in net.imagej.ops.special

Factory which creates a typed output object.

numberfieldIndex - Variable in class imagej.patcher.HeadlessGenericDialog

Deprecated.

numberfieldIndex - Variable in class net.imagej.patcher.HeadlessGenericDialog

numberOfElements - Variable in class net.imagej.ops.thread.chunker.AbstractChunker

Total number of elements to be processed

numbers - Variable in class imagej.patcher.HeadlessGenericDialog

Deprecated.

numbers - Variable in class net.imagej.patcher.HeadlessGenericDialog

NumberToNumericTypeConverter> - Class in net.imagej.server.converter

Abstract class for Converters that convert a Number to a NumericType.

NumberToNumericTypeConverter() - Constructor for class net.imagej.server.converter.NumberToNumericTypeConverter

NumberToNumericTypeConverters - Class in net.imagej.server.converter

Converters that convert a Number to a NumericType.

NumberToNumericTypeConverters.DoubleToDoubleTypeConverter - Class in net.imagej.server.converter

NumberToNumericTypeConverters.FloatToFloatTypeConverter - Class in net.imagej.server.converter

NumberToNumericTypeConverters.IntegerToIntTypeConverter - Class in net.imagej.server.converter

NumberToNumericTypeConverters.LongToLongTypeConverter - Class in net.imagej.server.converter

numDimensions() - Method in class net.imagej.DefaultDataset

numDimensions() - Method in class net.imagej.display.AbstractDataView

numDimensions() - Method in class net.imagej.display.DefaultImageDisplay

numDimensions() - Method in class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper

numDimensions() - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

numDimensions() - Method in interface net.imagej.legacy.convert.roi.IJRoiWrapper

numDimensions() - Method in interface net.imagej.mesh.Vertex

numDimensions() - Method in class net.imagej.omero.legacy.text.OMEROText

numDimensions() - Method in class net.imagej.omero.legacy.text.TextRoiWrapper

numDimensions() - Method in class net.imagej.omero.roi.AbstractOMERORealMaskRealInterval

numDimensions() - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex

numDimensions() - Method in class net.imagej.overlay.AbstractOverlay

numDimensions() - Method in class net.imagej.overlay.AngleOverlay

numDimensions() - Method in class net.imagej.overlay.LineOverlay

numDimensions() - Method in class net.imagej.overlay.PointOverlay

numDimensions() - Method in class net.imagej.Position

Returns the number of dimensions within the Position.

numDimensions() - Method in class net.imagej.space.AbstractAnnotatedSpace

numDimensions() - Method in class net.imagej.space.CombinedSpace

numDimensions() - Method in class net.imagej.table.ResultsImg

numDims() - Method in interface net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation

numDims() - Method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation2D

numDims() - Method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation3D

numElements() - Method in class net.imagej.Extents

Returns the total number of elements spanned by the parent Extents.

numeric(ImgPlus<?>) - Method in class net.imagej.DefaultImgPlusService

numeric(ImgPlus<?>) - Method in interface net.imagej.ImgPlusService

Given an ImgPlus of unknown type this returns a typed ImgPlus of type NumericType.

NumericTypeBinaryMath - Class in net.imagej.ops.math

Generated arithmetic ops with ImgLib2 NumericTypes.

NumericTypeBinaryMath.Add<T extends NumericType<T>> - Class in net.imagej.ops.math

Op that adds (+) two NumericType values.

NumericTypeBinaryMath.Divide<T extends NumericType<T>> - Class in net.imagej.ops.math

Op that divides (/) two NumericType values.

NumericTypeBinaryMath.Multiply<T extends NumericType<T>> - Class in net.imagej.ops.math

Op that multiplies (*) two NumericType values.

NumericTypeBinaryMath.Subtract<T extends NumericType<T>> - Class in net.imagej.ops.math

Op that subtracts (-) two NumericType values.

numGreyLevels - Variable in class net.imagej.ops.features.haralick.AbstractHaralickFeature

numVars() - Method in class net.imagej.axis.VariableAxis

Gets the number of variables with assigned values.

numVertices() - Method in class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper

numVertices() - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape

nValues - Variable in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata

nx(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles

nx(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

nx() - Method in interface net.imagej.mesh.Triangle

X coordinate of triangle's normal, as a double.

nx(long) - Method in interface net.imagej.mesh.Triangles

X coordinate of triangle's normal, as a double.

nx() - Method in interface net.imagej.mesh.Vertex

X coordinate of vertex normal, as a double.

nx(long) - Method in interface net.imagej.mesh.Vertices

X coordinate of vertex normal, as a double.

nxf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles

nxf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

nxf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles

nxf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices

nxf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Triangles

nxf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices

nxf() - Method in interface net.imagej.mesh.Triangle

X coordinate of triangle's normal, as a float.

nxf(long) - Method in interface net.imagej.mesh.Triangles

X coordinate of triangle's normal, as a float.

nxf() - Method in interface net.imagej.mesh.Vertex

X coordinate of vertex normal, as a float.

nxf(long) - Method in interface net.imagej.mesh.Vertices

X coordinate of vertex normal, as a float.

ny(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles

ny(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

ny() - Method in interface net.imagej.mesh.Triangle

Y coordinate of triangle's normal, as a double.

ny(long) - Method in interface net.imagej.mesh.Triangles

Y coordinate of triangle's normal, as a double.

ny() - Method in interface net.imagej.mesh.Vertex

Y coordinate of vertex normal, as a double.

ny(long) - Method in interface net.imagej.mesh.Vertices

Y coordinate of vertex normal, as a double.

nyf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles

nyf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

nyf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles

nyf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices

nyf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Triangles

nyf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices

nyf() - Method in interface net.imagej.mesh.Triangle

Y coordinate of triangle's normal, as a float.

nyf(long) - Method in interface net.imagej.mesh.Triangles

Y coordinate of triangle's normal, as a float.

nyf() - Method in interface net.imagej.mesh.Vertex

Y coordinate of vertex normal, as a float.

nyf(long) - Method in interface net.imagej.mesh.Vertices

Y coordinate of vertex normal, as a float.

nz(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles

nz(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

nz() - Method in interface net.imagej.mesh.Triangle

Z coordinate of triangle's normal, as a double.

nz(long) - Method in interface net.imagej.mesh.Triangles

Z coordinate of triangle's normal, as a double.

nz() - Method in interface net.imagej.mesh.Vertex

Z coordinate of vertex normal, as a double.

nz(long) - Method in interface net.imagej.mesh.Vertices

Z coordinate of vertex normal, as a double.

nzf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles

nzf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

nzf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles

nzf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices

nzf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Triangles

nzf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices

nzf() - Method in interface net.imagej.mesh.Triangle

Z coordinate of triangle's normal, as a float.

nzf(long) - Method in interface net.imagej.mesh.Triangles

Z coordinate of triangle's normal, as a float.

nzf() - Method in interface net.imagej.mesh.Vertex

Z coordinate of vertex normal, as a float.

nzf(long) - Method in interface net.imagej.mesh.Vertices

Z coordinate of vertex normal, as a float.

O

object(Class<T>) - Method in class net.imagej.ops.create.CreateNamespace

ObjectInfo - Interface in net.imagej.server.services

Wrapper for an Object with some metadata.

ObjectsEqual() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.ObjectsEqual

ObjectService - Interface in net.imagej.server.services

ObjectsNotEqual() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.ObjectsNotEqual

ObjectsResource - Class in net.imagej.server.resources

Server resource for managing data structures that could not be easily handled with JSON,

ObjectsResource() - Constructor for class net.imagej.server.resources.ObjectsResource

offset() - Method in class net.imagej.units.LinearCalibrator

offsetOfFirstDiff(File, File) - Static method in class net.imagej.updater.Diff

Determine whether two files' contents differ.

offsetView(RandomAccessible<T>, long...) - Method in class net.imagej.ops.transform.TransformNamespace

Translate such that pixel at offset in randomAccessible is at the origin in the resulting view.

offsetView(RandomAccessible<T>, Interval) - Method in class net.imagej.ops.transform.TransformNamespace

Define an interval on a RandomAccessible and translate it such that the min corner is at the origin.

offsetView(RandomAccessible<T>, long[], long...) - Method in class net.imagej.ops.transform.TransformNamespace

Define an interval on a RandomAccessible and translate it such that the min corner is at the origin.

OffsetViewInterval<T> - Class in net.imagej.ops.transform.offsetView

Wraps the Views.offsetInterval(RandomAccessible, Interval) method.

OffsetViewInterval() - Constructor for class net.imagej.ops.transform.offsetView.OffsetViewInterval

OffsetViewOriginSize<T> - Class in net.imagej.ops.transform.offsetView

Wraps the Views.offsetInterval(RandomAccessible, long[], long[]) method.

OffsetViewOriginSize() - Constructor for class net.imagej.ops.transform.offsetView.OffsetViewOriginSize

ok - Variable in class net.imagej.ui.swing.updater.ConflictDialog

OMERO_ROI_C - Static variable in class net.imagej.omero.legacy.LegacyOMEROROIService

OMERO_ROI_T - Static variable in class net.imagej.omero.legacy.LegacyOMEROROIService

OMERO_ROI_Z - Static variable in class net.imagej.omero.legacy.LegacyOMEROROIService

OMEROCommand - Class in net.imagej.omero

An ImageJ command for interacting with an OMERO server.

OMEROCommand() - Constructor for class net.imagej.omero.OMEROCommand

OMEROEllipse - Interface in net.imagej.omero.roi.ellipse

An Ellipsoid which wraps an OMERO ellipse Roi.

OMEROEllipseToOvalRoi() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROEllipseToOvalRoi

OMEROEllipseUnwrapper - Class in net.imagej.omero.roi.ellipse

Unwraps an OMEROEllipse.

OMEROEllipseUnwrapper() - Constructor for class net.imagej.omero.roi.ellipse.OMEROEllipseUnwrapper

OMEROFormat - Class in net.imagej.omero

A SCIFIO Format which provides read/write access to pixels on an OMERO server.

OMEROFormat() - Constructor for class net.imagej.omero.OMEROFormat

OMEROFormat.Checker - Class in net.imagej.omero

OMEROFormat.Metadata - Class in net.imagej.omero

OMEROFormat.Parser - Class in net.imagej.omero

OMEROFormat.Reader - Class in net.imagej.omero

OMEROFormat.Writer - Class in net.imagej.omero

OMEROLine - Interface in net.imagej.omero.roi.line

A Line which wraps an OMERO line Roi.

OMEROLineToIJLine() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROLineToIJLine

OMEROLineUnwrapper - Class in net.imagej.omero.roi.line

Unwraps an OMEROLine.

OMEROLineUnwrapper() - Constructor for class net.imagej.omero.roi.line.OMEROLineUnwrapper

OMEROLocation - Class in net.imagej.omero

Location pointing at an OMERO server.

OMEROLocation(String, int, String, String) - Constructor for class net.imagej.omero.OMEROLocation

OMEROLocation(String, int, String, String, boolean) - Constructor for class net.imagej.omero.OMEROLocation

OMEROLocation(String, int, String) - Constructor for class net.imagej.omero.OMEROLocation

OMEROLocation(Map<String, Object>) - Constructor for class net.imagej.omero.OMEROLocation

OMEROMask - Interface in net.imagej.omero.roi.mask

A RealMaskRealInterval which wraps an OMERO Mask Roi.

OMEROMaskToImageRoi() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROMaskToImageRoi

OMEROMaskUnwrapper - Class in net.imagej.omero.roi.mask

Unwraps an OMEROMask.

OMEROMaskUnwrapper() - Constructor for class net.imagej.omero.roi.mask.OMEROMaskUnwrapper

OMEROMaskWrapper - Class in net.imagej.omero.legacy.mask

Wraps an OMEROMask as a ImageRoi.

OMEROMaskWrapper(OMEROMask) - Constructor for class net.imagej.omero.legacy.mask.OMEROMaskWrapper

OMEROMaskWrapperToOMEROMask() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.OMEROMaskWrapperToOMEROMask

OMEROPoint - Interface in net.imagej.omero.roi.point

A PointMask which wraps an OMERO point roi.

OMEROPointToPointRoi() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPointToPointRoi

OMEROPointUnwrapper - Class in net.imagej.omero.roi.point

Unwraps an OMEROPoint.

OMEROPointUnwrapper() - Constructor for class net.imagej.omero.roi.point.OMEROPointUnwrapper

OMEROPolygon - Interface in net.imagej.omero.roi.polyshape

A Polygon2D which wraps an OMERO polygon Roi.

OMEROPolygonToPolygonRoi() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolygonToPolygonRoi

OMEROPolygonUnwrapper - Class in net.imagej.omero.roi.polyshape

Unwraps an OMEROPolygon.

OMEROPolygonUnwrapper() - Constructor for class net.imagej.omero.roi.polyshape.OMEROPolygonUnwrapper

OMEROPolyline - Interface in net.imagej.omero.roi.polyshape

A Polyline which wraps an OMERO polyline Roi

OMEROPolylineToPolygonRoi() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolylineToPolygonRoi

OMEROPolylineUnwrapper - Class in net.imagej.omero.roi.polyshape

Unwraps an OMEROPolyline.

OMEROPolylineUnwrapper() - Constructor for class net.imagej.omero.roi.polyshape.OMEROPolylineUnwrapper

OMEROPolyshape<SD extends ShapeData> - Interface in net.imagej.omero.roi.polyshape

A Polyshape which wraps an OMERO ROI.

OMERORealMask<S extends ShapeData> - Interface in net.imagej.omero.roi

RealMask wrapper for OMERO ShapeData object.

OMERORealMaskRealInterval<S extends ShapeData> - Interface in net.imagej.omero.roi

RealMaskRealInterval wrapper for OMERO ShapeData object.

OMERORealMaskToIJROI - Class in net.imagej.omero.legacy.convert

Converters for OMERORealMask to Roi.

OMERORealMaskToIJROI.AbstractOMERORealMaskToIJRoi<O extends OMERORealMask<?>,R extends Roi> - Class in net.imagej.omero.legacy.convert

Abstract base class for converting OMERORealMask to Roi.

OMERORealMaskToIJROI.OMEROEllipseToOvalRoi - Class in net.imagej.omero.legacy.convert

Converts OMEROEllipse to OvalRoi.

OMERORealMaskToIJROI.OMEROLineToIJLine - Class in net.imagej.omero.legacy.convert

Converts OMEROLine to Line.

OMERORealMaskToIJROI.OMEROMaskToImageRoi - Class in net.imagej.omero.legacy.convert

Converts OMEROMask to ImageRoi.

OMERORealMaskToIJROI.OMEROPointToPointRoi - Class in net.imagej.omero.legacy.convert

Converts OMEROPoint to PointRoi.

OMERORealMaskToIJROI.OMEROPolygonToPolygonRoi - Class in net.imagej.omero.legacy.convert

Converts OMEROPolygon to PolygonRoi.

OMERORealMaskToIJROI.OMEROPolylineToPolygonRoi - Class in net.imagej.omero.legacy.convert

Converts OMEROPolyline to PolygonRoi.

OMERORealMaskToIJROI.OMERORectangleToRoi - Class in net.imagej.omero.legacy.convert

Converts OMERORectangle to Roi.

OMERORealMaskToIJROI.OMEROTextToTextRoi - Class in net.imagej.omero.legacy.convert

Converts OMEROText to TextRoi.

OMERORectangle - Interface in net.imagej.omero.roi.rectangle

A Box which wraps an OMERO rectangle Roi.

OMERORectangleToRoi() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMERORectangleToRoi

OMERORectangleUnwrapper - Class in net.imagej.omero.roi.rectangle

Unwraps an OMERORectangle.

OMERORectangleUnwrapper() - Constructor for class net.imagej.omero.roi.rectangle.OMERORectangleUnwrapper

OMERORef - Enum in net.imagej.omero

OMERORefColumn - Class in net.imagej.omero

Wrapper for OMERO reference columns (i.e.

OMERORefColumn(OMERORef) - Constructor for class net.imagej.omero.OMERORefColumn

OMERORefColumn(String, OMERORef) - Constructor for class net.imagej.omero.OMERORefColumn

OMEROROICollection - Interface in net.imagej.omero.roi

Wraps an OMERO ROIData object.

OMEROROICollectionToROIData - Class in net.imagej.omero.roi

Converts an OMEROROICollection to ROIData.

OMEROROICollectionToROIData() - Constructor for class net.imagej.omero.roi.OMEROROICollectionToROIData

OMEROROIElement - Interface in net.imagej.omero.roi

Wraps an OMERORealMask which can be projected into a given space.

OMEROROIElementToROIData - Class in net.imagej.omero.roi

Converts an OMEROROIElement to ROIData.

OMEROROIElementToROIData() - Constructor for class net.imagej.omero.roi.OMEROROIElementToROIData

OMEROROIProjector,O extends OMERORealMask<?>> - Interface in net.imagej.omero.roi.project

Projects a OMERORealMask into the given space.

OMEROService - Interface in net.imagej.omero

Interface for ImageJ services that manage OMERO data conversion.

OMEROSession - Interface in net.imagej.omero

OMEROText - Class in net.imagej.omero.legacy.text

Wraps an OMERO TextData as a RealMaskRealInterval.

OMEROText(TextData) - Constructor for class net.imagej.omero.legacy.text.OMEROText

OMEROTextToTextRoi() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROTextToTextRoi

OMEROTextUnwrapper - Class in net.imagej.omero.legacy.text

Unwraps an OMEROText.

OMEROTextUnwrapper() - Constructor for class net.imagej.omero.legacy.text.OMEROTextUnwrapper

OMEROTextWrapper - Class in net.imagej.omero.legacy.text

Wraps an OMEROText as an ImageJ 1.x ROI.

OMEROTextWrapper(OMEROText) - Constructor for class net.imagej.omero.legacy.text.OMEROTextWrapper

OMEROToImageJEllipse - Class in net.imagej.omero.roi.ellipse

Converts an OMERO EllipseData to OMEROEllipse.

OMEROToImageJEllipse() - Constructor for class net.imagej.omero.roi.ellipse.OMEROToImageJEllipse

OMEROToImageJLine - Class in net.imagej.omero.roi.line

Converts an OMERO LineData to OMEROLine.

OMEROToImageJLine() - Constructor for class net.imagej.omero.roi.line.OMEROToImageJLine

OMEROToImageJMask - Class in net.imagej.omero.roi.mask

Converts an OMERO MaskData to OMEROMask.

OMEROToImageJMask() - Constructor for class net.imagej.omero.roi.mask.OMEROToImageJMask

OMEROToImageJPoint - Class in net.imagej.omero.roi.point

Converts an OMERO PointData to OMEROPoint.

OMEROToImageJPoint() - Constructor for class net.imagej.omero.roi.point.OMEROToImageJPoint

OMEROToImageJPolygon - Class in net.imagej.omero.roi.polyshape

Converts an OMERO PolygonData to Polygon2D.

OMEROToImageJPolygon() - Constructor for class net.imagej.omero.roi.polyshape.OMEROToImageJPolygon

OMEROToImageJPolyline - Class in net.imagej.omero.roi.polyshape

Converts an OMERO PolylineData to OMEROPolyline.

OMEROToImageJPolyline() - Constructor for class net.imagej.omero.roi.polyshape.OMEROToImageJPolyline

OMEROToImageJRectangle - Class in net.imagej.omero.roi.rectangle

Converts an OMERO RectangleData to OMERORectangle.

OMEROToImageJRectangle() - Constructor for class net.imagej.omero.roi.rectangle.OMEROToImageJRectangle

OMEROToImageJText - Class in net.imagej.omero.legacy.text

Converts an OMERO TextData to OMEROText.

OMEROToImageJText() - Constructor for class net.imagej.omero.legacy.text.OMEROToImageJText

OMEROUtils - Class in net.imagej.omero

Utility class for working with OMERO data structures.

OMEROZTCProjectedRealMask - Class in net.imagej.omero.roi.project

Represents a RealMask positioned at a specific Z, T, and C.

OMEROZTCProjectedRealMask(RealMask, int, int, int) - Constructor for class net.imagej.omero.roi.project.OMEROZTCProjectedRealMask

OMEROZTCProjectedRealMaskRealInterval - Class in net.imagej.omero.roi.project

Represents a RealMaskRealInterval positioned at a specific Z, T, and C.

OMEROZTCProjectedRealMaskRealInterval(RealMaskRealInterval, int, int, int) - Constructor for class net.imagej.omero.roi.project.OMEROZTCProjectedRealMaskRealInterval

OMEROZTCProjectedRealMaskToShapeData - Class in net.imagej.omero.roi.project

Converts an OMEROZTCProjectedRealMask to ShapeData, preserving its Z, T, and C positions.

OMEROZTCProjectedRealMaskToShapeData() - Constructor for class net.imagej.omero.roi.project.OMEROZTCProjectedRealMaskToShapeData

onDataViewUpdatedEvent(DataViewUpdatedEvent) - Method in class net.imagej.ui.swing.viewer.image.DatasetFigureView

oneOf(FileObject.Action...) - Method in class net.imagej.updater.FilesCollection

oneOf(FileObject.Status...) - Method in class net.imagej.updater.FilesCollection

onEvent(KyPressedEvent) - Method in class net.imagej.animation.DefaultAnimationService

Stops animation if ESC key is pressed.

onEvent(DisplayDeletedEvent) - Method in class net.imagej.animation.DefaultAnimationService

Stops animation if display has been deleted.

onEvent(DataRestructuredEvent) - Method in class net.imagej.animation.DefaultAnimationService

Stops animation of displays whose Data have been restructured.

onEvent(DatasetTypeChangedEvent) - Method in class net.imagej.display.DefaultDatasetView

onEvent(DatasetRGBChangedEvent) - Method in class net.imagej.display.DefaultDatasetView

onEvent(DatasetUpdatedEvent) - Method in class net.imagej.display.DefaultDatasetView

onEvent(DataRestructuredEvent) - Method in class net.imagej.display.DefaultImageDisplay

onEvent(DataUpdatedEvent) - Method in class net.imagej.display.DefaultImageDisplay

onEvent(DisplayDeletedEvent) - Method in class net.imagej.display.DefaultImageDisplay

onEvent(DisplayCreatedEvent) - Method in class net.imagej.display.DefaultWindowService

onEvent(DisplayActivatedEvent) - Method in class net.imagej.display.DefaultWindowService

onEvent(DisplayDeletedEvent) - Method in class net.imagej.display.DefaultWindowService

onEvent(KyPressedEvent) - Method in class net.imagej.plugins.commands.correlate.ShadowsDemo

onEvent(DisplayDeletedEvent) - Method in class net.imagej.plugins.commands.correlate.ShadowsDemo

onEvent(DatasetRestructuredEvent) - Method in class net.imagej.plugins.commands.display.HistogramPlot

onEvent(DatasetUpdatedEvent) - Method in class net.imagej.plugins.commands.display.HistogramPlot

onEvent(AxisPositionEvent) - Method in class net.imagej.plugins.commands.display.interactive.Threshold

onEvent(DisplayActivatedEvent) - Method in class net.imagej.plugins.commands.restructure.SplitChannelsContextMonitor

onEvent(DataRestructuredEvent) - Method in class net.imagej.plugins.commands.restructure.SplitChannelsContextMonitor

onEvent(DisplayActivatedEvent) - Method in class net.imagej.plugins.tools.AbstractColorTool

onEvent(DisplayDeletedEvent) - Method in class net.imagej.plugins.tools.AbstractColorTool

onEvent(OptionsEvent) - Method in class net.imagej.plugins.tools.AbstractColorTool

onEvent(AxisPositionEvent) - Method in class net.imagej.plugins.tools.AbstractColorTool

onEvent(MsPressedEvent) - Method in class net.imagej.ui.DefaultImageJUIService

onEvent(OverlayCreatedEvent) - Method in class net.imagej.ui.swing.overlay.SwingOverlayManager

onEvent(OverlayDeletedEvent) - Method in class net.imagej.ui.swing.overlay.SwingOverlayManager

onEvent(DataViewSelectionEvent) - Method in class net.imagej.ui.swing.overlay.SwingOverlayManager

onEvent(OverlayRestructuredEvent) - Method in class net.imagej.ui.swing.overlay.SwingOverlayManager

onEvent(OverlayUpdatedEvent) - Method in class net.imagej.ui.swing.overlay.SwingOverlayManager

onEvent(OptionsEvent) - Method in class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer

onEvent(DataViewSelectedEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas

onEvent(DataViewDeselectedEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas

onEvent(ToolActivatedEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas

onEvent(DisplayDeletedEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas

onEvent(PanZoomEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas

onEvent(MouseCursorEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas

onEvent(FigureCreatedEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas

When a tool creates an overlay, add the overlay/figure combo to an OverlayFigureView.

onEvent(AxisPositionEvent) - Method in class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel

onEvent(LUTsChangedEvent) - Method in class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel

onEvent(WinActivatedEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer

onEvent(PanZoomEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer

onEvent(DatasetRestructuredEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer

onEvent(DelayedPositionEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer

onEvent(DatasetUpdatedEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer

onEvent(DisplayUpdatedEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer

onEvent(UIShownEvent) - Method in class net.imagej.updater.DefaultUpdateService

Checks for updates when the ImageJ UI is first shown.

onKeyDown(KyPressedEvent) - Method in class net.imagej.plugins.tools.AcceleratorHandler

onKeyDown(KyPressedEvent) - Method in class net.imagej.plugins.tools.AxisPositionHandler

onKeyDown(KyPressedEvent) - Method in class net.imagej.plugins.tools.FocusHandler

onKeyDown(KyPressedEvent) - Method in class net.imagej.plugins.tools.KonamiHandler

onKeyDown(KyPressedEvent) - Method in class net.imagej.plugins.tools.PanActivator

onKeyDown(KyPressedEvent) - Method in class net.imagej.plugins.tools.PanTool

onKeyDown(KyPressedEvent) - Method in class net.imagej.plugins.tools.ZoomHandler

onKeyUp(KyReleasedEvent) - Method in class net.imagej.plugins.tools.PanActivator

onLoad(ClassPool, String) - Method in class net.imagej.patcher.MemoryProfiler

onLoad(ClassPool, String) - Method in class net.imagej.patcher.PerformanceProfiler

only - Variable in class net.imagej.patcher.MemoryProfiler

onMouseClick(MsClickedEvent) - Method in class net.imagej.plugins.tools.AbstractColorTool

onMouseClick(MsClickedEvent) - Method in class net.imagej.plugins.tools.ContextMenuHandler

onMouseClick(MsClickedEvent) - Method in class net.imagej.plugins.tools.FloodFillTool

Run flood fill when mouse clicked

onMouseDown(MsPressedEvent) - Method in class net.imagej.plugins.tools.AbstractLineTool

On mouse down the start point of a series of lines is established.

onMouseDown(MsPressedEvent) - Method in class net.imagej.plugins.tools.ContextMenuHandler

onMouseDown(MsPressedEvent) - Method in class net.imagej.plugins.tools.PanTool

onMouseDown(MsPressedEvent) - Method in class net.imagej.plugins.tools.SprayCanTool

On mouse down the delay counters are reset.

onMouseDown(MsPressedEvent) - Method in class net.imagej.plugins.tools.ZoomTool

onMouseDrag(MsDraggedEvent) - Method in class net.imagej.plugins.tools.AbstractLineTool

On mouse drag a series of lines are drawn.

onMouseDrag(MsDraggedEvent) - Method in class net.imagej.plugins.tools.PanTool

onMouseDrag(MsDraggedEvent) - Method in class net.imagej.plugins.tools.SprayCanTool

On mouse drag sometimes a point is drawn.

onMouseMove(MsMovedEvent) - Method in class net.imagej.plugins.tools.PixelProbe

onMouseMove(MsMovedEvent) - Method in class net.imagej.plugins.tools.ZoomTool

onMouseUp(MsReleasedEvent) - Method in class net.imagej.plugins.tools.AbstractLineTool

On mouse up all resources are freed.

onMouseUp(MsReleasedEvent) - Method in class net.imagej.plugins.tools.ContextMenuHandler

onMouseUp(MsReleasedEvent) - Method in class net.imagej.plugins.tools.SprayCanTool

On mouse up all resources are freed.

onMouseUp(MsReleasedEvent) - Method in class net.imagej.plugins.tools.ZoomTool

onMouseWheel(MsWheelEvent) - Method in class net.imagej.plugins.tools.AxisPositionHandler

onMouseWheel(MsWheelEvent) - Method in class net.imagej.plugins.tools.PanTool

onMouseWheel(MsWheelEvent) - Method in class net.imagej.plugins.tools.ZoomTool

op() - Method in class net.imagej.ImageJ

Gets this application context's OpService.

op(OpRef) - Method in class net.imagej.ops.cached.CachedOpEnvironment

Op - Interface in net.imagej.ops

An op is an operation that computes a result in a deterministic and consistent way.

op(String, Object...) - Method in interface net.imagej.ops.OpEnvironment

Gets the best Op to use for the given operation and arguments, populating its inputs.

op(Class<OP>, Object...) - Method in interface net.imagej.ops.OpEnvironment

Gets the best Op to use for the given operation type and arguments, populating its inputs.

op(OpRef) - Method in interface net.imagej.ops.OpEnvironment

Looks up an op whose constraints are specified by the given OpRef descriptor.

op(List<OpRef>) - Method in interface net.imagej.ops.OpEnvironment

Looks up an op whose constraints are specified by the given list of OpRef descriptor.

op(OpEnvironment, Class<? extends Op>, Class<S>, Class<O>, Object...) - Static method in interface net.imagej.ops.special.SpecialOp

Gets the best SpecialOp implementation for the given types and arguments, populating its inputs.

op(BezierPath, BezierPath, BezierPathFunctions.OP) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions

opCall(CommandInfo) - Static method in class net.imagej.ops.OpUtils

Returns a method call for the given Op using its name and the correct count of parameters.

OpCandidate - Class in net.imagej.ops

Container class for a possible operation match between an OpRef and an OpInfo, as computed by the OpMatchingService.

OpCandidate(OpEnvironment, OpRef, OpInfo) - Constructor for class net.imagej.ops.OpCandidate

OpCandidate.StatusCode - Enum in net.imagej.ops

open(String) - Method in interface net.imagej.DatasetService

Deprecated.
Use io.scif.services.DatasetIOService#open instead.

open(String, Object) - Method in interface net.imagej.DatasetService

Deprecated.
Use io.scif.services.DatasetIOService#open instead.

open(String) - Method in class net.imagej.DefaultDatasetService

Deprecated.
Use io.scif.services.DatasetIOService#open instead.

open(String, Object) - Method in class net.imagej.DefaultDatasetService

Deprecated.
Use io.scif.services.DatasetIOService#open instead.

open(File) - Method in class net.imagej.legacy.plugin.DefaultLegacyEditor

open(String, int, boolean) - Method in class net.imagej.legacy.plugin.DefaultLegacyOpener

open(File) - Method in interface net.imagej.legacy.plugin.LegacyEditor

open(String, int, boolean) - Method in interface net.imagej.legacy.plugin.LegacyOpener

Optionally override opening resources via legacy hooks.

open(String) - Method in class net.imagej.lut.io.LUTIOPlugin

open(String) - Method in class net.imagej.mesh.io.ply.PLYMeshIO

open(String) - Method in class net.imagej.mesh.io.stl.STLMeshIO

open(String) - Method in class net.imagej.mesh.io.xyz.XYZPointsIO

open(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace

open(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace

open(String) - Method in class net.imagej.server.external.DefaultTableIOPlugin

OPEN_BOUNDARY_TEXT - Static variable in class net.imagej.omero.roi.ROIConverters

openAndAddToRecent(File) - Static method in class net.imagej.legacy.IJ1Helper

Opens an image and adds the path to the File>Open Recent menu.

OpenBinaryImage - Class in net.imagej.plugins.commands.binary

Does a morphological open operation on a binary image.

OpenBinaryImage() - Constructor for class net.imagej.plugins.commands.binary.OpenBinaryImage

openBox(double[], double[]) - Method in interface net.imagej.roi.ROIService

Creates a WritableBox with open boundary behavior.

openConnection(URL) - Method in class net.imagej.updater.util.UpdaterUtil

Open a connection to a URL.

openDialog(String) - Method in class net.imagej.legacy.IJ1Helper

Uses ImageJ 1.x' OpenDialog

openDialog(String, File) - Method in class net.imagej.legacy.IJ1Helper

Uses ImageJ 1.x' OpenDialog

openEllipsoid(double[], double[]) - Method in interface net.imagej.roi.ROIService

Creates an WritableEllipsoid with open boundary behavior.

OpenFromOMERO - Class in net.imagej.omero.commands

A command to import objects from an OMERO database.

OpenFromOMERO() - Constructor for class net.imagej.omero.commands.OpenFromOMERO

openImage(String) - Method in class net.imagej.legacy.IJ1Helper

Opens an image using ImageJ 1.x.

openImage(String, boolean) - Method in class net.imagej.legacy.IJ1Helper

Opens an image using ImageJ 1.x.

openInEditor(String) - Method in class imagej.patcher.LegacyHooks

Deprecated.

Extension point to override ImageJ 1.x' editor.

openInEditor(String) - Method in class net.imagej.legacy.DefaultLegacyHooks

Opens the given path in the registered legacy editor, if any.

openInEditor(String) - Method in class net.imagej.patcher.LegacyHooks

Extension point to override ImageJ 1.x' editor.

OpenOMEROEllipse - Class in net.imagej.omero.roi.ellipse

An OMEROEllipse with open boundary behavior.

OpenOMEROEllipse(EllipseData) - Constructor for class net.imagej.omero.roi.ellipse.OpenOMEROEllipse

OpenOMEROPolygon - Class in net.imagej.omero.roi.polyshape

An OMEROPolygon with open boundary behavior.

OpenOMEROPolygon(PolygonData) - Constructor for class net.imagej.omero.roi.polyshape.OpenOMEROPolygon

OpenOMERORectangle - Class in net.imagej.omero.roi.rectangle

An OMERORectangle with open boundary behavior.

OpenOMERORectangle(RectangleData) - Constructor for class net.imagej.omero.roi.rectangle.OpenOMERORectangle

openPathDirectly(String) - Method in class net.imagej.legacy.IJ1Helper

Opens a path using ImageJ 1.x, bypassing the (javassisted) IJ utility class.

openPixels(OMEROFormat.Metadata) - Method in class net.imagej.omero.DefaultOMEROSession

openPixels(OMEROFormat.Metadata) - Method in interface net.imagej.omero.OMEROSession

Obtains a raw pixels store for reading from the pixels associated with the given metadata.

openPlane(int, long, ByteArrayPlane, Interval, SCIFIOConfig) - Method in class net.imagej.omero.OMEROFormat.Reader

openPolygon2D(List<? extends RealLocalizable>) - Method in interface net.imagej.roi.ROIService

Creates a WritablePolygon2D with open boundary behavior.

openPolygon2D(double[], double[]) - Method in interface net.imagej.roi.ROIService

Creates a WritablePolygon2D with open boundary behavior.

openScriptInTextEditor(ScriptInfo) - Method in class net.imagej.legacy.LegacyService

openSphere(double[], double) - Method in interface net.imagej.roi.ROIService

Creates a WritableSphere with open boundary behavior.

openStream(URL) - Method in class net.imagej.updater.util.UpdaterUtil

Open a stream to a URL.

openSuperEllipsoid(double[], double[], double) - Method in interface net.imagej.roi.ROIService

Creates a WritableSuperEllipsoid with open boundary behavior.

OpenTemplateSearchActionFactory - Class in net.imagej.legacy.search

OpenTemplateSearchActionFactory() - Constructor for class net.imagej.legacy.search.OpenTemplateSearchActionFactory

openURL(String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface

openURL(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface

openURL(String) - Method in class net.imagej.updater.util.UpdaterUserInterface

openURL(String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface

OpEnvironment - Interface in net.imagej.ops

An op environment is the top-level entry point into op execution.

OpEnvironmentPreprocessor - Class in net.imagej.ops

A preprocessor plugin that injects an OpEnvironment into Op instances.

OpEnvironmentPreprocessor() - Constructor for class net.imagej.ops.OpEnvironmentPreprocessor

openWebPage() - Method in class net.imagej.options.OptionsCompatibility

openWebPage() - Method in class net.imagej.plugins.commands.assign.EquationDataValues

openWebPage() - Method in class net.imagej.plugins.commands.debug.PointSetDemo

operator() - Method in class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealInterval

OpEvaluator - Class in net.imagej.ops.eval

A Parsington Evaluator using available Ops.

OpEvaluator(OpEnvironment) - Constructor for class net.imagej.ops.eval.OpEvaluator

opInfo() - Method in class net.imagej.ops.OpCandidate

Gets the OpInfo metadata describing the op to match against.

OpInfo - Class in net.imagej.ops

Metadata about a particular Op implementation.

OpInfo(CommandInfo) - Constructor for class net.imagej.ops.OpInfo

OpInfo(Class<? extends Op>) - Constructor for class net.imagej.ops.OpInfo

OpMatchingService - Interface in net.imagej.ops

Interface for services that find Ops which match an OpRef.

OpMatchingUtil - Class in net.imagej.ops

Utility class for OpMatchingService.

OpMethod - Annotation Type in net.imagej.ops

Annotation for methods that delegate to a specific Op implementation.

OpRef - Class in net.imagej.ops

Data structure which identifies an op by name and/or type(s) and/or argument type(s), along with a list of input arguments.

OpRef(String, Collection<? extends Type>, Collection<? extends Type>, Object...) - Constructor for class net.imagej.ops.OpRef

Creates a new op reference.

ops() - Method in class net.imagej.ops.AbstractNamespace

ops() - Method in class net.imagej.ops.AbstractOp

ops() - Method in interface net.imagej.ops.Environmental

Gets the op execution environment.

ops() - Method in class net.imagej.ops.OpCandidate

Gets the op execution environment of the desired match.

ops() - Method in interface net.imagej.ops.OpEnvironment

Gets the fully qualified names of all available operations.

Ops - Class in net.imagej.ops

Static utility class containing built-in op interfaces.

Ops.Coloc - Class in net.imagej.ops

Built-in op interfaces of the coloc namespace.

Ops.Coloc.Costes - Interface in net.imagej.ops

Base interface for "costes" operations.

Ops.Coloc.ICQ - Interface in net.imagej.ops

Base interface for "icq" operations.

Ops.Coloc.KendallTau - Interface in net.imagej.ops

Base interface for "kendallTau" operations.

Ops.Coloc.Manders - Interface in net.imagej.ops

Base interface for "manders" operations.

Ops.Coloc.MaxTKendallTau - Interface in net.imagej.ops

Base interface for "maxTKendallTau" operations.

Ops.Coloc.Pearsons - Interface in net.imagej.ops

Base interface for "pearsons" operations.

Ops.Coloc.PValue - Interface in net.imagej.ops

Base interface for "pValue" operations.

Ops.Coloc.Spearman - Interface in net.imagej.ops

Base interface for "spearman" operations.

Ops.Convert - Class in net.imagej.ops

Built-in op interfaces of the convert namespace.

Ops.Convert.Bit - Interface in net.imagej.ops

Base interface for "bit" operations.

Ops.Convert.Cfloat32 - Interface in net.imagej.ops

Base interface for "cfloat32" operations.

Ops.Convert.Cfloat64 - Interface in net.imagej.ops

Base interface for "cfloat64" operations.

Ops.Convert.Clip - Interface in net.imagej.ops

Base interface for "clip" operations.

Ops.Convert.Copy - Interface in net.imagej.ops

Base interface for "copy" operations.

Ops.Convert.Float32 - Interface in net.imagej.ops

Base interface for "float32" operations.

Ops.Convert.Float64 - Interface in net.imagej.ops

Base interface for "float64" operations.

Ops.Convert.ImageType - Interface in net.imagej.ops

Base interface for "imageType" operations.

Ops.Convert.Int16 - Interface in net.imagej.ops

Base interface for "int16" operations.

Ops.Convert.Int32 - Interface in net.imagej.ops

Base interface for "int32" operations.

Ops.Convert.Int64 - Interface in net.imagej.ops

Base interface for "int64" operations.

Ops.Convert.Int8 - Interface in net.imagej.ops

Base interface for "int8" operations.

Ops.Convert.NormalizeScale - Interface in net.imagej.ops

Base interface for "normalizeScale" operations.

Ops.Convert.Scale - Interface in net.imagej.ops

Base interface for "scale" operations.

Ops.Convert.Uint12 - Interface in net.imagej.ops

Base interface for "uint12" operations.

Ops.Convert.Uint128 - Interface in net.imagej.ops

Base interface for "uint128" operations.

Ops.Convert.Uint16 - Interface in net.imagej.ops

Base interface for "uint16" operations.

Ops.Convert.Uint2 - Interface in net.imagej.ops

Base interface for "uint2" operations.

Ops.Convert.Uint32 - Interface in net.imagej.ops

Base interface for "uint32" operations.

Ops.Convert.Uint4 - Interface in net.imagej.ops

Base interface for "uint4" operations.

Ops.Convert.Uint64 - Interface in net.imagej.ops

Base interface for "uint64" operations.

Ops.Convert.Uint8 - Interface in net.imagej.ops

Base interface for "uint8" operations.

Ops.Copy - Class in net.imagej.ops

Built-in op interfaces of the copy namespace.

Ops.Copy.Img - Interface in net.imagej.ops

Base interface for "img" operations.

Ops.Copy.ImgLabeling - Interface in net.imagej.ops

Base interface for "imgLabeling" operations.

Ops.Copy.ImgPlus - Interface in net.imagej.ops

Base interface for "imgPlus" operations.

Ops.Copy.IterableInterval - Interface in net.imagej.ops

Base interface for "iterableInterval" operations.

Ops.Copy.LabelingMapping - Interface in net.imagej.ops

Base interface for "labelingMapping" operations.

Ops.Copy.RAI - Interface in net.imagej.ops

Base interface for "rai" operations.

Ops.Copy.Type - Interface in net.imagej.ops

Base interface for "type" operations.

Ops.Create - Class in net.imagej.ops

Built-in op interfaces of the create namespace.

Ops.Create.Img - Interface in net.imagej.ops

Base interface for "img" operations.

Ops.Create.ImgFactory - Interface in net.imagej.ops

Base interface for "imgFactory" operations.

Ops.Create.ImgLabeling - Interface in net.imagej.ops

Base interface for "imgLabeling" operations.

Ops.Create.ImgPlus - Interface in net.imagej.ops

Base interface for "imgPlus" operations.

Ops.Create.IntegerType - Interface in net.imagej.ops

Base interface for "integerType" operations.

Ops.Create.Kernel - Interface in net.imagej.ops

Base interface for "kernel" operations.

Ops.Create.Kernel2ndDerivBiGauss - Interface in net.imagej.ops

Base interface for "kernel2ndDerivBiGauss" operations.

Ops.Create.KernelBiGauss - Interface in net.imagej.ops

Base interface for "kernelBiGauss" operations.

Ops.Create.KernelDiffraction - Interface in net.imagej.ops

Base interface for "kernelDiffraction" operations.

Ops.Create.KernelGabor - Interface in net.imagej.ops

Base interface for "kernelGabor" operations.

Ops.Create.KernelGauss - Interface in net.imagej.ops

Base interface for "kernelGauss" operations.

Ops.Create.KernelLog - Interface in net.imagej.ops

Base interface for "kernelLog" operations.

Ops.Create.KernelSobel - Interface in net.imagej.ops

Base interface for "kernelSobel" operations.

Ops.Create.LabelingMapping - Interface in net.imagej.ops

Base interface for "labelingMapping" operations.

Ops.Create.NativeImg - Interface in net.imagej.ops

Base interface for "nativeImg" operations.

Ops.Create.NativeType - Interface in net.imagej.ops

Base interface for "nativeType" operations.

Ops.Create.Object - Interface in net.imagej.ops

Base interface for "object" operations.

Ops.Create.Type - Interface in net.imagej.ops

Base interface for "type" operations.

Ops.Deconvolve - Class in net.imagej.ops

Built-in op interfaces of the deconvolve namespace.

Ops.Deconvolve.Accelerate - Interface in net.imagej.ops

Base interface for "accelerate" operations.

Ops.Deconvolve.FirstGuess - Interface in net.imagej.ops

Base interface for "firstGuess" operations.

Ops.Deconvolve.NormalizationFactor - Interface in net.imagej.ops

Base interface for "normalizationFactor" operations.

Ops.Deconvolve.RichardsonLucy - Interface in net.imagej.ops

Base interface for "richardsonLucy" operations.

Ops.Deconvolve.RichardsonLucyCorrection - Interface in net.imagej.ops

Base interface for "richardsonLucyCorrection" operations.

Ops.Deconvolve.RichardsonLucyTV - Interface in net.imagej.ops

Base interface for "richardsonLucyTV" operations.

Ops.Deconvolve.RichardsonLucyUpdate - Interface in net.imagej.ops

Base interface for "richardsonLucyUpdate" operations.

Ops.Eval - Interface in net.imagej.ops

Base interface for "eval" operations.

Ops.Filter - Class in net.imagej.ops

Built-in op interfaces of the filter namespace.

Ops.Filter.AddNoise - Interface in net.imagej.ops

Base interface for "addNoise" operations.

Ops.Filter.AddPoissonNoise - Interface in net.imagej.ops

Base interface for "addPoissonNoise" operations.

Ops.Filter.AllPartialDerivatives - Interface in net.imagej.ops

Base interface for "allPartialDerivatives" operations.

Ops.Filter.Bilateral - Interface in net.imagej.ops

Base interface for "bilateral" operations.

Ops.Filter.Convolve - Interface in net.imagej.ops

Base interface for "convolve" operations.

Ops.Filter.Correlate - Interface in net.imagej.ops

Base interface for "correlate" operations.

Ops.Filter.CreateFFTOutput - Interface in net.imagej.ops

Base interface for "createFFTOutput" operations.

Ops.Filter.DerivativeGauss - Interface in net.imagej.ops

Base interface for "derivativeGauss" operations.

Ops.Filter.DoG - Interface in net.imagej.ops

Base interface for "dog" operations.

Ops.Filter.FFT - Interface in net.imagej.ops

Base interface for "fft" operations.

Ops.Filter.FFTSize - Interface in net.imagej.ops

Base interface for "fftSize" operations.

Ops.Filter.FrangiVesselness - Interface in net.imagej.ops

Base interface for "frangiVesselness" operations.

Ops.Filter.Gauss - Interface in net.imagej.ops

Base interface for "gauss" operations.

Ops.Filter.Hessian - Interface in net.imagej.ops

Base interface for "hessian" operations.

Ops.Filter.IFFT - Interface in net.imagej.ops

Base interface for "ifft" operations.

Ops.Filter.LinearFilter - Interface in net.imagej.ops

Base interface for "linearFilter" operations.

Ops.Filter.Max - Interface in net.imagej.ops

Base interface for "max" operations.

Ops.Filter.Mean - Interface in net.imagej.ops

Base interface for "mean" operations.

Ops.Filter.Median - Interface in net.imagej.ops

Base interface for "median" operations.

Ops.Filter.Min - Interface in net.imagej.ops

Base interface for "min" operations.

Ops.Filter.PaddingIntervalCentered - Interface in net.imagej.ops

Base interface for "paddingIntervalCentered" operations.

Ops.Filter.PaddingIntervalOrigin - Interface in net.imagej.ops

Base interface for "paddingIntervalOrigin" operations.

Ops.Filter.PadFFTInput - Interface in net.imagej.ops

Base interface for "padFFTInput" operations.

Ops.Filter.PadInput - Interface in net.imagej.ops

Base interface for "padInput" operations.

Ops.Filter.PadShiftFFTKernel - Interface in net.imagej.ops

Base interface for "padShiftFFTKernel" operations.

Ops.Filter.PartialDerivative - Interface in net.imagej.ops

Base interface for "partialDerivative" operations.

Ops.Filter.Sigma - Interface in net.imagej.ops

Base interface for "sigma" operations.

Ops.Filter.Sobel - Interface in net.imagej.ops

Base interface for "sobel" operations.

Ops.Filter.Tubeness - Interface in net.imagej.ops

Base interface for "tubeness" operations.

Ops.Filter.Variance - Interface in net.imagej.ops

Base interface for "variance" operations.

Ops.Geometric - Class in net.imagej.ops

Built-in op interfaces of the geom namespace.

Ops.Geometric.Boundary - Interface in net.imagej.ops

Base interface for "boundary" operations.

Ops.Geometric.BoundaryConvexHull - Interface in net.imagej.ops

Base interface for "boundaryConvexHull" operations.

Ops.Geometric.BoundarySize - Interface in net.imagej.ops

Base interface for "boundarySize" operations.

Ops.Geometric.BoundarySizeConvexHull - Interface in net.imagej.ops

Base interface for "boundarySizeConvexHull" operations.

Ops.Geometric.BoundingBox - Interface in net.imagej.ops

Base interface for "boundingBox" operations.

Ops.Geometric.Boxivity - Interface in net.imagej.ops

Base interface for "boxivity" operations.

Ops.Geometric.CenterOfGravity - Interface in net.imagej.ops

Base interface for "centerOfGravity" operations.

Ops.Geometric.Centroid - Interface in net.imagej.ops

Base interface for "centroid" operations.

Ops.Geometric.Circularity - Interface in net.imagej.ops

Base interface for "circularity" operations.

Ops.Geometric.Compactness - Interface in net.imagej.ops

Base interface for "compactness" operations.

Ops.Geometric.Contour - Interface in net.imagej.ops

Base interface for "contour" operations.

Ops.Geometric.ConvexHull - Interface in net.imagej.ops

Base interface for "convexHull" operations.

Ops.Geometric.Convexity - Interface in net.imagej.ops

Base interface for "convexity" operations.

Ops.Geometric.Eccentricity - Interface in net.imagej.ops

Base interface for "eccentricity" operations.

Ops.Geometric.FeretsAngle - Interface in net.imagej.ops

Base interface for "feretsAngle" operations.

Ops.Geometric.FeretsDiameter - Interface in net.imagej.ops

Base interface for "feretsDiameter" operations.

Ops.Geometric.MainElongation - Interface in net.imagej.ops

Base interface for "mainElongation" operations.

Ops.Geometric.MajorAxis - Interface in net.imagej.ops

Base interface for "majorAxis" operations.

Ops.Geometric.MarchingCubes - Interface in net.imagej.ops

Base interface for "marchingCubes" operations.

Ops.Geometric.MaximumFeret - Interface in net.imagej.ops

Base interface for "maximumFeret" operations.

Ops.Geometric.MaximumFeretsAngle - Interface in net.imagej.ops

Base interface for "maximumFeretsAngle" operations.

Ops.Geometric.MaximumFeretsDiameter - Interface in net.imagej.ops

Base interface for "maximumFeretsDiameter" operations.

Ops.Geometric.MedianElongation - Interface in net.imagej.ops

Base interface for "medianElongation" operations.

Ops.Geometric.MinimumFeret - Interface in net.imagej.ops

Base interface for "minimumFeret" operations.

Ops.Geometric.MinimumFeretsAngle - Interface in net.imagej.ops

Base interface for "minimumFeretsAngle" operations.

Ops.Geometric.MinimumFeretsDiameter - Interface in net.imagej.ops

Base interface for "minimumFeretsDiameter" operations.

Ops.Geometric.MinorAxis - Interface in net.imagej.ops

Base interface for "minorAxis" operations.

Ops.Geometric.Roundness - Interface in net.imagej.ops

Base interface for "roundness" operations.

Ops.Geometric.SecondMoment - Interface in net.imagej.ops

Base interface for "secondMoment" operations.

Ops.Geometric.Size - Interface in net.imagej.ops

Base interface for "size" operations.

Ops.Geometric.SizeConvexHull - Interface in net.imagej.ops

Base interface for "sizeConvexHull" operations.

Ops.Geometric.SmallestEnclosingBoundingBox - Interface in net.imagej.ops

Base interface for "smallestEnclosingBoundingBox" operations.

Ops.Geometric.Solidity - Interface in net.imagej.ops

Base interface for "solidity" operations.

Ops.Geometric.Spareness - Interface in net.imagej.ops

Base interface for "spareness" operations.

Ops.Geometric.Sphericity - Interface in net.imagej.ops

Base interface for "sphericity" operations.

Ops.Geometric.VertexInterpolator - Interface in net.imagej.ops

Base interface for "vertexInterpolator" operations.

Ops.Geometric.VerticesCount - Interface in net.imagej.ops

Base interface for "verticesCount" operations.

Ops.Geometric.VerticesCountConvexHull - Interface in net.imagej.ops

Base interface for "verticesCountConvexHull" operations.

Ops.Geometric.Voxelization - Interface in net.imagej.ops

Base interface for "voxelization" operations.

Ops.Haralick - Class in net.imagej.ops

Built-in op interfaces of the haralick namespace.

Ops.Haralick.ASM - Interface in net.imagej.ops

Base interface for "asm" operations.

Ops.Haralick.ClusterPromenence - Interface in net.imagej.ops

Base interface for "clusterPromenence" operations.

Ops.Haralick.ClusterShade - Interface in net.imagej.ops

Base interface for "clusterShade" operations.

Ops.Haralick.Contrast - Interface in net.imagej.ops

Base interface for "contrast" operations.

Ops.Haralick.Correlation - Interface in net.imagej.ops

Base interface for "correlation" operations.

Ops.Haralick.DifferenceEntropy - Interface in net.imagej.ops

Base interface for "differenceEntropy" operations.

Ops.Haralick.DifferenceVariance - Interface in net.imagej.ops

Base interface for "differenceVariance" operations.

Ops.Haralick.Entropy - Interface in net.imagej.ops

Base interface for "entropy" operations.

Ops.Haralick.ICM1 - Interface in net.imagej.ops

Base interface for "icm1" operations.

Ops.Haralick.ICM2 - Interface in net.imagej.ops

Base interface for "icm2" operations.

Ops.Haralick.IFDM - Interface in net.imagej.ops

Base interface for "ifdm" operations.

Ops.Haralick.MaxProbability - Interface in net.imagej.ops

Base interface for "maxProbability" operations.

Ops.Haralick.SumAverage - Interface in net.imagej.ops

Base interface for "sumAverage" operations.

Ops.Haralick.SumEntropy - Interface in net.imagej.ops

Base interface for "sumEntropy" operations.

Ops.Haralick.SumVariance - Interface in net.imagej.ops

Base interface for "sumVariance" operations.

Ops.Haralick.TextureHomogeneity - Interface in net.imagej.ops

Base interface for "textureHomogeneity" operations.

Ops.Haralick.Variance - Interface in net.imagej.ops

Base interface for "variance" operations.

Ops.Help - Interface in net.imagej.ops

Base interface for "help" operations.

Ops.HoG - Class in net.imagej.ops

Built-in op interfaces of the hog namespace.

Ops.HoG.HistogramOfOrientedGradients - Interface in net.imagej.ops

Base interface for "hog" operations.

Ops.Identity - Interface in net.imagej.ops

Base interface for "identity" operations.

Ops.Image - Class in net.imagej.ops

Built-in op interfaces of the image namespace.

Ops.Image.ASCII - Interface in net.imagej.ops

Base interface for "ascii" operations.

Ops.Image.CooccurrenceMatrix - Interface in net.imagej.ops

Base interface for "cooccurrenceMatrix" operations.

Ops.Image.DistanceTransform - Interface in net.imagej.ops

Base interface for "distancetransform" operations.

Ops.Image.Equation - Interface in net.imagej.ops

Base interface for "equation" operations.

Ops.Image.Fill - Interface in net.imagej.ops

Base interface for "fill" operations.

Ops.Image.Histogram - Interface in net.imagej.ops

Base interface for "histogram" operations.

Ops.Image.Integral - Interface in net.imagej.ops

Base interface for "integral" operations.

Ops.Image.Invert - Interface in net.imagej.ops

Base interface for "invert" operations.

Ops.Image.Normalize - Interface in net.imagej.ops

Base interface for "normalize" operations.

Ops.Image.SquareIntegral - Interface in net.imagej.ops

Base interface for "squareIntegral" operations.

Ops.Image.Watershed - Interface in net.imagej.ops

Base interface for "watershed" operations.

Ops.ImageMoments - Class in net.imagej.ops

Built-in op interfaces of the imagemoments namespace.

Ops.ImageMoments.CentralMoment00 - Interface in net.imagej.ops

Base interface for "centralMoment00" operations.

Ops.ImageMoments.CentralMoment01 - Interface in net.imagej.ops

Base interface for "centralMoment01" operations.

Ops.ImageMoments.CentralMoment02 - Interface in net.imagej.ops

Base interface for "centralMoment02" operations.

Ops.ImageMoments.CentralMoment03 - Interface in net.imagej.ops

Base interface for "centralMoment03" operations.

Ops.ImageMoments.CentralMoment10 - Interface in net.imagej.ops

Base interface for "centralMoment10" operations.

Ops.ImageMoments.CentralMoment11 - Interface in net.imagej.ops

Base interface for "centralMoment11" operations.

Ops.ImageMoments.CentralMoment12 - Interface in net.imagej.ops

Base interface for "centralMoment12" operations.

Ops.ImageMoments.CentralMoment20 - Interface in net.imagej.ops

Base interface for "centralMoment20" operations.

Ops.ImageMoments.CentralMoment21 - Interface in net.imagej.ops

Base interface for "centralMoment21" operations.

Ops.ImageMoments.CentralMoment30 - Interface in net.imagej.ops

Base interface for "centralMoment30" operations.

Ops.ImageMoments.HuMoment1 - Interface in net.imagej.ops

Base interface for "huMoment1" operations.

Ops.ImageMoments.HuMoment2 - Interface in net.imagej.ops

Base interface for "huMoment2" operations.

Ops.ImageMoments.HuMoment3 - Interface in net.imagej.ops

Base interface for "huMoment3" operations.

Ops.ImageMoments.HuMoment4 - Interface in net.imagej.ops

Base interface for "huMoment4" operations.

Ops.ImageMoments.HuMoment5 - Interface in net.imagej.ops

Base interface for "huMoment5" operations.

Ops.ImageMoments.HuMoment6 - Interface in net.imagej.ops

Base interface for "huMoment6" operations.

Ops.ImageMoments.HuMoment7 - Interface in net.imagej.ops

Base interface for "huMoment7" operations.

Ops.ImageMoments.Moment00 - Interface in net.imagej.ops

Base interface for "moment00" operations.

Ops.ImageMoments.Moment01 - Interface in net.imagej.ops

Base interface for "moment01" operations.

Ops.ImageMoments.Moment10 - Interface in net.imagej.ops

Base interface for "moment10" operations.

Ops.ImageMoments.Moment11 - Interface in net.imagej.ops

Base interface for "moment11" operations.

Ops.ImageMoments.NormalizedCentralMoment02 - Interface in net.imagej.ops

Base interface for "normalizedCentralMoment02" operations.

Ops.ImageMoments.NormalizedCentralMoment03 - Interface in net.imagej.ops

Base interface for "normalizedCentralMoment03" operations.

Ops.ImageMoments.NormalizedCentralMoment11 - Interface in net.imagej.ops

Base interface for "normalizedCentralMoment11" operations.

Ops.ImageMoments.NormalizedCentralMoment12 - Interface in net.imagej.ops

Base interface for "normalizedCentralMoment12" operations.

Ops.ImageMoments.NormalizedCentralMoment20 - Interface in net.imagej.ops

Base interface for "normalizedCentralMoment20" operations.

Ops.ImageMoments.NormalizedCentralMoment21 - Interface in net.imagej.ops

Base interface for "normalizedCentralMoment21" operations.

Ops.ImageMoments.NormalizedCentralMoment30 - Interface in net.imagej.ops

Base interface for "normalizedCentralMoment30" operations.

Ops.Join - Interface in net.imagej.ops

Base interface for "join" operations.

Ops.Labeling - Class in net.imagej.ops

Built-in op interfaces of the labeling namespace.

Ops.Labeling.CCA - Interface in net.imagej.ops

Base interface for "cca" operations.

Ops.Labeling.Merge - Interface in net.imagej.ops

Base interface for "merge" operations.

Ops.LBP - Class in net.imagej.ops

Built-in op interfaces of the lbp namespace.

Ops.LBP.LBP2D - Interface in net.imagej.ops

Base interface for "lbp2D" operations.

Ops.LinAlg - Class in net.imagej.ops

Built-in op interfaces of the linalg namespace.

Ops.LinAlg.Rotate - Interface in net.imagej.ops

Base interface for "rotate" operations.

Ops.Logic - Class in net.imagej.ops

Built-in op interfaces of the logic namespace.

Ops.Logic.And - Interface in net.imagej.ops

Base interface for "and" operations.

Ops.Logic.Bool - Interface in net.imagej.ops

Base interface for "bool" operations.

Ops.Logic.Conditional - Interface in net.imagej.ops

Base interface for "conditional" operations.

Ops.Logic.Equal - Interface in net.imagej.ops

Base interface for "equal" operations.

Ops.Logic.GreaterThan - Interface in net.imagej.ops

Base interface for "greaterThan" operations.

Ops.Logic.GreaterThanOrEqual - Interface in net.imagej.ops

Base interface for "greaterThanOrEqual" operations.

Ops.Logic.LessThan - Interface in net.imagej.ops

Base interface for "lessThan" operations.

Ops.Logic.LessThanOrEqual - Interface in net.imagej.ops

Base interface for "lessThanOrEqual" operations.

Ops.Logic.Not - Interface in net.imagej.ops

Base interface for "not" operations.

Ops.Logic.NotEqual - Interface in net.imagej.ops

Base interface for "notEqual" operations.

Ops.Logic.Or - Interface in net.imagej.ops

Base interface for "or" operations.

Ops.Logic.Xor - Interface in net.imagej.ops

Base interface for "xor" operations.

Ops.Lookup - Interface in net.imagej.ops

Base interface for "op" operations.

Ops.Loop - Interface in net.imagej.ops

Base interface for "loop" operations.

Ops.Map - Interface in net.imagej.ops

Base interface for "map" operations.

Ops.Math - Class in net.imagej.ops

Built-in op interfaces of the math namespace.

Ops.Math.Abs - Interface in net.imagej.ops

Base interface for "abs" operations.

Ops.Math.Add - Interface in net.imagej.ops

Base interface for "add" operations.

Ops.Math.And - Interface in net.imagej.ops

Base interface for "and" operations.

Ops.Math.Arccos - Interface in net.imagej.ops

Base interface for "arccos" operations.

Ops.Math.Arccosh - Interface in net.imagej.ops

Base interface for "arccosh" operations.

Ops.Math.Arccot - Interface in net.imagej.ops

Base interface for "arccot" operations.

Ops.Math.Arccoth - Interface in net.imagej.ops

Base interface for "arccoth" operations.

Ops.Math.Arccsc - Interface in net.imagej.ops

Base interface for "arccsc" operations.

Ops.Math.Arccsch - Interface in net.imagej.ops

Base interface for "arccsch" operations.

Ops.Math.Arcsec - Interface in net.imagej.ops

Base interface for "arcsec" operations.

Ops.Math.Arcsech - Interface in net.imagej.ops

Base interface for "arcsech" operations.

Ops.Math.Arcsin - Interface in net.imagej.ops

Base interface for "arcsin" operations.

Ops.Math.Arcsinh - Interface in net.imagej.ops

Base interface for "arcsinh" operations.

Ops.Math.Arctan - Interface in net.imagej.ops

Base interface for "arctan" operations.

Ops.Math.Arctanh - Interface in net.imagej.ops

Base interface for "arctanh" operations.

Ops.Math.Assign - Interface in net.imagej.ops

Base interface for "assign" operations.

Ops.Math.Ceil - Interface in net.imagej.ops

Base interface for "ceil" operations.

Ops.Math.Complement - Interface in net.imagej.ops

Base interface for "complement" operations.

Ops.Math.ComplexConjugateMultiply - Interface in net.imagej.ops

Base interface for "complexConjugateMultiply" operations.

Ops.Math.Cos - Interface in net.imagej.ops

Base interface for "cos" operations.

Ops.Math.Cosh - Interface in net.imagej.ops

Base interface for "cosh" operations.

Ops.Math.Cot - Interface in net.imagej.ops

Base interface for "cot" operations.

Ops.Math.Coth - Interface in net.imagej.ops

Base interface for "coth" operations.

Ops.Math.Csc - Interface in net.imagej.ops

Base interface for "csc" operations.

Ops.Math.Csch - Interface in net.imagej.ops

Base interface for "csch" operations.

Ops.Math.CubeRoot - Interface in net.imagej.ops

Base interface for "cubeRoot" operations.

Ops.Math.Divide - Interface in net.imagej.ops

Base interface for "divide" operations.

Ops.Math.Exp - Interface in net.imagej.ops

Base interface for "exp" operations.

Ops.Math.ExpMinusOne - Interface in net.imagej.ops

Base interface for "expMinusOne" operations.

Ops.Math.Floor - Interface in net.imagej.ops

Base interface for "floor" operations.

Ops.Math.Gamma - Interface in net.imagej.ops

Base interface for "gamma" operations.

Ops.Math.Invert - Interface in net.imagej.ops

Base interface for "invert" operations.

Ops.Math.LeftShift - Interface in net.imagej.ops

Base interface for "leftShift" operations.

Ops.Math.Log - Interface in net.imagej.ops

Base interface for "log" operations.

Ops.Math.Log10 - Interface in net.imagej.ops

Base interface for "log10" operations.

Ops.Math.Log2 - Interface in net.imagej.ops

Base interface for "log2" operations.

Ops.Math.LogOnePlusX - Interface in net.imagej.ops

Base interface for "logOnePlusX" operations.

Ops.Math.Max - Interface in net.imagej.ops

Base interface for "max" operations.

Ops.Math.Min - Interface in net.imagej.ops

Base interface for "min" operations.

Ops.Math.Multiply - Interface in net.imagej.ops

Base interface for "multiply" operations.

Ops.Math.NearestInt - Interface in net.imagej.ops

Base interface for "nearestInt" operations.

Ops.Math.Negate - Interface in net.imagej.ops

Base interface for "negate" operations.

Ops.Math.Or - Interface in net.imagej.ops

Base interface for "or" operations.

Ops.Math.Power - Interface in net.imagej.ops

Base interface for "power" operations.

Ops.Math.RandomGaussian - Interface in net.imagej.ops

Base interface for "randomGaussian" operations.

Ops.Math.RandomUniform - Interface in net.imagej.ops

Base interface for "randomUniform" operations.

Ops.Math.Reciprocal - Interface in net.imagej.ops

Base interface for "reciprocal" operations.

Ops.Math.Remainder - Interface in net.imagej.ops

Base interface for "remainder" operations.

Ops.Math.RightShift - Interface in net.imagej.ops

Base interface for "rightShift" operations.

Ops.Math.Round - Interface in net.imagej.ops

Base interface for "round" operations.

Ops.Math.Sec - Interface in net.imagej.ops

Base interface for "sec" operations.

Ops.Math.Sech - Interface in net.imagej.ops

Base interface for "sech" operations.

Ops.Math.Signum - Interface in net.imagej.ops

Base interface for "signum" operations.

Ops.Math.Sin - Interface in net.imagej.ops

Base interface for "sin" operations.

Ops.Math.Sinc - Interface in net.imagej.ops

Base interface for "sinc" operations.

Ops.Math.SincPi - Interface in net.imagej.ops

Base interface for "sincPi" operations.

Ops.Math.Sinh - Interface in net.imagej.ops

Base interface for "sinh" operations.

Ops.Math.Sqr - Interface in net.imagej.ops

Base interface for "sqr" operations.

Ops.Math.Sqrt - Interface in net.imagej.ops

Base interface for "sqrt" operations.

Ops.Math.Step - Interface in net.imagej.ops

Base interface for "step" operations.

Ops.Math.Subtract - Interface in net.imagej.ops

Base interface for "subtract" operations.

Ops.Math.Tan - Interface in net.imagej.ops

Base interface for "tan" operations.

Ops.Math.Tanh - Interface in net.imagej.ops

Base interface for "tanh" operations.

Ops.Math.Ulp - Interface in net.imagej.ops

Base interface for "ulp" operations.

Ops.Math.UnsignedRightShift - Interface in net.imagej.ops

Base interface for "unsignedRightShift" operations.

Ops.Math.Xor - Interface in net.imagej.ops

Base interface for "xor" operations.

Ops.Math.Zero - Interface in net.imagej.ops

Base interface for "zero" operations.

Ops.Morphology - Class in net.imagej.ops

Built-in op interfaces of the morphology namespace.

Ops.Morphology.BlackTopHat - Interface in net.imagej.ops

Base interface for "blackTopHat" operations.

Ops.Morphology.Close - Interface in net.imagej.ops

Base interface for "close" operations.

Ops.Morphology.Dilate - Interface in net.imagej.ops

Base interface for "dilate" operations.

Ops.Morphology.Erode - Interface in net.imagej.ops

Base interface for "erode" operations.

Ops.Morphology.ExtractHoles - Interface in net.imagej.ops

Base interface for "extractHoles" operations.

Ops.Morphology.FillHoles - Interface in net.imagej.ops

Base interface for "fillHoles" operations.

Ops.Morphology.FloodFill - Interface in net.imagej.ops

Base interface for "floodFill" operations.

Ops.Morphology.Open - Interface in net.imagej.ops

Base interface for "open" operations.

Ops.Morphology.Outline - Interface in net.imagej.ops

Base interface for "outline" operations.

Ops.Morphology.ThinGuoHall - Interface in net.imagej.ops

Base interface for "thinGuoHall" operations.

Ops.Morphology.ThinHilditch - Interface in net.imagej.ops

Base interface for "thinHilditch" operations.

Ops.Morphology.ThinMorphological - Interface in net.imagej.ops

Base interface for "thinMorphological" operations.

Ops.Morphology.ThinZhangSuen - Interface in net.imagej.ops

Base interface for "thinZhangSuen" operations.

Ops.Morphology.TopHat - Interface in net.imagej.ops

Base interface for "topHat" operations.

Ops.Run - Interface in net.imagej.ops

Base interface for "run" operations.

Ops.Segment - Class in net.imagej.ops

Built-in op interfaces of the segment namespace.

Ops.Segment.DetectJunctions - Interface in net.imagej.ops

Base interface for "detectJunctions" operations.

Ops.Segment.DetectRidges - Interface in net.imagej.ops

Base interface for "detectRidges" operations.

Ops.Slice - Interface in net.imagej.ops

Base interface for "slice" operations.

Ops.Stats - Class in net.imagej.ops

Built-in op interfaces of the stats namespace.

Ops.Stats.GeometricMean - Interface in net.imagej.ops

Base interface for "geometricMean" operations.

Ops.Stats.HarmonicMean - Interface in net.imagej.ops

Base interface for "harmonicMean" operations.

Ops.Stats.IntegralMean - Interface in net.imagej.ops

Base interface for "integralMean" operations.

Ops.Stats.IntegralSum - Interface in net.imagej.ops

Base interface for "integralSum" operations.

Ops.Stats.IntegralVariance - Interface in net.imagej.ops

Base interface for "integralVariance" operations.

Ops.Stats.Kurtosis - Interface in net.imagej.ops

Base interface for "kurtosis" operations.

Ops.Stats.LeastSquares - Interface in net.imagej.ops

Base interface for "leastSquares" operations.

Ops.Stats.Max - Interface in net.imagej.ops

Base interface for "max" operations.

Ops.Stats.Mean - Interface in net.imagej.ops

Base interface for "mean" operations.

Ops.Stats.Median - Interface in net.imagej.ops

Base interface for "median" operations.

Ops.Stats.Min - Interface in net.imagej.ops

Base interface for "min" operations.

Ops.Stats.MinMax - Interface in net.imagej.ops

Base interface for "minMax" operations.

Ops.Stats.Moment1AboutMean - Interface in net.imagej.ops

Base interface for "moment1AboutMean" operations.

Ops.Stats.Moment2AboutMean - Interface in net.imagej.ops

Base interface for "moment2AboutMean" operations.

Ops.Stats.Moment3AboutMean - Interface in net.imagej.ops

Base interface for "moment3AboutMean" operations.

Ops.Stats.Moment4AboutMean - Interface in net.imagej.ops

Base interface for "moment4AboutMean" operations.

Ops.Stats.Percentile - Interface in net.imagej.ops

Base interface for "percentile" operations.

Ops.Stats.Quantile - Interface in net.imagej.ops

Base interface for "quantile" operations.

Ops.Stats.Size - Interface in net.imagej.ops

Base interface for "size" operations.

Ops.Stats.Skewness - Interface in net.imagej.ops

Base interface for "skewness" operations.

Ops.Stats.StdDev - Interface in net.imagej.ops

Base interface for "stdDev" operations.

Ops.Stats.Sum - Interface in net.imagej.ops

Base interface for "sum" operations.

Ops.Stats.SumOfInverses - Interface in net.imagej.ops

Base interface for "sumOfInverses" operations.

Ops.Stats.SumOfLogs - Interface in net.imagej.ops

Base interface for "sumOfLogs" operations.

Ops.Stats.SumOfSquares - Interface in net.imagej.ops

Base interface for "sumOfSquares" operations.

Ops.Stats.Variance - Interface in net.imagej.ops

Base interface for "variance" operations.

Ops.Tamura - Class in net.imagej.ops

Built-in op interfaces of the tamura namespace.

Ops.Tamura.Coarseness - Interface in net.imagej.ops

Base interface for "coarseness" operations.

Ops.Tamura.Contrast - Interface in net.imagej.ops

Base interface for "contrast" operations.

Ops.Tamura.Directionality - Interface in net.imagej.ops

Base interface for "directionality" operations.

Ops.Thread - Class in net.imagej.ops

Built-in op interfaces of the thread namespace.

Ops.Thread.Chunker - Interface in net.imagej.ops

Base interface for "chunker" operations.

Ops.Threshold - Class in net.imagej.ops

Built-in op interfaces of the threshold namespace.

Ops.Threshold.Apply - Interface in net.imagej.ops

Base interface for "apply" operations.

Ops.Threshold.Huang - Interface in net.imagej.ops

Base interface for "huang" operations.

Ops.Threshold.IJ1 - Interface in net.imagej.ops

Base interface for "ij1" operations.

Ops.Threshold.Intermodes - Interface in net.imagej.ops

Base interface for "intermodes" operations.

Ops.Threshold.IsoData - Interface in net.imagej.ops

Base interface for "isoData" operations.

Ops.Threshold.Li - Interface in net.imagej.ops

Base interface for "li" operations.

Ops.Threshold.LocalBernsenThreshold - Interface in net.imagej.ops

Base interface for "localBernsenThreshold" operations.

Ops.Threshold.LocalContrastThreshold - Interface in net.imagej.ops

Base interface for "localContrastThreshold" operations.

Ops.Threshold.LocalMeanThreshold - Interface in net.imagej.ops

Base interface for "localMeanThreshold" operations.

Ops.Threshold.LocalMedianThreshold - Interface in net.imagej.ops

Base interface for "localMedianThreshold" operations.

Ops.Threshold.LocalMidGreyThreshold - Interface in net.imagej.ops

Base interface for "localMidGreyThreshold" operations.

Ops.Threshold.LocalNiblackThreshold - Interface in net.imagej.ops

Base interface for "localNiblackThreshold" operations.

Ops.Threshold.LocalPhansalkarThreshold - Interface in net.imagej.ops

Base interface for "localPhansalkarThreshold" operations.

Ops.Threshold.LocalSauvolaThreshold - Interface in net.imagej.ops

Base interface for "localSauvolaThreshold" operations.

Ops.Threshold.MaxEntropy - Interface in net.imagej.ops

Base interface for "maxEntropy" operations.

Ops.Threshold.MaxLikelihood - Interface in net.imagej.ops

Base interface for "maxLikelihood" operations.

Ops.Threshold.Mean - Interface in net.imagej.ops

Base interface for "mean" operations.

Ops.Threshold.MinError - Interface in net.imagej.ops

Base interface for "minError" operations.

Ops.Threshold.Minimum - Interface in net.imagej.ops

Base interface for "minimum" operations.

Ops.Threshold.Moments - Interface in net.imagej.ops

Base interface for "moments" operations.

Ops.Threshold.Otsu - Interface in net.imagej.ops

Base interface for "otsu" operations.

Ops.Threshold.Percentile - Interface in net.imagej.ops

Base interface for "percentile" operations.

Ops.Threshold.RenyiEntropy - Interface in net.imagej.ops

Base interface for "renyiEntropy" operations.

Ops.Threshold.Rosin - Interface in net.imagej.ops

Base interface for "rosin" operations.

Ops.Threshold.Shanbhag - Interface in net.imagej.ops

Base interface for "shanbhag" operations.

Ops.Threshold.Triangle - Interface in net.imagej.ops

Base interface for "triangle" operations.

Ops.Threshold.Yen - Interface in net.imagej.ops

Base interface for "yen" operations.

Ops.Topology - Class in net.imagej.ops

Built-in op interfaces of the topology namespace.

Ops.Topology.BoxCount - Interface in net.imagej.ops

Base interface for "boxCount" operations.

Ops.Topology.EulerCharacteristic26N - Interface in net.imagej.ops

Base interface for "eulerCharacteristic26N" operations.

Ops.Topology.EulerCharacteristic26NFloating - Interface in net.imagej.ops

Base interface for "eulerCharacteristic26NFloating" operations.

Ops.Topology.EulerCorrection - Interface in net.imagej.ops

Base interface for "eulerCorrection" operations.

Ops.Transform - Class in net.imagej.ops

Built-in op interfaces of the transform namespace.

Ops.Transform.AddDimensionView - Interface in net.imagej.ops

Base interface for "addDimensionView" operations.

Ops.Transform.CollapseNumericView - Interface in net.imagej.ops

Base interface for "collapseNumericView" operations.

Ops.Transform.CollapseRealView - Interface in net.imagej.ops

Base interface for "collapseRealView" operations.

Ops.Transform.CollapseView - Interface in net.imagej.ops

Base interface for "collapseView" operations.

Ops.Transform.ConcatenateView - Interface in net.imagej.ops

Base interface for "concatenateView" operations.

Ops.Transform.Crop - Interface in net.imagej.ops

Base interface for "crop" operations.

Ops.Transform.DropSingletonDimensionsView - Interface in net.imagej.ops

Base interface for "dropSingletonDimensionsView" operations.

Ops.Transform.ExtendBorderView - Interface in net.imagej.ops

Base interface for "extendBorderView" operations.

Ops.Transform.ExtendMirrorDoubleView - Interface in net.imagej.ops

Base interface for "extendMirrorDoubleView" operations.

Ops.Transform.ExtendMirrorSingleView - Interface in net.imagej.ops

Base interface for "extendMirrorSingleView" operations.

Ops.Transform.ExtendPeriodicView - Interface in net.imagej.ops

Base interface for "extendPeriodicView" operations.

Ops.Transform.ExtendRandomView - Interface in net.imagej.ops

Base interface for "extendRandomView" operations.

Ops.Transform.ExtendValueView - Interface in net.imagej.ops

Base interface for "extendValueView" operations.

Ops.Transform.ExtendView - Interface in net.imagej.ops

Base interface for "extendView" operations.

Ops.Transform.ExtendZeroView - Interface in net.imagej.ops

Base interface for "extendZeroView" operations.

Ops.Transform.FlatIterableView - Interface in net.imagej.ops

Base interface for "flatIterableView" operations.

Ops.Transform.HyperSliceView - Interface in net.imagej.ops

Base interface for "hyperSliceView" operations.

Ops.Transform.InterpolateView - Interface in net.imagej.ops

Base interface for "interpolateView" operations.

Ops.Transform.IntervalView - Interface in net.imagej.ops

Base interface for "intervalView" operations.

Ops.Transform.InvertAxisView - Interface in net.imagej.ops

Base interface for "invertAxisView" operations.

Ops.Transform.IterableView - Interface in net.imagej.ops

Base interface for "iterableView" operations.

Ops.Transform.OffsetView - Interface in net.imagej.ops

Base interface for "offsetView" operations.

Ops.Transform.PermuteCoordinatesInverseView - Interface in net.imagej.ops

Base interface for "permuteCoordinatesInverseView" operations.

Ops.Transform.PermuteCoordinatesView - Interface in net.imagej.ops

Base interface for "permuteCoordinatesView" operations.

Ops.Transform.PermuteView - Interface in net.imagej.ops

Base interface for "permuteView" operations.

Ops.Transform.Project - Interface in net.imagej.ops

Base interface for "project" operations.

Ops.Transform.RasterView - Interface in net.imagej.ops

Base interface for "rasterView" operations.

Ops.Transform.RotateView - Interface in net.imagej.ops

Base interface for "rotateView" operations.

Ops.Transform.ScaleView - Interface in net.imagej.ops

Base interface for "scaleView" operations.

Ops.Transform.ShearView - Interface in net.imagej.ops

Base interface for "shearView" operations.

Ops.Transform.StackView - Interface in net.imagej.ops

Base interface for "stackView" operations.

Ops.Transform.SubsampleView - Interface in net.imagej.ops

Base interface for "subsampleView" operations.

Ops.Transform.TranslateView - Interface in net.imagej.ops

Base interface for "translateView" operations.

Ops.Transform.UnshearView - Interface in net.imagej.ops

Base interface for "unshearView" operations.

Ops.Transform.ZeroMinView - Interface in net.imagej.ops

Base interface for "zeroMinView" operations.

Ops.Zernike - Class in net.imagej.ops

Built-in op interfaces of the zernike namespace.

Ops.Zernike.Magnitude - Interface in net.imagej.ops

Base interface for "magnitude" operations.

Ops.Zernike.Phase - Interface in net.imagej.ops

Base interface for "phase" operations.

OpSearcher - Class in net.imagej.ops.search

Searcher plugin for ImageJ Ops.

OpSearcher() - Constructor for class net.imagej.ops.search.OpSearcher

OpSearchResult - Class in net.imagej.ops.search

Search result for the OpSearcher.

OpSearchResult(Context, OpInfo, String) - Constructor for class net.imagej.ops.search.OpSearchResult

OpService - Interface in net.imagej.ops

Interface for services that manage and execute Ops.

opString(String, Object...) - Static method in class net.imagej.ops.OpUtils

Gets a string describing the given op request.

opString(ModuleInfo) - Static method in class net.imagej.ops.OpUtils

Gets a string describing the given op.

opString(ModuleInfo, ModuleItem<?>) - Static method in class net.imagej.ops.OpUtils

Gets a string describing the given op, highlighting the specific parameter.

optionDialog(String, String, Object[], int) - Method in class net.imagej.ui.swing.updater.SwingUserInterface

optionDialog(String, String, Object[], int) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface

optionDialog(String, String, Object[], int) - Method in class net.imagej.updater.util.UpdaterUserInterface

optionDialog(String, String, Object[], int) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface

OptionsAppearance - Class in net.imagej.options

Runs the Edit::Options::Appearance dialog.

OptionsAppearance() - Constructor for class net.imagej.options.OptionsAppearance

OptionsArrowTool - Class in net.imagej.options

Runs the Edit::Options::Arrow Tool dialog.

OptionsArrowTool() - Constructor for class net.imagej.options.OptionsArrowTool

OptionsChannels - Class in net.imagej.options

Runs the Edit::Options::Channels dialog.

OptionsChannels() - Constructor for class net.imagej.options.OptionsChannels

OptionsCompatibility - Class in net.imagej.options

Runs the Edit::Options::Compatibility dialog.

OptionsCompatibility() - Constructor for class net.imagej.options.OptionsCompatibility

OptionsCompiler - Class in net.imagej.options

Runs the Edit::Options::Compiler dialog.

OptionsCompiler() - Constructor for class net.imagej.options.OptionsCompiler

OptionsConversions - Class in net.imagej.options

Runs the Edit::Options::Conversions dialog.

OptionsConversions() - Constructor for class net.imagej.options.OptionsConversions

OptionsDicom - Class in net.imagej.options

Runs the Edit::Options::DICOM dialog.

OptionsDicom() - Constructor for class net.imagej.options.OptionsDicom

OptionsFont - Class in net.imagej.options

Runs the Edit::Options::Fonts dialog.

OptionsFont() - Constructor for class net.imagej.options.OptionsFont

OptionsInputOutput - Class in net.imagej.options

Runs the Edit::Options::Input/Output dialog.

OptionsInputOutput() - Constructor for class net.imagej.options.OptionsInputOutput

OptionsLineWidth - Class in net.imagej.options

Runs the Edit::Options::Line Width dialog.

OptionsLineWidth() - Constructor for class net.imagej.options.OptionsLineWidth

OptionsMemoryAndThreads - Class in net.imagej.options

Runs the Edit::Options::Memory & Threads dialog.

OptionsMemoryAndThreads() - Constructor for class net.imagej.options.OptionsMemoryAndThreads

OptionsMisc - Class in net.imagej.options

Runs the Edit::Options::Misc dialog.

OptionsMisc() - Constructor for class net.imagej.options.OptionsMisc

OptionsOverlay - Class in net.imagej.options

Runs the Edit::Options::Overlay...

OptionsOverlay() - Constructor for class net.imagej.options.OptionsOverlay

OptionsPointTool - Class in net.imagej.options

Runs the Edit::Options::Point Tool dialog.

OptionsPointTool() - Constructor for class net.imagej.options.OptionsPointTool

OptionsProfilePlot - Class in net.imagej.options

Runs the Edit::Options::Profile Plot Options dialog.

OptionsProfilePlot() - Constructor for class net.imagej.options.OptionsProfilePlot

OptionsProxy - Class in net.imagej.options

Runs the Edit::Options::Proxy Settings dialog.

OptionsProxy() - Constructor for class net.imagej.options.OptionsProxy

OptionsReset - Class in net.imagej.options

Runs the Edit::Options::Reset dialog.

OptionsReset() - Constructor for class net.imagej.options.OptionsReset

OptionsRoundedRectangleTool - Class in net.imagej.options

Runs the Edit::Options::Rounded Rectangle Tool dialog.

OptionsRoundedRectangleTool() - Constructor for class net.imagej.options.OptionsRoundedRectangleTool

OptionsSynchronizer - Class in net.imagej.legacy

The options synchronizer bidirectionally synchronizes modern ImageJ options with legacy ImageJ settings and preferences.

OptionsSynchronizer(OptionsService) - Constructor for class net.imagej.legacy.OptionsSynchronizer

OptionsWandTool - Class in net.imagej.options

Runs the Edit::Options::Wand Tool dialog.

OptionsWandTool() - Constructor for class net.imagej.options.OptionsWandTool

OpUtils - Class in net.imagej.ops

Utility methods for working with ops.

or(RealMaskRealInterval) - Method in class net.imagej.omero.legacy.text.OMEROText

or(Predicate<? super RealLocalizable>) - Method in class net.imagej.omero.legacy.text.OMEROText

or(RealMaskRealInterval) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper

or(Predicate<? super RealLocalizable>) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper

Or() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.Or

Or() - Constructor for class net.imagej.ops.logic.IIToIIOutputII.Or

Or() - Constructor for class net.imagej.ops.logic.IIToRAIOutputII.Or

or(boolean, boolean) - Method in class net.imagej.ops.logic.LogicNamespace

or(T, T) - Method in class net.imagej.ops.logic.LogicNamespace

or(T, T, T) - Method in class net.imagej.ops.logic.LogicNamespace

or(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace

or(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace

or(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace

or(IterableInterval<T>, IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace

Or() - Constructor for class net.imagej.ops.math.BinaryRealTypeMath.Or

or(int, int) - Method in class net.imagej.ops.math.MathNamespace

or(long, long) - Method in class net.imagej.ops.math.MathNamespace

or(O, I1, I2) - Method in class net.imagej.ops.math.MathNamespace

or(Overlay) - Method in class net.imagej.overlay.CompositeOverlay

or(FilesCollection.Filter, FilesCollection.Filter) - Method in class net.imagej.updater.FilesCollection

OrDataValuesWith<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign

Fills an output Dataset by ORing an input Dataset with a user defined constant value.

OrDataValuesWith() - Constructor for class net.imagej.plugins.commands.assign.OrDataValuesWith

order - Variable in class net.imagej.ops.features.zernike.AbstractZernikeFeature

orientation - Variable in class net.imagej.ops.features.haralick.AbstractHaralickFeature

origin() - Method in class net.imagej.axis.DefaultLinearAxis

origin() - Method in interface net.imagej.axis.LinearAxis

originalArguments - Static variable in class net.imagej.launcher.ClassLauncher

originalUpdateSite - Variable in class net.imagej.updater.FileObject

originMax(int) - Method in class net.imagej.plugins.commands.imglib.ResliceImage

Returns true if the origin point of the reslicing for the user specified axis is to be the largest value of the axis.

originMin(int) - Method in class net.imagej.plugins.commands.imglib.ResliceImage

Returns true if the origin point of the reslicing for the user specified axis is to be the smallest value of the axis.

OrthogonalViews - Class in net.imagej.plugins.commands.display.interactive

Place holder for the future implementation of the Orthogonal Views command.

OrthogonalViews() - Constructor for class net.imagej.plugins.commands.display.interactive.OrthogonalViews

Otsu() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Otsu

otsu(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

otsu(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

otsu(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

otsu(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

otsu(IterableInterval, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

otsu(IterableInterval, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

out() - Method in class net.imagej.ops.special.computer.AbstractBinaryComputerOp

out() - Method in class net.imagej.ops.special.computer.AbstractNullaryComputerOp

out() - Method in class net.imagej.ops.special.computer.AbstractUnaryComputerOp

out() - Method in class net.imagej.ops.special.function.AbstractBinaryFunctionOp

out() - Method in class net.imagej.ops.special.function.AbstractNullaryFunctionOp

out() - Method in class net.imagej.ops.special.function.AbstractUnaryFunctionOp

out() - Method in class net.imagej.ops.special.hybrid.AbstractBinaryHybridC

out() - Method in class net.imagej.ops.special.hybrid.AbstractNullaryHybridCF

out() - Method in class net.imagej.ops.special.hybrid.AbstractUnaryHybridC

out() - Method in class net.imagej.ops.special.inplace.AbstractBinaryInplace1Op

out() - Method in class net.imagej.ops.special.inplace.AbstractUnaryInplaceOp

out() - Method in interface net.imagej.ops.special.Output

out - Variable in class net.imagej.updater.util.InputStream2OutputStream

outline(RandomAccessibleInterval<BitType>, RandomAccessibleInterval, Boolean) - Method in class net.imagej.ops.morphology.MorphologyNamespace

outline(RandomAccessibleInterval, Boolean) - Method in class net.imagej.ops.morphology.MorphologyNamespace

Outline> - Class in net.imagej.ops.morphology.outline

The Op creates an output interval where the objects are hollow versions from the input.

Outline() - Constructor for class net.imagej.ops.morphology.outline.Outline

outMax - Variable in class net.imagej.ops.convert.normalizeScale.NormalizeScaleRealTypes

outMin - Variable in class net.imagej.ops.convert.scale.ScaleRealTypes

OutOfBoundsFactoryMixIn() - Constructor for class net.imagej.server.mixins.Mixins.OutOfBoundsFactoryMixIn

Output<O> - Interface in net.imagej.ops.special

Interface for objects with a typed output parameter.

output - Variable in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin

OutputAlgorithm<T> - Interface in net.imagej.plugins.commands.imglib

TODO - This interface was created from ImgLib's Algorithm + OutputAlgorithm.

outputMask() - Method in class net.imagej.plugins.commands.binary.Binarize

Gets the output mask.

OutputMutable<O> - Interface in net.imagej.ops.special

Interface for Output objects whose typed output parameter is mutable.

outputs() - Method in class net.imagej.ops.OpCandidate

Gets the op's output parameters.

outputs() - Method in class net.imagej.ops.OpInfo

Gets the op's output parameters.

outputs(ModuleInfo) - Static method in class net.imagej.ops.OpUtils

Gets the given ModuleInfo's list of outputs.

outputs() - Method in class net.imagej.server.mixins.Mixins.ModuleInfoMixIn

OUTSIDE - Static variable in class net.imagej.plugins.commands.binary.Binarize

OvalRoiToEllipsoidConverter - Class in net.imagej.legacy.convert.roi.ellipsoid

Converts an ImageJ 1.x OvalRoi to an ImgLib2 Ellipsoid.

OvalRoiToEllipsoidConverter() - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiToEllipsoidConverter

OvalRoiToEllipsoidOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.OvalRoiToEllipsoidOMEROConverter

OvalRoiWrapper - Class in net.imagej.legacy.convert.roi.ellipsoid

Wraps an ImageJ 1.x OvalRoi as an ImgLib2 Ellipsoid.

OvalRoiWrapper(int, int, int, int) - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

Creates an ImageJ 1.x OvalRoi and then wraps it as an ImgLib2 Ellipsoid.

OvalRoiWrapper(double, double, double, double) - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

Creates an ImageJ 1.x OvalRoi and then wraps it as an ImgLib2 Ellipsoid.

OvalRoiWrapper(OvalRoi) - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

Wraps the given ImageJ 1.x OvalRoi as an ImgLib2 Ellipsoid.

OvalRoiWrapperToEllipseData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.OvalRoiWrapperToEllipseData

overlay() - Method in class net.imagej.ImageJ

Gets this application context's OverlayService.

Overlay - Interface in net.imagej.overlay

An overlay is a vector object, typically displayed with Datasets.

Overlay.ArrowStyle - Enum in net.imagej.overlay

Arrow decorations for the start and end.

Overlay.LineStyle - Enum in net.imagej.overlay

The style used to render the bounding line of the overlay.

OverlayCreatedEvent - Class in net.imagej.event

An event indicating a new Overlay has been created.

OverlayCreatedEvent(Overlay) - Constructor for class net.imagej.event.OverlayCreatedEvent

OverlayDeletedEvent - Class in net.imagej.event

An event indicating an Overlay has been deleted.

OverlayDeletedEvent(Overlay) - Constructor for class net.imagej.event.OverlayDeletedEvent

OverlayFigureView - Class in net.imagej.ui.swing.viewer.image

A figure view that links an ImageJ OverlayView to a JHotDraw Figure.

OverlayFigureView(SwingImageDisplayViewer, OverlayView) - Constructor for class net.imagej.ui.swing.viewer.image.OverlayFigureView

Constructor to use to discover the figure to use for an overlay

OverlayFigureView(SwingImageDisplayViewer, OverlayView, Figure) - Constructor for class net.imagej.ui.swing.viewer.image.OverlayFigureView

Constructor to use if the figure already exists, for instance if it was created using the CreationTool

OverlayHarmonizer - Class in net.imagej.legacy.translate

Deprecated.

OverlayHarmonizer(Context) - Constructor for class net.imagej.legacy.translate.OverlayHarmonizer

Deprecated.

OverlayInfo - Class in net.imagej.display

This class defines what information is stored in an OverlayInfoList.

OverlayInfo(Overlay) - Constructor for class net.imagej.display.OverlayInfo

OverlayInfo(Overlay, boolean) - Constructor for class net.imagej.display.OverlayInfo

OverlayInfoList - Class in net.imagej.display

Stores data that is used by various OverlayManager implementations.

OverlayInfoList() - Constructor for class net.imagej.display.OverlayInfoList

OverlayLabels - Class in net.imagej.plugins.commands.overlay

Place holder for the future implementation of the Overlay Labels command.

OverlayLabels() - Constructor for class net.imagej.plugins.commands.overlay.OverlayLabels

OverlayManager - Class in net.imagej.ui.swing.commands

Command to pop up the SwingOverlayManager.

OverlayManager() - Constructor for class net.imagej.ui.swing.commands.OverlayManager

OverlayPreprocessor - Class in net.imagej.legacy.plugin

Injects the Overlay of the current ImagePlus when a single Overlay is declared as a parameter.

OverlayPreprocessor() - Constructor for class net.imagej.legacy.plugin.OverlayPreprocessor

OverlayProperties - Class in net.imagej.plugins.commands.overlay

A plugin to change the properties (e.g., line color, line width) of a set of overlays selected in an image display.

OverlayProperties() - Constructor for class net.imagej.plugins.commands.overlay.OverlayProperties

OverlayRestructuredEvent - Class in net.imagej.event

An event indicating an Overlay's dimensional extents may have changed.

OverlayRestructuredEvent(Overlay) - Constructor for class net.imagej.event.OverlayRestructuredEvent

OverlayService - Interface in net.imagej.display

Interface for service that works with Overlays.

overlayService - Variable in class net.imagej.plugins.commands.assign.MathCommand

OverlaySettings - Class in net.imagej.overlay

Utility class that gives access to default overlay settings such as fill, transparency, arrow styles, etc.

OverlaySettings() - Constructor for class net.imagej.overlay.OverlaySettings

OverlayToROITree - Class in net.imagej.omero.legacy.convert

Converts an Overlay to a ROITree.

OverlayToROITree() - Constructor for class net.imagej.omero.legacy.convert.OverlayToROITree

OverlayToROITreeConverter - Class in net.imagej.legacy.convert

Converts an Overlay to a ROITree.

OverlayToROITreeConverter() - Constructor for class net.imagej.legacy.convert.OverlayToROITreeConverter

OverlayUpdatedEvent - Class in net.imagej.event

An event indicating an Overlay's data has been updated.

OverlayUpdatedEvent(Overlay) - Constructor for class net.imagej.event.OverlayUpdatedEvent

OverlayView - Interface in net.imagej.display

A linkage between an Overlay and a Display.

overriddenUpdateSites - Variable in class net.imagej.updater.FileObject

overrides - Variable in class net.imagej.updater.Dependency

overridesOtherUpdateSite() - Method in class net.imagej.updater.FileObject

overwriteWithUpdated(FilesCollection, FileObject) - Method in class net.imagej.ui.swing.updater.ImageJUpdater

P

PadAndConvolveFFT & NativeType,O extends RealType<O> & NativeType<O>,K extends RealType<K> & NativeType<K>,C extends ComplexType<C> & NativeType<C>> - Class in net.imagej.ops.filter.convolve

Convolve op for (@link Img)

PadAndConvolveFFT() - Constructor for class net.imagej.ops.filter.convolve.PadAndConvolveFFT

PadAndConvolveFFTF,O extends RealType<O> & NativeType<O>,K extends RealType<K>> - Class in net.imagej.ops.filter.convolve

Function adapter for PadAndConvolveFFT.

PadAndConvolveFFTF() - Constructor for class net.imagej.ops.filter.convolve.PadAndConvolveFFTF

PadAndCorrelateFFT & NativeType,O extends RealType<O> & NativeType<O>,K extends RealType<K> & NativeType<K>,C extends ComplexType<C> & NativeType<C>> - Class in net.imagej.ops.filter.correlate

Correlate op for (@link Img)

PadAndCorrelateFFT() - Constructor for class net.imagej.ops.filter.correlate.PadAndCorrelateFFT

PadAndRichardsonLucy & NativeType,O extends RealType<O> & NativeType<O>,K extends RealType<K> & NativeType<K>,C extends ComplexType<C> & NativeType<C>> - Class in net.imagej.ops.deconvolve

Richardson Lucy function op that operates on (@link RandomAccessibleInterval) (Lucy, L.

PadAndRichardsonLucy() - Constructor for class net.imagej.ops.deconvolve.PadAndRichardsonLucy

PadAndRichardsonLucyTV & NativeType,O extends RealType<O> & NativeType<O>,K extends RealType<K> & NativeType<K>,C extends ComplexType<C> & NativeType<C>> - Class in net.imagej.ops.deconvolve

Richardson Lucy with total variation function op that operates on (@link RandomAccessibleInterval) (Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution Microsc Res Rech 2006 Apr; 69(4)- 260-6)

PadAndRichardsonLucyTV() - Constructor for class net.imagej.ops.deconvolve.PadAndRichardsonLucyTV

padArgs(OpCandidate) - Method in class net.imagej.ops.DefaultOpMatchingService

padArgs(OpCandidate) - Method in interface net.imagej.ops.OpMatchingService

Checks the number of args, padding optional args with null as needed.

paddingIntervalCentered(RandomAccessibleInterval<T>, Dimensions) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "paddingIntervalCentered" operation on the given arguments.

PaddingIntervalCentered<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends Interval> - Class in net.imagej.ops.filter.pad

Op used to calculate and return a centered padding interval given an input RAI and the desired padded dimensions

PaddingIntervalCentered() - Constructor for class net.imagej.ops.filter.pad.PaddingIntervalCentered

paddingIntervalOrigin(RandomAccessibleInterval<T>, Interval) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "paddingIntervalOrigin" operation on the given arguments.

PaddingIntervalOrigin<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends Interval> - Class in net.imagej.ops.filter.pad

Op used to translate the center of an interval the origin.

PaddingIntervalOrigin() - Constructor for class net.imagej.ops.filter.pad.PaddingIntervalOrigin

padFFTInput(RandomAccessibleInterval<T>, Dimensions) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "padInputFFT" filter operation on the given arguments.

padFFTInput(RandomAccessibleInterval<T>, Dimensions, boolean) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "padInputFFT" filter operation on the given arguments.

padFFTInput(RandomAccessibleInterval<T>, Dimensions, boolean, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "padInputFFT" filter operation on the given arguments.

padInput(RandomAccessibleInterval<T>, Dimensions) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "padInput" filter operation on the given arguments.

padInput(RandomAccessibleInterval<T>, Dimensions, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "padInput" filter operation on the given arguments.

PadInput<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.filter.pad

Op used to pad the image by extending the borders

PadInput() - Constructor for class net.imagej.ops.filter.pad.PadInput

PadInputFFT<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.filter.pad

Abstract Op used to pad the image by extending the borders optionally using an "fftSize" op to make the final image size compatible with an FFT library.

PadInputFFT() - Constructor for class net.imagej.ops.filter.pad.PadInputFFT

PadInputFFTMethods<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.filter.pad

Op used to pad the image to a size that is compatible with FFTMethods

PadInputFFTMethods() - Constructor for class net.imagej.ops.filter.pad.PadInputFFTMethods

padShiftFFTKernel(RandomAccessibleInterval<T>, Dimensions) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "padShiftFFTKernel" filter operation on the given arguments.

padShiftFFTKernel(RandomAccessibleInterval<T>, Dimensions, boolean) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "padShiftFFTKernel" filter operation on the given arguments.

PadShiftKernel<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.filter.pad

Op used to pad a kernel and shift the center of the kernel to the origin

PadShiftKernel() - Constructor for class net.imagej.ops.filter.pad.PadShiftKernel

PadShiftKernelFFTMethods<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.filter.pad

Op used to pad a kernel to a size that is compatible with FFTMethods and shift the center of the kernel to the origin

PadShiftKernelFFTMethods() - Constructor for class net.imagej.ops.filter.pad.PadShiftKernelFFTMethods

PaintBrushTool - Class in net.imagej.plugins.tools

Tool implementation for paint brush.

PaintBrushTool() - Constructor for class net.imagej.plugins.tools.PaintBrushTool

PaintBrushToolConfig - Class in net.imagej.plugins.tools

Implements the configuration code for PaintBrushTool.

PaintBrushToolConfig() - Constructor for class net.imagej.plugins.tools.PaintBrushToolConfig

paintComponent(Graphics) - Method in class net.imagej.ui.swing.SwingColorBar

pan(RealCoords) - Method in class net.imagej.display.DefaultImageCanvas

pan(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas

pan(RealCoords) - Method in interface net.imagej.display.Pannable

Adjusts the pan by the given (X, Y) amount.

pan(IntCoords) - Method in interface net.imagej.display.Pannable

Adjusts the pan by the given (X, Y) amount in panel space.

PanActivator - Class in net.imagej.plugins.tools

Tool for activating the pan tool in response to the space bar.

PanActivator() - Constructor for class net.imagej.plugins.tools.PanActivator

panel - Variable in class net.imagej.ui.swing.updater.ConflictDialog

panel - Variable in class net.imagej.ui.swing.updater.DiffView

panelToDataCoords(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas

panelToDataCoords(IntCoords) - Method in interface net.imagej.display.ImageCanvas

Converts the given panel coordinates into data coordinates.

Pannable - Interface in net.imagej.display

Defines methods needed to adjust the pan position of a viewport, such as an ImageCanvas.

panReset() - Method in class net.imagej.display.DefaultImageCanvas

panReset() - Method in interface net.imagej.display.Pannable

Resets the pan origin to the center of the display.

PanTool - Class in net.imagej.plugins.tools

Tool for panning the display.

PanTool() - Constructor for class net.imagej.plugins.tools.PanTool

PanZoomEvent - Class in net.imagej.display.event

An event indicating a pan and/or zoom change has happened to an ImageCanvas.

PanZoomEvent(ImageCanvas) - Constructor for class net.imagej.display.event.PanZoomEvent

Parallel - Interface in net.imagej.ops

Base interface for Ops that run across multiple threads.

parameterChanged() - Method in class net.imagej.plugins.commands.restructure.AddData

parameterChanged() - Method in class net.imagej.plugins.commands.restructure.DeleteData

params() - Method in class net.imagej.omero.ModuleAdapter

Parses script parameters for the associated ImageJ module.

parens(Object[]) - Method in class net.imagej.ops.eval.OpEvaluator

parent() - Method in class net.imagej.omero.roi.DefaultOMEROROICollection

parent() - Method in class net.imagej.omero.roi.DefaultOMEROROIElement

parent() - Method in class net.imagej.omero.roi.LazyROITree

parent() - Method in class net.imagej.ops.CustomOpEnvironment

parent() - Method in interface net.imagej.ops.OpEnvironment

The parent context, if any.

parent() - Method in interface net.imagej.roi.ROITree

parseObject(Object) - Method in class net.imagej.server.services.DefaultJsonService

parseObject(Object) - Method in interface net.imagej.server.services.JsonService

Parses the given Object.

Parser() - Constructor for class net.imagej.omero.OMEROFormat.Parser

partialDerivative(RandomAccessibleInterval<T>, int) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "partial derivative" operation on the given arguments

partialDerivative(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, int) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "partial derivative" operation on the given arguments

PartialDerivativeRAI<T extends RealType<T>> - Class in net.imagej.ops.filter.derivative

Calculates the derivative (with sobel kernel) of an image in a given dimension.

PartialDerivativeRAI() - Constructor for class net.imagej.ops.filter.derivative.PartialDerivativeRAI

PartialDerivativesRAI<T extends RealType<T>> - Class in net.imagej.ops.filter.derivative

Convenience op for partial derivatives.

PartialDerivativesRAI() - Constructor for class net.imagej.ops.filter.derivative.PartialDerivativesRAI

particleAnalyzerFill(long, long, long[], double, double, DrawingTool, RealRect) - Method in class net.imagej.FloodFiller

In IJ1 this method is used by the particle analyzer to remove interior holes from particle masks.

particularEquation() - Method in interface net.imagej.axis.CalibratedAxis

Gets the particular equation representing values along this axis; for instance: y = (14)*x + (4).

particularEquation() - Method in class net.imagej.axis.EnumeratedAxis

particularEquation() - Method in class net.imagej.axis.VariableAxis

patchIJ1(ClassLoader) - Static method in class net.imagej.launcher.ClassLauncher

patchInfoPList(File, String) - Static method in class net.imagej.updater.util.UpdaterUtil

pearsons(Iterable<T>, Iterable) - Method in class net.imagej.ops.coloc.ColocNamespace

PencilTool - Class in net.imagej.plugins.tools

Tool implementation for pencil.

PencilTool() - Constructor for class net.imagej.plugins.tools.PencilTool

PencilToolConfig - Class in net.imagej.plugins.tools

Implements the configuration code for PencilTool.

PencilToolConfig() - Constructor for class net.imagej.plugins.tools.PencilToolConfig

percentile(Iterable<T>, double) - Method in class net.imagej.ops.stats.StatsNamespace

percentile(O, Iterable<T>, double) - Method in class net.imagej.ops.stats.StatsNamespace

Percentile() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Percentile

percentile(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

percentile(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

percentile(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

percentile(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

percentile(IterableInterval, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

percentile(IterableInterval, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

PerformanceProfiler - Class in net.imagej.patcher

A Javassist-backed performance profiler.

PerformanceProfiler() - Constructor for class net.imagej.patcher.PerformanceProfiler

The constructor.

PermuteCoordinateInverseViewOfDimension<T> - Class in net.imagej.ops.transform.permuteCoordinatesInverseView

Wraps the Views.permuteCoordinateInverse(RandomAccessibleInterval, int[], int) method.

PermuteCoordinateInverseViewOfDimension() - Constructor for class net.imagej.ops.transform.permuteCoordinatesInverseView.PermuteCoordinateInverseViewOfDimension

permuteCoordinatesInverseView(RandomAccessibleInterval<T>, int[], int) - Method in class net.imagej.ops.transform.TransformNamespace

Inverse bijective permutation of the integer coordinates of one dimension of a RandomAccessibleInterval.

permuteCoordinatesInverseView(RandomAccessibleInterval<T>, int...) - Method in class net.imagej.ops.transform.TransformNamespace

Inverse Bijective permutation of the integer coordinates in each dimension of a RandomAccessibleInterval.

permuteCoordinatesView(RandomAccessibleInterval<T>, int...) - Method in class net.imagej.ops.transform.TransformNamespace

Bijective permutation of the integer coordinates in each dimension of a RandomAccessibleInterval.

permuteCoordinatesView(RandomAccessibleInterval<T>, int[], int) - Method in class net.imagej.ops.transform.TransformNamespace

Bijective permutation of the integer coordinates of one dimension of a RandomAccessibleInterval.

PermuteCoordinatesViewOfDimension<T> - Class in net.imagej.ops.transform.permuteCoordinatesView

Wraps the Views.permuteCoordinates(RandomAccessibleInterval, int[], int) method.

PermuteCoordinatesViewOfDimension() - Constructor for class net.imagej.ops.transform.permuteCoordinatesView.PermuteCoordinatesViewOfDimension

permuteView(RandomAccessible<T>, int, int) - Method in class net.imagej.ops.transform.TransformNamespace

Create view with permuted axes.

permuteView(RandomAccessibleInterval<T>, int, int) - Method in class net.imagej.ops.transform.TransformNamespace

Create view with permuted axes while preserving interval bounds.

phase(IterableInterval<T>, int, int) - Method in class net.imagej.ops.features.zernike.ZernikeNamespace

phase(O, IterableInterval<T>, int, int) - Method in class net.imagej.ops.features.zernike.ZernikeNamespace

PI() - Method in class net.imagej.types.BigComplex

Fills self with the representation of pi for the given type.

pickNewest(List<Checksummer.StringAndFile>) - Static method in class net.imagej.updater.Checksummer

PixelProbe - Class in net.imagej.plugins.tools

Displays pixel values under the cursor.

PixelProbe() - Constructor for class net.imagej.plugins.tools.PixelProbe

PixelRecorder - Class in net.imagej.plugins.tools

Gathers pixel information (location, channel values) of pixel associated with a given mouse event.

PixelRecorder(Context, boolean) - Constructor for class net.imagej.plugins.tools.PixelRecorder

Constructor

Placeholder - Class in net.imagej.omero.legacy

Placeholder() - Constructor for class net.imagej.omero.legacy.Placeholder

plain - Variable in class net.imagej.ui.swing.updater.FileTable

PlanarCommand - Interface in net.imagej.command

Interface marking commands that can be toggled to run on the current plane, instead of a complete image.

planeCount(ImgPlus<?>) - Static method in class net.imagej.plugins.commands.restructure.RestructureUtils

Returns the number of planes present in an ImgPlus

platform - Variable in class net.imagej.updater.util.UpdaterUtil

platformForLauncher(String) - Static method in class net.imagej.updater.util.UpdaterUtil

platforms - Variable in class net.imagej.updater.util.UpdaterUtil

playSong() - Method in class net.imagej.plugins.commands.debug.ButtonDemo

plot(Histogram1d<?>...) - Static method in class net.imagej.notebook.chart.Charts

plot(List<Histogram1d<?>>) - Static method in class net.imagej.notebook.chart.Charts

PLYMeshIO - Class in net.imagej.mesh.io.ply

A plugin for reading and writing PLY files.

PLYMeshIO() - Constructor for class net.imagej.mesh.io.ply.PLYMeshIO

PNGObject - Interface in net.imagej.notebook.mime

An object that knows how to base64-encode itself as a PNG image.

pnpoly(List<Point2D.Double>, RealLocalizable) - Static method in class net.imagej.omero.roi.polyshape.Polyshapes

pnpolyWithBoundary(List<Point2D.Double>, RealLocalizable, boolean) - Static method in class net.imagej.omero.roi.polyshape.Polyshapes

point(RealLocalizable) - Static method in class net.imagej.omero.roi.polyshape.Polyshapes

PointFigure - Class in net.imagej.ui.swing.overlay

Implementation of a point as a JHotDraw figure.

PointFigure() - Constructor for class net.imagej.ui.swing.overlay.PointFigure

PointFigure(double[]) - Constructor for class net.imagej.ui.swing.overlay.PointFigure

PointFigure(List<double[]>) - Constructor for class net.imagej.ui.swing.overlay.PointFigure

PointJHotDrawOverlay - Class in net.imagej.ui.swing.overlay

JHotDraw adapter for point tool.

PointJHotDrawOverlay() - Constructor for class net.imagej.ui.swing.overlay.PointJHotDrawOverlay

pointMask(double[]) - Method in interface net.imagej.roi.ROIService

Creates a WritablePointMask at the given location.

pointMask(RealLocalizable) - Method in interface net.imagej.roi.ROIService

Creates a WritablePointMask at the given location.

PointMaskToPointRoiConverter - Class in net.imagej.legacy.convert.roi.point

Converts a PointMask to a PointRoi.

PointMaskToPointRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.point.PointMaskToPointRoiConverter

PointMaskWrapper - Class in net.imagej.legacy.convert.roi.point

A PointRoi with an associated WritablePointMask.

PointMaskWrapper(WritablePointMask) - Constructor for class net.imagej.legacy.convert.roi.point.PointMaskWrapper

PointOverlay - Class in net.imagej.overlay

Represents a user specified collection of points

PointOverlay() - Constructor for class net.imagej.overlay.PointOverlay

PointOverlay(Context) - Constructor for class net.imagej.overlay.PointOverlay

PointOverlay(Context, List<double[]>) - Constructor for class net.imagej.overlay.PointOverlay

PointOverlay(Context, double[]) - Constructor for class net.imagej.overlay.PointOverlay

PointRoiToRealPointCollectionConverter - Class in net.imagej.legacy.convert.roi.point

Converts an ImageJ 1.x PointRoi to an ImgLib2 RealPointCollection.

PointRoiToRealPointCollectionConverter() - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiToRealPointCollectionConverter

PointRoiToRealPointCollectionOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.PointRoiToRealPointCollectionOMEROConverter

PointRoiWrapper - Class in net.imagej.legacy.convert.roi.point

Wraps an ImageJ 1.x PointRoi as an ImgLib2 RealPointCollection.

PointRoiWrapper(int[], int[], int) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper

Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.

PointRoiWrapper(float[], float[], int) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper

Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.

PointRoiWrapper(float[], float[]) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper

Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.

PointRoiWrapper(FloatPolygon) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper

Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.

PointRoiWrapper(Polygon) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper

Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.

PointRoiWrapper(int, int) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper

Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.

PointRoiWrapper(double, double) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper

Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.

PointRoiWrapper(PointRoi) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper

Wraps the given ImageJ 1.x PointRoi as an ImgLib2 RealPointCollection.

points() - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper

PointSetDemo - Class in net.imagej.plugins.commands.debug

A test of TextSpecifiedPointSets

PointSetDemo() - Constructor for class net.imagej.plugins.commands.debug.PointSetDemo

PointsIOPlugin - Interface in net.imagej.mesh.io

A plugin which reads and/or writes point clouds as List<RealLocalizable> objects.

polygon2D(List<? extends RealLocalizable>) - Method in interface net.imagej.roi.ROIService

Creates a WritablePolygon2D with unspecified boundary behavior.

polygon2D(double[], double[]) - Method in interface net.imagej.roi.ROIService

Creates a WritablePolygon2D with unspecified boundary behavior.

Polygon2DToPolygonRoiConverter - Class in net.imagej.legacy.convert.roi.polygon2d

Converts a Polygon2D to a PolygonRoi of type POLYGON.

Polygon2DToPolygonRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.polygon2d.Polygon2DToPolygonRoiConverter

Polygon2DWrapper - Class in net.imagej.legacy.convert.roi.polygon2d

A PolygonRoi with an associated WritablePolygon2D.

Polygon2DWrapper(WritablePolygon2D) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.Polygon2DWrapper

PolygonFigure - Class in net.imagej.ui.swing.overlay

TODO

PolygonFigure() - Constructor for class net.imagej.ui.swing.overlay.PolygonFigure

PolygonJHotDrawAdapter - Class in net.imagej.ui.swing.overlay

JHotDraw adapter for polygon/freehand overlays.

PolygonJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter

PolygonNodeHandle - Class in net.imagej.ui.swing.overlay

The BezierFigure uses a BezierNodeHandle which can change the curve connecting vertices from a line to a Bezier curve.

PolygonNodeHandle(BezierFigure, int, Figure) - Constructor for class net.imagej.ui.swing.overlay.PolygonNodeHandle

PolygonNodeHandle(BezierFigure, int) - Constructor for class net.imagej.ui.swing.overlay.PolygonNodeHandle

PolygonOverlay - Class in net.imagej.overlay

TODO

PolygonOverlay() - Constructor for class net.imagej.overlay.PolygonOverlay

PolygonOverlay(Context) - Constructor for class net.imagej.overlay.PolygonOverlay

PolygonRoiToPolygon2DConverter - Class in net.imagej.legacy.convert.roi.polygon2d

Converts an ImageJ 1.x PolygonRoi of type: Roi.POLYGON Roi.TRACED_ROI Roi.FREEROI to an ImgLib2 Polygon2D.

PolygonRoiToPolygon2DConverter() - Constructor for class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiToPolygon2DConverter

PolygonRoiToPolygon2DOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.PolygonRoiToPolygon2DOMEROConverter

PolygonRoiWrapper - Class in net.imagej.legacy.convert.roi.polygon2d

Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polygon2D.

PolygonRoiWrapper(int[], int[], int) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polygon2D.

PolygonRoiWrapper(float[], float[], int) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polygon2D.

PolygonRoiWrapper(float[], float[]) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polygon2D.

PolygonRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polygon2D.

PolygonRoiWrapperToPolygonData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.PolygonRoiWrapperToPolygonData

polyline(List<? extends RealLocalizable>) - Method in interface net.imagej.roi.ROIService

Creates a WritablePolyline containing the given vertices, in the given order.

PolylineFigure - Class in net.imagej.ui.swing.overlay

JHotDraw Figure for a multi-segmented line

PolylineFigure() - Constructor for class net.imagej.ui.swing.overlay.PolylineFigure

PolylineJHotDrawAdapter - Class in net.imagej.ui.swing.overlay

JHotDraw adapter for multi-segmented lines

PolylineJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter

PolylineRoiToPolylineConverter - Class in net.imagej.legacy.convert.roi.polyline

Converts an ImageJ 1.x PolygonRoi to an ImgLib2 Polyline.

PolylineRoiToPolylineConverter() - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiToPolylineConverter

PolylineRoiToPolylineOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.PolylineRoiToPolylineOMEROConverter

PolylineRoiToRealMaskRealIntervalConverter - Class in net.imagej.legacy.convert.roi.polyline

Converts an ImageJ 1.x PolygonRoi to an ImgLib2 RealMaskRealInterval.

PolylineRoiToRealMaskRealIntervalConverter() - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiToRealMaskRealIntervalConverter

PolylineRoiToRealMaskRealIntervalOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.PolylineRoiToRealMaskRealIntervalOMEROConverter

PolylineRoiWrapper - Class in net.imagej.legacy.convert.roi.polyline

Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polyline.

PolylineRoiWrapper(int[], int[], int) - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polyline.

PolylineRoiWrapper(float[], float[], int) - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polyline.

PolylineRoiWrapper(float[], float[]) - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polyline.

PolylineRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polyline.

PolylineRoiWrapperToPolylineData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.PolylineRoiWrapperToPolylineData

PolylineToPolylineRoiConverter - Class in net.imagej.legacy.convert.roi.polyline

Converts an Polyline to an PolygonRoi of type POLYLINE.

PolylineToPolylineRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineToPolylineRoiConverter

PolylineWrapper - Class in net.imagej.legacy.convert.roi.polyline

A PolygonRoi with an associated WritablePolyline.

PolylineWrapper(WritablePolyline) - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineWrapper

Polynom - Class in net.imagej.ops.features.zernike.helper

class used to represent a zernike moment polynomial.

Polynom(int) - Constructor for class net.imagej.ops.features.zernike.helper.Polynom

default constructor.

PolynomialAxis - Class in net.imagej.axis

PolynomialAxis is a CalibratedAxis that scale nonlinearly as a polynomial of degree >= 2.

PolynomialAxis() - Constructor for class net.imagej.axis.PolynomialAxis

PolynomialAxis(AxisType, String, double...) - Constructor for class net.imagej.axis.PolynomialAxis

Polyshapes - Class in net.imagej.omero.roi.polyshape

Utility class for polygon

Polyshapes() - Constructor for class net.imagej.omero.roi.polyshape.Polyshapes

POMParser - Class in net.imagej.updater

A helper class to read information from Maven-built .jar files.

POMParser(FileObject) - Constructor for class net.imagej.updater.POMParser

populateImageJColumn(Class<?>, Object[], Column<?>) - Static method in class net.imagej.omero.TableUtils

populateImageMetadata() - Method in class net.imagej.omero.OMEROFormat.Metadata

populateInput(Module, ModuleItem<?>, File) - Method in class net.imagej.batch.input.DatasetBatchInputProvider

populateInputCandidates(Collection<Object>) - Method in class net.imagej.legacy.convert.DatasetToImagePlusConverter

populateInputCandidates(Collection<Object>) - Method in class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter

populateInputCandidates(Collection<Object>) - Method in class net.imagej.legacy.convert.ImagePlusToDatasetConverter

populateInputCandidates(Collection<Object>) - Method in class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter

populateInputCandidates(Collection<Object>) - Method in class net.imagej.legacy.convert.ImageTitleToImagePlusConverter

populateOMEROColumn(Column<?>, ConvertService) - Static method in class net.imagej.omero.TableUtils

Port() - Constructor for class net.imagej.legacy.LegacyCommandline.Port

pos(Object) - Method in class net.imagej.ops.eval.OpEvaluator

Position - Class in net.imagej

A Position is used to move within a given reference Extents object.

Position(Extents) - Constructor for class net.imagej.Position

Constructor - takes an Extents object that represents the parent space to iterate within.

Position(Position) - Constructor for class net.imagej.Position

Constructs a position that is a copy of the given position.

PositionableByAxis - Interface in net.imagej

An element that is Positionable and Localizable in N-dimensional discrete space, by both dimension number and axis type.

positionChanged() - Method in class net.imagej.plugins.commands.restructure.DeleteAxis

PositionHarmonizer - Class in net.imagej.legacy.translate

This class is responsible for harmonizing slider position values (and active plane position) between legacy ImageJ and modern ImageJ.

PositionHarmonizer() - Constructor for class net.imagej.legacy.translate.PositionHarmonizer

pow(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator

pow(BigComplex) - Method in class net.imagej.types.BigComplex

pow(double) - Method in class net.imagej.types.BigComplex

pow(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType

pow(double) - Method in class net.imagej.types.PreciseFixedComplexFloatType

pow(int) - Method in class net.imagej.types.PreciseFixedFloatType

pow(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType

pow(double) - Method in class net.imagej.types.PreciseFixedFloatType

pow(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType

pow(double) - Method in class net.imagej.types.UnboundedIntegerType

power(double, double) - Method in class net.imagej.ops.math.MathNamespace

power(O, I, double) - Method in class net.imagej.ops.math.MathNamespace

PowerAxis - Class in net.imagej.axis

PowerAxis is a CalibratedAxis that scales raw values by the equation y = a + b*x^c.

PowerAxis(double) - Constructor for class net.imagej.axis.PowerAxis

PowerAxis(AxisType, double) - Constructor for class net.imagej.axis.PowerAxis

PowerAxis(AxisType, String, double, double, double) - Constructor for class net.imagej.axis.PowerAxis

PowerConstant() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.PowerConstant

PowerDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign

Fills an output Dataset by raising input Dataset values to a user defined constant value power.

PowerDataValues() - Constructor for class net.imagej.plugins.commands.assign.PowerDataValues

PreciseFixedComplexFloatType - Class in net.imagej.types

A fixed point complex float type.

PreciseFixedComplexFloatType() - Constructor for class net.imagej.types.PreciseFixedComplexFloatType

PreciseFixedComplexFloatType(double, double) - Constructor for class net.imagej.types.PreciseFixedComplexFloatType

PreciseFixedComplexFloatType(BigDecimal, BigDecimal) - Constructor for class net.imagej.types.PreciseFixedComplexFloatType

PreciseFixedComplexFloatType(String, String) - Constructor for class net.imagej.types.PreciseFixedComplexFloatType

PreciseFixedComplexFloatType(PreciseFixedComplexFloatType) - Constructor for class net.imagej.types.PreciseFixedComplexFloatType

PreciseFixedFloatType - Class in net.imagej.types

A fixed point floating numeric type.

PreciseFixedFloatType() - Constructor for class net.imagej.types.PreciseFixedFloatType

PreciseFixedFloatType(long) - Constructor for class net.imagej.types.PreciseFixedFloatType

PreciseFixedFloatType(double) - Constructor for class net.imagej.types.PreciseFixedFloatType

PreciseFixedFloatType(BigInteger) - Constructor for class net.imagej.types.PreciseFixedFloatType

PreciseFixedFloatType(BigDecimal) - Constructor for class net.imagej.types.PreciseFixedFloatType

PreciseFixedFloatType(String) - Constructor for class net.imagej.types.PreciseFixedFloatType

PreciseFixedFloatType(PreciseFixedFloatType) - Constructor for class net.imagej.types.PreciseFixedFloatType

Preferences - Class in net.imagej.app

Displays the preferences dialog.

Preferences() - Constructor for class net.imagej.app.Preferences

prefix(FileObject) - Method in class net.imagej.updater.FilesCollection

prefix(String) - Method in class net.imagej.updater.FilesCollection

prefixUpdate(String) - Method in class net.imagej.updater.FilesCollection

prefs() - Method in class net.imagej.app.ImageJApp

prefs() - Method in class net.imagej.legacy.LegacyImageJApp

PREFS_USER - Static variable in class net.imagej.updater.util.UpdaterUtil

preinit() - Static method in class imagej.patcher.LegacyInjector

Deprecated.

preinit(ClassLoader) - Static method in class imagej.patcher.LegacyInjector

Deprecated.

preinit() - Static method in class net.imagej.legacy.LegacyService

Deprecated.
use LegacyInjector.preinit() instead

preinit() - Static method in class net.imagej.patcher.LegacyInjector

preinit(ClassLoader) - Static method in class net.imagej.patcher.LegacyInjector

premain(String, Instrumentation) - Static method in class net.imagej.patcher.JavaAgent

The premain method started at JVM startup.

prepend(String[], String...) - Static method in class net.imagej.launcher.ClassLauncher

prettyPrintTimestamp(long) - Static method in class net.imagej.updater.util.UpdaterUtil

preview - Variable in class net.imagej.plugins.commands.assign.MathCommand

preview() - Method in class net.imagej.plugins.commands.assign.MathCommand

preview() - Method in class net.imagej.plugins.commands.debug.MandelbrotSetImage

preview() - Method in class net.imagej.plugins.commands.display.ChannelsTool

preview() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties

previewRunning(boolean) - Method in class imagej.patcher.HeadlessGenericDialog

Deprecated.

previewRunning(boolean) - Method in class net.imagej.patcher.HeadlessGenericDialog

previous - Variable in class net.imagej.updater.FileObject

PrimitiveLogic - Class in net.imagej.ops.logic

Generated logical ops with primitive types.

PrimitiveLogic.BooleanAnd - Class in net.imagej.ops.logic

Op that computes the logical AND (&&) of two boolean values.

PrimitiveLogic.BooleanEqual - Class in net.imagej.ops.logic

Op that tests for equality (==) between two boolean values.

PrimitiveLogic.BooleanNot - Class in net.imagej.ops.logic

Op that computes the logical NOT (!) of a boolean value.

PrimitiveLogic.BooleanNotEqual - Class in net.imagej.ops.logic

Op that tests for inequality (!=) between two boolean values.

PrimitiveLogic.BooleanOr - Class in net.imagej.ops.logic

Op that computes the logical OR (||) of two boolean values.

PrimitiveLogic.BooleanXor - Class in net.imagej.ops.logic

Op that computes the logical XOR (^) of two boolean values.

PrimitiveLogic.DoubleEqual - Class in net.imagej.ops.logic

Op that tests for equality (==) between two double values.

PrimitiveLogic.DoubleGreaterThan - Class in net.imagej.ops.logic

Op that performs a greater-than (>) comparison on two double values.

PrimitiveLogic.DoubleGreaterThanOrEqual - Class in net.imagej.ops.logic

Op that performs a greater-than-or-equal (>=) comparison on two double values.

PrimitiveLogic.DoubleLessThan - Class in net.imagej.ops.logic

Op that performs a less-than (<) comparison on two double values.

PrimitiveLogic.DoubleLessThanOrEqual - Class in net.imagej.ops.logic

Op that performs a less-than-or-equal (<=) comparison on two double values.

PrimitiveLogic.DoubleNotEqual - Class in net.imagej.ops.logic

Op that tests for inequality (!=) between two double values.

PrimitiveLogic.FloatEqual - Class in net.imagej.ops.logic

Op that tests for equality (==) between two float values.

PrimitiveLogic.FloatGreaterThan - Class in net.imagej.ops.logic

Op that performs a greater-than (>) comparison on two float values.

PrimitiveLogic.FloatGreaterThanOrEqual - Class in net.imagej.ops.logic

Op that performs a greater-than-or-equal (>=) comparison on two float values.

PrimitiveLogic.FloatLessThan - Class in net.imagej.ops.logic

Op that performs a less-than (<) comparison on two float values.

PrimitiveLogic.FloatLessThanOrEqual - Class in net.imagej.ops.logic

Op that performs a less-than-or-equal (<=) comparison on two float values.

PrimitiveLogic.FloatNotEqual - Class in net.imagej.ops.logic

Op that tests for inequality (!=) between two float values.

PrimitiveLogic.IntegerEqual - Class in net.imagej.ops.logic

Op that tests for equality (==) between two int values.

PrimitiveLogic.IntegerGreaterThan - Class in net.imagej.ops.logic

Op that performs a greater-than (>) comparison on two int values.

PrimitiveLogic.IntegerGreaterThanOrEqual - Class in net.imagej.ops.logic

Op that performs a greater-than-or-equal (>=) comparison on two int values.

PrimitiveLogic.IntegerLessThan - Class in net.imagej.ops.logic

Op that performs a less-than (<) comparison on two int values.

PrimitiveLogic.IntegerLessThanOrEqual - Class in net.imagej.ops.logic

Op that performs a less-than-or-equal (<=) comparison on two int values.

PrimitiveLogic.IntegerNotEqual - Class in net.imagej.ops.logic

Op that tests for inequality (!=) between two int values.

PrimitiveLogic.LongEqual - Class in net.imagej.ops.logic

Op that tests for equality (==) between two long values.

PrimitiveLogic.LongGreaterThan - Class in net.imagej.ops.logic

Op that performs a greater-than (>) comparison on two long values.

PrimitiveLogic.LongGreaterThanOrEqual - Class in net.imagej.ops.logic

Op that performs a greater-than-or-equal (>=) comparison on two long values.

PrimitiveLogic.LongLessThan - Class in net.imagej.ops.logic

Op that performs a less-than (<) comparison on two long values.

PrimitiveLogic.LongLessThanOrEqual - Class in net.imagej.ops.logic

Op that performs a less-than-or-equal (<=) comparison on two long values.

PrimitiveLogic.LongNotEqual - Class in net.imagej.ops.logic

Op that tests for inequality (!=) between two long values.

PrimitiveMath - Class in net.imagej.ops.math

Generated arithmetic ops with primitive types.

PrimitiveMath.DoubleAbs - Class in net.imagej.ops.math

Op that computes the absolute value of a double value.

PrimitiveMath.DoubleAdd - Class in net.imagej.ops.math

Op that adds (+) two double values.

PrimitiveMath.DoubleArccos - Class in net.imagej.ops.math

Op that computes the arccosine of a double value.

PrimitiveMath.DoubleArcsin - Class in net.imagej.ops.math

Op that computes the arcsine of a double value.

PrimitiveMath.DoubleArctan - Class in net.imagej.ops.math

Op that computes the arctangent of a double value.

PrimitiveMath.DoubleCeil - Class in net.imagej.ops.math

Op that computes the ceiling of a double value.

PrimitiveMath.DoubleCos - Class in net.imagej.ops.math

Op that computes the cosine of a double value.

PrimitiveMath.DoubleCosh - Class in net.imagej.ops.math

Op that computes the hyperbolic cosine of a double value.

PrimitiveMath.DoubleCubeRoot - Class in net.imagej.ops.math

Op that computes the cubic root of a double value.

PrimitiveMath.DoubleDivide - Class in net.imagej.ops.math

Op that divides (/) two double values.

PrimitiveMath.DoubleExp - Class in net.imagej.ops.math

Op that computes the natural exponent of a double value.

PrimitiveMath.DoubleFloor - Class in net.imagej.ops.math

Op that computes the floor of a double value.

PrimitiveMath.DoubleLog - Class in net.imagej.ops.math

Op that computes the natural logarithm of a double value.

PrimitiveMath.DoubleLog10 - Class in net.imagej.ops.math

Op that computes the base 10 logarithm of a double value.

PrimitiveMath.DoubleLogOnePlusX - Class in net.imagej.ops.math

Op that computes the natural logarithm of one plus a double value.

PrimitiveMath.DoubleMax - Class in net.imagej.ops.math

Op that computes the maximum of two double values.

PrimitiveMath.DoubleMin - Class in net.imagej.ops.math

Op that computes the minimum of two double values.

PrimitiveMath.DoubleMultiply - Class in net.imagej.ops.math

Op that multiplies (*) two double values.

PrimitiveMath.DoubleNegate - Class in net.imagej.ops.math

Op that negates (-) a double value.

PrimitiveMath.DoublePower - Class in net.imagej.ops.math

Op that exponentiate two double values.

PrimitiveMath.DoubleRemainder - Class in net.imagej.ops.math

Op that computes the remainder (%) of two double values.

PrimitiveMath.DoubleRound - Class in net.imagej.ops.math

Op that rounds a double value.

PrimitiveMath.DoubleSignum - Class in net.imagej.ops.math

Op that computes the signum of a double value.

PrimitiveMath.DoubleSin - Class in net.imagej.ops.math

Op that computes the sine of a double value.

PrimitiveMath.DoubleSinh - Class in net.imagej.ops.math

Op that computes the hyperbolic sine of a double value.

PrimitiveMath.DoubleSqrt - Class in net.imagej.ops.math

Op that computes the square root of a double value.

PrimitiveMath.DoubleSubtract - Class in net.imagej.ops.math

Op that subtracts (-) two double values.

PrimitiveMath.DoubleTan - Class in net.imagej.ops.math

Op that computes the tangent of a double value.

PrimitiveMath.DoubleTanh - Class in net.imagej.ops.math

Op that computes the hyperbolic tangent of a double value.

PrimitiveMath.FloatAbs - Class in net.imagej.ops.math

Op that computes the absolute value of a float value.

PrimitiveMath.FloatAdd - Class in net.imagej.ops.math

Op that adds (+) two float values.

PrimitiveMath.FloatDivide - Class in net.imagej.ops.math

Op that divides (/) two float values.

PrimitiveMath.FloatMax - Class in net.imagej.ops.math

Op that computes the maximum of two float values.

PrimitiveMath.FloatMin - Class in net.imagej.ops.math

Op that computes the minimum of two float values.

PrimitiveMath.FloatMultiply - Class in net.imagej.ops.math

Op that multiplies (*) two float values.

PrimitiveMath.FloatNegate - Class in net.imagej.ops.math

Op that negates (-) a float value.

PrimitiveMath.FloatRemainder - Class in net.imagej.ops.math

Op that computes the remainder (%) of two float values.

PrimitiveMath.FloatRound - Class in net.imagej.ops.math

Op that rounds a float value.

PrimitiveMath.FloatSignum - Class in net.imagej.ops.math

Op that computes the signum of a float value.

PrimitiveMath.FloatSubtract - Class in net.imagej.ops.math

Op that subtracts (-) two float values.

PrimitiveMath.IntegerAbs - Class in net.imagej.ops.math

Op that computes the absolute value of a int value.

PrimitiveMath.IntegerAdd - Class in net.imagej.ops.math

Op that adds (+) two int values.

PrimitiveMath.IntegerAnd - Class in net.imagej.ops.math

Op that computes the bitwise AND (&) of two int values.

PrimitiveMath.IntegerComplement - Class in net.imagej.ops.math

Op that computes the bitwise complement (~) of a int value.

PrimitiveMath.IntegerDivide - Class in net.imagej.ops.math

Op that divides (/) two int values.

PrimitiveMath.IntegerLeftShift - Class in net.imagej.ops.math

Op that computes the signed left shift (<<) of two int values.

PrimitiveMath.IntegerMax - Class in net.imagej.ops.math

Op that computes the maximum of two int values.

PrimitiveMath.IntegerMin - Class in net.imagej.ops.math

Op that computes the minimum of two int values.

PrimitiveMath.IntegerMultiply - Class in net.imagej.ops.math

Op that multiplies (*) two int values.

PrimitiveMath.IntegerNegate - Class in net.imagej.ops.math

Op that negates (-) a int value.

PrimitiveMath.IntegerOr - Class in net.imagej.ops.math

Op that computes the bitwise OR (|) of two int values.

PrimitiveMath.IntegerRemainder - Class in net.imagej.ops.math

Op that computes the remainder (%) of two int values.

PrimitiveMath.IntegerRightShift - Class in net.imagej.ops.math

Op that computes the signed right shift (>>) of two int values.

PrimitiveMath.IntegerSubtract - Class in net.imagej.ops.math

Op that subtracts (-) two int values.

PrimitiveMath.IntegerUnsignedRightShift - Class in net.imagej.ops.math

Op that computes the unsigned right shift (>>>) of two int values.

PrimitiveMath.IntegerXor - Class in net.imagej.ops.math

Op that computes the bitwise XOR (^) of two int values.

PrimitiveMath.LongAbs - Class in net.imagej.ops.math

Op that computes the absolute value of a long value.

PrimitiveMath.LongAdd - Class in net.imagej.ops.math

Op that adds (+) two long values.

PrimitiveMath.LongAnd - Class in net.imagej.ops.math

Op that computes the bitwise AND (&) of two long values.

PrimitiveMath.LongComplement - Class in net.imagej.ops.math

Op that computes the bitwise complement (~) of a long value.

PrimitiveMath.LongDivide - Class in net.imagej.ops.math

Op that divides (/) two long values.

PrimitiveMath.LongLeftShift - Class in net.imagej.ops.math

Op that computes the signed left shift (<<) of two long values.

PrimitiveMath.LongMax - Class in net.imagej.ops.math

Op that computes the maximum of two long values.

PrimitiveMath.LongMin - Class in net.imagej.ops.math

Op that computes the minimum of two long values.

PrimitiveMath.LongMultiply - Class in net.imagej.ops.math

Op that multiplies (*) two long values.

PrimitiveMath.LongNegate - Class in net.imagej.ops.math

Op that negates (-) a long value.

PrimitiveMath.LongOr - Class in net.imagej.ops.math

Op that computes the bitwise OR (|) of two long values.

PrimitiveMath.LongRemainder - Class in net.imagej.ops.math

Op that computes the remainder (%) of two long values.

PrimitiveMath.LongRightShift - Class in net.imagej.ops.math

Op that computes the signed right shift (>>) of two long values.

PrimitiveMath.LongSubtract - Class in net.imagej.ops.math

Op that subtracts (-) two long values.

PrimitiveMath.LongUnsignedRightShift - Class in net.imagej.ops.math

Op that computes the unsigned right shift (>>>) of two long values.

PrimitiveMath.LongXor - Class in net.imagej.ops.math

Op that computes the bitwise XOR (^) of two long values.

print(String, String) - Method in class net.imagej.updater.util.StderrProgress

printJarsForClass(Class2JarFilesMap, String, boolean) - Static method in class net.imagej.updater.util.Class2JarFilesMap

println(String) - Method in class net.imagej.ui.swing.updater.DiffView

Colorize one line of output.

PRIORITY - Static variable in class net.imagej.app.ImageJApp

PRIORITY - Static variable in class net.imagej.plugins.tools.ArrowTool

PRIORITY - Static variable in class net.imagej.plugins.tools.BgColorTool

PRIORITY - Static variable in class net.imagej.plugins.tools.FgColorTool

PRIORITY - Static variable in class net.imagej.plugins.tools.FloodFillTool

PRIORITY - Static variable in class net.imagej.plugins.tools.PaintBrushTool

PRIORITY - Static variable in class net.imagej.plugins.tools.PanTool

PRIORITY - Static variable in class net.imagej.plugins.tools.PencilTool

PRIORITY - Static variable in class net.imagej.plugins.tools.SprayCanTool

PRIORITY - Static variable in class net.imagej.plugins.tools.WandTool

PRIORITY - Static variable in class net.imagej.plugins.tools.ZoomTool

PRIORITY - Static variable in class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter

PRIORITY - Static variable in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter

PRIORITY - Static variable in class net.imagej.ui.swing.tools.SwingAngleTool

PRIORITY - Static variable in class net.imagej.ui.swing.tools.SwingEllipseTool

PRIORITY - Static variable in class net.imagej.ui.swing.tools.SwingLineTool

PRIORITY - Static variable in class net.imagej.ui.swing.tools.SwingPointTool

PRIORITY - Static variable in class net.imagej.ui.swing.tools.SwingPolygonTool

PRIORITY - Static variable in class net.imagej.ui.swing.tools.SwingPolylineTool

PRIORITY - Static variable in class net.imagej.ui.swing.tools.SwingRectangleTool

PRIORITY - Static variable in class net.imagej.ui.swing.tools.SwingTextTool

process(Module) - Method in class net.imagej.display.process.SingleInputPreprocessor

process(Module) - Method in class net.imagej.legacy.plugin.ActiveImagePlusPreprocessor

process(Module) - Method in class net.imagej.legacy.plugin.MacroPreprocessor

process(Module) - Method in class net.imagej.legacy.plugin.MacroRecorderPostprocessor

process(Module) - Method in class net.imagej.legacy.plugin.MacroRecorderPreprocessor

process(Module) - Method in class net.imagej.legacy.plugin.OverlayPreprocessor

process(Module) - Method in class net.imagej.legacy.plugin.ResultsTablePreprocessor

process(Module) - Method in class net.imagej.legacy.plugin.RoiManagerPreprocessor

process() - Method in class net.imagej.minmax.DefaultMinMaxMethod

process() - Method in interface net.imagej.minmax.MinMaxMethod

Begins searching the target interval for minimum and maximum values.

process(Module) - Method in class net.imagej.omero.legacy.ActiveROIPostprocessor

process(Module) - Method in class net.imagej.omero.legacy.AttachROIPostprocessor

process(Module) - Method in class net.imagej.omero.legacy.CacheROIPostprocessor

process(Module) - Method in class net.imagej.ops.NamespacePreprocessor

process(Module) - Method in class net.imagej.ops.OpEnvironmentPreprocessor

process() - Method in interface net.imagej.plugins.commands.imglib.OutputAlgorithm

process() - Method in class net.imagej.plugins.commands.rotate.XYFlipper

Fills the output image from the input image doing coordinate transformations as needed

process(Module) - Method in class net.imagej.server.resources.ModulesResource.InitializablePreprocessor

progress - Variable in class net.imagej.updater.CommandLine

progress - Variable in class net.imagej.updater.util.AbstractProgressable

Progress - Interface in net.imagej.updater.util

A progress dialog abstraction.

Progressable - Interface in net.imagej.updater.util

Base interface for serving Progress instances.

ProgressDialog - Class in net.imagej.ui.swing.updater

TODO

ProgressDialog(Frame) - Constructor for class net.imagej.ui.swing.updater.ProgressDialog

ProgressDialog(Frame, String) - Constructor for class net.imagej.ui.swing.updater.ProgressDialog

project(OMERORealMask<?>, TypedSpace<? extends TypedAxis>) - Method in class net.imagej.omero.roi.project.DefaultOMEROROIProjector

project(I, TypedSpace<? extends TypedAxis>) - Method in interface net.imagej.omero.roi.project.OMEROROIProjector

project(IterableInterval<V>, RandomAccessibleInterval<T>, UnaryComputerOp<Iterable<T>, V>, int) - Method in class net.imagej.ops.transform.TransformNamespace

Executes the "project" operation on the given arguments.

ProjectCommand<T extends RealType<T>> - Class in net.imagej.ops.commands.project

ProjectCommand() - Constructor for class net.imagej.ops.commands.project.ProjectCommand

ProjectedOMERORealMask<S extends ShapeData> - Class in net.imagej.omero.roi.project

An OMERORealMask which has been adapted to a given space.

ProjectedOMERORealMask(OMERORealMask<S>, AnnotatedSpace<? extends TypedAxis>) - Constructor for class net.imagej.omero.roi.project.ProjectedOMERORealMask

ProjectedOMERORealMaskToShapeData - Class in net.imagej.omero.roi.project

Converts an ProjectedOMERORealMask to ShapeData.

ProjectedOMERORealMaskToShapeData() - Constructor for class net.imagej.omero.roi.project.ProjectedOMERORealMaskToShapeData

projectIntoSpace(TypedSpace<? extends TypedAxis>) - Method in class net.imagej.omero.roi.DefaultOMEROROIElement

projectIntoSpace(TypedSpace<? extends TypedAxis>) - Method in interface net.imagej.omero.roi.OMEROROIElement

ProjectMethod<T extends RealType<T>> - Interface in net.imagej.ops.commands.project

Interface marking functions that can be used within the ProjectCommand.

ProjectRAIToII<T,V> - Class in net.imagej.ops.transform.project

ProjectRAIToII() - Constructor for class net.imagej.ops.transform.project.ProjectRAIToII

ProjectRAIToIterableInterval<T,V> - Class in net.imagej.ops.transform.project

ProjectRAIToIterableInterval() - Constructor for class net.imagej.ops.transform.project.ProjectRAIToIterableInterval

prompt() - Method in class net.imagej.legacy.ui.LegacyDialogPrompt

PromptUserToUpdate - Class in net.imagej.updater

This plugin prompts the user to launch the updater due to available updates.

PromptUserToUpdate() - Constructor for class net.imagej.updater.PromptUserToUpdate

promptYesNo(String, String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface

promptYesNo(String, String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface

promptYesNo(String, String) - Method in class net.imagej.updater.util.UpdaterUserInterface

promptYesNo(String, String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface

properties() - Method in class net.imagej.ops.search.OpSearchResult

protocolsMissingUploaders(UploaderService, Progress) - Method in class net.imagej.updater.FilesCollection

prototype(Class<?>) - Method in class net.imagej.omero.DefaultOMEROService

prototype(Class<?>) - Method in interface net.imagej.omero.OMEROService

Creates an OMERO parameter prototype for the given Java class.

publish(SciJavaEvent) - Method in class net.imagej.AbstractData

publish(SciJavaEvent) - Method in class net.imagej.display.AbstractDataView

put(String, Object) - Method in class net.imagej.legacy.plugin.IJ1MacroEngine

put(String, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService

put(String, boolean) - Method in class net.imagej.matlab.ImageJMATLABPrefService

put(String, double) - Method in class net.imagej.matlab.ImageJMATLABPrefService

put(String, float) - Method in class net.imagej.matlab.ImageJMATLABPrefService

put(String, int) - Method in class net.imagej.matlab.ImageJMATLABPrefService

put(String, long) - Method in class net.imagej.matlab.ImageJMATLABPrefService

put(Class<?>, String, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService

put(Class<?>, String, boolean) - Method in class net.imagej.matlab.ImageJMATLABPrefService

put(Class<?>, String, double) - Method in class net.imagej.matlab.ImageJMATLABPrefService

put(Class<?>, String, float) - Method in class net.imagej.matlab.ImageJMATLABPrefService

put(Class<?>, String, int) - Method in class net.imagej.matlab.ImageJMATLABPrefService

put(Class<?>, String, long) - Method in class net.imagej.matlab.ImageJMATLABPrefService

put(String, FileObject) - Method in class net.imagej.updater.FilesCollection

putList(List<String>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService

putList(Class<?>, List<String>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService

putList(Class<?>, List<String>) - Method in class net.imagej.matlab.ImageJMATLABPrefService

putMap(Map<String, String>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService

putMap(Class<?>, Map<String, String>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService

putMap(Class<?>, Map<String, String>) - Method in class net.imagej.matlab.ImageJMATLABPrefService

pValue(PValueResult, RandomAccessibleInterval<T>, RandomAccessibleInterval, BinaryFunctionOp<Iterable<T>, Iterable, Double>) - Method in class net.imagej.ops.coloc.ColocNamespace

pValue(PValueResult, RandomAccessibleInterval<T>, RandomAccessibleInterval, BinaryFunctionOp<Iterable<T>, Iterable, Double>, int) - Method in class net.imagej.ops.coloc.ColocNamespace

pValue(PValueResult, RandomAccessibleInterval<T>, RandomAccessibleInterval, BinaryFunctionOp<Iterable<T>, Iterable, Double>, int, Dimensions) - Method in class net.imagej.ops.coloc.ColocNamespace

pValue(PValueResult, RandomAccessibleInterval<T>, RandomAccessibleInterval, BinaryFunctionOp<Iterable<T>, Iterable, Double>, int, Dimensions, long) - Method in class net.imagej.ops.coloc.ColocNamespace

PValueResult - Class in net.imagej.ops.coloc.pValue

PValueResult() - Constructor for class net.imagej.ops.coloc.pValue.PValueResult

pValues - Variable in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata

Q

Quadric - Class in net.imagej.ops.stats.regression.leastSquares

An op that fits a quadratic surface (quadric) into a set of points.

Quadric() - Constructor for class net.imagej.ops.stats.regression.leastSquares.Quadric

quantile(Iterable<T>, double) - Method in class net.imagej.ops.stats.StatsNamespace

quantile(O, Iterable<T>, double) - Method in class net.imagej.ops.stats.StatsNamespace

query(String...) - Method in class net.imagej.util.MediaWikiClient

queue(String) - Method in class net.imagej.updater.Checksummer

queue(String, File) - Method in class net.imagej.updater.Checksummer

queueDir(String[], String[]) - Method in class net.imagej.updater.Checksummer

queueDir(String, Set<String>) - Method in class net.imagej.updater.Checksummer

queueIfExists(String) - Method in class net.imagej.updater.Checksummer

quit() - Method in class imagej.patcher.LegacyHooks

Deprecated.

Disposes and prepares for quitting.

quit() - Method in class net.imagej.app.ImageJApp

quit() - Method in class net.imagej.legacy.LegacyImageJApp

quit() - Method in class net.imagej.patcher.LegacyHooks

Allows interception of ImageJ 1.x's ImageJ.quit() method.

QuitProgram - Class in net.imagej.app

Quits ImageJ.

QuitProgram() - Constructor for class net.imagej.app.QuitProgram

quitting() - Method in class net.imagej.legacy.IJ1Helper

R

RadialNeigh - Class in net.imagej.plugins.commands.assign.noisereduce

A circular neighborhood of specifiable radius.

RadialNeigh(int, long) - Constructor for class net.imagej.plugins.commands.assign.noisereduce.RadialNeigh

RadialNeighborhoodSpecifier - Class in net.imagej.plugins.commands.assign.noisereduce

Plugin for specifying a circular neighborhood.

RadialNeighborhoodSpecifier() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.RadialNeighborhoodSpecifier

radioButtonIndex - Variable in class imagej.patcher.HeadlessGenericDialog

Deprecated.

radioButtonIndex - Variable in class net.imagej.patcher.HeadlessGenericDialog

radioButtons - Variable in class imagej.patcher.HeadlessGenericDialog

Deprecated.

radioButtons - Variable in class net.imagej.patcher.HeadlessGenericDialog

rai(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.copy.CopyNamespace

rai(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.copy.CopyNamespace

rai - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser

RAIAndII() - Constructor for class net.imagej.ops.map.MapBinaryInplace1s.RAIAndII

RAIAndIIParallel() - Constructor for class net.imagej.ops.map.MapBinaryInplace1s.RAIAndIIParallel

RAIAndIIToII() - Constructor for class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToII

RAIAndIIToIIParallel() - Constructor for class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToIIParallel

RAIAndIIToRAI() - Constructor for class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToRAI

RAIAndIIToRAIParallel() - Constructor for class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToRAIParallel

RAIAndRAIToII() - Constructor for class net.imagej.ops.map.MapBinaryComputers.RAIAndRAIToII

RAIAndRAIToIIParallel() - Constructor for class net.imagej.ops.map.MapBinaryComputers.RAIAndRAIToIIParallel

RAIs - Class in net.imagej.ops.special.chain

Utility class for working with RandomAccessibleIntervals.

RAIToHTMLConverter - Class in net.imagej.notebook.image

Converter from RandomAccessibleInterval to HTMLObject.

RAIToHTMLConverter() - Constructor for class net.imagej.notebook.image.RAIToHTMLConverter

RAIToII() - Constructor for class net.imagej.ops.map.MapUnaryComputers.RAIToII

RAIToIIParallel() - Constructor for class net.imagej.ops.map.MapUnaryComputers.RAIToIIParallel

RAIToMaskData - Class in net.imagej.omero.roi.mask

Converts a RandomAccessibleInterval to an OMERO MaskData.

RAIToMaskData() - Constructor for class net.imagej.omero.roi.mask.RAIToMaskData

RAIToMaskIntervalConverter - Class in net.imagej.roi

Converts a RandomAccessibleInterval<BoolType> to MaskInterval.

RAIToMaskIntervalConverter() - Constructor for class net.imagej.roi.RAIToMaskIntervalConverter

RAIToMeshConverter - Class in net.imagej.ops.geom.geom3d.mesh

Converts a RandomAccessibleInterval to a Mesh

RAIToMeshConverter() - Constructor for class net.imagej.ops.geom.geom3d.mesh.RAIToMeshConverter

RAMP - Static variable in class net.imagej.plugins.commands.io.NewImage

randomAccess() - Method in class net.imagej.DefaultDataset

randomAccess(Interval) - Method in class net.imagej.DefaultDataset

randomAccess() - Method in class net.imagej.ImgPlus

randomAccess(Interval) - Method in class net.imagej.ImgPlus

randomAccess() - Method in class net.imagej.ops.coloc.ShuffledView

randomAccess(Interval) - Method in class net.imagej.ops.coloc.ShuffledView

randomAccess(RandomAccessible<T>) - Method in class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning

randomAccess() - Method in class net.imagej.table.ResultsImg

randomAccess(Interval) - Method in class net.imagej.table.ResultsImg

RandomAccessibleAsMaskUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper

RandomAccessibleIntervalAsMaskIntervalUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper

randomAccessibleIntervalType() - Static method in class net.imagej.roi.MaskConversionUtil

Gets parameterized Type for RandomAccessibleInterval<BoolType>.

randomAccessibleType() - Static method in class net.imagej.roi.MaskConversionUtil

Gets parameterized Type for RandomAccessible<BoolType>.

randomGaussian(O, I) - Method in class net.imagej.ops.math.MathNamespace

randomGaussian(O, I, long) - Method in class net.imagej.ops.math.MathNamespace

RandomGaussian() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.RandomGaussian

randomString(int) - Static method in class net.imagej.server.Utils

Generates a lowercase alphanumeric random String.

randomString(int, String) - Static method in class net.imagej.server.Utils

Generate a random string of length len from the given alphabet.

randomUniform(O, I) - Method in class net.imagej.ops.math.MathNamespace

randomUniform(O, I, long) - Method in class net.imagej.ops.math.MathNamespace

RandomUniform() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.RandomUniform

rangeChanged() - Method in class net.imagej.plugins.commands.display.interactive.Threshold

rasterView(RealRandomAccessible<T>) - Method in class net.imagej.ops.transform.TransformNamespace

Turns a RealRandomAccessible into a RandomAccessible, providing RandomAccess at integer coordinates.

RAToMaskConverter - Class in net.imagej.roi

Converts a RandomAccessible<BoolType> to Mask.

RAToMaskConverter() - Constructor for class net.imagej.roi.RAToMaskConverter

rawValue(double) - Method in interface net.imagej.axis.CalibratedAxis

Returns a raw value given a calibrated position along the axis.

rawValue(double) - Method in class net.imagej.axis.ChapmanRichardsAxis

rawValue(double) - Method in class net.imagej.axis.DefaultLinearAxis

rawValue(double) - Method in class net.imagej.axis.EnumeratedAxis

rawValue(double) - Method in class net.imagej.axis.ExponentialAxis

rawValue(double) - Method in class net.imagej.axis.ExponentialRecoveryAxis

rawValue(double) - Method in class net.imagej.axis.GammaVariateAxis

rawValue(double) - Method in class net.imagej.axis.GaussianAxis

rawValue(double) - Method in class net.imagej.axis.IdentityAxis

rawValue(double) - Method in class net.imagej.axis.InverseRodbardAxis

rawValue(double) - Method in class net.imagej.axis.LogLinearAxis

rawValue(double) - Method in class net.imagej.axis.PolynomialAxis

rawValue(double) - Method in class net.imagej.axis.PowerAxis

rawValue(double) - Method in class net.imagej.axis.RodbardAxis

read(File, Mesh) - Method in class net.imagej.mesh.io.ply.PLYMeshIO

read(Mesh, byte[]) - Method in class net.imagej.mesh.io.stl.STLMeshIO

read(Mesh, File) - Method in class net.imagej.mesh.io.stl.STLMeshIO

read() - Method in class net.imagej.updater.FilesCollection

read(File) - Method in class net.imagej.updater.FilesCollection

read(FileInputStream) - Method in class net.imagej.updater.FilesCollection

read(InputStream) - Method in class net.imagej.updater.POMParser

read(URL) - Method in class net.imagej.updater.util.DropboxURLMapper

read() - Method in class net.imagej.updater.util.SkipHashedLines

read(byte[]) - Method in class net.imagej.updater.util.SkipHashedLines

read(byte[], int, int) - Method in class net.imagej.updater.util.SkipHashedLines

read(String) - Method in class net.imagej.updater.XMLFileReader

read(InputStream) - Method in class net.imagej.updater.XMLFileReader

read(String, InputStream, long) - Method in class net.imagej.updater.XMLFileReader

readCachedChecksums() - Method in class net.imagej.updater.Checksummer

Reader() - Constructor for class net.imagej.omero.OMEROFormat.Reader

readExternal(ObjectInput) - Method in class net.imagej.AbstractData

readExternal(ObjectInput) - Method in class net.imagej.overlay.AbstractOverlay

readExternal(ObjectInput) - Method in class net.imagej.overlay.AngleOverlay

readExternal(ObjectInput) - Method in class net.imagej.overlay.BinaryMaskOverlay

readExternal(ObjectInput) - Method in class net.imagej.overlay.CompositeOverlay

readExternal(ObjectInput) - Method in class net.imagej.overlay.EllipseOverlay

readExternal(ObjectInput) - Method in class net.imagej.overlay.GeneralPathOverlay

readExternal(ObjectInput) - Method in class net.imagej.overlay.LineOverlay

readExternal(ObjectInput) - Method in class net.imagej.overlay.PointOverlay

readExternal(ObjectInput) - Method in class net.imagej.overlay.PolygonOverlay

readExternal(ObjectInput) - Method in class net.imagej.overlay.RectangleOverlay

readFile(File) - Static method in class net.imagej.updater.util.UpdaterUtil

readNativeVersionFile(String) - Static method in class net.imagej.tensorflow.util.TensorFlowUtil

Reading the content of the TensorFlowUtil.TFVERSIONFILE indicating which native version of TensorFlow is installed

readNumber(InputStream) - Method in class net.imagej.plugins.uploaders.ssh.SSHFileUploader

readStreamAsBytes(InputStream) - Static method in class net.imagej.updater.util.UpdaterUtil

real(ImgPlus<?>) - Method in class net.imagej.DefaultImgPlusService

real(ImgPlus<?>) - Method in interface net.imagej.ImgPlusService

Given an ImgPlus of unknown type this returns a typed ImgPlus of type RealType.

real - Variable in class net.imagej.ops.features.zernike.helper.ZernikeMoment

RealMaskAsRealRandomAccessibleUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RealMaskAsRealRandomAccessibleUnwrapper

RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper

RealMaskRealIntervalToImageRoiConverter - Class in net.imagej.legacy.convert.roi

Converts a RealMaskRealInterval to an ImageRoi.

RealMaskRealIntervalToImageRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter

RealMaskRealIntervalToMaskData - Class in net.imagej.omero.roi.mask

Converts a RealMaskRealInterval to an OMERO MaskData.

RealMaskRealIntervalToMaskData() - Constructor for class net.imagej.omero.roi.mask.RealMaskRealIntervalToMaskData

RealMaskRealIntervalToRRARIConverter - Class in net.imagej.roi

Converts a RealMaskRealInterval to RealRandomAccessibleRealInterval<BoolType>.

RealMaskRealIntervalToRRARIConverter() - Constructor for class net.imagej.roi.RealMaskRealIntervalToRRARIConverter

RealMaskToRRAConverter - Class in net.imagej.roi

Converts a RealMask to RealRandomAccessible<BoolType>.

RealMaskToRRAConverter() - Constructor for class net.imagej.roi.RealMaskToRRAConverter

realMax(int) - Method in class net.imagej.DefaultDataset

realMax(double[]) - Method in class net.imagej.DefaultDataset

realMax(RealPositionable) - Method in class net.imagej.DefaultDataset

realMax(int) - Method in class net.imagej.display.DefaultImageDisplay

realMax(double[]) - Method in class net.imagej.display.DefaultImageDisplay

realMax(RealPositionable) - Method in class net.imagej.display.DefaultImageDisplay

realMax(int) - Method in class net.imagej.ImgPlus

realMax(double[]) - Method in class net.imagej.ImgPlus

realMax(RealPositionable) - Method in class net.imagej.ImgPlus

realMax(int) - Method in class net.imagej.interval.AbstractCalibratedRealInterval

realMax(double[]) - Method in class net.imagej.interval.AbstractCalibratedRealInterval

realMax(RealPositionable) - Method in class net.imagej.interval.AbstractCalibratedRealInterval

realMax(int) - Method in class net.imagej.interval.CombinedRealInterval

realMax(double[]) - Method in class net.imagej.interval.CombinedRealInterval

realMax(RealPositionable) - Method in class net.imagej.interval.CombinedRealInterval

realMax(int) - Method in class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper

realMax(int) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper

realMax(int) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

realMax(double[]) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

realMax(RealPositionable) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

realMax(int) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

realMax(int) - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper

realMax(int) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper

realMax(int) - Method in class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper

realMax(int) - Method in class net.imagej.legacy.convert.roi.ShapeRoiWrapper

realMax(int) - Method in class net.imagej.omero.legacy.text.OMEROText

realMax(int) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper

realMax(int) - Method in interface net.imagej.omero.roi.ellipse.OMEROEllipse

realMax(int) - Method in class net.imagej.omero.roi.line.DefaultOMEROLine

realMax(int) - Method in class net.imagej.omero.roi.mask.DefaultOMEROMask

realMax(int) - Method in interface net.imagej.omero.roi.point.OMEROPoint

realMax(int) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape

realMax(int) - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMaskRealInterval

realMax(int) - Method in interface net.imagej.omero.roi.rectangle.OMERORectangle

realMax(int) - Method in class net.imagej.overlay.AbstractOverlay

realMax(double[]) - Method in class net.imagej.overlay.AbstractOverlay

realMax(RealPositionable) - Method in class net.imagej.overlay.AbstractOverlay

realMax(int) - Method in class net.imagej.table.ResultsImg

realMax(double[]) - Method in class net.imagej.table.ResultsImg

realMax(RealPositionable) - Method in class net.imagej.table.ResultsImg

realMin(int) - Method in class net.imagej.DefaultDataset

realMin(double[]) - Method in class net.imagej.DefaultDataset

realMin(RealPositionable) - Method in class net.imagej.DefaultDataset

realMin(int) - Method in class net.imagej.display.DefaultImageDisplay

realMin(double[]) - Method in class net.imagej.display.DefaultImageDisplay

realMin(RealPositionable) - Method in class net.imagej.display.DefaultImageDisplay

realMin(int) - Method in class net.imagej.ImgPlus

realMin(double[]) - Method in class net.imagej.ImgPlus

realMin(RealPositionable) - Method in class net.imagej.ImgPlus

realMin(int) - Method in class net.imagej.interval.AbstractCalibratedRealInterval

realMin(double[]) - Method in class net.imagej.interval.AbstractCalibratedRealInterval

realMin(RealPositionable) - Method in class net.imagej.interval.AbstractCalibratedRealInterval

realMin(int) - Method in class net.imagej.interval.CombinedRealInterval

realMin(double[]) - Method in class net.imagej.interval.CombinedRealInterval

realMin(RealPositionable) - Method in class net.imagej.interval.CombinedRealInterval

realMin(int) - Method in class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper

realMin(int) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper

realMin(int) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

realMin(double[]) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

realMin(RealPositionable) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

realMin(int) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

realMin(int) - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper

realMin(int) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper

realMin(int) - Method in class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper

realMin(int) - Method in class net.imagej.legacy.convert.roi.ShapeRoiWrapper

realMin(int) - Method in class net.imagej.omero.legacy.text.OMEROText

realMin(int) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper

realMin(int) - Method in interface net.imagej.omero.roi.ellipse.OMEROEllipse

realMin(int) - Method in class net.imagej.omero.roi.line.DefaultOMEROLine

realMin(int) - Method in class net.imagej.omero.roi.mask.DefaultOMEROMask

realMin(int) - Method in interface net.imagej.omero.roi.point.OMEROPoint

realMin(int) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape

realMin(int) - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMaskRealInterval

realMin(int) - Method in interface net.imagej.omero.roi.rectangle.OMERORectangle

realMin(int) - Method in class net.imagej.overlay.AbstractOverlay

realMin(double[]) - Method in class net.imagej.overlay.AbstractOverlay

realMin(RealPositionable) - Method in class net.imagej.overlay.AbstractOverlay

realMin(int) - Method in class net.imagej.table.ResultsImg

realMin(double[]) - Method in class net.imagej.table.ResultsImg

realMin(RealPositionable) - Method in class net.imagej.table.ResultsImg

realPointCollection(HashMap<TDoubleArrayList, L>) - Method in interface net.imagej.roi.ROIService

Creates a mutable WritableRealPointCollection containing the given points.

realPointCollection(Collection<L>) - Method in interface net.imagej.roi.ROIService

Creates a WritableRealPointCollection containing the given points.

RealPointCollectionToPointRoiConverter - Class in net.imagej.legacy.convert.roi.point

Converts a RealPointCollection to a PointRoi.

RealPointCollectionToPointRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.point.RealPointCollectionToPointRoiConverter

RealPointCollectionWrapper - Class in net.imagej.legacy.convert.roi.point

A PointRoi with an associated WritableRealPointCollection.

RealPointCollectionWrapper(WritableRealPointCollection<RealLocalizableRealPositionable>) - Constructor for class net.imagej.legacy.convert.roi.point.RealPointCollectionWrapper

realPointSampleListRealPointCollection(RealPointSampleList<L>) - Method in interface net.imagej.roi.ROIService

Creates a WritableRealPointCollection containing the given points.

realPointSampleListRealPointCollection(Collection<L>) - Method in interface net.imagej.roi.ROIService

Creates a WritableRealPointCollection containing the given points.

RealRandomAccessibleAsRealMaskUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper

RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper

realRandomAccessibleRealIntervalType() - Static method in class net.imagej.roi.MaskConversionUtil

Gets parameterized Type for RealRandomAccessibleRealInterval<BoolType>.

realRandomAccessibleType() - Static method in class net.imagej.roi.MaskConversionUtil

Gets parameterized Type for RealRandomAccessible<BoolType>.

realReport - Static variable in class net.imagej.patcher.PerformanceProfiler

RealTransformUnaryCompositeRealMaskRealIntervalToShapeData - Class in net.imagej.omero.roi.transform

Converts 2D affine transformed RealTransformUnaryCompositeRealMaskRealIntervals to ShapeData.

RealTransformUnaryCompositeRealMaskRealIntervalToShapeData() - Constructor for class net.imagej.omero.roi.transform.RealTransformUnaryCompositeRealMaskRealIntervalToShapeData

RealTypeConverter,O extends RealType<O>> - Class in net.imagej.ops.convert

Base class for ops which convert between RealTypes.

RealTypeConverter() - Constructor for class net.imagej.ops.convert.RealTypeConverter

RealTypeMixIn() - Constructor for class net.imagej.server.mixins.Mixins.RealTypeMixIn

rebuild() - Method in interface net.imagej.Data

Informs interested parties that the data object has undergone a major change, such as the dimensional extents changing.

rebuild() - Method in interface net.imagej.Dataset

Informs interested parties that the data object has undergone a major change, such as the dimensional extents changing.

rebuild() - Method in class net.imagej.DefaultDataset

rebuild() - Method in interface net.imagej.display.DataView

Recreates the view.

rebuild() - Method in class net.imagej.display.DefaultDatasetView

rebuild() - Method in class net.imagej.display.DefaultImageDisplay

rebuild() - Method in class net.imagej.display.DefaultOverlayView

rebuild() - Method in class net.imagej.overlay.AbstractOverlay

rebuild() - Method in interface net.imagej.overlay.Overlay

Informs interested parties that the data object has undergone a major change, such as the dimensional extents changing.

rebuildButton - Variable in class net.imagej.ui.swing.updater.UpdaterFrame

reciprocal(O, I, double) - Method in class net.imagej.ops.math.MathNamespace

Reciprocal() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Reciprocal

ReciprocalDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign

Fills an output Dataset by taking reciprocal values of an input Dataset.

ReciprocalDataValues() - Constructor for class net.imagej.plugins.commands.assign.ReciprocalDataValues

record(MsEvent) - Method in class net.imagej.plugins.tools.PixelRecorder

This method takes a mouse event and records information internally about the location, color, and type of data referenced at the mouse position.

recordOption(String, String) - Method in class net.imagej.legacy.IJ1Helper

Records an option in ImageJ 1.x's macro recorder, safely.

RectangleJHotDrawAdapter - Class in net.imagej.ui.swing.overlay

JHotDraw adapter for rectangle overlays.

RectangleJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter

RectangleOverlay - Class in net.imagej.overlay

An axis-aligned rectangle, backed by a RectangleRegionOfInterest.

RectangleOverlay() - Constructor for class net.imagej.overlay.RectangleOverlay

RectangleOverlay(Context) - Constructor for class net.imagej.overlay.RectangleOverlay

RectangularNeigh - Class in net.imagej.plugins.commands.assign.noisereduce

A rectangular neighborhood of specifiable size.

RectangularNeigh(long[], long[]) - Constructor for class net.imagej.plugins.commands.assign.noisereduce.RectangularNeigh

RectangularNeighborhoodSpecifier - Class in net.imagej.plugins.commands.assign.noisereduce

Plugin for specifying a rectangular neighborhood.

RectangularNeighborhoodSpecifier() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier

RED - Static variable in class net.imagej.display.ColorTables

red - Variable in class net.imagej.ui.swing.updater.ConflictDialog

red - Variable in class net.imagej.ui.swing.updater.DiffView

red(String) - Method in class net.imagej.ui.swing.updater.DiffView

Add some red text.

red(int, String) - Method in class net.imagej.ui.swing.updater.DiffView

Insert some red text.

REDGREEN - Static variable in class net.imagej.display.ColorTables

redirected - Static variable in class net.imagej.updater.util.StderrProgress

redoLayout() - Method in class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel

redraw() - Method in class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel

reduceNoise(String) - Method in class net.imagej.plugins.commands.assign.noisereduce.Reducer

Reducer,V extends RealType<V>> - Class in net.imagej.plugins.commands.assign.noisereduce

Reduces noise in an ImgPlus using a given reduction func across a given neighborhood.

Reducer(Context, ImgPlus, Function<PointSet, V>, PointSet) - Constructor for class net.imagej.plugins.commands.assign.noisereduce.Reducer

refreshUpdateSites(List<String>) - Method in class net.imagej.updater.CommandLine

regionSize() - Method in class net.imagej.plugins.commands.debug.MeasurementDemo

register() - Method in class net.imagej.AbstractData

Informs interested parties that the data object has become relevant and should be registered.

register() - Method in class net.imagej.DefaultDataset

register() - Method in class net.imagej.overlay.AbstractOverlay

register(Object, String) - Method in class net.imagej.server.services.DefaultObjectService

register(Object, String) - Method in interface net.imagej.server.services.ObjectService

Registers an Object if it does not exist yet.

registerDataset(Dataset) - Method in class net.imagej.legacy.LegacyImageMap

This method takes a provided Dataset, converts it to an ImagePlus, stores the new ImagePlus in the Dataset 's properties uner LegacyImageMap.IMP_KEY and finally creates an ImageDisplay using the provided Dataset.

registerDisplay(ImageDisplay) - Method in class net.imagej.legacy.LegacyImageMap

Ensures that the given ImageDisplay has a corresponding legacy image.

registerDisplay(ImageDisplay, boolean) - Method in class net.imagej.legacy.LegacyImageMap

As LegacyImageMap.registerDisplay(ImageDisplay) but mappings will go in legacy maps if createLegacyMappings is true.

registerImage(Object) - Method in class imagej.patcher.LegacyHooks

Deprecated.

Registers an image (possibly not seen before).

registerImage(Object) - Method in class net.imagej.legacy.DefaultLegacyHooks

registerImage(Object) - Method in class net.imagej.patcher.LegacyHooks

Registers an image (possibly not seen before).

registerLegacyImage(ImagePlus) - Method in class net.imagej.legacy.LegacyImageMap

Ensures that the given legacy image has a corresponding ImageDisplay.

registerMixIns(ObjectMapper) - Static method in class net.imagej.server.mixins.Mixins

registerType(ImagePlus) - Method in class net.imagej.legacy.translate.Harmonizer

Remembers the type of an ImagePlus.

releaseDataset() - Method in class net.imagej.plugins.tools.PixelRecorder

reloadCollectionAndChecksum(Progress) - Method in class net.imagej.updater.FilesCollection

remainder(double, double) - Method in class net.imagej.ops.math.MathNamespace

remainder(float, float) - Method in class net.imagej.ops.math.MathNamespace

remainder(int, int) - Method in class net.imagej.ops.math.MathNamespace

remainder(long, long) - Method in class net.imagej.ops.math.MathNamespace

remapColorTables(ImgPlus<?>, ImgPlus<?>) - Method in class net.imagej.plugins.commands.restructure.ColorTableRemapper

remapPlanePosition(long[], long[], long[]) - Method in interface net.imagej.plugins.commands.restructure.ColorTableRemapper.RemapAlgorithm

remote - Variable in class net.imagej.ui.swing.updater.DiffFile

RemoteUpdater - Class in net.imagej.launcher

Runs the ImageJ updater via Javascript from the update site.

RemoteUpdater() - Constructor for class net.imagej.launcher.RemoteUpdater

remove(String) - Method in class net.imagej.display.DefaultWindowService

remove(String) - Method in interface net.imagej.display.WindowService

Removes a path from the list of window files.

remove(Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

remove(int) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

remove(Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

remove(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

remove(Object) - Method in class net.imagej.legacy.convert.TableListWrapper

remove(int) - Method in class net.imagej.legacy.convert.TableListWrapper

remove(Class<?>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService

remove(Object) - Method in class net.imagej.omero.LazyTableList

remove(int) - Method in class net.imagej.omero.LazyTableList

remove(int) - Method in class net.imagej.omero.legacy.LazyOverlay

remove(Roi) - Method in class net.imagej.omero.legacy.LazyOverlay

remove(String) - Method in class net.imagej.omero.legacy.LazyOverlay

remove() - Method in class net.imagej.ops.image.integral.IntegralCursor

remove(Overlay) - Method in class net.imagej.overlay.CompositeOverlay

remove(String) - Method in class net.imagej.server.services.DefaultObjectService

remove(String) - Method in interface net.imagej.server.services.ObjectService

Removes an Object with the given ID.

remove - Variable in class net.imagej.ui.swing.updater.SitesDialog

Remove - Class in net.imagej.updater.action

The remove action.

Remove(String) - Constructor for class net.imagej.updater.action.Remove

remove() - Method in class net.imagej.updater.FilesCollection.FilteredIterator

remove(Object) - Method in class net.imagej.updater.FilesCollection

removeAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

removeAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removeAll(Collection<?>) - Method in class net.imagej.legacy.convert.TableListWrapper

removeAll(Collection<?>) - Method in class net.imagej.omero.LazyTableList

removeColumn(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removeColumn(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removeColumns(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removeColumns(String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removeConflict(String) - Method in class net.imagej.updater.Checksummer

removeDependency(String) - Method in class net.imagej.updater.FileObject

removeDuplicateVertices(Mesh, int) - Static method in class net.imagej.mesh.Meshes

Creates a new mesh from a given mesh without any duplicate vertices.

removeFromUpdateSite(String, FilesCollection) - Method in class net.imagej.updater.FileObject

removeNativeLibraries(String, Logger) - Static method in class net.imagej.tensorflow.util.TensorFlowUtil

Deletes all TensorFlow native library files in TensorFlowUtil.getLibDir(String).

removeObject(String) - Method in class net.imagej.server.resources.ObjectsResource

Removes one object from ObjectService.

removeOverlay(ImageDisplay, Overlay) - Method in class net.imagej.display.DefaultOverlayService

removeOverlay(Overlay) - Method in class net.imagej.display.DefaultOverlayService

removeOverlay(ImageDisplay, Overlay) - Method in interface net.imagej.display.OverlayService

Removes an Overlay from the given ImageDisplay.

removeOverlay(Overlay) - Method in interface net.imagej.display.OverlayService

Removes an Overlay from all ImageDisplays.

RemoveOverlay - Class in net.imagej.plugins.commands.display

Removes the currently selected overlay from all displays

RemoveOverlay() - Constructor for class net.imagej.plugins.commands.display.RemoveOverlay

RemoveOverlayReferences - Class in net.imagej.plugins.commands.display

Removes all selected views.

RemoveOverlayReferences() - Constructor for class net.imagej.plugins.commands.display.RemoveOverlayReferences

removePixel(long[], RandomAccessible<BitType>, int) - Method in class net.imagej.ops.morphology.thin.GuoHallThinningStrategy

removePixel(long[], RandomAccessible<BitType>, int) - Method in class net.imagej.ops.morphology.thin.HilditchThinningStrategy

removePixel(long[], RandomAccessible<BitType>, int) - Method in class net.imagej.ops.morphology.thin.MorphologicalThinningStrategy

removePixel(long[], RandomAccessible<BitType>, int) - Method in interface net.imagej.ops.morphology.thin.ThinningStrategy

This method should determine whether to keep a foreground pixel or not.

removePixel(long[], RandomAccessible<BitType>, int) - Method in class net.imagej.ops.morphology.thin.ZhangSuenThinningStrategy

removePoint(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper

removeProgress(Progress) - Method in class net.imagej.updater.util.AbstractProgressable

removeProgress(Progress) - Method in interface net.imagej.updater.util.Progressable

removeROIMapping(Object) - Method in class net.imagej.omero.DefaultOMEROService

removeROIMapping(Object) - Method in class net.imagej.omero.legacy.LegacyOMEROService

removeROIMapping(Object) - Method in interface net.imagej.omero.OMEROService

Removes the Object ROIData mapping associated with the given key from the stored ROIs.

removeRow(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removeRow(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removeRows(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removeRows(String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removes - Variable in class net.imagej.ui.swing.updater.DiffView

removeSession(OMEROSession) - Method in class net.imagej.omero.DefaultOMEROService

removeSession(OMEROSession) - Method in interface net.imagej.omero.OMEROService

Remove the specified OMEROSession for the cache of stored sessions.

removeToolListener(ToolListener) - Method in class net.imagej.ui.swing.overlay.ToolDelegator

removeUndoableEditListener(UndoableEditListener) - Method in interface net.imagej.ui.swing.overlay.JHotDrawTool

removeUndoableEditListener(UndoableEditListener) - Method in class net.imagej.ui.swing.overlay.ToolDelegator

removeUpdateSite(String) - Method in class net.imagej.updater.FilesCollection

removeUploadSite(List<String>) - Method in class net.imagej.updater.CommandLine

removeUploadSite(String...) - Method in class net.imagej.updater.CommandLine

removeVertex(int) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

If the wrapped PolygonRoi is not associated with an ImagePlus, then this method will always throw an UnsupportedOperationException.

removeVertex(int) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

If the wrapped PolygonRoi is not associated with an ImagePlus, then this method will always throw an UnsupportedOperationException.

removeVertex(int) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape

removeWindow(Frame) - Method in class net.imagej.ui.swing.updater.SwingUserInterface

removeWindow(Frame) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface

removeWindow(Frame) - Method in class net.imagej.updater.util.UpdaterUserInterface

removeWindow(Frame) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface

renameColumn(String, String) - Method in class net.imagej.legacy.convert.TableWrapper

renameUpdateSite(String, String) - Method in class net.imagej.updater.FilesCollection

rendering() - Method in class net.imagej.ImageJ

Gets this application context's RenderingService.

RenderingService - Interface in net.imagej.render

Interface for service that performs text rendering.

renderText(String) - Method in class net.imagej.render.DummyTextRenderer

renderText(String) - Method in interface net.imagej.render.TextRenderer

renderText(String) - Method in class net.imagej.ui.awt.AWTTextRenderer

RenyiEntropy() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.RenyiEntropy

renyiEntropy(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

renyiEntropy(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

renyiEntropy(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

renyiEntropy(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

renyiEntropy(IterableInterval, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

renyiEntropy(IterableInterval, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

ReorderAxis - Class in net.imagej.plugins.commands.restructure

Rearranges the planes along an axis of a Dataset.

ReorderAxis() - Constructor for class net.imagej.plugins.commands.restructure.ReorderAxis

ReorderData - Class in net.imagej.plugins.commands.restructure

Changes the storage order of the pixels of a Dataset.

ReorderData() - Constructor for class net.imagej.plugins.commands.restructure.ReorderData

repitition - Variable in class net.imagej.ops.features.zernike.AbstractZernikeFeature

replaceDependency(FileObject, String, String) - Method in class net.imagej.updater.Conflicts

replaceList(String, String...) - Method in class net.imagej.updater.FileObject

replaceOverlay(int, Overlay) - Method in class net.imagej.display.OverlayInfoList

replaceOverlayInfo(int, OverlayInfo) - Method in class net.imagej.display.OverlayInfoList

replaceUpdateSites(List<UpdateSite>) - Method in class net.imagej.updater.FilesCollection

report(long) - Static method in class net.imagej.patcher.MemoryProfiler

report(File, int) - Static method in class net.imagej.patcher.PerformanceProfiler

Writes a profile report to a file.

report(PrintStream) - Static method in class net.imagej.patcher.PerformanceProfiler

Writes a report.

report(PrintStream, int) - Static method in class net.imagej.patcher.PerformanceProfiler

Writes a report.

report(RealCoords, RealCoords) - Method in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter

report(RealCoords, RealCoords) - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter

report(RealCoords, RealCoords) - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter

report(RealCoords, RealCoords) - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter

report(RealCoords, RealCoords) - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter

reportCaller(PrintStream, int) - Static method in class net.imagej.patcher.PerformanceProfiler

Reports a caller.

request(String[], String, String...) - Method in class net.imagej.util.MediaWikiClient

requiredAxisTypes() - Method in interface net.imagej.omero.roi.OMERORealMask

requiredIntegralImages() - Method in class net.imagej.ops.threshold.apply.LocalThresholdIntegral

requiredIntegralImages() - Method in class net.imagej.ops.threshold.localMean.LocalMeanThresholdIntegral

requiredIntegralImages() - Method in class net.imagej.ops.threshold.localNiblack.LocalNiblackThresholdIntegral

requiredIntegralImages() - Method in class net.imagej.ops.threshold.localPhansalkar.LocalPhansalkarThresholdIntegral

requiredIntegralImages() - Method in class net.imagej.ops.threshold.localSauvola.LocalSauvolaThresholdIntegral

requiresEDT() - Method in class net.imagej.legacy.ui.LegacyUI

reReadUpdateSite(String, Progress) - Method in class net.imagej.updater.FilesCollection

reset() - Method in class net.imagej.legacy.convert.TableWrapper

reset() - Method in class net.imagej.ops.image.integral.IntegralCursor

reset() - Method in class net.imagej.plugins.commands.debug.MandelbrotSetImage

reset() - Method in class net.imagej.Position

Resets the Position for forward or backward traversal.

reset() - Method in class net.imagej.ui.swing.updater.FileDetails

resetColorTables(boolean) - Method in interface net.imagej.display.DatasetView

resetColorTables(boolean) - Method in class net.imagej.display.DefaultDatasetView

resizeBilinear(Output<T>, Output) - Method in class net.imagej.tensorflow.GraphBuilder

resizeBilinear(Output<T>, Output, String) - Method in class net.imagej.tensorflow.GraphBuilder

ResizeImage<T extends RealType<T>> - Class in net.imagej.plugins.commands.imglib

Resamples an existing image into a Dataset of specified dimensions.

ResizeImage() - Constructor for class net.imagej.plugins.commands.imglib.ResizeImage

ResliceImage<T extends RealType<T>> - Class in net.imagej.plugins.commands.imglib

Updates dimensions and data values of an image Dataset.

ResliceImage() - Constructor for class net.imagej.plugins.commands.imglib.ResliceImage

Resolution(String) - Constructor for class net.imagej.updater.Conflicts.Resolution

resolutions - Variable in class net.imagej.updater.Conflicts.Conflict

resolve() - Method in class net.imagej.ui.swing.updater.ConflictDialog

resolve() - Method in class net.imagej.updater.Conflicts.Resolution

ResolveDependencies - Class in net.imagej.ui.swing.updater

This dialog displays the update or upload conflicts for resolution.

ResolveDependencies(UpdaterFrame, FilesCollection) - Constructor for class net.imagej.ui.swing.updater.ResolveDependencies

ResolveDependencies(UpdaterFrame, FilesCollection, boolean) - Constructor for class net.imagej.ui.swing.updater.ResolveDependencies

restart() - Static method in class net.imagej.launcher.ClassLauncher

restoreAttributesTo(Object) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure

restoreLocation() - Method in class net.imagej.legacy.ui.LegacyUI

restoreTransformTo(Object) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure

restoreTransformTo(Object) - Method in class net.imagej.ui.swing.overlay.PointFigure

restoreTransformTo(Object) - Method in class net.imagej.ui.swing.overlay.ThresholdFigure

RestructureUtils - Class in net.imagej.plugins.commands.restructure

Utility class used by the restructure plugins

ResultsImg - Class in net.imagej.table

Expresses a ResultsTable as an Img.

ResultsImg(ResultsTable) - Constructor for class net.imagej.table.ResultsImg

ResultsTable - Interface in net.imagej.table

A table of double-precision floating point values.

ResultsTableColumnWrapper - Class in net.imagej.legacy.convert

Wraps a ResultsTable column as a GenericColumn.

ResultsTableColumnWrapper(ResultsTable, int) - Constructor for class net.imagej.legacy.convert.ResultsTableColumnWrapper

ResultsTableHarmonizer - Class in net.imagej.legacy.translate

Harmonizes data between legacy ImageJ and modern ImageJ ResultsTables

ResultsTableHarmonizer(DisplayService) - Constructor for class net.imagej.legacy.translate.ResultsTableHarmonizer

ResultsTablePreprocessor - Class in net.imagej.legacy.plugin

Injects the singleton ResultsTable when a single ResultsTable is declared as a parameter.

ResultsTablePreprocessor() - Constructor for class net.imagej.legacy.plugin.ResultsTablePreprocessor

ResultsTableToGenericTableConverter - Class in net.imagej.legacy.convert

Converts a ResultsTable to a GenericTable.

ResultsTableToGenericTableConverter() - Constructor for class net.imagej.legacy.convert.ResultsTableToGenericTableConverter

ResultsTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.ResultsTableToResultsTable

ResultsTableUnwrapper - Class in net.imagej.legacy.convert

Converts a ResultsTableWrapper to a ResultsTable via unwrapping.

ResultsTableUnwrapper() - Constructor for class net.imagej.legacy.convert.ResultsTableUnwrapper

ResultsTableWrapper - Class in net.imagej.legacy.convert

Wraps a ResultsTable as a GenericTable.

ResultsTableWrapper(ResultsTable) - Constructor for class net.imagej.legacy.convert.ResultsTableWrapper

retainAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

retainAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

retainAll(Collection<?>) - Method in class net.imagej.legacy.convert.TableListWrapper

retainAll(Collection<?>) - Method in class net.imagej.omero.LazyTableList

retrieve(Module) - Static method in class net.imagej.legacy.plugin.MacroRecorderExcludedInputs

Obtains the cached set of excluded inputs for a particular module instance, clearing it from the data structure.

retrieveModules() - Method in class net.imagej.server.resources.ModulesResource

reverse(Img<T>) - Static method in class net.imagej.tensorflow.Tensors

Flips all dimensions d0,d1,...,dn -> dn,...,d1,d0.

reverse(RandomAccessibleInterval<T>) - Static method in class net.imagej.tensorflow.Tensors

Flips all dimensions d0,d1,...,dn -> dn,...,d1,d0.

revert(Dataset) - Method in interface net.imagej.DatasetService

Deprecated.
Use io.scif.services.DatasetIOService#revert instead.

revert(Dataset) - Method in class net.imagej.DefaultDatasetService

Deprecated.
Use io.scif.services.DatasetIOService#revert instead.

revertUnrealChanges(List<String>) - Method in class net.imagej.updater.CommandLine

ReviewSiteURLsDialog - Class in net.imagej.ui.swing.updater

The dialog in which updated URLs of available update sites will be shown and the user can chose to accept these updates.

ReviewSiteURLsDialog(UpdaterFrame, List<URLChange>) - Constructor for class net.imagej.ui.swing.updater.ReviewSiteURLsDialog

RGB332 - Static variable in class net.imagej.display.ColorTables

rgbChange() - Method in interface net.imagej.Dataset

TODO

rgbChange() - Method in class net.imagej.DefaultDataset

richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, boolean) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, boolean, boolean) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int, UnaryInplaceOp<O, O>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int, UnaryInplaceOp<O, O>, UnaryComputerOp<RandomAccessibleInterval<O>, RandomAccessibleInterval<O>>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int, UnaryInplaceOp<O, O>, UnaryComputerOp<RandomAccessibleInterval<O>, RandomAccessibleInterval<O>>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int, UnaryInplaceOp<O, O>, UnaryComputerOp<RandomAccessibleInterval<O>, RandomAccessibleInterval<O>>, RandomAccessibleInterval<O>, ArrayList<UnaryInplaceOp<RandomAccessibleInterval<O>, RandomAccessibleInterval<O>>>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucy(RandomAccessibleInterval, RandomAccessibleInterval<K>, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucy(RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucy(RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucy(RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucy(RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucy(RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucy(RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, boolean) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucy(RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, boolean, boolean) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucy(RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucy(RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucy(RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int, UnaryInplaceOp<I, I>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucy(RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int, UnaryInplaceOp<I, I>, UnaryComputerOp<RandomAccessibleInterval, RandomAccessibleInterval>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucy(RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int, UnaryInplaceOp<O, O>, UnaryComputerOp<RandomAccessibleInterval<O>, RandomAccessibleInterval<O>>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucy(RandomAccessibleInterval, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int, UnaryInplaceOp<O, O>, UnaryComputerOp<RandomAccessibleInterval<O>, RandomAccessibleInterval<O>>, RandomAccessibleInterval<O>, ArrayList<UnaryInplaceOp<RandomAccessibleInterval<O>, RandomAccessibleInterval<O>>>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

RichardsonLucyC,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>> - Class in net.imagej.ops.deconvolve

Richardson Lucy algorithm for (@link RandomAccessibleInterval) (Lucy, L.

RichardsonLucyC() - Constructor for class net.imagej.ops.deconvolve.RichardsonLucyC

richardsonLucyCorrection(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<O>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

RichardsonLucyCorrection,O extends RealType<O>,C extends ComplexType<C>> - Class in net.imagej.ops.deconvolve

Computes Richardson Lucy correction factor for (@link RandomAccessibleInterval) (Lucy, L.

RichardsonLucyCorrection() - Constructor for class net.imagej.ops.deconvolve.RichardsonLucyCorrection

richardsonLucyTV(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucyTV(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucyTV(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucyTV(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucyTV(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucyTV(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucyTV(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, boolean, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucyTV(RandomAccessibleInterval<O>, RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, boolean, boolean, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucyTV(RandomAccessibleInterval, RandomAccessibleInterval<K>, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucyTV(RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucyTV(RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucyTV(RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucyTV(RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucyTV(RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucyTV(RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, boolean, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

richardsonLucyTV(RandomAccessibleInterval, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, boolean, boolean, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

Deprecated.

RichardsonLucyTVUpdate<T extends RealType<T> & NativeType<T>,I extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.deconvolve

Implements update step for Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution Microsc Res Rech 2006 Apr; 69(4)- 260-6 The div_unit_grad function has been adapted from IOCBIOS, Pearu Peterson https://code.google.com/p/iocbio/

RichardsonLucyTVUpdate() - Constructor for class net.imagej.ops.deconvolve.RichardsonLucyTVUpdate

richardsonLucyUpdate(RandomAccessibleInterval<O>, RandomAccessibleInterval<O>, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucyUpdate(RandomAccessibleInterval<O>, RandomAccessibleInterval<O>, float, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

richardsonLucyUpdate(RandomAccessibleInterval<O>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace

RichardsonLucyUpdate<T extends RealType<T>> - Class in net.imagej.ops.deconvolve

Implements update step for Richardson-Lucy algorithm on RandomAccessibleInterval.

RichardsonLucyUpdate() - Constructor for class net.imagej.ops.deconvolve.RichardsonLucyUpdate

RidgeDetectionMetadata - Class in net.imagej.ops.segment.detectRidges

Helper Method to generate the meta image used for DefaultDetectRidges

RidgeDetectionMetadata(RandomAccessibleInterval<T>, double, double, double) - Constructor for class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata

Generates the metadata images from the input image

RidgeDetectionUtils - Class in net.imagej.ops.segment.detectRidges

RidgeDetectionUtils() - Constructor for class net.imagej.ops.segment.detectRidges.RidgeDetectionUtils

rightDiv(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator

rightPanel - Variable in class net.imagej.ui.swing.updater.UpdaterFrame

rightShift(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator

rightShift(int, int) - Method in class net.imagej.ops.math.MathNamespace

rightShift(long, long) - Method in class net.imagej.ops.math.MathNamespace

RodbardAxis - Class in net.imagej.axis

RodbardAxis is a CalibratedAxis that scales raw values by the equation y = a + (b-a) / (1 + (x/c)^d).

RodbardAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.RodbardAxis

ROI_PROPERTY - Static variable in interface net.imagej.roi.ROIService

ROIConverters - Class in net.imagej.omero.roi

Utility class for working with ROI converters.

ROIConverters() - Constructor for class net.imagej.omero.roi.ROIConverters

ROIDataToOMEROROICollection - Class in net.imagej.omero.roi

Converts an OMERO ROIData to an OMEROROICollection.

ROIDataToOMEROROICollection() - Constructor for class net.imagej.omero.roi.ROIDataToOMEROROICollection

RoiManagerPreprocessor - Class in net.imagej.legacy.plugin

Injects the singleton RoiManager when a single RoiManager is declared as a parameter.

RoiManagerPreprocessor() - Constructor for class net.imagej.legacy.plugin.RoiManagerPreprocessor

Rois - Class in net.imagej.legacy.convert.roi

Utility class for ROI wrappers and converters.

Rois() - Constructor for class net.imagej.legacy.convert.roi.Rois

ROIService - Interface in net.imagej.roi

Service for working with Regions of Interest (ROI).

RoiToBoxConverter - Class in net.imagej.legacy.convert.roi.box

Converts an ImageJ 1.x Roi of type Roi.RECTANGLE with corner diameter = 0 to an ImgLib2 Box.

RoiToBoxConverter() - Constructor for class net.imagej.legacy.convert.roi.box.RoiToBoxConverter

RoiToBoxOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.RoiToBoxOMEROConverter

RoiToMaskIntervalConverter - Class in net.imagej.legacy.convert.roi

Converts an ImageJ 1.x Roi to an Imglib2 MaskInterval.

RoiToMaskIntervalConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiToMaskIntervalConverter

RoiToMaskIntervalOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.RoiToMaskIntervalOMEROConverter

ROITree - Interface in net.imagej.roi

A tree of ROIs.

ROITreeToOverlay - Class in net.imagej.omero.legacy.convert

Converts a ROITree containing ROIs to an Overlay containing equivalent ROIs.

ROITreeToOverlay() - Constructor for class net.imagej.omero.legacy.convert.ROITreeToOverlay

ROITreeToOverlayConverter - Class in net.imagej.legacy.convert

Converts a ROITree to an Overlay.

ROITreeToOverlayConverter() - Constructor for class net.imagej.legacy.convert.ROITreeToOverlayConverter

RoiUnwrappers - Class in net.imagej.legacy.convert.roi

Converters which unwrap wrapped ImageJ 1.x Rois.

RoiUnwrappers.WrapperToEllipseRoiConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped EllipseRois.

RoiUnwrappers.WrapperToLineConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped Lines.

RoiUnwrappers.WrapperToOvalRoiConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped OvalRois.

RoiUnwrappers.WrapperToPointRoiConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped PointRoi.

RoiUnwrappers.WrapperToPolygonRoiConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped PolygonRoi.

RoiUnwrappers.WrapperToRoiConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped Rois.

RoiUnwrappers.WrapperToRotatedRectRoiConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped RotatedRectRoi.

RoiUnwrappers.WrapperToShapeRoiConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped ShapeRois.

RoiWrapper - Class in net.imagej.legacy.convert.roi.box

Wraps an ImageJ 1.x Roi as an ImgLib2 Box.

RoiWrapper(double, double, double, double) - Constructor for class net.imagej.legacy.convert.roi.box.RoiWrapper

Creates an ImageJ 1.x Roi and then wraps it as an ImgLib2 Box.

RoiWrapper(Roi) - Constructor for class net.imagej.legacy.convert.roi.box.RoiWrapper

Wraps an ImageJ 1.x Roi as an ImgLib2 Box.

RoiWrapperToRectangleData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.RoiWrapperToRectangleData

rootPanel - Variable in class net.imagej.ui.swing.updater.ConflictDialog

Rosin() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Rosin

rosin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

rosin(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

rosin(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

rosin(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

rosin(IterableInterval, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

rosin(IterableInterval, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

rotate(Vector3f, Quaternionfc) - Method in class net.imagej.ops.linalg.LinAlgNamespace

rotate(Vector3f, Vector3f, Quaternionfc) - Method in class net.imagej.ops.linalg.LinAlgNamespace

rotate(Vector3d, Quaterniondc) - Method in class net.imagej.ops.linalg.LinAlgNamespace

rotate(Vector3d, Vector3d, Quaterniondc) - Method in class net.imagej.ops.linalg.LinAlgNamespace

rotate(Vector3d, AxisAngle4d) - Method in class net.imagej.ops.linalg.LinAlgNamespace

rotate(Vector3f, AxisAngle4f) - Method in class net.imagej.ops.linalg.LinAlgNamespace

rotate(Vector3d, Vector3d, AxisAngle4d) - Method in class net.imagej.ops.linalg.LinAlgNamespace

rotate(Vector3f, Vector3f, AxisAngle4f) - Method in class net.imagej.ops.linalg.LinAlgNamespace

rotate1(Vector3d, Quaterniondc) - Method in class net.imagej.ops.linalg.LinAlgNamespace

rotate1(Vector3f, Quaternionfc) - Method in class net.imagej.ops.linalg.LinAlgNamespace

rotate1(Vector3d, AxisAngle4d) - Method in class net.imagej.ops.linalg.LinAlgNamespace

rotate1(Vector3f, AxisAngle4f) - Method in class net.imagej.ops.linalg.LinAlgNamespace

Rotate3d - Class in net.imagej.ops.linalg.rotate

Rotates the vector by the quaternion.

Rotate3d() - Constructor for class net.imagej.ops.linalg.rotate.Rotate3d

Rotate3f - Class in net.imagej.ops.linalg.rotate

Rotates the vector by the quaternion.

Rotate3f() - Constructor for class net.imagej.ops.linalg.rotate.Rotate3f

Rotate90DegreesLeft - Class in net.imagej.plugins.commands.rotate

Modifies an input Dataset by rotating its pixels 90 degrees to the left.

Rotate90DegreesLeft() - Constructor for class net.imagej.plugins.commands.rotate.Rotate90DegreesLeft

Rotate90DegreesRight - Class in net.imagej.plugins.commands.rotate

Modifies an input Dataset by rotating its pixels 90 degrees to the right.

Rotate90DegreesRight() - Constructor for class net.imagej.plugins.commands.rotate.Rotate90DegreesRight

RotateImageXY<T extends RealType<T>> - Class in net.imagej.plugins.commands.imglib

Rotates an existing image by a user specified angle.

RotateImageXY() - Constructor for class net.imagej.plugins.commands.imglib.RotateImageXY

rotateView(RandomAccessible<T>, int, int) - Method in class net.imagej.ops.transform.TransformNamespace

Create view that is rotated by 90 degrees.

rotateView(RandomAccessibleInterval<T>, int, int) - Method in class net.imagej.ops.transform.TransformNamespace

Create view that is rotated by 90 degrees and preserves interval bounds.

round(double) - Method in class net.imagej.ops.math.MathNamespace

round(float) - Method in class net.imagej.ops.math.MathNamespace

round(O, I) - Method in class net.imagej.ops.math.MathNamespace

Round() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Round

roundness(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

roundness(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

row2file - Variable in class net.imagej.ui.swing.updater.FileTable

rowChanged(int) - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel

rowsChanged() - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel

rowsChanged(int, int) - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel

rowToFile - Variable in class net.imagej.ui.swing.updater.FileTable.FileTableModel

RRARIToRealMaskRealIntervalConverter - Class in net.imagej.roi

Converts a RealRandomAccessibleRealInterval<BoolType> to RealMaskRealInterval.

RRARIToRealMaskRealIntervalConverter() - Constructor for class net.imagej.roi.RRARIToRealMaskRealIntervalConverter

RRAToRealMaskConverter - Class in net.imagej.roi

Converts a RealRandomAccessible<BoolType> to RealMask.

RRAToRealMaskConverter() - Constructor for class net.imagej.roi.RRAToRealMaskConverter

RTs - Class in net.imagej.ops.special.chain

Utility class for working with RealTypes.

run(String, String) - Method in class imagej.patcher.LegacyEnvironment

Deprecated.

Runs IJ.run(command, options) in the legacy environment.

run() - Method in class net.imagej.animation.Animation

run() - Method in class net.imagej.app.AboutImageJ

run() - Method in class net.imagej.app.Preferences

run() - Method in class net.imagej.app.QuitProgram

run() - Method in class net.imagej.command.AbstractPlanarCommand

run(RandomAccessibleInterval<?>) - Method in interface net.imagej.command.PlanarCommand

As Runnable.run(), but operating only on the specified plane.

run() - Method in class net.imagej.display.SelectWindow

run(String[]) - Static method in class net.imagej.launcher.ClassLauncher

run() - Method in class net.imagej.legacy.command.LegacyCommand

run(String) - Method in class net.imagej.legacy.IJ1Helper

Evaluates the specified command.

run(Object, Object...) - Method in class net.imagej.legacy.LegacyCodeRunner

run(Object, Map<String, Object>) - Method in class net.imagej.legacy.LegacyCodeRunner

Run() - Constructor for class net.imagej.legacy.LegacyCommandline.Run

run() - Method in class net.imagej.legacy.plugin.GetPath

run() - Method in class net.imagej.legacy.plugin.LegacyInitializer

run() - Method in class net.imagej.legacy.search.FocusSearchBar

run() - Method in class net.imagej.legacy.search.SearchOptions

run() - Method in class net.imagej.lut.LUTSelector

run() - Method in class net.imagej.omero.commands.OpenFromOMERO

run() - Method in class net.imagej.omero.commands.SaveToOMERO

run() - Method in class net.imagej.ops.commands.coloc.Colocalize

run() - Method in class net.imagej.ops.commands.convert.ConvertImgPlus

run() - Method in class net.imagej.ops.commands.convolve.Convolve

run() - Method in class net.imagej.ops.commands.filter.FrangiVesselness

run() - Method in class net.imagej.ops.commands.morphology.FillHoles

run() - Method in class net.imagej.ops.commands.project.ProjectCommand

run() - Method in class net.imagej.ops.commands.threshold.GlobalThresholder

run() - Method in class net.imagej.ops.geom.geom3d.mesh.BitTypeVertexInterpolator

run() - Method in class net.imagej.ops.geom.geom3d.mesh.DefaultVertexInterpolator

run() - Method in class net.imagej.ops.help.HelpCandidates

run() - Method in class net.imagej.ops.help.HelpForNamespace

run() - Method in class net.imagej.ops.help.HelpForOp

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.BooleanAnd

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.BooleanEqual

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.BooleanNot

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.BooleanNotEqual

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.BooleanOr

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.BooleanXor

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.DoubleEqual

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.DoubleGreaterThan

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.DoubleGreaterThanOrEqual

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.DoubleLessThan

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.DoubleLessThanOrEqual

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.DoubleNotEqual

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.FloatEqual

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.FloatGreaterThan

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.FloatGreaterThanOrEqual

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.FloatLessThan

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.FloatLessThanOrEqual

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.FloatNotEqual

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.IntegerEqual

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.IntegerGreaterThan

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.IntegerGreaterThanOrEqual

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.IntegerLessThan

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.IntegerLessThanOrEqual

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.IntegerNotEqual

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.LongEqual

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.LongGreaterThan

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.LongGreaterThanOrEqual

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.LongLessThan

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.LongLessThanOrEqual

run() - Method in class net.imagej.ops.logic.PrimitiveLogic.LongNotEqual

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleAbs

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleAdd

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleArccos

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleArcsin

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleArctan

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleCeil

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleCos

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleCosh

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleCubeRoot

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleDivide

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleExp

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleFloor

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleLog

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleLog10

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleLogOnePlusX

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleMax

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleMin

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleMultiply

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleNegate

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoublePower

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleRemainder

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleRound

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleSignum

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleSin

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleSinh

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleSqrt

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleSubtract

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleTan

run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleTanh

run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatAbs

run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatAdd

run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatDivide

run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatMax

run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatMin

run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatMultiply

run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatNegate

run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatRemainder

run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatRound

run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatSignum

run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatSubtract

run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerAbs

run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerAdd

run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerAnd

run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerComplement

run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerDivide

run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerLeftShift

run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerMax

run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerMin

run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerMultiply

run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerNegate

run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerOr

run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerRemainder

run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerRightShift

run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerSubtract

run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerUnsignedRightShift

run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerXor

run() - Method in class net.imagej.ops.math.PrimitiveMath.LongAbs

run() - Method in class net.imagej.ops.math.PrimitiveMath.LongAdd

run() - Method in class net.imagej.ops.math.PrimitiveMath.LongAnd

run() - Method in class net.imagej.ops.math.PrimitiveMath.LongComplement

run() - Method in class net.imagej.ops.math.PrimitiveMath.LongDivide

run() - Method in class net.imagej.ops.math.PrimitiveMath.LongLeftShift

run() - Method in class net.imagej.ops.math.PrimitiveMath.LongMax

run() - Method in class net.imagej.ops.math.PrimitiveMath.LongMin

run() - Method in class net.imagej.ops.math.PrimitiveMath.LongMultiply

run() - Method in class net.imagej.ops.math.PrimitiveMath.LongNegate

run() - Method in class net.imagej.ops.math.PrimitiveMath.LongOr

run() - Method in class net.imagej.ops.math.PrimitiveMath.LongRemainder

run() - Method in class net.imagej.ops.math.PrimitiveMath.LongRightShift

run() - Method in class net.imagej.ops.math.PrimitiveMath.LongSubtract

run() - Method in class net.imagej.ops.math.PrimitiveMath.LongUnsignedRightShift

run() - Method in class net.imagej.ops.math.PrimitiveMath.LongXor

run(String, Object...) - Method in interface net.imagej.ops.OpEnvironment

Executes the given operation with the specified arguments.

run(Class<? extends Op>, Object...) - Method in interface net.imagej.ops.OpEnvironment

Executes the operation of the given type with the specified arguments.

run(Op, Object...) - Method in interface net.imagej.ops.OpEnvironment

Executes the given Op with the specified arguments.

run(Module) - Static method in interface net.imagej.ops.OpEnvironment

run(I1, I2, O) - Method in interface net.imagej.ops.special.BinaryOp

Executes the operation in a type-safe but flexible way.

run() - Method in interface net.imagej.ops.special.BinaryOp

run(I1, I2, O) - Method in interface net.imagej.ops.special.computer.BinaryComputerOp

run() - Method in interface net.imagej.ops.special.computer.BinaryComputerOp

run(O) - Method in interface net.imagej.ops.special.computer.NullaryComputerOp

run() - Method in interface net.imagej.ops.special.computer.NullaryComputerOp

run(I, O) - Method in interface net.imagej.ops.special.computer.UnaryComputerOp

run() - Method in interface net.imagej.ops.special.computer.UnaryComputerOp

run() - Method in class net.imagej.ops.special.function.AbstractBinaryFunctionOp

run() - Method in class net.imagej.ops.special.function.AbstractNullaryFunctionOp

run() - Method in class net.imagej.ops.special.function.AbstractUnaryFunctionOp

run(I1, I2, O) - Method in interface net.imagej.ops.special.function.BinaryFunctionOp

run(O) - Method in interface net.imagej.ops.special.function.NullaryFunctionOp

run(I, O) - Method in interface net.imagej.ops.special.function.UnaryFunctionOp

run(I1, I2, O) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCF

run() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCF

run(I, I, O) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCFI

run() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCFI

run(I1, I2, O) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCFI1

run() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCFI1

run(I, I, O) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCI

run(I1, I2, O) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCI1

run() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCI1

run(O) - Method in interface net.imagej.ops.special.hybrid.NullaryHybridCF

run() - Method in interface net.imagej.ops.special.hybrid.NullaryHybridCF

run(I, O) - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCF

run() - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCF

run(I, O) - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCFI

run(O) - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCFI

run() - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCFI

run(I, O) - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCI

run(O) - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCI

run() - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCI

run(I1, I2, O) - Method in interface net.imagej.ops.special.inplace.BinaryInplace1Op

run() - Method in interface net.imagej.ops.special.inplace.BinaryInplace1Op

run(I, I, O) - Method in interface net.imagej.ops.special.inplace.BinaryInplaceOp

run(I, O) - Method in interface net.imagej.ops.special.inplace.UnaryInplaceOp

run(O) - Method in interface net.imagej.ops.special.inplace.UnaryInplaceOp

run(O) - Method in interface net.imagej.ops.special.NullaryOp

Executes the operation in a type-safe but flexible way.

run() - Method in interface net.imagej.ops.special.NullaryOp

run(I, O) - Method in interface net.imagej.ops.special.UnaryOp

Executes the operation in a type-safe but flexible way.

run() - Method in interface net.imagej.ops.special.UnaryOp

run() - Method in class net.imagej.ops.thread.chunker.ChunkerInterleaved

run() - Method in class net.imagej.ops.thread.chunker.DefaultChunker

run() - Method in class net.imagej.options.OptionsOverlay

run() - Method in class net.imagej.options.OptionsReset

run(String, String) - Method in class net.imagej.patcher.LegacyEnvironment

Runs IJ.run(command, options) in the legacy environment.

run() - Method in class net.imagej.plugins.commands.animation.AnimationOptions

Updates a display's set of animation options.

run() - Method in class net.imagej.plugins.commands.animation.StartAnimation

run() - Method in class net.imagej.plugins.commands.animation.StopAllAnimations

run() - Method in class net.imagej.plugins.commands.animation.StopAnimation

run() - Method in class net.imagej.plugins.commands.app.CopyToSystem

run() - Method in class net.imagej.plugins.commands.app.EasterEgg

run() - Method in class net.imagej.plugins.commands.app.ImageJWebsite

run() - Method in class net.imagej.plugins.commands.app.ListShortcuts

run() - Method in class net.imagej.plugins.commands.assign.AbsDataValues

run() - Method in class net.imagej.plugins.commands.assign.AddNoiseToDataValues

run() - Method in class net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues

run() - Method in class net.imagej.plugins.commands.assign.EquationDataValues

run() - Method in class net.imagej.plugins.commands.assign.ExpDataValues

run() - Method in class net.imagej.plugins.commands.assign.FillDataValues

run() - Method in class net.imagej.plugins.commands.assign.InplaceUnaryTransform

run() - Method in class net.imagej.plugins.commands.assign.InvertDataValues

run() - Method in class net.imagej.plugins.commands.assign.LogDataValues

run() - Method in class net.imagej.plugins.commands.assign.MathCommand

run() - Method in class net.imagej.plugins.commands.assign.NoiseAdder

Runs the operation and returns the Dataset that contains the output data

run() - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin

run() - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionAdaptiveMedian

run() - Method in class net.imagej.plugins.commands.assign.noisereduce.RadialNeighborhoodSpecifier

run() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier

run() - Method in class net.imagej.plugins.commands.assign.ReciprocalDataValues

run() - Method in class net.imagej.plugins.commands.assign.SquareDataValues

run() - Method in class net.imagej.plugins.commands.assign.SquareRootDataValues

run() - Method in class net.imagej.plugins.commands.axispos.AxisPositionBackward

run() - Method in class net.imagej.plugins.commands.axispos.AxisPositionForward

run() - Method in class net.imagej.plugins.commands.axispos.SetActiveAxis

run() - Method in class net.imagej.plugins.commands.axispos.SetAxisPosition

run() - Method in class net.imagej.plugins.commands.binary.AbstractMorphOpsCommand

run() - Method in class net.imagej.plugins.commands.binary.Binarize

run() - Method in class net.imagej.plugins.commands.binary.CreateMask

run() - Method in class net.imagej.plugins.commands.binary.MakeBinary

run() - Method in class net.imagej.plugins.commands.calculator.ImageCalculator

Runs the plugin filling the output image with the user specified binary combination of the two input images.

run() - Method in class net.imagej.plugins.commands.correlate.AbstractShadows

run() - Method in class net.imagej.plugins.commands.correlate.Correlation3x3Operation

Runs the correlation and replaces pixels in place with correlated values

run() - Method in class net.imagej.plugins.commands.correlate.ShadowsDemo

Runs the plugin.

run() - Method in class net.imagej.plugins.commands.correlate.SharpenDataValues

run() - Method in class net.imagej.plugins.commands.correlate.SmoothDataValues

run() - Method in class net.imagej.plugins.commands.dataset.LoadDataset

run() - Method in class net.imagej.plugins.commands.debug.ButtonDemo

run() - Method in class net.imagej.plugins.commands.debug.InspectImg

run() - Method in class net.imagej.plugins.commands.debug.MeasurementDemo

run() - Method in class net.imagej.plugins.commands.debug.MultidimImage

run() - Method in class net.imagej.plugins.commands.debug.PointSetDemo

run() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo

run() - Method in class net.imagej.plugins.commands.debug.TableDemo

run() - Method in class net.imagej.plugins.commands.display.AutoContrast

run() - Method in class net.imagej.plugins.commands.display.CaptureImage

run() - Method in class net.imagej.plugins.commands.display.CaptureScreen

run() - Method in class net.imagej.plugins.commands.display.ChannelsTool

run() - Method in class net.imagej.plugins.commands.display.DeselectOverlays

run() - Method in class net.imagej.plugins.commands.display.Flatten

run() - Method in class net.imagej.plugins.commands.display.HistogramPlot

run() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast

run() - Method in class net.imagej.plugins.commands.display.interactive.DeleteThreshold

run() - Method in class net.imagej.plugins.commands.display.interactive.Threshold

run() - Method in class net.imagej.plugins.commands.display.RemoveOverlay

run() - Method in class net.imagej.plugins.commands.display.RemoveOverlayReferences

run() - Method in class net.imagej.plugins.commands.display.SelectOverlays

run() - Method in class net.imagej.plugins.commands.display.SelectView

run() - Method in class net.imagej.plugins.commands.display.ShowLUT

run() - Method in class net.imagej.plugins.commands.display.ShowLUTAsTable

run() - Method in class net.imagej.plugins.commands.display.SpectralComposite

run() - Method in class net.imagej.plugins.commands.imglib.Binner

run() - Method in class net.imagej.plugins.commands.imglib.CropImage

Runs the crop process on the given display's active dataset.

run() - Method in class net.imagej.plugins.commands.imglib.DuplicateImage

run() - Method in class net.imagej.plugins.commands.imglib.DuplicateImageContext

run() - Method in class net.imagej.plugins.commands.imglib.GaussianBlur

run() - Method in class net.imagej.plugins.commands.imglib.ImgLibDataTransform

run() - Method in class net.imagej.plugins.commands.imglib.NanBackground

run() - Method in class net.imagej.plugins.commands.imglib.ResizeImage

run() - Method in class net.imagej.plugins.commands.imglib.ResliceImage

run() - Method in class net.imagej.plugins.commands.imglib.RotateImageXY

run() - Method in class net.imagej.plugins.commands.imglib.SaltAndPepper

run() - Method in class net.imagej.plugins.commands.imglib.TranslateImage

run() - Method in class net.imagej.plugins.commands.io.NewImage

run() - Method in class net.imagej.plugins.commands.misc.ApplyLookupTable

run() - Method in class net.imagej.plugins.commands.misc.ShowInfo

run() - Method in class net.imagej.plugins.commands.neigh.FindEdges

Sets the output Dataset to the result of the find edges operation

run() - Method in class net.imagej.plugins.commands.neigh.Neighborhood3x3Operation

run() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties

run() - Method in class net.imagej.plugins.commands.overlay.ConvertToMask

run() - Method in class net.imagej.plugins.commands.overlay.FromOverlayManager

run() - Method in class net.imagej.plugins.commands.overlay.OverlayLabels

run() - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify

run() - Method in class net.imagej.plugins.commands.restructure.AddAxis

Creates new ImgPlus data with an additional axis.

run() - Method in class net.imagej.plugins.commands.restructure.AddData

Creates new ImgPlus data copying pixel values as needed from an input Dataset.

run() - Method in class net.imagej.plugins.commands.restructure.DeleteAxis

Creates new ImgPlus data with one less axis.

run() - Method in class net.imagej.plugins.commands.restructure.DeleteData

Creates new ImgPlus data copying pixel values as needed from an input Dataset.

run() - Method in class net.imagej.plugins.commands.restructure.EditAxes

Assigns axis attributes to the axes of the input dataset.

run() - Method in class net.imagej.plugins.commands.restructure.FlipAxis

run() - Method in class net.imagej.plugins.commands.restructure.ReorderAxis

run() - Method in class net.imagej.plugins.commands.restructure.ReorderData

Runs the plugin and reorders data as specified by user.

run() - Method in class net.imagej.plugins.commands.restructure.SplitChannelsContext

run() - Method in class net.imagej.plugins.commands.rotate.FlipHorizontally

run() - Method in class net.imagej.plugins.commands.rotate.FlipVertically

run() - Method in class net.imagej.plugins.commands.rotate.Rotate90DegreesLeft

run() - Method in class net.imagej.plugins.commands.rotate.Rotate90DegreesRight

run() - Method in class net.imagej.plugins.commands.typechange.TypeChanger

run(File, StatusService, LogService) - Static method in class net.imagej.plugins.commands.upload.SampleImageUploader

This method provides a Java API to upload sample images to the ImageJ2 dropbox.

run() - Method in class net.imagej.plugins.commands.upload.SampleImageUploader

run() - Method in class net.imagej.plugins.commands.zoom.Zoom100Percent

run() - Method in class net.imagej.plugins.commands.zoom.ZoomIn

run() - Method in class net.imagej.plugins.commands.zoom.ZoomOriginalScale

run() - Method in class net.imagej.plugins.commands.zoom.ZoomOut

run() - Method in class net.imagej.plugins.commands.zoom.ZoomSet

run() - Method in class net.imagej.plugins.commands.zoom.ZoomToSelection

run() - Method in class net.imagej.plugins.tools.FloodFillToolConfig

Configures the connectivity of the FloodFillTool

run() - Method in class net.imagej.plugins.tools.KonamiHandler

run() - Method in class net.imagej.plugins.tools.PaintBrushToolConfig

run() - Method in class net.imagej.plugins.tools.PencilToolConfig

run() - Method in class net.imagej.plugins.tools.SprayCanToolConfig

run() - Method in class net.imagej.server.commands.StartServer

run() - Method in class net.imagej.server.commands.StopServer

run() - Method in class net.imagej.server.external.ScriptEval

run() - Method in class net.imagej.server.external.WebClientDemo

run(ImageJServerConfiguration, Environment) - Method in class net.imagej.server.ImageJServer

run() - Method in class net.imagej.server.utilities.MenuProvider

run() - Method in class net.imagej.tensorflow.demo.LabelImage

run() - Method in class net.imagej.tensorflow.ui.TensorFlowLibraryManagementCommand

run() - Method in class net.imagej.ui.swing.commands.OverlayManager

run() - Method in class net.imagej.ui.swing.updater.ImageJUpdater

run() - Method in class net.imagej.updater.CheckForUpdates

run() - Method in class net.imagej.updater.PromptUserToUpdate

run() - Method in class net.imagej.updater.util.InputStream2OutputStream

run() - Method in class net.imagej.util.MirrorWebsite

runAfterRefreshMenus() - Method in class imagej.patcher.LegacyHooks

Deprecated.

Extension point to run after Help>Refresh Menus

runAfterRefreshMenus() - Method in class net.imagej.legacy.DefaultLegacyHooks

runAfterRefreshMenus() - Method in class net.imagej.patcher.LegacyHooks

Extension point to run after Help>Refresh Menus

RunByName - Class in net.imagej.ops.run

Implementation of "run" that invokes the op by name.

RunByName() - Constructor for class net.imagej.ops.run.RunByName

RunByOp - Class in net.imagej.ops.run

Implementation of "run" that invokes the specified Op instance.

RunByOp() - Constructor for class net.imagej.ops.run.RunByOp

RunByType - Class in net.imagej.ops.run

Implementation of "run" that invokes the op by type.

RunByType() - Constructor for class net.imagej.ops.run.RunByType

runLegacyCommand(String, String) - Method in class net.imagej.legacy.LegacyService

Runs a legacy command programmatically.

runLegacyCompatibleCommand(String) - Method in class net.imagej.legacy.LegacyService

Runs the legacy compatible command with the given identifier.

runMacro(String, String) - Method in class imagej.patcher.LegacyEnvironment

Deprecated.

Runs IJ.runMacro(macro, arg) in the legacy environment.

runMacro(String) - Method in class net.imagej.legacy.IJ1Helper

Evaluates the specified macro.

runMacro(String, String) - Method in class net.imagej.patcher.LegacyEnvironment

Runs IJ.runMacro(macro, arg) in the legacy environment.

runMacroFile(String, String) - Method in class net.imagej.legacy.IJ1Helper

Evaluates the specified macro.

runModule(String, Map<String, Object>, boolean) - Method in class net.imagej.server.resources.ModulesResource

Executes a module with given ID.

RunOpSearchActionFactory - Class in net.imagej.ops.search

Search action for executing an op.

RunOpSearchActionFactory() - Constructor for class net.imagej.ops.search.RunOpSearchActionFactory

runPlugIn(String, String) - Method in class imagej.patcher.LegacyEnvironment

Deprecated.

Runs IJ.runPlugIn(className, arg) in the legacy environment.

runPlugIn(String, String) - Method in class net.imagej.patcher.LegacyEnvironment

Runs IJ.runPlugIn(className, arg) in the legacy environment.

runRemote(Throwable) - Static method in class net.imagej.launcher.RemoteUpdater

Runs the ImageJ updater via the bootstrap.js script, hosted on the main update site.

runtime - Static variable in class net.imagej.patcher.MemoryProfiler

S

SaltAndPepper - Class in net.imagej.plugins.commands.imglib

Adds salt and pepper noise to an image.

SaltAndPepper() - Constructor for class net.imagej.plugins.commands.imglib.SaltAndPepper

sameIterationOrder(Iterable<?>, Iterable<?>) - Static method in class net.imagej.ops.coloc.ColocUtil

sampleAllPlanes(ImageDisplay) - Static method in class net.imagej.sampler.SamplingDefinition

A convenience method for defining a SamplingDefinition that returns a complete copy of an ImageDisplay.

sampleCompositeUVPlane(ImageDisplay, AxisType, AxisType) - Static method in class net.imagej.sampler.SamplingDefinition

A convenience method for defining a SamplingDefinition that returns a composite (multichannel) UV plane of an ImageDisplay.

sampleCompositeXYPlane(ImageDisplay) - Static method in class net.imagej.sampler.SamplingDefinition

A convenience method for defining a SamplingDefinition that returns a composite (multichannel) XY plane of an ImageDisplay.

SampleImageUploader - Class in net.imagej.plugins.commands.upload

Uploads a sample image to the ImageJDev server for further inspection by the developers.

SampleImageUploader() - Constructor for class net.imagej.plugins.commands.upload.SampleImageUploader

sampler() - Method in class net.imagej.ImageJ

Gets this application context's SamplerService.

SamplerService - Interface in net.imagej.sampler

Interface for sampler operations which manipulate ImageDisplay data.

sampleUVPlane(ImageDisplay, AxisType, AxisType) - Static method in class net.imagej.sampler.SamplingDefinition

A convenience method for defining a SamplingDefinition that returns a single UV plane of an ImageDisplay.

sampleXYPlane(ImageDisplay) - Static method in class net.imagej.sampler.SamplingDefinition

A convenience method for defining a SamplingDefinition that returns a single XY plane of an ImageDisplay.

SamplingDefinition - Class in net.imagej.sampler

SamplingDefinitions define regions of space and are used by the SamplerService to pull data out of existing ImageDisplays.

save(Dataset, String) - Method in interface net.imagej.DatasetService

Deprecated.
Use io.scif.services.DatasetIOService#save instead.

save(Dataset, String, Object) - Method in interface net.imagej.DatasetService

Deprecated.
Use io.scif.services.DatasetIOService#save instead.

save(Dataset, String) - Method in class net.imagej.DefaultDatasetService

Deprecated.
Use io.scif.services.DatasetIOService#save instead.

save(Dataset, String, Object) - Method in class net.imagej.DefaultDatasetService

Deprecated.
Use io.scif.services.DatasetIOService#save instead.

save(Mesh, String) - Method in class net.imagej.mesh.io.ply.PLYMeshIO

save(Mesh, String) - Method in class net.imagej.mesh.io.stl.STLMeshIO

save() - Method in class net.imagej.options.OptionsChannels

save() - Method in class net.imagej.options.OptionsMemoryAndThreads

Saves the instance variable fields to persistent storage.

save(GenericTable, String) - Method in class net.imagej.server.external.DefaultTableIOPlugin

saveDialog(String, File, String) - Method in class net.imagej.legacy.IJ1Helper

Uses ImageJ 1.x' SaveDialog

saveInterpreter() - Static method in class net.imagej.legacy.plugin.IJ1MacroEngine

Called by ImageJ 1.x at the beginning of each macro execution.

saveLocation() - Method in class net.imagej.legacy.ui.LegacyUI

savePreferences() - Method in class net.imagej.ui.swing.updater.SwingUserInterface

savePreferences() - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface

savePreferences() - Method in class net.imagej.updater.util.UpdaterUserInterface

savePreferences() - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface

SaveToOMERO - Class in net.imagej.omero.commands

A command to export objects to an OMERO database.

SaveToOMERO() - Constructor for class net.imagej.omero.commands.SaveToOMERO

scale() - Method in class net.imagej.axis.DefaultLinearAxis

scale() - Method in interface net.imagej.axis.LinearAxis

scale(O, I) - Method in class net.imagej.ops.convert.ConvertNamespace

scale() - Method in class net.imagej.units.LinearCalibrator

ScaleRealTypes,O extends RealType<O>> - Class in net.imagej.ops.convert.scale

Scales input values to their corresponding value in the output type range.

ScaleRealTypes() - Constructor for class net.imagej.ops.convert.scale.ScaleRealTypes

scaleView(RandomAccessibleInterval<T>, double[], InterpolatorFactory<T, RandomAccessible<T>>) - Method in class net.imagej.ops.transform.TransformNamespace

Executes the "scale" operation on the given arguments.

scaleView(RandomAccessibleInterval<T>, double[], InterpolatorFactory<T, RandomAccessible<T>>, OutOfBoundsFactory<T, RandomAccessible<T>>) - Method in class net.imagej.ops.transform.TransformNamespace

Executes the "scale" operation on the given arguments while preserving interval bounds.

scifio() - Method in class net.imagej.ImageJ

screenCapture() - Method in class net.imagej.ImageJ

Gets this application context's ScreenCaptureService.

ScreenCaptureService - Interface in net.imagej.display

An interface for supporting the capturing of screen data to a Dataset.

ScriptEval - Class in net.imagej.server.external

Command that evaluates arbitrary scripts.

ScriptEval() - Constructor for class net.imagej.server.external.ScriptEval

ScriptGenerator - Class in net.imagej.omero

Generates Python stubs for running ImageJ Modules as OMERO scripts.

ScriptGenerator() - Constructor for class net.imagej.omero.ScriptGenerator

ScriptGenerator(Context) - Constructor for class net.imagej.omero.ScriptGenerator

ScriptRunner - Class in net.imagej.omero

Executes ImageJ Modules as OMERO scripts.

ScriptRunner() - Constructor for class net.imagej.omero.ScriptRunner

ScriptRunner(Context) - Constructor for class net.imagej.omero.ScriptRunner

scrolledText(int, int, String, DocumentListener, Container) - Static method in class net.imagej.ui.swing.updater.SwingTools

scrolledText(int, int, Iterable<String>, DocumentListener, Container) - Static method in class net.imagej.ui.swing.updater.SwingTools

scrollpane - Variable in class net.imagej.ui.swing.updater.SitesDialog

scrollPane(Component, int, int, Container) - Static method in class net.imagej.ui.swing.updater.SwingTools

search(String, boolean) - Method in class net.imagej.ops.search.OpSearcher

SearchBarHacker - Class in net.imagej.legacy.search

Hacks the ImageJ search bar into place.

SearchBarHacker(Context) - Constructor for class net.imagej.legacy.search.SearchBarHacker

SearchOptions - Class in net.imagej.legacy.search

Options relevant to the ImageJ search bar.

SearchOptions() - Constructor for class net.imagej.legacy.search.SearchOptions

searchPanel - Variable in class net.imagej.ui.swing.updater.UpdaterFrame

searchTerm - Variable in class net.imagej.ui.swing.updater.UpdaterFrame

sec(O, I) - Method in class net.imagej.ops.math.MathNamespace

Sec() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Sec

sech(O, I) - Method in class net.imagej.ops.math.MathNamespace

Sech() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Sech

secondMoment(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

secondMoment(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

secondMoment(IterableRegion) - Method in class net.imagej.ops.geom.GeomNamespace

SegmentNamespace - Class in net.imagej.ops.segment

The segment namespace contains segmentation operations.

SegmentNamespace() - Constructor for class net.imagej.ops.segment.SegmentNamespace

selectedIndices() - Method in class net.imagej.display.OverlayInfoList

SelectedManagerOverlayProperties - Class in net.imagej.plugins.commands.overlay

A plugin to change the properties (e.g., line color, line width) of a set of overlays selected in the Overlay Manager.

SelectedManagerOverlayProperties() - Constructor for class net.imagej.plugins.commands.overlay.SelectedManagerOverlayProperties

selectedOverlays() - Method in class net.imagej.display.OverlayInfoList

selectEnd() - Method in class net.imagej.ui.swing.updater.ConflictDialog

selectionChanged(FigureSelectionEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas

Responds to the JHotDraw figure selection event by selecting and deselecting views whose state has changed.

SelectionSpecify - Class in net.imagej.plugins.commands.overlay

Adds a user specified Overlay to an ImageDisplay.

SelectionSpecify() - Constructor for class net.imagej.plugins.commands.overlay.SelectionSpecify

selectionTool - Variable in class net.imagej.ui.swing.overlay.ToolDelegator

SelectOverlays - Class in net.imagej.plugins.commands.display

Selects all of the overlays linked to the given display.

SelectOverlays() - Constructor for class net.imagej.plugins.commands.display.SelectOverlays

SelectView - Class in net.imagej.plugins.commands.display

Selects an overlay that encompasses the current view.

SelectView() - Constructor for class net.imagej.plugins.commands.display.SelectView

SelectWindow - Class in net.imagej.display

Activates the chosen display.

SelectWindow() - Constructor for class net.imagej.display.SelectWindow

semiAxisLength(int) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

semiAxisLength(int) - Method in interface net.imagej.omero.roi.ellipse.OMEROEllipse

sendArguments(String[]) - Method in class net.imagej.legacy.SingleInstance

ServerArgument - Class in net.imagej.server.console

Handles the --server argument to signal that an ImageJ Server should be started immediately when ImageJ launches.

ServerArgument() - Constructor for class net.imagej.server.console.ServerArgument

session(OMEROLocation) - Method in class net.imagej.omero.DefaultOMEROService

session() - Method in class net.imagej.omero.DefaultOMEROService

session(OMEROLocation) - Method in interface net.imagej.omero.OMEROService

Returns an OMEROSession using the given OMEROLocation.

session() - Method in interface net.imagej.omero.OMEROService

Returns the OMEROSession related to the running thread.

set(String, Double) - Method in class net.imagej.axis.VariableAxis

Sets the specified value to a variable of the given name.

set(int, Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

Sets the value at the given index.

set(int, int, Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

Sets the value at the given row column.

set(String, int, Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

Sets the value at the given row column.

set(int, Column<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

Returns null, since the previous column needs to be overwritten with the new column.

set(int, ResultsTable) - Method in class net.imagej.legacy.convert.TableListWrapper

set(long, double, double, double, double, double, double, double, double) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

set(long, double, double, double) - Method in interface net.imagej.mesh.Vertices

Overwrites the position of a vertex, sets normal and texture coordinates to 0

set(long, double, double, double, double, double, double, double, double) - Method in interface net.imagej.mesh.Vertices

Overwrites a vertex's position, normal and texture coordinates.

set(int, Table<?, ?>) - Method in class net.imagej.omero.LazyTableList

set(BigComplex) - Method in class net.imagej.types.BigComplex

Sets the real and imaginary components of this BigComplex to match those of another.

set(long, long) - Method in class net.imagej.types.BigComplex

Sets the real and imaginary components of this BigComplex to given long values.

set(double, double) - Method in class net.imagej.types.BigComplex

Sets the real and imaginary components of this BigComplex to given double values.

set(BigInteger, BigInteger) - Method in class net.imagej.types.BigComplex

Sets the real and imaginary components of this BigComplex to given BigInteger values.

set(BigDecimal, BigDecimal) - Method in class net.imagej.types.BigComplex

Sets the real and imaginary components of this BigComplex to given BigDecimal values.

set(String, String) - Method in class net.imagej.types.BigComplex

Sets the real and imaginary components of this BigComplex to given String values.

set(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType

set(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType

set(double) - Method in class net.imagej.types.PreciseFixedFloatType

set(long) - Method in class net.imagej.types.PreciseFixedFloatType

set(BigInteger) - Method in class net.imagej.types.PreciseFixedFloatType

set(BigDecimal) - Method in class net.imagej.types.PreciseFixedFloatType

set(long) - Method in class net.imagej.types.UnboundedIntegerType

set(BigInteger) - Method in class net.imagej.types.UnboundedIntegerType

set(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType

set(AttributeKey<T>, T) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure

Sets an attribute of the figure.

set(WidgetModel) - Method in class net.imagej.ui.swing.widget.SwingColorTableWidget

set(WidgetModel) - Method in class net.imagej.ui.swing.widget.SwingDimSelectionWidget

set(WidgetModel) - Method in class net.imagej.ui.swing.widget.SwingHistogramWidget

set(UpdaterUserInterface) - Static method in class net.imagej.updater.util.UpdaterUserInterface

setA(double) - Method in class net.imagej.axis.Variable1Axis

setAction(FilesCollection, FileObject) - Method in class net.imagej.updater.action.InstallOrUpdate

setAction(FilesCollection, FileObject) - Method in class net.imagej.updater.action.KeepAsIs

setAction(FilesCollection, FileObject) - Method in class net.imagej.updater.action.Remove

setAction(FilesCollection, FileObject) - Method in class net.imagej.updater.action.Uninstall

setAction(FilesCollection, FileObject) - Method in class net.imagej.updater.action.Upload

setAction(FilesCollection, FileObject.Action) - Method in class net.imagej.updater.FileObject

setAction(FilesCollection, FileObject) - Method in interface net.imagej.updater.GroupAction

setActionMap(ActionMap) - Method in interface net.imagej.ui.swing.overlay.JHotDrawTool

setActionMap(ActionMap) - Method in class net.imagej.ui.swing.overlay.ToolDelegator

setActive(boolean) - Static method in class net.imagej.patcher.PerformanceProfiler

Start or stop profiling This method initializes the profiling class loader if necessary.

setActive(boolean) - Method in class net.imagej.updater.UpdateSite

setActiveAxis(AxisType) - Method in class net.imagej.display.DefaultImageDisplay

setActiveAxis(AxisType) - Method in interface net.imagej.display.ImageDisplay

Sets the axis currently designated as active.

SetActiveAxis - Class in net.imagej.plugins.commands.axispos

Changes the axis to move along to user specified value.

SetActiveAxis() - Constructor for class net.imagej.plugins.commands.axispos.SetActiveAxis

setActiveImage(String) - Static method in class net.imagej.legacy.Macros

setActiveModule(Module) - Static method in class net.imagej.legacy.Macros

setAddToRoiMgr(boolean) - Method in class net.imagej.options.OptionsPointTool

setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.AbsDataValues

setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.AddNoiseToDataValues

setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues

setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.EquationDataValues

setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.ExpDataValues

setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.InvertDataValues

setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.LogDataValues

setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.ReciprocalDataValues

setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.SquareDataValues

setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.SquareRootDataValues

setAlpha(int) - Method in class net.imagej.options.OptionsOverlay

setAlpha(int) - Method in class net.imagej.overlay.AbstractOverlay

setAlpha(int) - Method in interface net.imagej.overlay.Overlay

setAlpha(int) - Method in class net.imagej.overlay.OverlaySettings

setAlpha(double) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionAlphaTrimmedMean

setAlpha(int) - Method in class net.imagej.plugins.commands.overlay.ConvertToMask

setAngle(double) - Method in class net.imagej.plugins.commands.imglib.RotateImageXY

Sets the angle of counterclockwise rotation to apply.

setAnimationService(AnimationService) - Method in class net.imagej.plugins.commands.animation.AnimationOptions

setAntialiasedToolIcons(boolean) - Method in class net.imagej.options.OptionsAppearance

setAntialiasing(boolean) - Method in class net.imagej.render.DummyTextRenderer

setAntialiasing(boolean) - Method in interface net.imagej.render.TextRenderer

setAntialiasing(boolean) - Method in class net.imagej.ui.awt.AWTTextRenderer

setApproved(boolean) - Method in class net.imagej.updater.URLChange

setArgs(Object[]) - Method in class net.imagej.ops.OpCandidate

setArrowColor(ColorRGB) - Method in class net.imagej.options.OptionsArrowTool

setArrowDoubleHeaded(boolean) - Method in class net.imagej.options.OptionsArrowTool

setArrowOutline(boolean) - Method in class net.imagej.options.OptionsArrowTool

setArrowSize(int) - Method in class net.imagej.options.OptionsArrowTool

setArrowStyle(String) - Method in class net.imagej.options.OptionsArrowTool

setArrowWidth(int) - Method in class net.imagej.options.OptionsArrowTool

setAttribute(AttributesImpl, String, long) - Method in class net.imagej.updater.XMLFileWriter

setAttribute(AttributesImpl, String, String) - Method in class net.imagej.updater.XMLFileWriter

setAttributeEnabled(AttributeKey, boolean) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure

setAttributes(Map<AttributeKey, Object>) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure

setAutoClose(boolean) - Method in class net.imagej.options.OptionsProfilePlot

setAutoMeasure(boolean) - Method in class net.imagej.options.OptionsPointTool

setAutoNextSlice(boolean) - Method in class net.imagej.options.OptionsPointTool

setAxes(CalibratedAxis[]) - Method in interface net.imagej.Dataset

setAxes(CalibratedAxis[]) - Method in class net.imagej.DefaultDataset

setAxis(AxisType) - Method in class net.imagej.animation.Animation

setAxis(CalibratedAxis, int) - Method in class net.imagej.DefaultDataset

setAxis(CalibratedAxis, int) - Method in class net.imagej.display.DefaultImageDisplay

setAxis(AxisType) - Method in class net.imagej.plugins.commands.animation.AnimationOptions

setAxis(AxisType) - Method in class net.imagej.plugins.commands.axispos.SetActiveAxis

setAxis(AxisType) - Method in class net.imagej.plugins.commands.restructure.AddAxis

setAxis(AxisType) - Method in class net.imagej.plugins.commands.restructure.AddData

setAxis(AxisType) - Method in class net.imagej.plugins.commands.restructure.DeleteAxis

setAxis(AxisType) - Method in class net.imagej.plugins.commands.restructure.FlipAxis

setAxis(int) - Method in class net.imagej.plugins.commands.restructure.ReorderAxis

Sets the axis to be change by referring to its position.

setAxis(A, int) - Method in class net.imagej.space.AbstractAnnotatedSpace

setAxis(A, int) - Method in interface net.imagej.space.AnnotatedSpace

Sets the dimensional axis associated with the given dimension.

setAxis(A, int) - Method in class net.imagej.space.CombinedSpace

setAxis() - Method in class net.imagej.ui.swing.widget.SwingDimSelectionWidget

Sets the axis which will be used by this dimension selection dialog.

setAxisName(String) - Method in class net.imagej.plugins.commands.restructure.DeleteData

SetAxisPosition - Class in net.imagej.plugins.commands.axispos

Sets the position of the current axis to a user-specified value.

SetAxisPosition() - Constructor for class net.imagej.plugins.commands.axispos.SetAxisPosition

setAxisRange(AxisType, String, boolean) - Method in class net.imagej.plugins.commands.imglib.DuplicateImage

Sets the range of values to copy from the input display for the given axis.

setAxisSize(long) - Method in class net.imagej.plugins.commands.restructure.AddAxis

setAxisType(int, AxisType) - Method in class net.imagej.plugins.commands.restructure.EditAxes

setB(double) - Method in class net.imagej.axis.Variable2Axis

setBackAndForth(boolean) - Method in class net.imagej.animation.Animation

setBackAndForth(boolean) - Method in class net.imagej.plugins.commands.animation.AnimationOptions

setBgValues(ChannelCollection) - Method in class net.imagej.options.OptionsChannels

setBigInteger(BigInteger) - Method in class net.imagej.types.UnboundedIntegerType

setBlackCanvas(boolean) - Method in class net.imagej.options.OptionsAppearance

setBoundaryType(TextData, String) - Method in class net.imagej.omero.legacy.text.OMEROTextUnwrapper

setBoundaryType(S, String) - Method in class net.imagej.omero.roi.AbstractOMERORealMaskUnwrapper

setBoundaryType(EllipseData, String) - Method in class net.imagej.omero.roi.ellipse.OMEROEllipseUnwrapper

setBoundaryType(LineData, String) - Method in class net.imagej.omero.roi.line.OMEROLineUnwrapper

setBoundaryType(MaskData, String) - Method in class net.imagej.omero.roi.mask.OMEROMaskUnwrapper

setBoundaryType(PointData, String) - Method in class net.imagej.omero.roi.point.OMEROPointUnwrapper

setBoundaryType(PolygonData, String) - Method in class net.imagej.omero.roi.polyshape.OMEROPolygonUnwrapper

setBoundaryType(PolylineData, String) - Method in class net.imagej.omero.roi.polyshape.OMEROPolylineUnwrapper

setBoundaryType(RectangleData, String) - Method in class net.imagej.omero.roi.rectangle.OMERORectangleUnwrapper

setBounds(Point2D.Double, Point2D.Double) - Method in class net.imagej.ui.swing.overlay.PointFigure

setBounds(Point2D.Double, Point2D.Double) - Method in class net.imagej.ui.swing.overlay.ThresholdFigure

setBrightness(int) - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast

setC(double) - Method in class net.imagej.axis.Variable3Axis

setCenter(double[]) - Method in class net.imagej.overlay.AngleOverlay

setCenter(double, int) - Method in class net.imagej.overlay.AngleOverlay

setCentered(boolean) - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify

setCenterPoint(double, double) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter.AngleFigure

setCenterU(double) - Method in class net.imagej.plugins.commands.zoom.ZoomSet

setCenterV(double) - Method in class net.imagej.plugins.commands.zoom.ZoomSet

setChangeInput(boolean) - Method in class net.imagej.plugins.commands.binary.Binarize

Sets whether to change input data to contain the output mask.

setChannelMaximum(int, double) - Method in class net.imagej.DefaultDataset

setChannelMaximum(int, double) - Method in interface net.imagej.ImageMetadata

Sets the maximum actual pixel value for the given channel.

setChannelMaximum(int, double) - Method in class net.imagej.ImgPlus

setChannelMinimum(int, double) - Method in class net.imagej.DefaultDataset

setChannelMinimum(int, double) - Method in interface net.imagej.ImageMetadata

Sets the minimum actual pixel value for the given channel.

setChannelMinimum(int, double) - Method in class net.imagej.ImgPlus

setChannelRange(int, double, double) - Method in interface net.imagej.display.DatasetView

Sets the minimum and maximum values of the display range, for the given channel.

setChannelRange(int, double, double) - Method in class net.imagej.display.DefaultDatasetView

setChannelRanges(double, double) - Method in interface net.imagej.display.DatasetView

Sets the minimum and maximum values of the display range, globally for all channels.

setChannelRanges(double, double) - Method in class net.imagej.display.DefaultDatasetView

setChannels(ChannelCollection) - Method in class net.imagej.DrawingTool

setCheckNameDuplicates(boolean) - Method in class net.imagej.legacy.IJ1Helper

Sets WindowManager checkForDuplicateName field.

setChunk(Chunk) - Method in class net.imagej.ops.thread.chunker.AbstractChunker

setChunk(Chunk) - Method in interface net.imagej.ops.thread.chunker.ChunkerOp

Sets the Chunk for which will be multithreaded.

setClearAll(boolean) - Method in class net.imagej.app.Preferences

setCoeff(int, double) - Method in class net.imagej.axis.PolynomialAxis

Sets the ith coefficient of the polynomial.

setCoefficient(int, int) - Method in class net.imagej.ops.features.zernike.helper.Polynom

set the coefficient at a position.

setColocValue(Double) - Method in class net.imagej.ops.coloc.pValue.PValueResult

setColocValuesArray(double[]) - Method in class net.imagej.ops.coloc.pValue.PValueResult

setColor(ChannelCollection) - Method in class net.imagej.plugins.commands.assign.FillDataValues

setColor(ColorRGB) - Method in class net.imagej.plugins.commands.overlay.ConvertToMask

setColorMode(ColorMode) - Method in interface net.imagej.display.DatasetView

setColorMode(ColorMode) - Method in class net.imagej.display.DefaultDatasetView

setColorMode(ColorMode) - Method in class net.imagej.plugins.commands.display.ChannelsTool

setColorTable(ColorTable, int) - Method in class net.imagej.DefaultDataset

setColorTable(ColorTable, int) - Method in interface net.imagej.display.DatasetView

setColorTable(ColorTable, int) - Method in class net.imagej.display.DefaultDatasetView

setColorTable(ColorTable, int) - Method in interface net.imagej.ImageMetadata

Sets the color table at the given position.

setColorTable(ColorTable, int) - Method in class net.imagej.ImgPlus

setColorTable(ColorTable) - Method in class net.imagej.ui.swing.SwingColorBar

Sets the ColorTable displayed by this color bar.

setColumnCount(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

setColumnHeader(int, String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

setColumnWidths() - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel

setCommand(String) - Method in class net.imagej.plugins.uploaders.ssh.SSHFileUploader

setComplexNumber(float, float) - Method in class net.imagej.types.BigComplex

Sets the real and imaginary components of this BigComplex to given float values.

setComplexNumber(double, double) - Method in class net.imagej.types.BigComplex

Sets the real and imaginary components of this BigComplex to given double values.

setComplexNumber(BigDecimal, BigDecimal) - Method in class net.imagej.types.BigComplex

Sets the real and imaginary components of this BigComplex to given BigDecimal values.

setComplexNumber(String, String) - Method in class net.imagej.types.BigComplex

Sets the real and imaginary components of this BigComplex to given String values.

setComplexNumber(float, float) - Method in class net.imagej.types.PreciseFixedComplexFloatType

setComplexNumber(double, double) - Method in class net.imagej.types.PreciseFixedComplexFloatType

setComplexNumber(float, float) - Method in class net.imagej.types.PreciseFixedFloatType

setComplexNumber(double, double) - Method in class net.imagej.types.PreciseFixedFloatType

setComplexNumber(float, float) - Method in class net.imagej.types.UnboundedIntegerType

setComplexNumber(double, double) - Method in class net.imagej.types.UnboundedIntegerType

setComposite(boolean) - Method in interface net.imagej.display.DatasetView

setComposite(boolean) - Method in class net.imagej.display.DefaultDatasetView

setCompositeChannelCount(int) - Method in class net.imagej.DefaultDataset

setCompositeChannelCount(int) - Method in interface net.imagej.ImageMetadata

Sets the number of channels intended to be displayed together.

setCompositeChannelCount(int) - Method in class net.imagej.ImgPlus

setConnectedType(ConnectedType) - Method in class net.imagej.plugins.commands.binary.AbstractMorphOpsCommand

setConnectivity(FloodFillTool.Connectivity) - Method in class net.imagej.plugins.tools.FloodFillTool

Specify whether this flood fill operation should be 4 or 8 connected.

setConstrainXY(Boolean) - Method in class net.imagej.plugins.commands.imglib.ResizeImage

Sets whether command will constrain XY aspect ratio.

setContext(Context) - Method in class net.imagej.AbstractData

setContrast(int) - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast

setCopyColumnHeaders(boolean) - Method in class net.imagej.options.OptionsInputOutput

setCopyRowNumbers(boolean) - Method in class net.imagej.options.OptionsInputOutput

setCornerDiameter(int) - Method in class net.imagej.options.OptionsRoundedRectangleTool

setCount(int, int) - Method in class net.imagej.ui.swing.updater.ProgressDialog

setCount(int, int) - Method in class net.imagej.updater.FilesUploader.VerifyTimestamp

setCount(int, int) - Method in class net.imagej.updater.util.AbstractProgressable

setCount(int, int) - Method in interface net.imagej.updater.util.Progress

setCount(int, int) - Method in class net.imagej.updater.util.StderrProgress

setCreationTool(JHotDrawTool) - Method in class net.imagej.ui.swing.overlay.ToolDelegator

setCredentials(OMEROLocation) - Method in class net.imagej.omero.OMEROFormat.Metadata

setCursor(MouseCursor) - Method in class net.imagej.display.DefaultImageCanvas

setCursor(MouseCursor) - Method in interface net.imagej.display.ImageCanvas

Sets the mouse to the given MouseCursor type.

setCursor(Point) - Method in class net.imagej.ui.swing.updater.FileDetails

setD(double) - Method in class net.imagej.axis.Variable4Axis

setDataMinMax(double, double) - Method in class net.imagej.widget.HistogramBundle

Sets the min/max values of the actual range.

setDataset(Dataset) - Method in class net.imagej.plugins.commands.assign.FillDataValues

setDataset(Dataset) - Method in class net.imagej.plugins.commands.imglib.Binner

Sets the Dataset that the bin operation will be run upon.

setDataset(Dataset) - Method in class net.imagej.plugins.commands.imglib.ResizeImage

Sets the Dataset that the resize operation will be run upon.

setDataset(Dataset) - Method in class net.imagej.plugins.commands.imglib.ResliceImage

Sets the Dataset that the reslice operation will be run upon.

setDataset(Dataset) - Method in class net.imagej.plugins.commands.imglib.RotateImageXY

Sets the Dataset that the rotate operation will be run upon.

setDataset(Dataset) - Method in class net.imagej.plugins.commands.imglib.TranslateImage

Sets the Dataset that the translate operation will be run upon.

setDataset(Dataset) - Method in class net.imagej.plugins.commands.restructure.AddAxis

setDataset(Dataset) - Method in class net.imagej.plugins.commands.restructure.AddData

setDataset(Dataset) - Method in class net.imagej.plugins.commands.restructure.DeleteAxis

setDataset(Dataset) - Method in class net.imagej.plugins.commands.restructure.DeleteData

setDataset(Dataset) - Method in class net.imagej.plugins.commands.restructure.EditAxes

setDataset(Dataset) - Method in class net.imagej.plugins.commands.restructure.FlipAxis

setDataset(Dataset) - Method in class net.imagej.plugins.commands.restructure.ReorderData

setDatasetView(DatasetView) - Method in class net.imagej.plugins.commands.display.AutoContrast

setDataType(DataType<?>) - Method in class net.imagej.plugins.commands.io.NewImage

SetDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign

Fills an output image with a user specified constant value.

SetDataValues() - Constructor for class net.imagej.plugins.commands.assign.SetDataValues

setDebugMode(boolean) - Method in class net.imagej.legacy.IJ1Helper

Enables or disables ImageJ 1.x' debug mode.

setDebugMode(boolean) - Method in class net.imagej.options.OptionsMisc

setDefault() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast

setDefaultBehavior(boolean) - Method in class net.imagej.plugins.commands.imglib.DuplicateImage

Specifies whether to use default behavior or special behavior.

setDefaultDirectory(File) - Method in class net.imagej.legacy.IJ1Helper

Sets OpenDialog's default directory

setDefaultHeadings() - Method in class net.imagej.legacy.convert.TableWrapper

setDefaultString(int, String) - Method in class net.imagej.patcher.HeadlessGenericDialog

setDefaultThresholdMethod() - Method in class net.imagej.plugins.commands.binary.Binarize

Sets the threshold method to the default algorithm.

setDelta(int, double) - Method in class net.imagej.plugins.commands.imglib.TranslateImage

Sets the translation delta for a given axis to a given value.

setDescription(String) - Method in class net.imagej.updater.UpdateSite

setDest(String, int, SCIFIOConfig) - Method in class net.imagej.omero.OMEROFormat.Writer

setDimension(int, long) - Method in class net.imagej.plugins.commands.imglib.ResizeImage

Sets the given dimension of the resized image.

setDimension(AxisType, long) - Method in class net.imagej.plugins.commands.io.NewImage

setDimensionality(int) - Method in class net.imagej.plugins.commands.assign.noisereduce.RadialNeighborhoodSpecifier

setDimensionality(int) - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier

setDimensions(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

setDirty(boolean) - Method in interface net.imagej.Dataset

TODO

setDirty(boolean) - Method in class net.imagej.DefaultDataset

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.animation.AnimationOptions

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.animation.StartAnimation

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.animation.StopAnimation

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.app.CopyToSystem

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.AbsDataValues

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.AddNoiseToDataValues

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.EquationDataValues

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.ExpDataValues

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.InvertDataValues

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.LogDataValues

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.MathCommand

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.ReciprocalDataValues

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.SquareDataValues

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.SquareRootDataValues

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.axispos.AxisPositionBackward

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.axispos.AxisPositionForward

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.axispos.SetActiveAxis

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.correlate.AbstractShadows

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.correlate.ShadowsDemo

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.correlate.SharpenDataValues

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.correlate.SmoothDataValues

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.DeselectOverlays

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.Flatten

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.HistogramPlot

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.RemoveOverlayReferences

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.SelectOverlays

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.SelectView

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.ShowLUT

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.imglib.CropImage

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.imglib.NanBackground

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.imglib.SaltAndPepper

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.neigh.FindEdges

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.restructure.ReorderAxis

Sets the ImageDisplay to change.

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.rotate.FlipHorizontally

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.rotate.FlipVertically

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.rotate.Rotate90DegreesLeft

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.rotate.Rotate90DegreesRight

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.zoom.Zoom100Percent

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.zoom.ZoomIn

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.zoom.ZoomOriginalScale

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.zoom.ZoomOut

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.zoom.ZoomSet

setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.zoom.ZoomToSelection

setDisplayFractionalScales(boolean) - Method in class net.imagej.options.OptionsAppearance

setDistanceToFaceInFront(double) - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex

setDivByZeroVal(String) - Method in class net.imagej.options.OptionsMisc

setDotSize(int) - Method in class net.imagej.plugins.tools.SprayCanTool

setDouble(T, double) - Method in interface net.imagej.types.DataType

Sets a given value to a given double.

setDouble(ComplexDoubleType, double) - Method in class net.imagej.types.DataType128BitSignedComplexFloat

setDouble(Unsigned12BitType, double) - Method in class net.imagej.types.DataType12BitUnsignedInteger

setDouble(ShortType, double) - Method in class net.imagej.types.DataType16BitSignedInteger

setDouble(UnsignedShortType, double) - Method in class net.imagej.types.DataType16BitUnsignedInteger

setDouble(BitType, double) - Method in class net.imagej.types.DataType1BitUnsignedInteger

setDouble(FloatType, double) - Method in class net.imagej.types.DataType32BitSignedFloat

setDouble(IntType, double) - Method in class net.imagej.types.DataType32BitSignedInteger

setDouble(UnsignedIntType, double) - Method in class net.imagej.types.DataType32BitUnsignedInteger

setDouble(ComplexFloatType, double) - Method in class net.imagej.types.DataType64BitSignedComplexFloat

setDouble(DoubleType, double) - Method in class net.imagej.types.DataType64BitSignedFloat

setDouble(LongType, double) - Method in class net.imagej.types.DataType64BitSignedInteger

setDouble(ByteType, double) - Method in class net.imagej.types.DataType8BitSignedInteger

setDouble(UnsignedByteType, double) - Method in class net.imagej.types.DataType8BitUnsignedInteger

setDouble(NativeBoolType, double) - Method in class net.imagej.types.DataTypeBoolean

setDouble(BigComplex, double) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat

setDouble(PreciseFixedFloatType, double) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat

setDouble(UnboundedIntegerType, double) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger

setDoubleOutput(boolean) - Method in class net.imagej.plugins.commands.calculator.ImageCalculator

Sets whether image calculation will create double backed output.

setDrawGridLines(boolean) - Method in class net.imagej.options.OptionsProfilePlot

setEasyMode(boolean) - Method in class net.imagej.ui.swing.updater.UpdaterFrame

setEchoChar(char) - Method in class imagej.patcher.HeadlessGenericDialog

Deprecated.

setEchoChar(char) - Method in class net.imagej.patcher.HeadlessGenericDialog

setEditableForDevelopers() - Method in class net.imagej.ui.swing.updater.FileDetails

setEnabled(boolean) - Static method in class net.imagej.matlab.ImageJMATLABPrefService

Sets whether or not this PrefService is enabled.

setEndArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.options.OptionsOverlay

setEndArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.overlay.OverlaySettings

setEndingWavelength(int) - Method in class net.imagej.plugins.commands.display.SpectralComposite

setEndPoint1(double, double) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter.AngleFigure

setEndPoint2(double, double) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter.AngleFigure

setEnvironment(OpEnvironment) - Method in class net.imagej.ops.AbstractNamespace

setEnvironment(OpEnvironment) - Method in class net.imagej.ops.AbstractOp

setEnvironment(OpEnvironment) - Method in interface net.imagej.ops.Environmental

Sets the op execution environment.

setEquation(String) - Method in class net.imagej.plugins.commands.assign.EquationDataValues

setExitWhenQuitting(boolean) - Method in class net.imagej.options.OptionsMisc

setExtent(double, int) - Method in class net.imagej.overlay.RectangleOverlay

setf(long, float, float, float, float, float, float, float, float) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

setf(long, float, float, float, float, float, float, float, float) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices

setf(long, float, float, float, float, float, float, float, float) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices

setf(long, float, float, float, float, float, float, float, float) - Method in interface net.imagej.mesh.Vertices

Overwrites a vertex's position, normal and texture coordinates.

setf(long, float, float, float) - Method in interface net.imagej.mesh.Vertices

Overwrites the position of a vertex, sets normal and texture coordinates to 0

setFactor(int, int) - Method in class net.imagej.plugins.commands.imglib.Binner

Sets the reduction factor for a given dimension.

setFFTInput(RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.AbstractFFTFilterC

setFFTKernel(RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.AbstractFFTFilterC

setFFTSizeOp(UnaryFunctionOp<Dimensions, long[][]>) - Method in class net.imagej.ops.filter.pad.PadInputFFT

setFFTSizeOp(UnaryFunctionOp<Dimensions, long[][]>) - Method in class net.imagej.ops.filter.pad.PadShiftKernel

setFgValues(ChannelCollection) - Method in class net.imagej.options.OptionsChannels

setFiles(Iterable<FileObject>) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel

setFiles(FilesCollection) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel

setFiles(Iterable<FileObject>) - Method in class net.imagej.ui.swing.updater.FileTable

setFillColor(Color) - Method in class net.imagej.omero.legacy.LazyOverlay

setFillColor(ColorRGB) - Method in class net.imagej.options.OptionsOverlay

setFillColor(ColorRGB) - Method in class net.imagej.options.OptionsRoundedRectangleTool

setFillColor(ColorRGB) - Method in class net.imagej.overlay.AbstractOverlay

setFillColor(ColorRGB) - Method in interface net.imagej.overlay.Overlay

setFillColor(ColorRGB) - Method in class net.imagej.overlay.OverlaySettings

setFillColor(ColorRGB) - Method in class net.imagej.ui.swing.overlay.PointFigure

setFillMaskBackground(boolean) - Method in class net.imagej.plugins.commands.binary.Binarize

Sets whether to fill background pixels of binary mask or not to the given specified value.

setFillMaskForeground(boolean) - Method in class net.imagej.plugins.commands.binary.Binarize

Sets whether to fill foreground pixels of binary mask or not to the given specified value.

setFillOpacity(int) - Method in class net.imagej.options.OptionsRoundedRectangleTool

setFillType(String) - Method in class net.imagej.plugins.commands.io.NewImage

setFirst(long) - Method in class net.imagej.animation.Animation

setFirst(UnaryComputerOp<A, B>) - Method in class net.imagej.ops.join.DefaultJoin2Computers

setFirst(UnaryInplaceOp<A, A>) - Method in class net.imagej.ops.join.DefaultJoin2Inplaces

setFirst(UnaryComputerOp<A, B>) - Method in class net.imagej.ops.join.DefaultJoinComputerAndInplace

setFirst(UnaryInplaceOp<A, A>) - Method in class net.imagej.ops.join.DefaultJoinInplaceAndComputer

setFirst(OP1) - Method in interface net.imagej.ops.join.Join2Ops

setFirst(long) - Method in class net.imagej.plugins.commands.animation.AnimationOptions

setFirstValidAction(FilesCollection, FileObject.Action...) - Method in class net.imagej.updater.FileObject

setFont(String) - Method in class net.imagej.options.OptionsFont

setFontFamily(TextRenderer.FontFamily) - Method in class net.imagej.DrawingTool

Sets the family name of the drawing font.

setFontFamily(TextRenderer.FontFamily) - Method in class net.imagej.render.DummyTextRenderer

setFontFamily(TextRenderer.FontFamily) - Method in interface net.imagej.render.TextRenderer

setFontFamily(TextRenderer.FontFamily) - Method in class net.imagej.ui.awt.AWTTextRenderer

setFontSize(int) - Method in class net.imagej.DrawingTool

Sets the size of the drawing font.

setFontSize(int) - Method in class net.imagej.options.OptionsFont

setFontSize(int) - Method in class net.imagej.render.DummyTextRenderer

setFontSize(int) - Method in interface net.imagej.render.TextRenderer

setFontSize(int) - Method in class net.imagej.ui.awt.AWTTextRenderer

setFontSmooth(boolean) - Method in class net.imagej.options.OptionsFont

setFontStyle(TextRenderer.FontStyle) - Method in class net.imagej.DrawingTool

Sets the style of the drawing font.

setFontStyle(String) - Method in class net.imagej.options.OptionsFont

setFontStyle(TextRenderer.FontStyle) - Method in class net.imagej.render.DummyTextRenderer

setFontStyle(TextRenderer.FontStyle) - Method in interface net.imagej.render.TextRenderer

setFontStyle(TextRenderer.FontStyle) - Method in class net.imagej.ui.awt.AWTTextRenderer

setForceOverwrite(boolean) - Method in class net.imagej.omero.ScriptGenerator

Toggles whether to force overwrite any existing ImageJ scripts.

setFPS(double) - Method in class net.imagej.animation.Animation

setFPS(double) - Method in class net.imagej.plugins.commands.animation.AnimationOptions

setFullZoomImages(boolean) - Method in class net.imagej.options.OptionsAppearance

setGeneralPath(GeneralPath) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure

setGenerateDebugInfo(boolean) - Method in class net.imagej.options.OptionsCompiler

setHalfTrimWidth(int) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionTrimmedMean

setHasChanges(boolean) - Method in class net.imagej.widget.HistogramBundle

Sets the changes flag.

setHeader(String) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

setHeading(int, String) - Method in class net.imagej.legacy.convert.TableWrapper

setHeadlessOnly(boolean) - Method in class net.imagej.omero.ScriptGenerator

Toggles whether to generate only headless-friendly modules.

setHeight(int) - Method in class net.imagej.options.OptionsProfilePlot

setHeight(long) - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify

setHelpLabel(String) - Method in class imagej.patcher.HeadlessGenericDialog

Deprecated.

setHelpLabel(String) - Method in class net.imagej.patcher.HeadlessGenericDialog

setHideProcessStackDialog(boolean) - Method in class net.imagej.options.OptionsMisc

setHistogram(int, Histogram1d<?>) - Method in class net.imagej.widget.HistogramBundle

Sets the histogram of interest for this HistogramBundle.

setHost(String) - Method in class net.imagej.updater.UpdateSite

setIJ1Helper(IJ1Helper) - Method in class net.imagej.legacy.LegacyService

This is not part of the public API.

setImag(long) - Method in class net.imagej.types.BigComplex

Sets the imaginary component of this BigComplex to given long value.

setImag(double) - Method in class net.imagej.types.BigComplex

Sets the imaginary component of this BigComplex to given double value.

setImag(BigInteger) - Method in class net.imagej.types.BigComplex

Sets the imaginary component of this BigComplex to given BigInteger value.

setImag(BigDecimal) - Method in class net.imagej.types.BigComplex

Sets the imaginary component of this BigComplex to given BigDecimal value.

setImag(String) - Method in class net.imagej.types.BigComplex

Sets the imaginary component of this BigComplex to given String value.

setImag(double) - Method in class net.imagej.types.PreciseFixedComplexFloatType

setImag(BigDecimal) - Method in class net.imagej.types.PreciseFixedComplexFloatType

setImag(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType

setImage(Image) - Method in class net.imagej.omero.OMEROFormat.Metadata

setImageDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.CaptureImage

setImageDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.interactive.OrthogonalViews

setImageDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.interactive.SynchronizeWindows

setImageDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.interactive.Threshold

setImageDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.RemoveOverlay

setImageDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.misc.Benchmark

setImageDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.overlay.AddImage

setImageDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.overlay.FromOverlayManager

setImageDisplayService(ImageDisplayService) - Method in class net.imagej.plugins.commands.zoom.ZoomSet

setImageID(long) - Method in class net.imagej.omero.OMEROFormat.Metadata

setImaginary(float) - Method in class net.imagej.types.BigComplex

Sets the imaginary component of this BigComplex to given float value.

setImaginary(double) - Method in class net.imagej.types.BigComplex

Sets the imaginary component of this BigComplex to given double value.

setImaginary(float) - Method in class net.imagej.types.PreciseFixedComplexFloatType

setImaginary(double) - Method in class net.imagej.types.PreciseFixedComplexFloatType

setImaginary(float) - Method in class net.imagej.types.PreciseFixedFloatType

setImaginary(double) - Method in class net.imagej.types.PreciseFixedFloatType

setImaginary(float) - Method in class net.imagej.types.UnboundedIntegerType

setImaginary(double) - Method in class net.imagej.types.UnboundedIntegerType

setImgPlus(ImgPlus<? extends RealType<?>>) - Method in interface net.imagej.Dataset

TODO

setImgPlus(ImgPlus<? extends RealType<?>>) - Method in class net.imagej.DefaultDataset

setIndex(long) - Method in class net.imagej.Position

Sets the Position from a given long index.

setInitialScale(double) - Method in class net.imagej.display.DefaultImageCanvas

setInitialScale(double) - Method in interface net.imagej.display.Zoomable

Sets the scale to use when reverting after zooming.

setInput(I1) - Method in interface net.imagej.ops.special.BinaryInput

setInput(I) - Method in class net.imagej.ops.special.computer.AbstractUnaryComputerOp

setInput(I) - Method in class net.imagej.ops.special.function.AbstractUnaryFunctionOp

setInput(I) - Method in class net.imagej.ops.special.hybrid.AbstractUnaryHybridC

setInput(A) - Method in class net.imagej.ops.special.inplace.AbstractUnaryInplaceOp

setInput(I) - Method in interface net.imagej.ops.special.UnaryInput

setInput(Dataset) - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin

setInput(ImageDisplay) - Method in class net.imagej.plugins.commands.overlay.ConvertToMask

setInput1(I1) - Method in interface net.imagej.ops.special.BinaryInput

setInput1(I1) - Method in class net.imagej.ops.special.computer.AbstractBinaryComputerOp

setInput1(I1) - Method in class net.imagej.ops.special.function.AbstractBinaryFunctionOp

setInput1(I1) - Method in class net.imagej.ops.special.hybrid.AbstractBinaryHybridC

setInput1(A) - Method in class net.imagej.ops.special.inplace.AbstractBinaryInplace1Op

setInput1(Dataset) - Method in class net.imagej.plugins.commands.calculator.ImageCalculator

Sets the Dataset that will be input 1 for this image calculation.

setInput2(I2) - Method in interface net.imagej.ops.special.BinaryInput

setInput2(I2) - Method in class net.imagej.ops.special.computer.AbstractBinaryComputerOp

setInput2(I2) - Method in class net.imagej.ops.special.function.AbstractBinaryFunctionOp

setInput2(I2) - Method in class net.imagej.ops.special.hybrid.AbstractBinaryHybridC

setInput2(I) - Method in class net.imagej.ops.special.inplace.AbstractBinaryInplace1Op

setInput2(Dataset) - Method in class net.imagej.plugins.commands.calculator.ImageCalculator

Sets the Dataset that will be input 2 for this image calculation.

setInputData(Dataset) - Method in class net.imagej.plugins.commands.binary.Binarize

Sets the reference input data.

setInputDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.imglib.DuplicateImage

Sets the the input image to be sampled.

setInputMap(InputMap) - Method in interface net.imagej.ui.swing.overlay.JHotDrawTool

setInputMap(InputMap) - Method in class net.imagej.ui.swing.overlay.ToolDelegator

setInputMask(Dataset) - Method in class net.imagej.plugins.commands.binary.Binarize

Sets the preexisting mask (if any).

setInsets(int, int, int) - Method in class imagej.patcher.HeadlessGenericDialog

Deprecated.

setInsets(int, int, int) - Method in class net.imagej.patcher.HeadlessGenericDialog

setInteger(int) - Method in class net.imagej.types.UnboundedIntegerType

setInteger(long) - Method in class net.imagej.types.UnboundedIntegerType

setInterpLineProf(boolean) - Method in class net.imagej.options.OptionsProfilePlot

setInterpolationMethod(String) - Method in class net.imagej.plugins.commands.imglib.ResizeImage

Sets the interpolation method used to combine pixels.

setInterpolationMethod(String) - Method in class net.imagej.plugins.commands.imglib.ResliceImage

Sets the interpolation method used to combine pixels.

setInterpolationMethod(String) - Method in class net.imagej.plugins.commands.imglib.RotateImageXY

Sets the interpolation method used to combine pixels.

setInterpolationMethod(String) - Method in class net.imagej.plugins.commands.imglib.TranslateImage

Sets the interpolation method used to combine pixels.

setInterpZoomedImages(boolean) - Method in class net.imagej.options.OptionsAppearance

setInvertModeLegacy() - Method in class net.imagej.options.OptionsCompatibility

setInvertModeModern() - Method in class net.imagej.options.OptionsCompatibility

setIsoLevel(double) - Method in class net.imagej.ops.geom.geom3d.mesh.BitTypeVertexInterpolator

setIsoLevel(double) - Method in class net.imagej.ops.geom.geom3d.mesh.DefaultVertexInterpolator

setIsoLevel(double) - Method in interface net.imagej.ops.geom.geom3d.mesh.VertexInterpolator

setItemCount(int, int) - Method in class net.imagej.ui.swing.updater.ProgressDialog

setItemCount(int, int) - Method in class net.imagej.updater.FilesUploader.VerifyTimestamp

setItemCount(int, int) - Method in class net.imagej.updater.util.AbstractProgressable

setItemCount(int, int) - Method in interface net.imagej.updater.util.Progress

setItemCount(int, int) - Method in class net.imagej.updater.util.StderrProgress

setJpegQuality(int) - Method in class net.imagej.options.OptionsInputOutput

setJustification(TextOverlay.Justification) - Method in class net.imagej.overlay.TextOverlay

setJvmArgs(String) - Method in class net.imagej.config.ConfigFileParameters

Sets the value associated with the "jvmargs" key in the launcher configuration file.

setKeepURL(boolean) - Method in class net.imagej.updater.UpdateSite

setKeyDown(int) - Method in class net.imagej.legacy.IJ1Helper

setKeyUp(int) - Method in class net.imagej.legacy.IJ1Helper

setLabel(String, int) - Method in class net.imagej.legacy.convert.TableWrapper

setLabel(String) - Method in class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel

setLabelPoints(boolean) - Method in class net.imagej.options.OptionsPointTool

setLast(long) - Method in class net.imagej.animation.Animation

setLast(long) - Method in class net.imagej.plugins.commands.animation.AnimationOptions

setLastBgColor(ColorRGB) - Method in class net.imagej.options.OptionsChannels

setLastBgColor(ColorRGB, boolean) - Method in class net.imagej.options.OptionsChannels

setLastFgColor(ColorRGB) - Method in class net.imagej.options.OptionsChannels

setLastFgColor(ColorRGB, boolean) - Method in class net.imagej.options.OptionsChannels

setLastModified(long) - Method in class net.imagej.updater.UpdateSite

setLatestNag() - Static method in class net.imagej.updater.UpToDate

Remember that we just nagged the user about an update.

setLatestNag(long) - Static method in class net.imagej.updater.UpToDate

Remember when we last nagged the user about an update.

setLegacyImageJResultsTable() - Method in class net.imagej.legacy.translate.ResultsTableHarmonizer

setLineColor(ColorRGB) - Method in class net.imagej.options.OptionsOverlay

setLineColor(ColorRGB) - Method in class net.imagej.overlay.AbstractOverlay

setLineColor(ColorRGB) - Method in interface net.imagej.overlay.Overlay

Set the color of the outline line of the overlay, if appropriate

setLineColor(ColorRGB) - Method in class net.imagej.overlay.OverlaySettings

setLineColor(ColorRGB) - Method in class net.imagej.ui.swing.overlay.PointFigure

setLineEnd(double[]) - Method in class net.imagej.overlay.LineOverlay

setLineEnd(double, int) - Method in class net.imagej.overlay.LineOverlay

setLineEndArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.overlay.AbstractOverlay

setLineEndArrowStyle(Overlay.ArrowStyle) - Method in interface net.imagej.overlay.Overlay

setLineSlopeIntercept(double, double) - Method in class net.imagej.widget.HistogramBundle

Sets the line equation for the slope line of a histogram.

setLineStart(double[]) - Method in class net.imagej.overlay.LineOverlay

setLineStart(double, int) - Method in class net.imagej.overlay.LineOverlay

setLineStartArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.overlay.AbstractOverlay

setLineStartArrowStyle(Overlay.ArrowStyle) - Method in interface net.imagej.overlay.Overlay

setLineStyle(Overlay.LineStyle) - Method in class net.imagej.options.OptionsOverlay

setLineStyle(Overlay.LineStyle) - Method in class net.imagej.overlay.AbstractOverlay

setLineStyle(Overlay.LineStyle) - Method in interface net.imagej.overlay.Overlay

Set the style of the outline line of the overlay, if appropriate

setLineStyle(Overlay.LineStyle) - Method in class net.imagej.overlay.OverlaySettings

setLineWidth(long) - Method in class net.imagej.DrawingTool

Sets the current drawing line width.

setLineWidth(int) - Method in class net.imagej.options.OptionsLineWidth

setLineWidth(double) - Method in class net.imagej.options.OptionsOverlay

setLineWidth(double) - Method in class net.imagej.overlay.AbstractOverlay

setLineWidth(double) - Method in interface net.imagej.overlay.Overlay

Set the width of the outline line of the overlay, if appropriate

setLineWidth(double) - Method in class net.imagej.overlay.OverlaySettings

setLineWidth(long) - Method in class net.imagej.plugins.tools.AbstractLineTool

Sets the drawing width for lines (in pixels).

setListValues(boolean) - Method in class net.imagej.options.OptionsProfilePlot

setLocalVersion(String, String, long) - Method in class net.imagej.updater.FileObject

setLocation(int, int) - Method in class imagej.patcher.HeadlessGenericDialog

Deprecated.

setLocation(int, int) - Method in class net.imagej.legacy.IJ1Helper

setLocation(int, int) - Method in class net.imagej.legacy.ui.LegacyApplicationFrame

setLocation(int, int) - Method in class net.imagej.patcher.HeadlessGenericDialog

setLong(T, long) - Method in interface net.imagej.types.DataType

Sets a given value to a given long.

setLong(ComplexDoubleType, long) - Method in class net.imagej.types.DataType128BitSignedComplexFloat

setLong(Unsigned12BitType, long) - Method in class net.imagej.types.DataType12BitUnsignedInteger

setLong(ShortType, long) - Method in class net.imagej.types.DataType16BitSignedInteger

setLong(UnsignedShortType, long) - Method in class net.imagej.types.DataType16BitUnsignedInteger

setLong(BitType, long) - Method in class net.imagej.types.DataType1BitUnsignedInteger

setLong(FloatType, long) - Method in class net.imagej.types.DataType32BitSignedFloat

setLong(IntType, long) - Method in class net.imagej.types.DataType32BitSignedInteger

setLong(UnsignedIntType, long) - Method in class net.imagej.types.DataType32BitUnsignedInteger

setLong(ComplexFloatType, long) - Method in class net.imagej.types.DataType64BitSignedComplexFloat

setLong(DoubleType, long) - Method in class net.imagej.types.DataType64BitSignedFloat

setLong(LongType, long) - Method in class net.imagej.types.DataType64BitSignedInteger

setLong(ByteType, long) - Method in class net.imagej.types.DataType8BitSignedInteger

setLong(UnsignedByteType, long) - Method in class net.imagej.types.DataType8BitUnsignedInteger

setLong(NativeBoolType, long) - Method in class net.imagej.types.DataTypeBoolean

setLong(BigComplex, long) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat

setLong(PreciseFixedFloatType, long) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat

setLong(UnboundedIntegerType, long) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger

setLoopCount(int) - Method in class net.imagej.ops.loop.DefaultLoopComputer

setLoopCount(int) - Method in class net.imagej.ops.loop.DefaultLoopInplace

setLoopCount(int) - Method in interface net.imagej.ops.loop.LoopOp

setM(int) - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment

Set repitition m

setMacroOptions(String) - Method in class imagej.patcher.LegacyEnvironment

Deprecated.

Sets the macro options.

setMacroOptions(String) - Method in class net.imagej.patcher.LegacyEnvironment

Sets the macro options.

setMaintainer(String) - Method in class net.imagej.updater.UpdateSite

setMarkWidth(int) - Method in class net.imagej.options.OptionsPointTool

setMaskColor(String) - Method in class net.imagej.plugins.commands.binary.Binarize

Sets the color of the mask pixels.

setMaskPixels(String) - Method in class net.imagej.plugins.commands.binary.Binarize

Sets which pixels are considered part of the mask.

setMaxBin(long) - Method in class net.imagej.widget.HistogramBundle

Sets the bin number of the maximum value.

setMaximum(double) - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast

setMaxMemory(int) - Method in class net.imagej.options.OptionsMemoryAndThreads

Sets the number of megabytes of memory that should be allocated for use by ImageJ.

setMaxThreads(int) - Method in class net.imagej.ops.CustomOpEnvironment

setMaxThreads(int) - Method in class net.imagej.ops.DefaultOpService

setMaxThreads(int) - Method in interface net.imagej.ops.OpEnvironment

Sets the maximum number of threads any single op is allowed to use.

setMaxY(double) - Method in class net.imagej.options.OptionsProfilePlot

setMemoryInMB(int) - Method in class net.imagej.config.ConfigFileParameters

Sets the value of the number of megabytes of ram to allocate.

setMenuFontSize(int) - Method in class net.imagej.options.OptionsAppearance

setMinBin(long) - Method in class net.imagej.widget.HistogramBundle

Sets the bin number of the minimum value.

setMinimum(double) - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast

setMinY(double) - Method in class net.imagej.options.OptionsProfilePlot

setMode(String) - Method in class net.imagej.options.OptionsWandTool

setModernImageJResultsTable() - Method in class net.imagej.legacy.translate.ResultsTableHarmonizer

setModule(Module) - Method in class net.imagej.ops.OpCandidate

Sets the module instance associated with the attempted match.

setMoveIsolatedPlugins(boolean) - Method in class net.imagej.options.OptionsMisc

setMultipleBuffers(boolean) - Method in class net.imagej.options.OptionsMemoryAndThreads

Sets whether ImageJ will maintain multiple undo buffers.

setN(int) - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment

Set order n

setName(String) - Method in class net.imagej.AbstractData

setName(String) - Method in class net.imagej.DefaultDataset

setName(String) - Method in class net.imagej.ImgPlus

setName(String) - Method in class net.imagej.omero.OMEROFormat.Metadata

setName(String) - Method in interface net.imagej.ops.Namespace

setName(String) - Method in class net.imagej.plugins.commands.io.NewImage

setName(String) - Method in class net.imagej.updater.UpdateSite

setNamespace(String) - Method in class net.imagej.omero.ScriptGenerator

setNegativeX(long) - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier

setNegativeY(long) - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier

setNeighborhood(Neighborhood) - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin

setNeighborhoodType(AbstractNoiseReducerPlugin.NeighborhoodType) - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin

setNewAxisIndex(int, int) - Method in class net.imagej.plugins.commands.restructure.ReorderData

Sets newAxes[index] from existingAxes[fromPosition]

setNewWindow(boolean) - Method in class net.imagej.plugins.commands.calculator.ImageCalculator

Sets whether image calculation will create a new image window.

setNoAction() - Method in class net.imagej.updater.FileObject

setNoImageBorder(boolean) - Method in class net.imagej.options.OptionsAppearance

setNormal(long, double, double, double) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

setNormal(long, double, double, double) - Method in interface net.imagej.mesh.Vertices

Overwrites a vertex's normal.

setNormalf(long, float, float, float) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

setNormalf(long, float, float, float) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices

setNormalf(long, float, float, float) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices

setNormalf(long, float, float, float) - Method in interface net.imagej.mesh.Vertices

Overwrites a vertex's normal.

setNoSaveXValues(boolean) - Method in class net.imagej.options.OptionsProfilePlot

setNumberOfElements(int) - Method in class net.imagej.ops.thread.chunker.AbstractChunker

setNumberOfElements(int) - Method in interface net.imagej.ops.thread.chunker.ChunkerOp

Sets the total number of elements which should be processed in parallel.

setNumThreads() - Method in class net.imagej.minmax.DefaultMinMaxMethod

setNumThreads(int) - Method in class net.imagej.minmax.DefaultMinMaxMethod

setNumThreads() - Method in interface net.imagej.minmax.MinMaxMethod

Sets number of threads to default

setNumThreads(int) - Method in interface net.imagej.minmax.MinMaxMethod

Sets number of threads to use

setObf(OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.pad.PadInputFFT

setOBFInput(OutOfBoundsFactory<I, RandomAccessibleInterval>) - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter

setOBFKernel(OutOfBoundsFactory<K, RandomAccessibleInterval<K>>) - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter

setOfficial(boolean) - Method in class net.imagej.updater.UpdateSite

Sets the flag indicating whether the site is listed on the canonical list of update sites.

setOffset(double) - Method in class net.imagej.units.LinearCalibrator

setOKLabel(String) - Method in class imagej.patcher.HeadlessGenericDialog

Deprecated.

setOKLabel(String) - Method in class net.imagej.patcher.HeadlessGenericDialog

setOne() - Method in class net.imagej.types.BigComplex

Sets this BigComplex to the unity value.

setOne() - Method in class net.imagej.types.PreciseFixedComplexFloatType

setOne() - Method in class net.imagej.types.PreciseFixedFloatType

setOne() - Method in class net.imagej.types.UnboundedIntegerType

setOp(UnaryComputerOp<I, I>) - Method in class net.imagej.ops.loop.DefaultLoopComputer

setOp(UnaryInplaceOp<A, A>) - Method in class net.imagej.ops.loop.DefaultLoopInplace

setOp(OP) - Method in interface net.imagej.ops.loop.LoopOp

setOp(BinaryComputerOp<EI1, EI2, EO>) - Method in class net.imagej.ops.map.AbstractMapBinaryComputer

setOp(BinaryInplaceOp<EI, EO>) - Method in class net.imagej.ops.map.AbstractMapBinaryInplace

setOp(BinaryInplace1Op<EI1, EI2, EO>) - Method in class net.imagej.ops.map.AbstractMapBinaryInplace1

setOp(UnaryComputerOp<EI, EO>) - Method in class net.imagej.ops.map.AbstractMapComputer

setOp(UnaryInplaceOp<EI, EO>) - Method in class net.imagej.ops.map.AbstractMapInplace

setOp(NullaryComputerOp<EO>) - Method in class net.imagej.ops.map.AbstractMapNullaryComputer

setOp(UnaryComputerOp<EI, EO>) - Method in class net.imagej.ops.map.AbstractMapView

setOp(OP) - Method in interface net.imagej.ops.map.MapOp

setOp(OP) - Method in class net.imagej.ops.map.neighborhood.AbstractMapNeighborhood

setOpenAs32bitFloat(boolean) - Method in class net.imagej.options.OptionsDicom

setOperation(CalculatorOp<U, V>) - Method in class net.imagej.plugins.commands.calculator.ImageCalculator

Sets the CalculatorOp to be used in the image calculation.

setOps(List<? extends UnaryComputerOp<A, A>>) - Method in class net.imagej.ops.join.DefaultJoinNComputers

setOps(List<? extends UnaryInplaceOp<A, A>>) - Method in class net.imagej.ops.join.DefaultJoinNInplaces

setOps(List<? extends OP>) - Method in interface net.imagej.ops.join.JoinNOps

Sets the Ops which are joined in this op.

setOptions(String) - Method in class net.imagej.legacy.IJ1Helper

Delegates to ImageJ 1.x' Macro.setOptions(String) function.

setOrder(int) - Method in class net.imagej.ops.features.zernike.helper.ZernikeComputer

setOrder(double) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionContraharmonicMean

setOrder(String) - Method in class net.imagej.plugins.commands.restructure.ReorderAxis

Sets the order of planes along an axis.

setOrigin(double) - Method in class net.imagej.axis.DefaultLinearAxis

setOrigin(double) - Method in interface net.imagej.axis.LinearAxis

setOrigin(double, int) - Method in class net.imagej.overlay.EllipseOverlay

setOrigin(double, int) - Method in class net.imagej.overlay.RectangleOverlay

setOriginalData(Object[]) - Method in class net.imagej.omero.OMERORefColumn

setOriginMax(int) - Method in class net.imagej.plugins.commands.imglib.ResliceImage

Sets the origin point of the reslicing for the user specified axis to the largest value of the axis.

setOriginMin(int) - Method in class net.imagej.plugins.commands.imglib.ResliceImage

Sets the origin point of the reslicing for the user specified axis to the smallest value of the axis.

setOutput(String, String) - Static method in class net.imagej.legacy.plugin.IJ1MacroEngine

Deprecated.
Macros no longer call this method. Nor should you.

setOutput(O) - Method in class net.imagej.ops.special.computer.AbstractBinaryComputerOp

setOutput(O) - Method in class net.imagej.ops.special.computer.AbstractNullaryComputerOp

setOutput(O) - Method in class net.imagej.ops.special.computer.AbstractUnaryComputerOp

setOutput(O) - Method in class net.imagej.ops.special.hybrid.AbstractBinaryHybridC

setOutput(O) - Method in class net.imagej.ops.special.hybrid.AbstractNullaryHybridCF

setOutput(O) - Method in class net.imagej.ops.special.hybrid.AbstractUnaryHybridC

setOutput(O) - Method in interface net.imagej.ops.special.OutputMutable

setOutputFactory(UnaryOutputFactory<A, B>) - Method in interface net.imagej.ops.join.BufferFactory

Sets the UnaryOutputFactory which is used to create intermediate results.

setOutputFactory(UnaryOutputFactory<A, B>) - Method in class net.imagej.ops.join.DefaultJoin2Computers

setOutputFactory(UnaryOutputFactory<A, A>) - Method in class net.imagej.ops.join.DefaultJoinNComputers

setOutputFactory(UnaryOutputFactory<I, I>) - Method in class net.imagej.ops.loop.DefaultLoopComputer

setOutputFactory(UnaryOutputFactory<I, I>) - Method in interface net.imagej.ops.loop.LoopComputer

setOval(boolean) - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify

setOverlay(Overlay) - Method in class net.imagej.plugins.commands.assign.FillDataValues

setOverlays(List<Overlay>, Overlay, ImagePlus) - Method in class net.imagej.legacy.translate.OverlayHarmonizer

Deprecated.

Assigns a list of Overlays to the given ImagePlus.

setOverlays(List<Overlay>) - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties

setP(Polynom) - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment

Set radial polynom p

setPanCenter(RealCoords) - Method in class net.imagej.display.DefaultImageCanvas

setPanCenter(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas

setPanCenter(RealCoords) - Method in interface net.imagej.display.Pannable

Pans to the given absolute (X, Y) position in data coordinate space.

setPanCenter(IntCoords) - Method in interface net.imagej.display.Pannable

Pans to the given absolute (X, Y) position in panel coordinate space.

setParent(TreeNode<?>) - Method in class net.imagej.omero.roi.DefaultOMEROROICollection

setParent(TreeNode<?>) - Method in class net.imagej.omero.roi.DefaultOMEROROIElement

setParent(TreeNode<?>) - Method in class net.imagej.omero.roi.LazyROITree

setParent(TreeNode<?>) - Method in interface net.imagej.roi.ROITree

setPepperValue(double) - Method in class net.imagej.plugins.commands.imglib.SaltAndPepper

setPhysicalSizeX(Length) - Method in class net.imagej.omero.OMEROFormat.Metadata

setPhysicalSizeY(Length) - Method in class net.imagej.omero.OMEROFormat.Metadata

setPhysicalSizeZ(Length) - Method in class net.imagej.omero.OMEROFormat.Metadata

setPixels(Pixels) - Method in class net.imagej.omero.OMEROFormat.Metadata

setPixelsID(long) - Method in class net.imagej.omero.OMEROFormat.Metadata

setPixelType(String) - Method in class net.imagej.omero.OMEROFormat.Metadata

setPlanar(boolean) - Method in class net.imagej.command.AbstractPlanarCommand

setPlanar(boolean) - Method in interface net.imagej.command.PlanarCommand

setPlane(int, Object) - Method in interface net.imagej.Dataset

sets a plane of data within the dataset.

setPlane(int, Object) - Method in class net.imagej.DefaultDataset

setPlaneSilently(int, Object) - Method in interface net.imagej.Dataset

sets a plane of data within the dataset.

setPlaneSilently(int, Object) - Method in class net.imagej.DefaultDataset

setPoint(int, double[]) - Method in class net.imagej.overlay.PointOverlay

setPoint1(int[]) - Method in class net.imagej.ops.geom.geom3d.mesh.AbstractVertexInterpolator

setPoint1(int[]) - Method in interface net.imagej.ops.geom.geom3d.mesh.VertexInterpolator

setPoint1(double[]) - Method in class net.imagej.overlay.AngleOverlay

setPoint1(double, int) - Method in class net.imagej.overlay.AngleOverlay

setPoint2(int[]) - Method in class net.imagej.ops.geom.geom3d.mesh.AbstractVertexInterpolator

setPoint2(int[]) - Method in interface net.imagej.ops.geom.geom3d.mesh.VertexInterpolator

setPoint2(double[]) - Method in class net.imagej.overlay.AngleOverlay

setPoint2(double, int) - Method in class net.imagej.overlay.AngleOverlay

setPoints(List<Point2D.Double>) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolygon

setPoints(List<Point2D.Double>) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyline

setPoints(List<Point2D.Double>) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape

setPoints(List<double[]>) - Method in class net.imagej.overlay.PointOverlay

setPoints(List<double[]>) - Method in class net.imagej.ui.swing.overlay.PointFigure

setPointX(long) - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify

setPointY(long) - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify

setPort(int) - Method in class net.imagej.options.OptionsProxy

setPosition(long, AxisType) - Method in class net.imagej.display.AbstractDataView

setPosition(Localizable) - Method in class net.imagej.display.AbstractDataView

setPosition(int[]) - Method in class net.imagej.display.AbstractDataView

setPosition(long[]) - Method in class net.imagej.display.AbstractDataView

setPosition(int, int) - Method in class net.imagej.display.AbstractDataView

setPosition(long, int) - Method in class net.imagej.display.AbstractDataView

setPosition(long, AxisType) - Method in class net.imagej.display.DefaultDatasetView

setPosition(long, AxisType) - Method in class net.imagej.display.DefaultImageDisplay

setPosition(Localizable) - Method in class net.imagej.display.DefaultImageDisplay

setPosition(int[]) - Method in class net.imagej.display.DefaultImageDisplay

setPosition(long[]) - Method in class net.imagej.display.DefaultImageDisplay

setPosition(int, int) - Method in class net.imagej.display.DefaultImageDisplay

setPosition(long, int) - Method in class net.imagej.display.DefaultImageDisplay

setPosition(long[]) - Method in class net.imagej.DrawingTool

Sets this DrawingHelper's current drawing position.

setPosition(long, double, double, double) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

setPosition(long, double, double, double) - Method in interface net.imagej.mesh.Vertices

Overwrites a vertex's position.

setPosition(RealLocalizable) - Method in interface net.imagej.omero.roi.point.OMEROPoint

setPosition(float[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint

setPosition(double[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint

setPosition(float, int) - Method in interface net.imagej.omero.roi.point.OMEROPoint

setPosition(double, int) - Method in interface net.imagej.omero.roi.point.OMEROPoint

setPosition(Localizable) - Method in interface net.imagej.omero.roi.point.OMEROPoint

setPosition(int[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint

setPosition(long[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint

setPosition(int, int) - Method in interface net.imagej.omero.roi.point.OMEROPoint

setPosition(long, int) - Method in interface net.imagej.omero.roi.point.OMEROPoint

setPosition(Position) - Method in class net.imagej.plugins.commands.assign.FillDataValues

setPosition(long) - Method in class net.imagej.plugins.commands.restructure.AddData

setPosition(long) - Method in class net.imagej.plugins.commands.restructure.DeleteAxis

setPosition(long) - Method in class net.imagej.plugins.commands.restructure.DeleteData

setPosition(long, int) - Method in class net.imagej.Position

Sets the value of the Position for a given dimension.

setPosition(long[]) - Method in class net.imagej.Position

Sets the values of the Position for all dimensions.

setPosition(int[]) - Method in class net.imagej.Position

Sets the values of the Position for all dimensions.

setPosition(int, int) - Method in class net.imagej.Position

Sets the value of the Position for a given dimension.

setPosition(Localizable) - Method in class net.imagej.Position

Sets the values of the Position for all dimensions.

setPosition(long, AxisType) - Method in interface net.imagej.PositionableByAxis

Sets the position of the element for one dimension.

setPositionf(long, float, float, float) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

setPositionf(long, float, float, float) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices

setPositionf(long, float, float, float) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices

setPositionf(long, float, float, float) - Method in interface net.imagej.mesh.Vertices

Overwrites a vertex's position.

setPositiveX(long) - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier

setPositiveY(long) - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier

setPref(String, String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface

setPref(String, String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface

setPref(String, String) - Method in class net.imagej.updater.util.UpdaterUserInterface

setPref(String, String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface

setPreferredChannel(long) - Method in class net.imagej.DrawingTool

Set the preferred channel to draw on.

setPreferredSize(Dimension) - Method in class net.imagej.ui.swing.SwingColorBar

setPreferredSize(int, int) - Method in class net.imagej.widget.HistogramBundle

Sets the preferred size for the rendering of this histogram as a widget.

setPreview(boolean) - Method in class net.imagej.plugins.commands.assign.MathCommand

setProcessingEvents(boolean) - Method in class net.imagej.legacy.LegacyService

This is not part of the public API.

setProgress(int, int) - Method in class net.imagej.legacy.IJ1Helper

setProgress(int, int) - Method in class net.imagej.legacy.ui.LegacyStatusBar

setProxyServer(String) - Method in class net.imagej.options.OptionsProxy

setPValue(Double) - Method in class net.imagej.ops.coloc.pValue.PValueResult

setQuantity(long) - Method in class net.imagej.plugins.commands.restructure.AddData

setQuantity(long) - Method in class net.imagej.plugins.commands.restructure.DeleteData

setRadius(double, int) - Method in class net.imagej.overlay.EllipseOverlay

setRadius(long) - Method in class net.imagej.plugins.commands.assign.noisereduce.RadialNeighborhoodSpecifier

setRate(int) - Method in class net.imagej.plugins.tools.SprayCanTool

setReal(long) - Method in class net.imagej.types.BigComplex

Sets the real component of this BigComplex to given long value.

setReal(float) - Method in class net.imagej.types.BigComplex

Sets the real component of this BigComplex to given float value.

setReal(double) - Method in class net.imagej.types.BigComplex

Sets the real component of this BigComplex to given double value.

setReal(BigInteger) - Method in class net.imagej.types.BigComplex

Sets the real component of this BigComplex to given BigInteger value.

setReal(BigDecimal) - Method in class net.imagej.types.BigComplex

Sets the real component of this BigComplex to given BigDecimal value.

setReal(String) - Method in class net.imagej.types.BigComplex

Sets the real component of this BigComplex to given String value.

setReal(double) - Method in class net.imagej.types.PreciseFixedComplexFloatType

setReal(BigDecimal) - Method in class net.imagej.types.PreciseFixedComplexFloatType

setReal(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType

setReal(float) - Method in class net.imagej.types.PreciseFixedComplexFloatType

setReal(float) - Method in class net.imagej.types.PreciseFixedFloatType

setReal(double) - Method in class net.imagej.types.PreciseFixedFloatType

setReal(float) - Method in class net.imagej.types.UnboundedIntegerType

setReal(double) - Method in class net.imagej.types.UnboundedIntegerType

setRegionOfInterest(R) - Method in class net.imagej.overlay.AbstractROIOverlay

setRegionOfInterest(GeneralPathRegionOfInterest) - Method in class net.imagej.overlay.GeneralPathOverlay

setRepetition(int) - Method in class net.imagej.ops.features.zernike.helper.ZernikeComputer

setRequireCommandKey(boolean) - Method in class net.imagej.options.OptionsMisc

setRGBMerged(boolean) - Method in interface net.imagej.Dataset

For use in legacy layer only, this flag allows the various legacy layer image translators to support color images correctly.

setRGBMerged(boolean) - Method in class net.imagej.DefaultDataset

setRois(ROITree) - Method in class net.imagej.omero.OMEROFormat.Metadata

setRotateXZ(boolean) - Method in class net.imagej.options.OptionsDicom

setRotateYZ(boolean) - Method in class net.imagej.options.OptionsDicom

setRowCount(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

setRowHeader(int, String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

setRunGcOnClick(boolean) - Method in class net.imagej.options.OptionsMemoryAndThreads

Sets whether ImageJ will run the garbage collector when user clicks on the status area.

setRunSingleInstanceListener(boolean) - Method in class net.imagej.options.OptionsMisc

setSaltValue(double) - Method in class net.imagej.plugins.commands.imglib.SaltAndPepper

setSaveColumnHeaders(boolean) - Method in class net.imagej.options.OptionsInputOutput

setSaveOrderIntel(boolean) - Method in class net.imagej.options.OptionsInputOutput

setSaveRowNumbers(boolean) - Method in class net.imagej.options.OptionsInputOutput

setScale(double) - Method in class net.imagej.axis.DefaultLinearAxis

setScale(double) - Method in interface net.imagej.axis.LinearAxis

setScale(double) - Method in class net.imagej.units.LinearCalibrator

setScaleWhenConverting(boolean) - Method in class net.imagej.options.OptionsConversions

setSecond(UnaryComputerOp<B, C>) - Method in class net.imagej.ops.join.DefaultJoin2Computers

setSecond(UnaryInplaceOp<A, A>) - Method in class net.imagej.ops.join.DefaultJoin2Inplaces

setSecond(UnaryInplaceOp<B, B>) - Method in class net.imagej.ops.join.DefaultJoinComputerAndInplace

setSecond(UnaryComputerOp<A, B>) - Method in class net.imagej.ops.join.DefaultJoinInplaceAndComputer

setSecond(OP2) - Method in interface net.imagej.ops.join.Join2Ops

setSeed(long) - Method in class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseRealType

setSeed(long) - Method in class net.imagej.ops.math.UnaryRealTypeMath.RandomGaussian

setSeed(long) - Method in class net.imagej.ops.math.UnaryRealTypeMath.RandomUniform

setSelected(boolean) - Method in class net.imagej.display.AbstractDataView

setSelected(boolean) - Method in interface net.imagej.display.DataView

Set the view's selection state.

setSelected(boolean) - Method in class net.imagej.display.OverlayInfo

setSelection(boolean) - Method in class net.imagej.ui.swing.overlay.ToolDelegator

setSelectionColor(ColorRGB) - Method in class net.imagej.options.OptionsAppearance

setSemiAxisLength(int, double) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

This will always throw an UnsupportedOperationException.

setSemiAxisLength(int, double) - Method in interface net.imagej.omero.roi.ellipse.OMEROEllipse

setSideLength(int, double) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper

This will always throw an UnsupportedOperationException.

setSideLength(int, double) - Method in interface net.imagej.omero.roi.rectangle.OMERORectangle

setSize(int) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

setSizeC(int) - Method in class net.imagej.omero.OMEROFormat.Metadata

setSizeT(int) - Method in class net.imagej.omero.OMEROFormat.Metadata

setSizeX(int) - Method in class net.imagej.omero.OMEROFormat.Metadata

setSizeY(int) - Method in class net.imagej.omero.OMEROFormat.Metadata

setSizeZ(int) - Method in class net.imagej.omero.OMEROFormat.Metadata

setSmartRecording(boolean) - Method in class imagej.patcher.HeadlessGenericDialog

Deprecated.

setSmartRecording(boolean) - Method in class net.imagej.patcher.HeadlessGenericDialog

setSource(String) - Method in class net.imagej.DefaultDataset

setSource(String) - Method in class net.imagej.ImgPlus

setSource(String) - Method in interface net.imagej.Sourced

Sets the source String

setSpacing(int, double) - Method in class net.imagej.plugins.commands.imglib.ResliceImage

Sets the reslice spacing for a given axis to a given value.

setStackThreads(int) - Method in class net.imagej.options.OptionsMemoryAndThreads

Sets the number of stack threads that should be allocated for use by ImageJ.

setStartArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.options.OptionsOverlay

setStartArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.overlay.OverlaySettings

setStartingWavelength(int) - Method in class net.imagej.plugins.commands.display.SpectralComposite

setStatus(String) - Method in class net.imagej.legacy.IJ1Helper

setStatus(String) - Method in class net.imagej.legacy.ui.LegacyStatusBar

setStatus(OpCandidate.StatusCode) - Method in class net.imagej.ops.OpCandidate

Sets the status of the matching attempt.

setStatus(OpCandidate.StatusCode, String) - Method in class net.imagej.ops.OpCandidate

Sets the status of the matching attempt.

setStatus(OpCandidate.StatusCode, String, ModuleItem<?>) - Method in class net.imagej.ops.OpCandidate

Sets the status of the matching.

setStatus(FileObject.Status) - Method in class net.imagej.updater.FileObject

setStdDev(double) - Method in class net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues

setStdDev(double) - Method in class net.imagej.plugins.commands.assign.NoiseAdder

Specify the standard deviation of the gaussian range desired.

setStrokeColor(Color) - Method in class net.imagej.omero.legacy.LazyOverlay

setStrokeColor(ColorRGB) - Method in class net.imagej.options.OptionsRoundedRectangleTool

setStrokeWidth(int) - Method in class net.imagej.options.OptionsRoundedRectangleTool

setStyle(Component, int, int) - Method in class net.imagej.ui.swing.updater.FileTable

setTableFileExtension(String) - Method in class net.imagej.options.OptionsInputOutput

setTables(List<Table<?, ?>>) - Method in class net.imagej.omero.OMEROFormat.Metadata

setTailProportions(double, double) - Method in class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod

Sets the fractional proportions of the distribution.

setTargetJavaVersion(String) - Method in class net.imagej.options.OptionsCompiler

setText(W) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.AbstractWrappedOMERORealMaskToMaskPredicate

setText(OMEROMaskWrapper) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.OMEROMaskWrapperToOMEROMask

setText(EllipsoidWrapper) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROEllipseToOMEROEllipse

setText(LineWrapper) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROLineToOMEROLine

setText(PointMaskWrapper) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPointToOMEROPoint

setText(Polygon2DWrapper) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolygonToOMEROPolygon

setText(PolylineWrapper) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolylineToOMEROPolyline

setText(BoxWrapper) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMERORectangleToOMERORectangle

setText(OMEROTextWrapper) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROTextToOMEROText

setText(String) - Method in class net.imagej.omero.legacy.text.OMEROText

setText(String) - Method in class net.imagej.overlay.TextOverlay

setTextAntialiasing(boolean) - Method in class net.imagej.DrawingTool

Turns antialiasing of drawn text on (true) or off (false)

setTextRenderer(TextRenderer) - Method in class net.imagej.DrawingTool

setTexture(long, double, double) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

setTexture(long, double, double) - Method in interface net.imagej.mesh.Vertices

Overwrites a vertex's texture coordinates.

setTexturef(long, float, float) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

setTexturef(long, float, float) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices

setTexturef(long, float, float) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices

setTexturef(long, float, float) - Method in interface net.imagej.mesh.Vertices

Overwrites a vertex's texture coordinates.

setTheoreticalMinMax(double, double) - Method in class net.imagej.widget.HistogramBundle

Sets the min/max values of the desired range.

setThresholdEachPlane(boolean) - Method in class net.imagej.plugins.commands.binary.Binarize

Set whether to threshold each plane separately or to threshold the whole image at once.

setThresholdMethod(ThresholdMethod) - Method in class net.imagej.plugins.commands.binary.Binarize

Sets the threshold method to use for pixel discrimination.

setTimeIncrement(Time) - Method in class net.imagej.omero.OMEROFormat.Metadata

setTimestamp(long) - Method in class net.imagej.updater.UpdateSite

setTitle(String) - Method in class net.imagej.ui.swing.updater.ProgressDialog

setTitle() - Method in class net.imagej.ui.swing.updater.ProgressDialog

setTitle(String) - Method in class net.imagej.updater.FilesUploader.VerifyTimestamp

setTitle(String) - Method in class net.imagej.updater.util.AbstractProgressable

setTitle(String) - Method in interface net.imagej.updater.util.Progress

setTitle(String) - Method in class net.imagej.updater.util.StderrProgress

setTolerance(double) - Method in class net.imagej.options.OptionsWandTool

setToStart(Cursor<?>, long) - Static method in class net.imagej.ops.thread.chunker.CursorBasedChunk

setTransparentIndex(int) - Method in class net.imagej.options.OptionsInputOutput

setType(AxisType) - Method in class net.imagej.axis.DefaultTypedAxis

setType(AxisType) - Method in interface net.imagej.axis.TypedAxis

Sets the type of the axis.

setType(EO) - Method in class net.imagej.ops.map.AbstractMapView

setType(EO) - Method in interface net.imagej.ops.map.MapView

setUAxis(int) - Method in class net.imagej.DrawingTool

Sets the U axis index this DrawingTool will work in.

setUnit(String) - Method in class net.imagej.axis.AbstractCalibratedAxis

setUnit(String) - Method in interface net.imagej.axis.CalibratedAxis

Sets the dimension's unit.

setUnit(String) - Method in class net.imagej.plugins.commands.imglib.RotateImageXY

Sets the current angle unit setting (radians or dgrees).

setUnit(int, String) - Method in class net.imagej.plugins.commands.restructure.EditAxes

setup() - Method in class imagej.patcher.HeadlessGenericDialog

Deprecated.

setup() - Method in class net.imagej.patcher.HeadlessGenericDialog

setup() - Method in interface net.imagej.plugins.commands.neigh.Neighborhood3x3Watcher

Called once before the neighborhood iterations take place to allow implementer to initialize state.

setUpdateablePlatforms(String...) - Method in class net.imagej.updater.util.UpdaterUtil

setUpdateDefaults(boolean) - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties

setUpdateSitesChanged(boolean) - Method in class net.imagej.updater.FilesCollection

setUploadDirectory(String) - Method in class net.imagej.updater.UpdateSite

setURL(String) - Method in class net.imagej.updater.UpdateSite

setUseInvertingLUT(boolean) - Method in class net.imagej.options.OptionsAppearance

setUseJFileChooser(boolean) - Method in class net.imagej.options.OptionsInputOutput

setUsePtrCursor(boolean) - Method in class net.imagej.options.OptionsMisc

setUserInterface() - Static method in class net.imagej.updater.CommandLine

setUseSystemProxy(boolean) - Method in class net.imagej.options.OptionsProxy

setUseUserUnits(boolean) - Method in class net.imagej.plugins.commands.imglib.ResliceImage

Sets whether reslice spacing field values are in user units or pixel units.

setUseUserUnits(boolean) - Method in class net.imagej.plugins.commands.imglib.TranslateImage

Sets whether input deltas field values are in user units or pixel units.

setValidBits(int) - Method in class net.imagej.DefaultDataset

setValidBits(int) - Method in interface net.imagej.ImageMetadata

Sets the number of valid bits.

setValidBits(int) - Method in class net.imagej.ImgPlus

setValue(int, int, double) - Method in class net.imagej.legacy.convert.TableWrapper

setValue(int, int, String) - Method in class net.imagej.legacy.convert.TableWrapper

setValue(double) - Method in class net.imagej.plugins.commands.assign.AddToDataValues

setValue(long) - Method in class net.imagej.plugins.commands.assign.AndDataValuesWith

setValue(double) - Method in class net.imagej.plugins.commands.assign.DivideDataValuesBy

setValue(double) - Method in class net.imagej.plugins.commands.assign.GammaDataValues

setValue(double) - Method in class net.imagej.plugins.commands.assign.MaxDataValues

setValue(double) - Method in class net.imagej.plugins.commands.assign.MinDataValues

setValue(double) - Method in class net.imagej.plugins.commands.assign.MultiplyDataValuesBy

setValue(long) - Method in class net.imagej.plugins.commands.assign.OrDataValuesWith

setValue(double) - Method in class net.imagej.plugins.commands.assign.PowerDataValues

setValue(double) - Method in class net.imagej.plugins.commands.assign.SetDataValues

setValue(double) - Method in class net.imagej.plugins.commands.assign.SubtractFromDataValues

setValue(long) - Method in class net.imagej.plugins.commands.assign.XorDataValuesWith

setValue1(double) - Method in class net.imagej.ops.geom.geom3d.mesh.AbstractVertexInterpolator

setValue1(double) - Method in interface net.imagej.ops.geom.geom3d.mesh.VertexInterpolator

setValue2(double) - Method in class net.imagej.ops.geom.geom3d.mesh.AbstractVertexInterpolator

setValue2(double) - Method in interface net.imagej.ops.geom.geom3d.mesh.VertexInterpolator

setValueAt(Object, int, int) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel

setValueMethod(String) - Method in class net.imagej.plugins.commands.imglib.Binner

Sets the value method used to combine pixels.

setValues(double[]) - Method in class net.imagej.axis.EnumeratedAxis

Sets the axis's calibrated values.

setVar(int, String, double) - Method in class net.imagej.plugins.commands.restructure.EditAxes

setVAxis(int) - Method in class net.imagej.DrawingTool

Sets the V axis index this DrawingTool will work in.

setVertexInFront(Vertex, double) - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet

Adds a vertex to the points in front of this facet.

setVertProfile(boolean) - Method in class net.imagej.options.OptionsProfilePlot

setView(DatasetView) - Method in class net.imagej.command.AbstractPlanarCommand

setView(DatasetView) - Method in interface net.imagej.command.PlanarCommand

setView(DatasetView) - Method in class net.imagej.plugins.commands.display.ChannelsTool

setView(DatasetView) - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast

setView(DatasetView) - Method in class net.imagej.plugins.commands.display.SpectralComposite

setViewOption(ViewOptions.Option) - Method in class net.imagej.ui.swing.updater.UpdaterFrame

setViewportSize(int, int) - Method in class net.imagej.display.DefaultImageCanvas

setViewportSize(int, int) - Method in interface net.imagej.display.ImageCanvas

Sets the dimensions of the viewport in panel coordinates.

setVisible(boolean) - Method in class net.imagej.legacy.IJ1Helper

setVisible(boolean) - Method in class net.imagej.legacy.ui.LegacyApplicationFrame

setVisible(boolean) - Method in class net.imagej.ui.swing.updater.ConflictDialog

setVisible(boolean) - Method in class net.imagej.ui.swing.updater.UpdaterFrame

setWaveIncrement(RInt) - Method in class net.imagej.omero.OMEROFormat.Metadata

setWaveStart(RInt) - Method in class net.imagej.omero.OMEROFormat.Metadata

setWeightedRgbConversions(boolean) - Method in class net.imagej.options.OptionsConversions

setWidth(int) - Method in class net.imagej.options.OptionsProfilePlot

setWidth(long) - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify

setWidth(int) - Method in class net.imagej.plugins.tools.SprayCanTool

setX(double) - Method in class net.imagej.omero.legacy.text.OMEROText

Sets the x coordinate of where the text starts.

setY(double) - Method in class net.imagej.omero.legacy.text.OMEROText

Sets the y coordinate of the base of where the text starts.

setyFixedScale(boolean) - Method in class net.imagej.options.OptionsProfilePlot

setZero() - Method in class net.imagej.types.BigComplex

Sets this BigComplex to the zero value.

setZero() - Method in class net.imagej.types.PreciseFixedComplexFloatType

setZero() - Method in class net.imagej.types.PreciseFixedFloatType

setZero() - Method in class net.imagej.types.UnboundedIntegerType

setZm(BigComplex) - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment

Set zernike moment in complex representation

setZoom(double) - Method in class net.imagej.display.DefaultImageCanvas

setZoom(double) - Method in interface net.imagej.display.Zoomable

Zooms to the given scale factor, without changing the viewport's center.

setZoomAndCenter(double) - Method in class net.imagej.display.DefaultImageCanvas

setZoomAndCenter(double, RealCoords) - Method in class net.imagej.display.DefaultImageCanvas

setZoomAndCenter(double) - Method in interface net.imagej.display.Zoomable

Zooms to the given scale factor, recentering the viewport at the center of the data space.

setZoomAndCenter(double, RealCoords) - Method in interface net.imagej.display.Zoomable

Zooms to the given scale factor, recentering the viewport at the specified data coordinates.

setZoomAtPoint(double, RealCoords) - Method in class net.imagej.display.DefaultImageCanvas

setZoomAtPoint(double, IntCoords) - Method in class net.imagej.display.DefaultImageCanvas

setZoomAtPoint(double, RealCoords) - Method in interface net.imagej.display.Zoomable

Zooms to the given scale factor, such that the specified position in data coordinates remains at the same place in the viewport.

setZoomAtPoint(double, IntCoords) - Method in interface net.imagej.display.Zoomable

Zooms to the given scale factor, such that the specified position in panel coordinates remains at the same place in the viewport.

setZoomPercent(double) - Method in class net.imagej.plugins.commands.zoom.ZoomSet

SFTPFileUploader - Class in net.imagej.plugins.uploaders.ssh

Uploads files to an update server using only SFTP protocol.

SFTPFileUploader() - Constructor for class net.imagej.plugins.uploaders.ssh.SFTPFileUploader

ShadowsDemo - Class in net.imagej.plugins.commands.correlate

Implements legacy ImageJ's Shadows Demo plugin functionality.

ShadowsDemo() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsDemo

ShadowsEast - Class in net.imagej.plugins.commands.correlate

Implements legacy ImageJ's Shadows East plugin functionality.

ShadowsEast() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsEast

ShadowsNorth - Class in net.imagej.plugins.commands.correlate

Implements legacy ImageJ's Shadows North plugin functionality.

ShadowsNorth() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsNorth

ShadowsNortheast - Class in net.imagej.plugins.commands.correlate

Implements legacy ImageJ's Shadows Northeast plugin functionality.

ShadowsNortheast() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsNortheast

ShadowsNorthwest - Class in net.imagej.plugins.commands.correlate

Implements legacy ImageJ's Shadows Northwest plugin functionality.

ShadowsNorthwest() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsNorthwest

ShadowsSouth - Class in net.imagej.plugins.commands.correlate

Implements legacy ImageJ's Shadows South plugin functionality.

ShadowsSouth() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsSouth

ShadowsSoutheast - Class in net.imagej.plugins.commands.correlate

Implements legacy ImageJ's Shadows Southeast plugin functionality.

ShadowsSoutheast() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsSoutheast

ShadowsSouthwest - Class in net.imagej.plugins.commands.correlate

Implements legacy ImageJ's Shadows Southwest plugin functionality.

ShadowsSouthwest() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsSouthwest

ShadowsWest - Class in net.imagej.plugins.commands.correlate

Implements legacy ImageJ's Shadows West plugin functionality.

ShadowsWest() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsWest

Shanbhag() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Shanbhag

shanbhag(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

shanbhag(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

shanbhag(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

shanbhag(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

shanbhag(IterableInterval, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

shanbhag(IterableInterval, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

shape - Variable in class net.imagej.omero.roi.AbstractOMERORealMaskRealInterval

shape - Variable in class net.imagej.ops.threshold.apply.LocalThresholdIntegral

shapeDataEquals(ShapeData, ShapeData) - Static method in class net.imagej.omero.roi.ROIConverters

Checks if the two given ShapeData objects are equivalent.

ShapeDataToTransformedOMERORealMaskRealInterval - Class in net.imagej.omero.roi.transform

Converts a transformed ShapeData to a TransformedOMERORealMaskRealInterval.

ShapeDataToTransformedOMERORealMaskRealInterval() - Constructor for class net.imagej.omero.roi.transform.ShapeDataToTransformedOMERORealMaskRealInterval

ShapeRoiToMaskRealIntervalConverter - Class in net.imagej.legacy.convert.roi

Converts an ImageJ 1.x ShapeRoi to an ImgLib2 RealMaskRealInterval.

ShapeRoiToMaskRealIntervalConverter() - Constructor for class net.imagej.legacy.convert.roi.ShapeRoiToMaskRealIntervalConverter

ShapeRoiToMaskRealIntervalOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.ShapeRoiToMaskRealIntervalOMEROConverter

ShapeRoiWrapper - Class in net.imagej.legacy.convert.roi

Wraps an ImageJ 1.x ShapeRoi as an ImgLib2 RealMaskRealInterval.

ShapeRoiWrapper(ShapeRoi) - Constructor for class net.imagej.legacy.convert.roi.ShapeRoiWrapper

ShapeRoiWrapperToMaskData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.ShapeRoiWrapperToMaskData

SharpenDataValues - Class in net.imagej.plugins.commands.correlate

Implements legacy ImageJ's Sharpen plugin functionality

SharpenDataValues() - Constructor for class net.imagej.plugins.commands.correlate.SharpenDataValues

shearView(RandomAccessible<T>, int, int) - Method in class net.imagej.ops.transform.TransformNamespace

Positive shear transform of a RandomAccessible using ShearTransform , i.e.

shearView(RandomAccessible<T>, Interval, int, int) - Method in class net.imagej.ops.transform.TransformNamespace

Positive shear transform of a RandomAccessible using ShearTransform , i.e.

ShearViewInterval<T> - Class in net.imagej.ops.transform.shearView

Wraps the Views.shear(RandomAccessible, Interval, int, int) method.

ShearViewInterval() - Constructor for class net.imagej.ops.transform.shearView.ShearViewInterval

shiftKeyDown() - Method in class net.imagej.legacy.IJ1Helper

Ask ImageJ 1.x whether it thinks whether the Shift key is held down.

shortName() - Method in interface net.imagej.types.DataType

A short name useful for displaying to user.

shortName() - Method in class net.imagej.types.DataType128BitSignedComplexFloat

shortName() - Method in class net.imagej.types.DataType12BitUnsignedInteger

shortName() - Method in class net.imagej.types.DataType16BitSignedInteger

shortName() - Method in class net.imagej.types.DataType16BitUnsignedInteger

shortName() - Method in class net.imagej.types.DataType1BitUnsignedInteger

shortName() - Method in class net.imagej.types.DataType32BitSignedFloat

shortName() - Method in class net.imagej.types.DataType32BitSignedInteger

shortName() - Method in class net.imagej.types.DataType32BitUnsignedInteger

shortName() - Method in class net.imagej.types.DataType64BitSignedComplexFloat

shortName() - Method in class net.imagej.types.DataType64BitSignedFloat

shortName() - Method in class net.imagej.types.DataType64BitSignedInteger

shortName() - Method in class net.imagej.types.DataType8BitSignedInteger

shortName() - Method in class net.imagej.types.DataType8BitUnsignedInteger

shortName() - Method in class net.imagej.types.DataTypeBoolean

shortName() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat

shortName() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat

shortName() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger

ShortTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.ShortTableToResultsTable

shouldKeepURL() - Method in class net.imagej.updater.UpdateSite

shouldRemindLater() - Static method in class net.imagej.updater.UpToDate

show() - Static method in class net.imagej.launcher.SplashScreen

show() - Method in class net.imagej.legacy.ui.LegacyUI

show(Display<?>) - Method in class net.imagej.legacy.ui.LegacyUI

show(String) - Method in class net.imagej.matlab.ImageJMATLABCommands

Take an array variable in MATLAB and attempt to display it as a Dataset in ImageJ

show() - Method in class net.imagej.patcher.HeadlessGenericDialog

show(Diff.Mode) - Method in class net.imagej.ui.swing.updater.DiffFile

Switch to a different diff mode.

show(Runnable) - Method in class net.imagej.ui.swing.updater.DiffFile

Show a different diff.

show(List<String>) - Method in class net.imagej.updater.CommandLine

show(String) - Method in class net.imagej.updater.CommandLine

show(FileObject) - Method in class net.imagej.updater.CommandLine

showChanges - Variable in class net.imagej.ui.swing.updater.UpdaterFrame

showContextMenu(String, Display<?>, int, int) - Method in class net.imagej.legacy.ui.LegacyUI

showDialog() - Method in class imagej.patcher.HeadlessGenericDialog

Deprecated.

showDialog() - Method in class net.imagej.patcher.HeadlessGenericDialog

showDiff(String, URL, URL, Diff.Mode) - Method in class net.imagej.updater.Diff

Show the differences between remote and local versions of a file.

showFileDetails(FileObject) - Method in class net.imagej.ui.swing.updater.FileDetails

showHelp() - Method in class imagej.patcher.HeadlessGenericDialog

Deprecated.

showHelp() - Method in class net.imagej.patcher.HeadlessGenericDialog

ShowInfo - Class in net.imagej.plugins.commands.misc

Returns a multiline string containing metadata information about a given ImageDisplay.

ShowInfo() - Constructor for class net.imagej.plugins.commands.misc.ShowInfo

ShowLUT - Class in net.imagej.plugins.commands.display

This class adapted from legacy ImageJ's LutViewer class.

ShowLUT() - Constructor for class net.imagej.plugins.commands.display.ShowLUT

ShowLUTAsTable - Class in net.imagej.plugins.commands.display

Loads the current ImageDisplay's color table into a ResultsTable.

ShowLUTAsTable() - Constructor for class net.imagej.plugins.commands.display.ShowLUTAsTable

showMessage(String, String) - Method in class net.imagej.legacy.IJ1Helper

showMessageBox(Component, String, int) - Static method in class net.imagej.ui.swing.updater.SwingTools

showMessageWithCancel(String, String) - Method in class net.imagej.legacy.IJ1Helper

shownByDefault() - Method in class net.imagej.updater.FilesCollection

showOrHide() - Method in class net.imagej.ui.swing.updater.UpdaterFrame

showProgress(double) - Method in class imagej.patcher.LegacyHooks

Deprecated.

Updates the progress bar, where 0 <= progress <= 1.0.

showProgress(int, int) - Method in class imagej.patcher.LegacyHooks

Deprecated.

Updates the progress bar, where the length of the bar is set to ( currentValue + 1) / finalValue of the maximum bar length.

showProgress(double) - Method in class net.imagej.patcher.LegacyHooks

Updates the progress bar, where 0 <= progress <= 1.0.

showProgress(int, int) - Method in class net.imagej.patcher.LegacyHooks

Updates the progress bar, where the length of the bar is set to (currentValue + 1) / finalValue of the maximum bar length.

showPrompt(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface

showQuestion(Component, String, String) - Static method in class net.imagej.ui.swing.updater.SwingTools

showStatus(String) - Method in class imagej.patcher.LegacyHooks

Deprecated.

Shows a status message.

showStatus(String) - Method in class net.imagej.patcher.LegacyHooks

Shows a status message.

showStatus(String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface

showStatus(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface

showStatus(String) - Method in class net.imagej.updater.util.UpdaterUserInterface

showStatus(String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface

showYesNoQuestion(String, String) - Method in class net.imagej.ui.swing.updater.SitesDialog

showYesNoQuestion(Component, String, String) - Static method in class net.imagej.ui.swing.updater.SwingTools

shuffle(int[], Random) - Static method in class net.imagej.ops.coloc.ColocUtil

Fisher-Yates shuffle.

shuffleBlocks() - Method in class net.imagej.ops.coloc.ShuffledView

shuffleBlocks(long) - Method in class net.imagej.ops.coloc.ShuffledView

ShuffledView<T> - Class in net.imagej.ops.coloc

Randomly shuffles an image blockwise.

ShuffledView(RandomAccessibleInterval<T>, int[], long) - Constructor for class net.imagej.ops.coloc.ShuffledView

shutDown() - Static method in class net.imagej.legacy.SingleInstance

Clean up remote objects

sideLength(int) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper

sideLength(int) - Method in interface net.imagej.omero.roi.rectangle.OMERORectangle

sigma(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, Double, Double) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "sigma" filter operation on the given arguments.

sigma(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, T>, Double, Double) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "sigma" filter operation on the given arguments.

SigmaFilterOp<T,V> - Interface in net.imagej.ops.filter.sigma

A typed "sigma" filter.

signum(double) - Method in class net.imagej.ops.math.MathNamespace

signum(float) - Method in class net.imagej.ops.math.MathNamespace

signum(O, I) - Method in class net.imagej.ops.math.MathNamespace

Signum() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Signum

simpleMerge(TriangularFacet) - Method in class net.imagej.ops.geom.geom3d.mesh.Horizon

Merges another facet to this facet.

simpleString(CommandInfo) - Static method in class net.imagej.ops.OpUtils

Similar to OpUtils.opString(ModuleInfo) but prints a cleaner, more abstract representation of the Op method call in the format return <= baseOp(param1, param2).

simplify(Mesh, float, float) - Static method in class net.imagej.mesh.Meshes

Simplifies a given mesh.

sin(double) - Method in class net.imagej.ops.math.MathNamespace

sin(O, I) - Method in class net.imagej.ops.math.MathNamespace

Sin() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Sin

sinc(O, I) - Method in class net.imagej.ops.math.MathNamespace

Sinc() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Sinc

sincPi(O, I) - Method in class net.imagej.ops.math.MathNamespace

SincPi() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.SincPi

SingleInputPreprocessor<T> - Class in net.imagej.display.process

Base class for preprocessors that populate single input parameters.

SingleInputPreprocessor(Class<T>) - Constructor for class net.imagej.display.process.SingleInputPreprocessor

SingleInstance - Class in net.imagej.legacy

This class tries to contact another instance on the same machine, started by the current user.

SingleInstance(int, LogService, IJ1Helper) - Constructor for class net.imagej.legacy.SingleInstance

SingleInstanceArgument - Class in net.imagej.legacy

Handles arguments relating to the single instance listener feature of ImageJ 1.x.

SingleInstanceArgument() - Constructor for class net.imagej.legacy.SingleInstanceArgument

sinh(double) - Method in class net.imagej.ops.math.MathNamespace

sinh(O, I) - Method in class net.imagej.ops.math.MathNamespace

Sinh() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Sinh

sites - Variable in class net.imagej.ui.swing.updater.SitesDialog

SitesDialog - Class in net.imagej.ui.swing.updater

The dialog in which the user can choose which update sites to follow.

SitesDialog(UpdaterFrame, FilesCollection) - Constructor for class net.imagej.ui.swing.updater.SitesDialog

SitesDialog.DataModel - Class in net.imagej.ui.swing.updater

size() - Method in class net.imagej.DefaultDataset

size() - Method in class net.imagej.ImgPlus

size() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

size() - Method in class net.imagej.legacy.convert.ResultsTableWrapper

size() - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper

size() - Method in class net.imagej.legacy.convert.TableListWrapper

size() - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles

size() - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

size() - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles

size() - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices

size() - Method in class net.imagej.mesh.nio.BufferMesh.Triangles

size() - Method in class net.imagej.mesh.nio.BufferMesh.Vertices

size() - Method in interface net.imagej.mesh.Triangles

Number of triangles in the collection.

size() - Method in interface net.imagej.mesh.Vertices

Number of vertices in the collection.

size() - Method in class net.imagej.omero.LazyTableList

size() - Method in class net.imagej.omero.legacy.LazyOverlay

size(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

size(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

size(IterableInterval<?>) - Method in class net.imagej.ops.geom.GeomNamespace

size(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

size() - Method in class net.imagej.ops.slice.SlicesII

size(IterableInterval<T>) - Method in class net.imagej.ops.stats.StatsNamespace

size(O, IterableInterval<T>) - Method in class net.imagej.ops.stats.StatsNamespace

size(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

size(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

size() - Method in class net.imagej.table.ResultsImg

sizeConvexHull(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

sizeConvexHull(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

sizeConvexHull(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

sizeConvexHull(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

SizeII - Class in net.imagej.ops.geom

Generic implementation of Ops.Geometric.Size.

SizeII() - Constructor for class net.imagej.ops.geom.SizeII

sizeToString(long) - Static method in class net.imagej.ui.swing.updater.UpdaterFrame

skew() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo

skewness(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

skewness(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

skip - Static variable in class net.imagej.updater.util.FilterManifest

skip(long) - Method in class net.imagej.updater.util.SkipHashedLines

SkipHashedLines - Class in net.imagej.updater.util

A helper class for the Checksummer.

SkipHashedLines(InputStream) - Constructor for class net.imagej.updater.util.SkipHashedLines

skipShow() - Method in class net.imagej.updater.util.StderrProgress

slice(String[], int) - Static method in class net.imagej.launcher.ClassLauncher

slice(String[], int, int) - Static method in class net.imagej.launcher.ClassLauncher

slice(RandomAccessibleInterval<O>, RandomAccessibleInterval, UnaryComputerOp<RandomAccessibleInterval, RandomAccessibleInterval<O>>, int...) - Method in interface net.imagej.ops.OpEnvironment

Executes the "slicewise" operation on the given arguments.

slice(RandomAccessibleInterval<O>, RandomAccessibleInterval, UnaryComputerOp<RandomAccessibleInterval, RandomAccessibleInterval<O>>, int[], boolean) - Method in interface net.imagej.ops.OpEnvironment

Executes the "slicewise" operation on the given arguments.

SliceOp<I,O> - Interface in net.imagej.ops.slice

A typed "slice" function.

SliceRAI2RAI<I,O> - Class in net.imagej.ops.slice

SliceOp implementation for RandomAccessibleInterval input and RandomAccessibleInterval output.

SliceRAI2RAI() - Constructor for class net.imagej.ops.slice.SliceRAI2RAI

slices(RandomAccessibleInterval<T>, int) - Static method in class net.imagej.notebook.chart.Charts

SlicesII<T> - Class in net.imagej.ops.slice

Helper class to iterate through subsets of RandomAccessibleIntervals (e.g.

SlicesII(RandomAccessibleInterval<T>, int[], boolean) - Constructor for class net.imagej.ops.slice.SlicesII

SlicesII(RandomAccessibleInterval<T>, int[]) - Constructor for class net.imagej.ops.slice.SlicesII

SliceUtils - Class in net.imagej.ops.slice

SliceUtils() - Constructor for class net.imagej.ops.slice.SliceUtils

slope(double, double, double, double) - Static method in class net.imagej.axis.DefaultLinearAxis

Returns the slope of the line connecting two points.

smallestEnclosingBoundingBox(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

smallestEnclosingBoundingBox(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

SmoothDataValues - Class in net.imagej.plugins.commands.correlate

Implements legacy ImageJ's Smooth plugin functionality

SmoothDataValues() - Constructor for class net.imagej.plugins.commands.correlate.SmoothDataValues

sobel(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.FilterNamespace

sobel(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.FilterNamespace

SobelRAI<T extends RealType<T>> - Class in net.imagej.ops.filter.sobel

Sobel filter implementation using separated sobel kernel.

SobelRAI() - Constructor for class net.imagej.ops.filter.sobel.SobelRAI

SOLID_LINE_STYLE - Static variable in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter

solidity(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

solidity(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

solidity(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

solidity(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

solidLineStyle - Static variable in class net.imagej.options.OptionsOverlay

sort() - Method in class net.imagej.display.OverlayInfoList

sort(int[], IntComparator) - Static method in class net.imagej.ops.coloc.IntArraySorter

sort() - Method in class net.imagej.ops.coloc.MergeSort

Sorts the MergeSort.data array.

sort() - Method in class net.imagej.updater.FilesCollection

source - Variable in class net.imagej.updater.UploadableFile

Sourced - Interface in net.imagej

Interface for classes who track their source.

SourceOptimizedCompositeXYProjector<A,S extends RandomAccessibleInterval<A> & IterableInterval<A>,T extends RandomAccessibleInterval<ARGBType> & IterableInterval<ARGBType>> - Class in net.imagej.display

As CompositeXYProjector but uses a source that is both a RandomAccessibleInterval and an IterableInterval, and a RandomAccessibleInterval target.

SourceOptimizedCompositeXYProjector(S, T, ArrayList<Converter<A, ARGBType>>, int) - Constructor for class net.imagej.display.SourceOptimizedCompositeXYProjector

SourceSearchActionFactory - Class in net.imagej.legacy.search

Search action for viewing the source code of a SciJava module.

SourceSearchActionFactory() - Constructor for class net.imagej.legacy.search.SourceSearchActionFactory

SpaceUtils - Class in net.imagej.space

Utility methods for working with EuclideanSpace, particularly TypedSpace.

spareness(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

spareness(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

SpecialOp - Interface in net.imagej.ops.special

A special operation is one intended to be used repeatedly from other ops.

SpecialOp.Flavor - Enum in net.imagej.ops.special

An enumeration of the primary kinds of special ops.

SpectralComposite - Class in net.imagej.plugins.commands.display

Creates a series of lookup tables according to the given range of wavelengths, compositing them together to produce the final visualization.

SpectralComposite() - Constructor for class net.imagej.plugins.commands.display.SpectralComposite

SPECTRUM - Static variable in class net.imagej.display.ColorTables

sphericity(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

sphericity(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

SplashScreen - Class in net.imagej.launcher

Application splash screen.

SplashScreen() - Constructor for class net.imagej.launcher.SplashScreen

SplitChannelsContext - Class in net.imagej.plugins.commands.restructure

Context menu command for Split Channels legacy command.

SplitChannelsContext() - Constructor for class net.imagej.plugins.commands.restructure.SplitChannelsContext

SplitChannelsContextMonitor - Class in net.imagej.plugins.commands.restructure

Service that monitors context for the SplitChannelsContext plugin.

SplitChannelsContextMonitor() - Constructor for class net.imagej.plugins.commands.restructure.SplitChannelsContextMonitor

SprayCanTool - Class in net.imagej.plugins.tools

Implements a spray can drawing tool

SprayCanTool() - Constructor for class net.imagej.plugins.tools.SprayCanTool

SprayCanToolConfig - Class in net.imagej.plugins.tools

Implements the configuration code for SprayCanTool.

SprayCanToolConfig() - Constructor for class net.imagej.plugins.tools.SprayCanToolConfig

sqr(O, I) - Method in class net.imagej.ops.math.MathNamespace

Sqr() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Sqr

sqrt(double) - Method in class net.imagej.ops.math.MathNamespace

sqrt(O, I) - Method in class net.imagej.ops.math.MathNamespace

Sqrt() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Sqrt

sqrt(PreciseFixedFloatType) - Static method in class net.imagej.types.PreciseFixedFloatType

Uses Newton Raphson to compute the square root of a BigDecimal.

SquareDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign

Fills an output Dataset by taking the square of the data values of an input Dataset.

SquareDataValues() - Constructor for class net.imagej.plugins.commands.assign.SquareDataValues

squareIntegral(RandomAccessibleInterval<RealType>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.ImageNamespace

squareIntegral(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.ImageNamespace

SquareIntegralImg> - Class in net.imagej.ops.image.integral

n-dimensional squared integral image that stores sums using RealType.

SquareIntegralImg() - Constructor for class net.imagej.ops.image.integral.SquareIntegralImg

SquareRootDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign

Fills an output Dataset by taking the square root of the data values of an input Dataset.

SquareRootDataValues() - Constructor for class net.imagej.plugins.commands.assign.SquareRootDataValues

SSH_HOST - Static variable in class net.imagej.updater.util.UpdaterUtil

SSHFileUploader - Class in net.imagej.plugins.uploaders.ssh

Uploads files to an update server using SSH.

SSHFileUploader() - Constructor for class net.imagej.plugins.uploaders.ssh.SSHFileUploader

SSLUtils - Class in net.imagej.omero

SSLUtils() - Constructor for class net.imagej.omero.SSLUtils

stackCorners(EulerCorrection.Traverser) - Static method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection

Counts the foreground voxels in stack corners

stackEdges(EulerCorrection.Traverser) - Static method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection

Count the foreground voxels on the edges lining the stack

stackFaces(EulerCorrection.Traverser) - Static method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection

Count the foreground voxels on the faces that line the stack

stackHistogram() - Method in class net.imagej.plugins.commands.display.interactive.Threshold

stackView(List<? extends RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.transform.TransformNamespace

Form a (n+1)-dimensional RandomAccessibleInterval by stacking n-dimensional RandomAccessibleIntervals.

stackView(List<? extends RandomAccessibleInterval<T>>, StackView.StackAccessMode) - Method in class net.imagej.ops.transform.TransformNamespace

Form a (n+1)-dimensional RandomAccessibleInterval by stacking n-dimensional RandomAccessibleIntervals.

StackViewWithAccessMode<T> - Class in net.imagej.ops.transform.stackView

Wraps the Views#stack(StackAccessMode, List) method.

StackViewWithAccessMode() - Constructor for class net.imagej.ops.transform.stackView.StackViewWithAccessMode

stageForUninstall(FilesCollection) - Method in class net.imagej.updater.FileObject

stageForUpdate(FilesCollection, boolean) - Method in class net.imagej.updater.FileObject

stageForUpload(FilesCollection, String) - Method in class net.imagej.updater.FileObject

start() - Method in class net.imagej.animation.Animation

Starts the animation.

start(ImageDisplay) - Method in interface net.imagej.animation.AnimationService

Starts animation for the given ImageDisplay.

start(ImageDisplay) - Method in class net.imagej.animation.DefaultAnimationService

start() - Static method in class net.imagej.matlab.ImageJMATLAB

Starts a new instance of ImageJ from MATLAB.

start(boolean) - Static method in class net.imagej.matlab.ImageJMATLAB

Starts a new instance of ImageJ from MATLAB with or without verbose mode.

start(boolean, String...) - Static method in class net.imagej.matlab.ImageJMATLAB

Starts a new instance of ImageJ from MATLAB.

start(ClassPool) - Method in class net.imagej.patcher.MemoryProfiler

start(ClassPool) - Method in class net.imagej.patcher.PerformanceProfiler

start(String...) - Method in class net.imagej.server.DefaultImageJServerService

start(String...) - Method in interface net.imagej.server.ImageJServerService

Launches an instance of the ImageJ Server.

start() - Method in class net.imagej.updater.Installer

start(Downloadable) - Method in class net.imagej.updater.util.Downloader

start(Iterable<Downloadable>) - Method in class net.imagej.updater.util.Downloader

start() - Method in class net.imagej.updater.XMLFileDownloader

start(boolean) - Method in class net.imagej.updater.XMLFileDownloader

StartAnimation - Class in net.imagej.plugins.commands.animation

Plugin for toggling an ImageDisplay's running animation.

StartAnimation() - Constructor for class net.imagej.plugins.commands.animation.StartAnimation

startDocument() - Method in class net.imagej.updater.POMParser

startDocument() - Method in class net.imagej.updater.XMLFileReader

startElement(String, String, String, Attributes) - Method in class net.imagej.updater.POMParser

startElement(String, String, String, Attributes) - Method in class net.imagej.updater.XMLFileReader

startingValue - Variable in class net.imagej.server.WebCommandModuleItem

startProfiling(String, String...) - Static method in class net.imagej.patcher.PerformanceProfiler

Convenience method to call in your main(String[]) method.

startRecording(String) - Method in class net.imagej.legacy.IJ1Helper

Begins recording of a command.

StartServer - Class in net.imagej.server.commands

Starts the ImageJ Server, if one is not already running.

StartServer() - Constructor for class net.imagej.server.commands.StartServer

startsWith(String) - Method in class net.imagej.updater.FilesCollection

startsWith(String...) - Method in class net.imagej.updater.FilesCollection

startWith(Overlay) - Method in class net.imagej.overlay.CompositeOverlay

StatisticsDemo - Class in net.imagej.plugins.commands.debug

Shows how to use the StatisticsService.

StatisticsDemo() - Constructor for class net.imagej.plugins.commands.debug.StatisticsDemo

stats() - Method in interface net.imagej.ops.OpEnvironment

Gateway into ops of the "stats" namespace.

StatsNamespace - Class in net.imagej.ops.stats

The stats namespace contains operations related to numerical statistics.

StatsNamespace() - Constructor for class net.imagej.ops.stats.StatsNamespace

StatsOp<I,O> - Interface in net.imagej.ops.stats

marker interface for statistic ops.

status() - Method in class net.imagej.legacy.LegacyService

Gets the StatusService associated with this LegacyService.

status - Variable in class net.imagej.ops.filter.AbstractIterativeFFTFilterC

statusService - Variable in class net.imagej.ui.swing.updater.SwingUserInterface

stdDev(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

stdDev(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

stdDev() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo

StderrInterface() - Constructor for class net.imagej.updater.util.UpdaterUserInterface.StderrInterface

StderrLogService - Class in net.imagej.updater.util

Deprecated.
Use StderrLogService instead.

StderrLogService() - Constructor for class net.imagej.updater.util.StderrLogService

Deprecated.

StderrProgress - Class in net.imagej.updater.util

A default implementation of the Progress interface.

StderrProgress() - Constructor for class net.imagej.updater.util.StderrProgress

StderrProgress(int) - Constructor for class net.imagej.updater.util.StderrProgress

step(O, I) - Method in class net.imagej.ops.math.MathNamespace

Step() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Step

STLMeshIO - Class in net.imagej.mesh.io.stl

A plugin for reading and writing STL files.

STLMeshIO() - Constructor for class net.imagej.mesh.io.stl.STLMeshIO

stop() - Method in class net.imagej.animation.Animation

Stops the animation.

stop(ImageDisplay) - Method in interface net.imagej.animation.AnimationService

Stops animation for the given ImageDisplay.

stop(ImageDisplay) - Method in class net.imagej.animation.DefaultAnimationService

stop() - Static method in class net.imagej.patcher.JavaAgent

stop() - Method in class net.imagej.server.ImageJServer

stop() - Method in class net.imagej.server.resources.AdminResource

Stop the imagej-server.

stopAll() - Method in interface net.imagej.animation.AnimationService

Stops all animations.

stopAll() - Method in class net.imagej.animation.DefaultAnimationService

StopAllAnimations - Class in net.imagej.plugins.commands.animation

Plugin for terminating running animations of all ImageDisplays.

StopAllAnimations() - Constructor for class net.imagej.plugins.commands.animation.StopAllAnimations

StopAnimation - Class in net.imagej.plugins.commands.animation

Plugin for terminating an ImageDisplay's running animation.

StopAnimation() - Constructor for class net.imagej.plugins.commands.animation.StopAnimation

StopServer - Class in net.imagej.server.commands

Stops the ImageJ Server, if one is running.

StopServer() - Constructor for class net.imagej.server.commands.StopServer

StringAndFile(String, File) - Constructor for class net.imagej.updater.Checksummer.StringAndFile

stringfieldIndex - Variable in class imagej.patcher.HeadlessGenericDialog

Deprecated.

stringfieldIndex - Variable in class net.imagej.patcher.HeadlessGenericDialog

strings - Variable in class imagej.patcher.HeadlessGenericDialog

Deprecated.

strings - Variable in class net.imagej.patcher.HeadlessGenericDialog

StringToImagePlusConverter - Class in net.imagej.legacy.convert

Converts a string to the corresponding ImagePlus object.

StringToImagePlusConverter() - Constructor for class net.imagej.legacy.convert.StringToImagePlusConverter

StringToImagePlusConverter.ImageTitle - Class in net.imagej.legacy.convert

Adapter for ImagePlus that emits the image title when StringToImagePlusConverter.ImageTitle.toString() is called.

stripNamespace(String) - Static method in class net.imagej.ops.OpUtils

Gets the simple portion (without namespace) of the given op name.

stripPrefix(String, String) - Static method in class net.imagej.updater.util.UpdaterUtil

stripSuffix(String, String) - Static method in class net.imagej.updater.util.UpdaterUtil

styled(String, AttributeSet) - Method in class net.imagej.ui.swing.updater.DiffView

Add stylish text.

styled(int, String, AttributeSet) - Method in class net.imagej.ui.swing.updater.DiffView

Insert some stylish text.

styled(String, AttributeSet) - Method in class net.imagej.ui.swing.updater.FileDetails

sub(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator

sub(Output<T>, Output<T>) - Method in class net.imagej.tensorflow.GraphBuilder

sub(Output<T>, Output<T>, String) - Method in class net.imagej.tensorflow.GraphBuilder

sub(BigComplex, BigComplex) - Method in class net.imagej.types.BigComplex

Set self to the result of subtraction between two BigComplex values.

sub(BigComplex) - Method in class net.imagej.types.BigComplex

Subtracts another BigComplex value from self.

sub(PreciseFixedComplexFloatType, PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType

sub(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType

sub(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType

sub(PreciseFixedFloatType, PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType

sub(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType

subList(int, int) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

subList(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

subList(int, int) - Method in class net.imagej.legacy.convert.TableListWrapper

subList(int, int) - Method in class net.imagej.omero.LazyTableList

SubsampleIntervalViewStepsForDims<T> - Class in net.imagej.ops.transform.subsampleView

Wraps the Views.subsample(RandomAccessible, long[]) method while preserving interval bounds.

SubsampleIntervalViewStepsForDims() - Constructor for class net.imagej.ops.transform.subsampleView.SubsampleIntervalViewStepsForDims

subsampleView(RandomAccessible<T>, long) - Method in class net.imagej.ops.transform.TransformNamespace

Sample only every step^th value of a source RandomAccessible.

subsampleView(RandomAccessibleInterval<T>, long) - Method in class net.imagej.ops.transform.TransformNamespace

Sample only every step^th value of a source RandomAccessible while preserving interval bounds.

subsampleView(RandomAccessible<T>, long...) - Method in class net.imagej.ops.transform.TransformNamespace

Sample only every step_d^th value of a source RandomAccessible.

subsampleView(RandomAccessibleInterval<T>, long...) - Method in class net.imagej.ops.transform.TransformNamespace

Sample only every step_d^th value of a source RandomAccessible while preserving interval bounds.

SubsampleViewStepsForDims<T> - Class in net.imagej.ops.transform.subsampleView

Wraps the Views.subsample(RandomAccessible, long[]) method.

SubsampleViewStepsForDims() - Constructor for class net.imagej.ops.transform.subsampleView.SubsampleViewStepsForDims

subscribeEvents(Context) - Static method in class net.imagej.legacy.IJ1Helper

Subtract(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator

Subtract() - Constructor for class net.imagej.ops.math.BinaryRealTypeMath.Subtract

Subtract() - Constructor for class net.imagej.ops.math.ConstantToIIOutputII.Subtract

Subtract() - Constructor for class net.imagej.ops.math.ConstantToIIOutputRAI.Subtract

Subtract() - Constructor for class net.imagej.ops.math.IIToIIOutputII.Subtract

Subtract() - Constructor for class net.imagej.ops.math.IIToRAIOutputII.Subtract

subtract(ArrayImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace

subtract(ArrayImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace

subtract(ArrayImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace

subtract(ArrayImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace

subtract(ArrayImg<N, LongArray>, long) - Method in class net.imagej.ops.math.MathNamespace

subtract(ArrayImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace

subtract(double, double) - Method in class net.imagej.ops.math.MathNamespace

subtract(float, float) - Method in class net.imagej.ops.math.MathNamespace

subtract(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace

subtract(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace

subtract(int, int) - Method in class net.imagej.ops.math.MathNamespace

subtract(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace

subtract(IterableInterval<T>, IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace

subtract(IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace

subtract(IterableInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace

subtract(long, long) - Method in class net.imagej.ops.math.MathNamespace

subtract(O, I1, I2) - Method in class net.imagej.ops.math.MathNamespace

subtract(PlanarImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace

subtract(PlanarImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace

subtract(PlanarImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace

subtract(PlanarImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace

subtract(PlanarImg<N, A>, long) - Method in class net.imagej.ops.math.MathNamespace

subtract(PlanarImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace

subtract(RandomAccessibleInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace

subtract(T, T) - Method in class net.imagej.ops.math.MathNamespace

subtract(T, T, T) - Method in class net.imagej.ops.math.MathNamespace

Subtract() - Constructor for class net.imagej.ops.math.NumericTypeBinaryMath.Subtract

subtract() - Method in class net.imagej.plugins.commands.debug.ButtonDemo

subtract(BezierPath, BezierPath) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions

SubtractByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractByte

SubtractByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractByte

SubtractByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractByte

SubtractDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractDouble

SubtractDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractDouble

SubtractDouble() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractDouble

SubtractFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractFloat

SubtractFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractFloat

SubtractFloat() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractFloat

SubtractFromDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign

Fills an output Dataset by subtracting a user defined constant value from an input Dataset.

SubtractFromDataValues() - Constructor for class net.imagej.plugins.commands.assign.SubtractFromDataValues

SubtractInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractInt

SubtractInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractInt

SubtractInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractInt

SubtractLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractLong

SubtractLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractLong

SubtractLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractLong

SubtractShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractShort

SubtractShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractShort

SubtractShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractShort

SubtractUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedByte

SubtractUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedByte

SubtractUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedByte

SubtractUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedInt

SubtractUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedInt

SubtractUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedInt

SubtractUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedLong

SubtractUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedLong

SubtractUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedLong

SubtractUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedShort

SubtractUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedShort

SubtractUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedShort

sum(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

sum(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

sumAverage(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

sumAverage(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

sumEntropy(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

sumEntropy(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

summaryPanel - Variable in class net.imagej.ui.swing.updater.UpdaterFrame

sumOfInverses(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

sumOfInverses(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

sumOfLogs(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

sumOfLogs(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

sumOfSquares(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

sumOfSquares(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

sumVariance(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

sumVariance(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

support(Class<?>) - Static method in class net.imagej.server.mixins.Mixins

Checks if a given class will be supported, i.e.

supportedType(R) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter

supportedType(Roi) - Method in class net.imagej.legacy.convert.roi.box.RoiToBoxConverter

supportedType(OvalRoi) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiToEllipsoidConverter

supportedType(Line) - Method in class net.imagej.legacy.convert.roi.line.IJLineToLineConverter

supportedType(PointRoi) - Method in class net.imagej.legacy.convert.roi.point.PointRoiToRealPointCollectionConverter

supportedType(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiToPolygon2DConverter

supportedType(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToPolylineConverter

supportedType(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToRealMaskRealIntervalConverter

supportedType(Roi) - Method in class net.imagej.legacy.convert.roi.RoiToMaskIntervalConverter

supportedType(ShapeRoi) - Method in class net.imagej.legacy.convert.roi.ShapeRoiToMaskRealIntervalConverter

supportedType(R) - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate

supportedType(TextRoi) - Method in class net.imagej.omero.legacy.text.TextRoiToTextRoiWrapper

supports(BatchInput) - Method in class net.imagej.batch.input.DatasetBatchInputProvider

supports(Object) - Method in class net.imagej.legacy.LegacyCodeRunner

supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Batch

supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Debug

supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Eval

supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Filename

supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.IJPath

supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Macro

supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Port

supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Run

supports(SearchResult) - Method in class net.imagej.legacy.search.HelpSearchActionFactory

supports(SearchResult) - Method in class net.imagej.legacy.search.OpenTemplateSearchActionFactory

supports(SearchResult) - Method in class net.imagej.legacy.search.SourceSearchActionFactory

supports(LinkedList<String>) - Method in class net.imagej.legacy.SingleInstanceArgument

supports(File) - Method in class net.imagej.mesh.io.stl.STLMeshIO

supports(ConversionRequest) - Method in class net.imagej.ops.geom.geom2d.LabelRegionToPolygonConverter

supports(ConversionRequest) - Method in class net.imagej.ops.geom.geom3d.mesh.RAIToMeshConverter

supports(SearchResult) - Method in class net.imagej.ops.search.RunOpSearchActionFactory

supports(LinkedList<String>) - Method in class net.imagej.server.console.ServerArgument

supports(File) - Method in class net.imagej.ui.dnd.LUTFileDragAndDropHandler

supports(Tool) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter

supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter

supports(Tool) - Method in class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter

supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter

supports(Tool) - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter

supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter

supports(Tool) - Method in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter

supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter

supports(Tool) - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter

Determines whether the adapter is designed to work with the given tool.

supports(Overlay, Figure) - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter

Determines whether the adapter can handle a particular overlay, or overlay / figure combination.

supports(Tool) - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter

supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter

supports(Tool) - Method in class net.imagej.ui.swing.overlay.PointJHotDrawOverlay

supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.PointJHotDrawOverlay

supports(Tool) - Method in class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter

supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter

supports(Tool) - Method in class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter

supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter

supports(Tool) - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter

supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter

supports(Tool) - Method in class net.imagej.ui.swing.overlay.ThresholdJHotDrawAdapter

supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.ThresholdJHotDrawAdapter

supports(WidgetModel) - Method in class net.imagej.ui.swing.widget.SwingColorTableWidget

supports(WidgetModel) - Method in class net.imagej.ui.swing.widget.SwingDimSelectionWidget

supports(WidgetModel) - Method in class net.imagej.ui.swing.widget.SwingHistogramWidget

supportsDisplay(Display<?>) - Method in class net.imagej.ui.dnd.LUTFileDragAndDropHandler

supportsGPU - Variable in class net.imagej.tensorflow.TensorFlowVersion

supportsHandleInteraction() - Method in class net.imagej.ui.swing.overlay.ToolDelegator

supportsHTTPS() - Static method in class net.imagej.updater.util.HTTPSUtil

supportsOpen(String) - Method in class net.imagej.lut.io.LUTIOPlugin

supportsOpen(String) - Method in class net.imagej.mesh.io.ply.PLYMeshIO

supportsOpen(String) - Method in class net.imagej.mesh.io.stl.STLMeshIO

supportsOpen(String) - Method in class net.imagej.mesh.io.xyz.XYZPointsIO

supportsOpen(String) - Method in class net.imagej.server.external.DefaultTableIOPlugin

supportsSave(String) - Method in class net.imagej.mesh.io.ply.PLYMeshIO

supportsSave(String) - Method in class net.imagej.mesh.io.stl.STLMeshIO

supportsSave(String) - Method in class net.imagej.server.external.DefaultTableIOPlugin

supportsURLProtocol(String) - Static method in class net.imagej.updater.util.HTTPSUtil

suppressIJ1ScriptDiscovery() - Method in class net.imagej.patcher.LegacyEnvironment

Disallows ImageJ 1.x from discovering macros and scripts to put into the menu structure.

SwingAngleTool - Class in net.imagej.ui.swing.tools

Swing/JHotDraw implementation of angle tool.

SwingAngleTool() - Constructor for class net.imagej.ui.swing.tools.SwingAngleTool

SwingAuthenticator - Class in net.imagej.ui.swing.updater

TODO

SwingAuthenticator() - Constructor for class net.imagej.ui.swing.updater.SwingAuthenticator

SwingColorBar - Class in net.imagej.ui.swing

A widget for displaying a ColorTable as a bar.

SwingColorBar() - Constructor for class net.imagej.ui.swing.SwingColorBar

SwingColorBar(int) - Constructor for class net.imagej.ui.swing.SwingColorBar

SwingColorBar(ColorTable) - Constructor for class net.imagej.ui.swing.SwingColorBar

SwingColorBar(ColorTable, int) - Constructor for class net.imagej.ui.swing.SwingColorBar

SwingColorTableWidget - Class in net.imagej.ui.swing.widget

Render a ColorTable in Swing.

SwingColorTableWidget() - Constructor for class net.imagej.ui.swing.widget.SwingColorTableWidget

SwingDimSelectionWidget - Class in net.imagej.ui.swing.widget

Default Swing implementation of dimension selector widget.

SwingDimSelectionWidget() - Constructor for class net.imagej.ui.swing.widget.SwingDimSelectionWidget

SwingEllipseTool - Class in net.imagej.ui.swing.tools

Swing/JHotDraw implementation of ellipse tool.

SwingEllipseTool() - Constructor for class net.imagej.ui.swing.tools.SwingEllipseTool

SwingHistogramWidget - Class in net.imagej.ui.swing.widget

Render a HistogramBundle in Swing.

SwingHistogramWidget() - Constructor for class net.imagej.ui.swing.widget.SwingHistogramWidget

SwingImageDisplayPanel - Class in net.imagej.ui.swing.viewer.image

Swing implementation of image display panel.

SwingImageDisplayPanel(SwingImageDisplayViewer, DisplayWindow) - Constructor for class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel

SwingImageDisplayViewer - Interface in net.imagej.ui.swing.viewer.image

Interface for Swing-based image display viewers.

SwingLineTool - Class in net.imagej.ui.swing.tools

Swing/JHotDraw implementation of line tool.

SwingLineTool() - Constructor for class net.imagej.ui.swing.tools.SwingLineTool

SwingMdiImageDisplayViewer - Class in net.imagej.ui.swing.mdi.viewer

Multiple Document Interface implementation of Swing image display viewer.

SwingMdiImageDisplayViewer() - Constructor for class net.imagej.ui.swing.mdi.viewer.SwingMdiImageDisplayViewer

SwingOverlayManager - Class in net.imagej.ui.swing.overlay

Overlay Manager Swing UI

SwingOverlayManager(Context) - Constructor for class net.imagej.ui.swing.overlay.SwingOverlayManager

Creates a JList to list the overlays.

SwingPointTool - Class in net.imagej.ui.swing.tools

Swing/JHotDraw implementation of point tool.

SwingPointTool() - Constructor for class net.imagej.ui.swing.tools.SwingPointTool

SwingPolygonTool - Class in net.imagej.ui.swing.tools

Swing/JHotDraw implementation of polygon/freehand tool.

SwingPolygonTool() - Constructor for class net.imagej.ui.swing.tools.SwingPolygonTool

SwingPolylineTool - Class in net.imagej.ui.swing.tools

Swing/JHotDraw implementation of multi-segmented line tool.

SwingPolylineTool() - Constructor for class net.imagej.ui.swing.tools.SwingPolylineTool

SwingRectangleTool - Class in net.imagej.ui.swing.tools

Swing/JHotDraw implementation of rectangle tool.

SwingRectangleTool() - Constructor for class net.imagej.ui.swing.tools.SwingRectangleTool

SwingSdiImageDisplayViewer - Class in net.imagej.ui.swing.sdi.viewer

Single Document Interface implementation of Swing image display viewer.

SwingSdiImageDisplayViewer() - Constructor for class net.imagej.ui.swing.sdi.viewer.SwingSdiImageDisplayViewer

SwingTextTool - Class in net.imagej.ui.swing.tools

Swing/JHotDraw implementation of text tool.

SwingTextTool() - Constructor for class net.imagej.ui.swing.tools.SwingTextTool

SwingTools - Class in net.imagej.ui.swing.updater

Helper functions to instantiated Swing components.

SwingTools() - Constructor for class net.imagej.ui.swing.updater.SwingTools

SwingUserInterface - Class in net.imagej.ui.swing.updater

TODO

SwingUserInterface(LogService, StatusService) - Constructor for class net.imagej.ui.swing.updater.SwingUserInterface

syncActiveImage(ImageDisplay) - Method in class net.imagej.legacy.IJ1Helper

syncActiveImage() - Method in class net.imagej.legacy.LegacyService

Ensures that the currently active ImagePlus matches the currently active ImageDisplay.

synchronize() - Method in class net.imagej.legacy.convert.roi.box.BoxWrapper

synchronize() - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidWrapper

synchronize() - Method in class net.imagej.legacy.convert.roi.line.LineWrapper

synchronize() - Method in interface net.imagej.legacy.convert.roi.MaskPredicateWrapper

Modify the associated MaskPredicate to match the "state" of this Roi.

synchronize() - Method in class net.imagej.legacy.convert.roi.point.PointMaskWrapper

synchronize() - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionWrapper

synchronize() - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DWrapper

synchronize() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineWrapper

synchronize() - Method in class net.imagej.legacy.convert.TableListWrapper

Synchronizes this and the source List<Table<?, ?>>.

synchronize() - Method in class net.imagej.omero.legacy.mask.OMEROMaskWrapper

synchronize() - Method in class net.imagej.omero.legacy.text.OMEROTextWrapper

synchronizeShapeData(ShapeData, ShapeData) - Static method in class net.imagej.omero.roi.ROIConverters

Synchronizes oldShape to be equivalent to updatedShape, with the exception of ID.

synchronizeShapeSettings(ShapeSettingsData, ShapeSettingsData) - Static method in class net.imagej.omero.roi.ROIConverters

Updates the oldSettings to be equivalent to updatedSettings.

SynchronizeWindows - Class in net.imagej.plugins.commands.display.interactive

Place holder for the future implementation of the Synchronize Windows command.

SynchronizeWindows() - Constructor for class net.imagej.plugins.commands.display.interactive.SynchronizeWindows

T

tab(Component, String, String, int, int, Container) - Static method in class net.imagej.ui.swing.updater.SwingTools

table - Variable in class net.imagej.ui.swing.updater.SitesDialog

table - Variable in class net.imagej.ui.swing.updater.UpdaterFrame

TABLE_PROPERTY - Static variable in interface net.imagej.table.TableService

tableChanged(TableModelEvent) - Method in class net.imagej.ui.swing.updater.UpdaterFrame

TableDemo - Class in net.imagej.plugins.commands.debug

A demonstration of the org.scijava.table and net.imagej.table packages.

TableDemo() - Constructor for class net.imagej.plugins.commands.debug.TableDemo

TableListWrapper - Class in net.imagej.legacy.convert

TableListWrapper(List<Table<?, ?>>, ConvertService) - Constructor for class net.imagej.legacy.convert.TableListWrapper

tableModel - Variable in class net.imagej.ui.swing.updater.SitesDialog

TableService - Interface in net.imagej.table

Service for working with Tables.

TableToHTMLConverter - Class in net.imagej.notebook.table

Converter from Table to HTMLObject.

TableToHTMLConverter() - Constructor for class net.imagej.notebook.table.TableToHTMLConverter

TableToResultsTableConverters - Class in net.imagej.legacy.convert

Converters which convert Table to ResultsTable.

TableToResultsTableConverters.AbstractTableToResultsTableConverter<A extends Table<?,?>> - Class in net.imagej.legacy.convert

Abstract base class for converting Table to ResultsTable.

TableToResultsTableConverters.ByteTableToResultsTable - Class in net.imagej.legacy.convert

Converts a ByteTable to a ResultsTable.

TableToResultsTableConverters.FloatTableToResultsTable - Class in net.imagej.legacy.convert

Converts a FloatTable to a ResultsTable.

TableToResultsTableConverters.GenericTableToResultsTable - Class in net.imagej.legacy.convert

Converts a GenericTable to a ResultsTable.

TableToResultsTableConverters.IntTableToResultsTable - Class in net.imagej.legacy.convert

Converts a IntTable to a ResultsTable.

TableToResultsTableConverters.LongTableToResultsTable - Class in net.imagej.legacy.convert

Converts a LongTable to a ResultsTable.

TableToResultsTableConverters.ResultsTableToResultsTable - Class in net.imagej.legacy.convert

Converts a DoubleTable to a ResultsTable.

TableToResultsTableConverters.ShortTableToResultsTable - Class in net.imagej.legacy.convert

Converts a ShortTable to a ResultsTable.

TableUnwrapper - Class in net.imagej.legacy.convert

Converts a TableWrapper to a Table, by unwrapping it.

TableUnwrapper() - Constructor for class net.imagej.legacy.convert.TableUnwrapper

TableUtils - Class in net.imagej.omero

Utility class for working with converting between ImageJ and OMERO tables.

tableWidth - Variable in class net.imagej.ui.swing.updater.SitesDialog.DataModel

TableWrapper - Class in net.imagej.legacy.convert

Wraps an Table as a ResultsTable.

TableWrapper(Table<?, ?>, ConvertService) - Constructor for class net.imagej.legacy.convert.TableWrapper

tamura() - Method in interface net.imagej.ops.OpEnvironment

Gateway into ops of the "tamura" namespace.

TamuraFeature,O extends RealType<O>> - Interface in net.imagej.ops.features.tamura2d

Marker interface for tamura features.

TamuraNamespace - Class in net.imagej.ops.features.tamura2d

Namespace for Tamura features

TamuraNamespace() - Constructor for class net.imagej.ops.features.tamura2d.TamuraNamespace

tan(double) - Method in class net.imagej.ops.math.MathNamespace

tan(O, I) - Method in class net.imagej.ops.math.MathNamespace

Tan() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Tan

tanh(double) - Method in class net.imagej.ops.math.MathNamespace

tanh(O, I) - Method in class net.imagej.ops.math.MathNamespace

Tanh() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Tanh

tensor(RandomAccessibleInterval<T>) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given image.

tensor(RandomAccessibleInterval<T>, int[]) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given image.

tensorByte(RandomAccessibleInterval<ByteType>) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given byte image.

tensorByte(RandomAccessibleInterval<ByteType>, int[]) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given byte image.

tensorByteDirect(RandomAccessibleInterval<ByteType>) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given byte image.

tensorDirect(RandomAccessibleInterval<T>) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given image.

tensorDouble(RandomAccessibleInterval<DoubleType>) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given double image.

tensorDouble(RandomAccessibleInterval<DoubleType>, int[]) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given double image.

tensorDoubleDirect(RandomAccessibleInterval<DoubleType>) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given double image.

tensorFloat(RandomAccessibleInterval<FloatType>) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given float image.

tensorFloat(RandomAccessibleInterval<FloatType>, int[]) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given float image.

tensorFloatDirect(RandomAccessibleInterval<FloatType>) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given float image.

TensorFlowLibraryManagementCommand - Class in net.imagej.tensorflow.ui

This command provides an interface for activating a specific Java TensorFlow version.

TensorFlowLibraryManagementCommand() - Constructor for class net.imagej.tensorflow.ui.TensorFlowLibraryManagementCommand

TensorFlowLibraryStatus - Class in net.imagej.tensorflow

The loading status of the TensorFlow native library.

TensorFlowService - Interface in net.imagej.tensorflow

Service for working with TensorFlow.

TensorFlowUtil - Class in net.imagej.tensorflow.util

Utility methods for dealing with the Java TensorFlow library

TensorFlowVersion - Class in net.imagej.tensorflow

A class describing the details of a specific TensorFlow version.

TensorFlowVersion(String, Boolean, String, String) - Constructor for class net.imagej.tensorflow.TensorFlowVersion

TensorFlowVersion(TensorFlowVersion) - Constructor for class net.imagej.tensorflow.TensorFlowVersion

tensorInt(RandomAccessibleInterval<IntType>) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given int image.

tensorInt(RandomAccessibleInterval<IntType>, int[]) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given int image.

tensorIntDirect(RandomAccessibleInterval<IntType>) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given int image.

tensorLong(RandomAccessibleInterval<LongType>) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given long image.

tensorLong(RandomAccessibleInterval<LongType>, int[]) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given long image.

tensorLongDirect(RandomAccessibleInterval<LongType>) - Static method in class net.imagej.tensorflow.Tensors

Creates a TensorFlow Tensor containing data from the given long image.

Tensors - Class in net.imagej.tensorflow

Utility class for working with TensorFlow Tensor objects.

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper

test(Localizable) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polygon2d.UnmodifiablePolygonRoiWrapper

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polyline.UnmodifiablePolylineRoiWrapper

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.ShapeRoiWrapper

test(RealLocalizable) - Method in class net.imagej.omero.legacy.text.OMEROText

test(RealLocalizable) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper

test(RealLocalizable) - Method in class net.imagej.omero.roi.ellipse.ClosedOMEROEllipse

test(RealLocalizable) - Method in class net.imagej.omero.roi.ellipse.OpenOMEROEllipse

test(RealLocalizable) - Method in interface net.imagej.omero.roi.line.OMEROLine

test(RealLocalizable) - Method in class net.imagej.omero.roi.mask.DefaultOMEROMask

The given RealLocalizable will be rounded to the nearest integer coordinates.

test(RealLocalizable) - Method in interface net.imagej.omero.roi.point.OMEROPoint

test(RealLocalizable) - Method in class net.imagej.omero.roi.polyshape.ClosedOMEROPolygon

test(RealLocalizable) - Method in class net.imagej.omero.roi.polyshape.DefaultOMEROPolygon

test(RealLocalizable) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyline

test(RealLocalizable) - Method in class net.imagej.omero.roi.polyshape.OpenOMEROPolygon

test(RealLocalizable) - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMask

test(RealLocalizable) - Method in class net.imagej.omero.roi.project.ProjectedOMERORealMask

test(RealLocalizable) - Method in class net.imagej.omero.roi.rectangle.ClosedOMERORectangle

test(RealLocalizable) - Method in class net.imagej.omero.roi.rectangle.OpenOMERORectangle

test(RealLocalizable) - Method in class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealInterval

testPosition(TypedAxis, double) - Method in interface net.imagej.omero.roi.OMERORealMask

testPosition(TypedAxis, double) - Method in interface net.imagej.omero.roi.OMERORealMaskRealInterval

texCoords() - Method in class net.imagej.mesh.nio.BufferMesh.Vertices

textArea1 - Variable in class imagej.patcher.HeadlessGenericDialog

Deprecated.

textArea1 - Variable in class net.imagej.patcher.HeadlessGenericDialog

textArea2 - Variable in class imagej.patcher.HeadlessGenericDialog

Deprecated.

textArea2 - Variable in class net.imagej.patcher.HeadlessGenericDialog

textAreaIndex - Variable in class imagej.patcher.HeadlessGenericDialog

Deprecated.

textAreaIndex - Variable in class net.imagej.patcher.HeadlessGenericDialog

TextOverlay - Class in net.imagej.overlay

Represents an Overlay that contains a string of text.

TextOverlay(Context, double, double, String, TextOverlay.Justification) - Constructor for class net.imagej.overlay.TextOverlay

TextOverlay(Context, double, double, String) - Constructor for class net.imagej.overlay.TextOverlay

TextOverlay(Context, double, double) - Constructor for class net.imagej.overlay.TextOverlay

TextOverlay(Context) - Constructor for class net.imagej.overlay.TextOverlay

TextOverlay.Justification - Enum in net.imagej.overlay

textPane - Variable in class net.imagej.ui.swing.updater.DiffView

TextRenderer - Interface in net.imagej.render

Basic text renderer interface, which renders text into an int[] buffer.

TextRenderer.FontFamily - Enum in net.imagej.render

TextRenderer.FontStyle - Enum in net.imagej.render

TextRenderer.TextJustification - Enum in net.imagej.render

TextRoiToTextRoiWrapper - Class in net.imagej.omero.legacy.text

Wraps a TextRoi to a TextRoiWrapper.

TextRoiToTextRoiWrapper() - Constructor for class net.imagej.omero.legacy.text.TextRoiToTextRoiWrapper

TextRoiToTextRoiWrapperOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.TextRoiToTextRoiWrapperOMEROConverter

TextRoiUnwrapper - Class in net.imagej.omero.legacy.text

Unwraps TextRoiWrapper.

TextRoiUnwrapper() - Constructor for class net.imagej.omero.legacy.text.TextRoiUnwrapper

TextRoiWrapper - Class in net.imagej.omero.legacy.text

An IJRealRoiWrapper which wraps a TextRoi as a RealMaskRealInterval.

TextRoiWrapper(TextRoi) - Constructor for class net.imagej.omero.legacy.text.TextRoiWrapper

TextRoiWrapperToTextData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.TextRoiWrapperToTextData

textureHomogeneity(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

textureHomogeneity(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

tfVersion - Variable in class net.imagej.tensorflow.TensorFlowVersion

thinGuoHall(RandomAccessibleInterval) - Method in class net.imagej.ops.morphology.MorphologyNamespace

thinGuoHall(RandomAccessibleInterval, RandomAccessibleInterval) - Method in class net.imagej.ops.morphology.MorphologyNamespace

ThinGuoHall - Class in net.imagej.ops.morphology.thin

Thinning Operation

ThinGuoHall() - Constructor for class net.imagej.ops.morphology.thin.ThinGuoHall

thinHilditch(RandomAccessibleInterval) - Method in class net.imagej.ops.morphology.MorphologyNamespace

thinHilditch(RandomAccessibleInterval, RandomAccessibleInterval) - Method in class net.imagej.ops.morphology.MorphologyNamespace

ThinHilditch - Class in net.imagej.ops.morphology.thin

Thinning Operation

ThinHilditch() - Constructor for class net.imagej.ops.morphology.thin.ThinHilditch

thinMorphological(RandomAccessibleInterval) - Method in class net.imagej.ops.morphology.MorphologyNamespace

thinMorphological(RandomAccessibleInterval, RandomAccessibleInterval) - Method in class net.imagej.ops.morphology.MorphologyNamespace

ThinMorphological - Class in net.imagej.ops.morphology.thin

Thinning Operation

ThinMorphological() - Constructor for class net.imagej.ops.morphology.thin.ThinMorphological

ThinningStrategy - Interface in net.imagej.ops.morphology.thin

An interface for a simple thinning strategy employed by the thinningOp.

thinZhangSuen(RandomAccessibleInterval) - Method in class net.imagej.ops.morphology.MorphologyNamespace

thinZhangSuen(RandomAccessibleInterval, RandomAccessibleInterval) - Method in class net.imagej.ops.morphology.MorphologyNamespace

ThinZhangSuen - Class in net.imagej.ops.morphology.thin

Thinning Operation

ThinZhangSuen() - Constructor for class net.imagej.ops.morphology.thin.ThinZhangSuen

thread() - Method in interface net.imagej.ops.OpEnvironment

Gateway into ops of the "thread" namespace.

THREAD_COUNT - Static variable in class net.imagej.util.MirrorWebsite

Threadable - Interface in net.imagej.ops

Interface for objects intended to be reused across multiple threads simultaneously.

ThreadNamespace - Class in net.imagej.ops.thread

The thread namespace contains operations related to multithreading.

ThreadNamespace() - Constructor for class net.imagej.ops.thread.ThreadNamespace

threadService - Variable in class net.imagej.ops.thread.chunker.AbstractChunker

ThreadService used for multi-threading

threshEachPlane - Variable in class net.imagej.plugins.commands.binary.AbstractBinaryCommand

threshold() - Method in interface net.imagej.ops.OpEnvironment

Gateway into ops of the "threshold" namespace.

Threshold<T extends RealType<T>> - Class in net.imagej.plugins.commands.display.interactive

Threshold is the Command that allows one to interactively create and manipulate ThresholdOverlays for a ImageDisplay.

Threshold() - Constructor for class net.imagej.plugins.commands.display.interactive.Threshold

thresholdComputer - Variable in class net.imagej.ops.threshold.LocalThresholdMethodHistogram

thresholdEachPlane() - Method in class net.imagej.plugins.commands.binary.Binarize

Gets whether to threshold each plane separately or to threshold the whole image at once.

ThresholdFigure - Class in net.imagej.ui.swing.overlay

Implementation of JHotDraw Figure that can display a ThresholdOverlay

ThresholdFigure(ImageDisplay, Dataset, ThresholdOverlay) - Constructor for class net.imagej.ui.swing.overlay.ThresholdFigure

ThresholdJHotDrawAdapter - Class in net.imagej.ui.swing.overlay

JHotDraw adapter for threshold overlays.

ThresholdJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.ThresholdJHotDrawAdapter

thresholdMethod() - Method in class net.imagej.plugins.commands.binary.Binarize

Gets the threshold method used for pixel discrimination.

ThresholdNamespace - Class in net.imagej.ops.threshold

The threshold namespace contains operations related to binary thresholding.

ThresholdNamespace() - Constructor for class net.imagej.ops.threshold.ThresholdNamespace

Thresholds - Class in net.imagej.ops.threshold

Utility methods used by the various threshold methods.

TIME - Static variable in class net.imagej.axis.Axes

Identifies the Time dimensional type, representing a dimension consisting of time points.

timestamp - Variable in class net.imagej.updater.AbstractUploader

timestamp - Variable in class net.imagej.updater.Checksummer.StringAndFile

timestamp - Variable in class net.imagej.updater.Dependency

timestamp - Variable in class net.imagej.updater.FileObject.Version

timestamp(long) - Static method in class net.imagej.updater.util.UpdaterUtil

timestamp(Calendar) - Static method in class net.imagej.updater.util.UpdaterUtil

timestamp2millis(long) - Static method in class net.imagej.updater.util.UpdaterUtil

timestamp2millis(String) - Static method in class net.imagej.updater.util.UpdaterUtil

timestampChanged(FileObject) - Method in class net.imagej.updater.Conflicts

timestampedId(int) - Static method in class net.imagej.server.Utils

Generates a (8+n) bit alphanumeric lowercase random ID.

timestampObsolete - Variable in class net.imagej.updater.FileObject.Version

timestampString() - Static method in class net.imagej.server.Utils

Converts the current time in milliseconds to an 8-digit lowercase alphanumeric String.

title() - Method in class net.imagej.ops.search.OpSearcher

title - Variable in class net.imagej.ui.swing.updater.DiffFile

title(String) - Method in class net.imagej.ui.swing.updater.FileDetails

to1D(long[], long[]) - Static method in class net.imagej.plugins.commands.restructure.ColorTableRemapper

toArray() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

toArray(T[]) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

toArray() - Method in class net.imagej.legacy.convert.ResultsTableWrapper

toArray(A[]) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

toArray() - Method in class net.imagej.legacy.convert.TableListWrapper

toArray(T[]) - Method in class net.imagej.legacy.convert.TableListWrapper

toArray() - Method in class net.imagej.omero.LazyTableList

toArray(T[]) - Method in class net.imagej.omero.LazyTableList

toArray() - Method in class net.imagej.omero.legacy.LazyOverlay

toBezierPath(PathIterator) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions

toByteArray(boolean) - Method in class net.imagej.updater.XMLFileWriter

toCamelCase(String) - Static method in class net.imagej.updater.util.UpdaterUtil

CamelCases a String.

toCompressedByteArray(boolean) - Method in class net.imagej.updater.XMLFileWriter

toDebug() - Method in class net.imagej.updater.FileObject

toggle(ImageDisplay) - Method in interface net.imagej.animation.AnimationService

Toggles animation for the given ImageDisplay.

toggle(ImageDisplay) - Method in class net.imagej.animation.DefaultAnimationService

toggleDetails() - Method in class net.imagej.ui.swing.updater.ProgressDialog

toggleEasyMode() - Method in class net.imagej.ui.swing.updater.UpdaterFrame

toggleLegacyMode(boolean) - Method in class net.imagej.legacy.LegacyImageMap

toggleLegacyMode(boolean) - Method in class net.imagej.legacy.LegacyService

Switches to/from running legacy ImageJ 1.x mode.

toggleLegacyMode(boolean, boolean) - Method in class net.imagej.legacy.LegacyService

toHex(byte[]) - Static method in class net.imagej.updater.util.UpdaterUtil

toImageJ(client, RType, Class<?>) - Method in class net.imagej.omero.DefaultOMEROService

toImageJ(client, RType, Class<?>) - Method in interface net.imagej.omero.OMEROService

Converts an OMERO parameter value to an ImageJ value of the given type.

toInput(double) - Method in interface net.imagej.units.Calibrator

Map an output double value to an input double value.

toInput(double) - Method in class net.imagej.units.LinearCalibrator

toInstall() - Method in class net.imagej.updater.FileObject

toInstall() - Method in class net.imagej.updater.FilesCollection

toInstallOrUpdate() - Method in class net.imagej.updater.FilesCollection

toMask(Object) - Method in class net.imagej.roi.DefaultROIService

toMask(Object) - Method in interface net.imagej.roi.ROIService

Attempts to convert the given Object to a Mask

toMaskInterval(Object) - Method in class net.imagej.roi.DefaultROIService

toMaskInterval(Object) - Method in interface net.imagej.roi.ROIService

Attempts to convert the given Object to a MaskInterval

toMaskPredicate(Object) - Method in class net.imagej.roi.DefaultROIService

toMaskPredicate(Object) - Method in interface net.imagej.roi.ROIService

Attempts to convert the given Object to a MaskPredicate.

toND(long[], long, long[]) - Static method in class net.imagej.plugins.commands.restructure.ColorTableRemapper

ToolDelegator - Class in net.imagej.ui.swing.overlay

TODO

ToolDelegator() - Constructor for class net.imagej.ui.swing.overlay.ToolDelegator

toOMERO(Object) - Method in class net.imagej.omero.DefaultOMEROService

toOMERO(client, Object) - Method in class net.imagej.omero.DefaultOMEROService

toOMERO(Object) - Method in interface net.imagej.omero.OMEROService

Converts an ImageJ parameter value to an OMERO parameter value.

toOMERO(client, Object) - Method in interface net.imagej.omero.OMEROService

Converts an ImageJ parameter value to an OMERO parameter value.

toOutput(double) - Method in interface net.imagej.units.Calibrator

Map an input double value to an output double value.

toOutput(double) - Method in class net.imagej.units.LinearCalibrator

topHat(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace

topHat(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace

ToplevelImageJApp - Class in net.imagej.app

An extension of ImageJApp that provides the versions of both ImageJ2 and the original ImageJ, when ToplevelImageJApp.getVersion() is called.

ToplevelImageJApp() - Constructor for class net.imagej.app.ToplevelImageJApp

topology() - Method in interface net.imagej.ops.OpEnvironment

Gateway into ops of the "topology" namespace

TopologyNamespace - Class in net.imagej.ops.topology

The topology namespace contains operations for calculating topology characteristics

TopologyNamespace() - Constructor for class net.imagej.ops.topology.TopologyNamespace

toRandomAccessibleInterval(Object) - Method in class net.imagej.roi.DefaultROIService

toRandomAccessibleInterval(Object) - Method in interface net.imagej.roi.ROIService

Attempts to convert the given Object to a RandomAccessibleInterval<BoolType>; otherwise, an exception is thrown.

toRandomAcessible(Object) - Method in class net.imagej.roi.DefaultROIService

toRandomAcessible(Object) - Method in interface net.imagej.roi.ROIService

Attempts to convert the given Object to a RandomAccessible<BoolType>; otherwise, an exception is thrown.

toRealMask(Object) - Method in class net.imagej.roi.DefaultROIService

toRealMask(Object) - Method in interface net.imagej.roi.ROIService

Attempts to convert the given Object to a RealMask

toRealMaskRealInterval(Object) - Method in class net.imagej.roi.DefaultROIService

toRealMaskRealInterval(Object) - Method in interface net.imagej.roi.ROIService

Attempts to convert the given Object to a RealMaskRealInterval

toRealRandomAccessible(Object) - Method in class net.imagej.roi.DefaultROIService

toRealRandomAccessible(Object) - Method in interface net.imagej.roi.ROIService

Attempts to convert the given Object to a RealRandomAccessible.

toRealRandomAccessibleRealInterval(Object) - Method in class net.imagej.roi.DefaultROIService

toRealRandomAccessibleRealInterval(Object) - Method in interface net.imagej.roi.ROIService

Attempts to convert the given Object to a RealRandomAccessibleRealInterval.

toRemove() - Method in class net.imagej.updater.FilesCollection

toShape(F) - Method in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter

Converts a figure into an AWT Shape.

toShape(AngleJHotDrawAdapter.AngleFigure) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter

toShape(ImageFigure) - Method in class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter

toShape(EllipseFigure) - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter

toShape(GeneralPathFigure) - Method in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter

toShape(LineFigure) - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter

toShape(PointFigure) - Method in class net.imagej.ui.swing.overlay.PointJHotDrawOverlay

toShape(BezierFigure) - Method in class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter

toShape(BezierFigure) - Method in class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter

toShape(RectangleFigure) - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter

toShape(ThresholdFigure) - Method in class net.imagej.ui.swing.overlay.ThresholdJHotDrawAdapter

toString() - Method in class net.imagej.AbstractData

toString() - Method in class net.imagej.axis.DefaultAxisType

toString() - Method in enum net.imagej.display.ColorMode

toString() - Method in class net.imagej.display.DefaultImageDisplay

toString() - Method in class net.imagej.display.event.AxisEvent

toString() - Method in class net.imagej.display.event.CanvasEvent

toString() - Method in class net.imagej.display.event.DataViewEvent

toString() - Method in class net.imagej.display.event.DelayedPositionEvent

toString() - Method in class net.imagej.display.event.MouseCursorEvent

toString() - Method in class net.imagej.display.event.PanZoomEvent

toString() - Method in class net.imagej.display.event.ViewportResizeEvent

toString() - Method in class net.imagej.display.OverlayInfo

toString() - Method in class net.imagej.Extents

toString() - Method in class net.imagej.launcher.ClassLoaderPlus

toString() - Method in class net.imagej.legacy.convert.ImageTitleToImagePlusConverter.ImageTitle

toString() - Method in class net.imagej.legacy.convert.StringToImagePlusConverter.ImageTitle

toString() - Method in class net.imagej.omero.legacy.LazyOverlay

toString() - Method in class net.imagej.omero.roi.ellipse.AbstractOMEROEllipse

toString() - Method in class net.imagej.omero.roi.line.DefaultOMEROLine

toString() - Method in class net.imagej.omero.roi.mask.DefaultOMEROMask

toString() - Method in class net.imagej.omero.roi.point.DefaultOMEROPoint

toString() - Method in class net.imagej.omero.roi.polyshape.AbstractOMEROPolygon

toString() - Method in class net.imagej.omero.roi.polyshape.DefaultOMEROPolyline

toString() - Method in class net.imagej.omero.roi.rectangle.AbstractOMERORectangle

toString() - Method in class net.imagej.ops.features.zernike.helper.Polynom

provide a String representation of this polynom.

toString() - Method in class net.imagej.ops.OpCandidate

toString() - Method in class net.imagej.ops.OpInfo

toString() - Method in class net.imagej.ops.OpRef

toString() - Method in class net.imagej.Position

toString() - Method in class net.imagej.server.mixins.Mixins.OutOfBoundsFactoryMixIn

toString() - Method in class net.imagej.server.mixins.Mixins.RealTypeMixIn

toString() - Method in class net.imagej.server.mixins.Mixins.ToStringMixIn

toString() - Method in class net.imagej.server.mixins.Mixins.TypeMixIn

toString() - Method in class net.imagej.tensorflow.TensorFlowVersion

toString() - Method in class net.imagej.types.PreciseFixedFloatType

toString() - Method in class net.imagej.types.UnboundedIntegerType

toString() - Method in enum net.imagej.ui.swing.updater.ViewOptions.Option

toString() - Method in class net.imagej.updater.action.InstallOrUpdate

toString() - Method in class net.imagej.updater.action.KeepAsIs

toString() - Method in class net.imagej.updater.action.Remove

toString() - Method in class net.imagej.updater.action.Uninstall

toString() - Method in class net.imagej.updater.action.Upload

toString() - Method in class net.imagej.updater.Checksummer.StringAndFile

toString() - Method in enum net.imagej.updater.Conflicts.Conflict.Severity

toString() - Method in class net.imagej.updater.Conflicts.Conflict

toString() - Method in class net.imagej.updater.Dependency

toString() - Method in enum net.imagej.updater.Diff.Mode

toString() - Method in enum net.imagej.updater.FileObject.Action

toString() - Method in class net.imagej.updater.FileObject

toString() - Method in class net.imagej.updater.FileObject.Version

toString() - Method in class net.imagej.updater.FilesCollection

toString() - Method in class net.imagej.updater.FilesUploader.DbXmlFile

toString() - Method in class net.imagej.updater.UpdateSite

toString() - Method in class net.imagej.updater.UploadableFile

toString() - Method in class net.imagej.updater.URLChange

toString() - Method in class net.imagej.updater.util.ByteCodeAnalyzer.Attribute

toString() - Method in class net.imagej.updater.util.ByteCodeAnalyzer.Field

toString() - Method in class net.imagej.updater.util.ByteCodeAnalyzer.Interface

toString() - Method in class net.imagej.updater.util.ByteCodeAnalyzer

toString(ByteCodeAnalyzer.Attribute[]) - Method in class net.imagej.updater.util.ByteCodeAnalyzer

ToStringMixIn() - Constructor for class net.imagej.server.mixins.Mixins.ToStringMixIn

total - Variable in class net.imagej.updater.AbstractUploader

total - Variable in class net.imagej.updater.util.Downloader

touch(File) - Static method in class net.imagej.updater.FileObject

toUninstall() - Method in class net.imagej.updater.FileObject

toUninstall() - Method in class net.imagej.updater.FilesCollection

toUpdate() - Method in class net.imagej.updater.FileObject

toUpdate() - Method in class net.imagej.updater.FilesCollection

toUpload() - Method in class net.imagej.updater.FileObject

toUpload() - Method in class net.imagej.updater.FilesCollection

toUpload(boolean) - Method in class net.imagej.updater.FilesCollection

toUpload(String) - Method in class net.imagej.updater.FilesCollection

toUploadOrRemove() - Method in class net.imagej.updater.FilesCollection

trackEnd(Point, Point, int) - Method in class net.imagej.ui.swing.overlay.PolygonNodeHandle

transform(AffineGet) - Method in class net.imagej.omero.legacy.text.OMEROText

transform(RealTransform) - Method in class net.imagej.omero.legacy.text.OMEROText

transform(AffineGet) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper

transform(RealTransform) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper

transform() - Method in interface net.imagej.ops.OpEnvironment

Gateway into ops of the "transform" namespace.

transform(ClassLoader, String, Class<?>, ProtectionDomain, byte[]) - Method in class net.imagej.patcher.JavaAgent

transform(AffineTransform) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure

transform(AffineTransform) - Method in class net.imagej.ui.swing.overlay.PointFigure

Moves the Figure to a new location.

transform(AffineTransform) - Method in class net.imagej.ui.swing.overlay.ThresholdFigure

TransformedOMERORealMaskRealInterval<S extends ShapeData> - Class in net.imagej.omero.roi.transform

A transformed OMERORealMaskRealInterval represented as a UnaryCompositeMaskPredicate.

TransformedOMERORealMaskRealInterval(OMERORealMaskRealInterval<S>, RealInterval, Operators.RealTransformMaskOperator) - Constructor for class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealInterval

TransformedOMERORealMaskRealIntervalToShapeData - Class in net.imagej.omero.roi.transform

Converts TransformedOMERORealMaskRealInterval to ShapeData.

TransformedOMERORealMaskRealIntervalToShapeData() - Constructor for class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealIntervalToShapeData

TransformNamespace - Class in net.imagej.ops.transform

All method descriptions are from Views.

TransformNamespace() - Constructor for class net.imagej.ops.transform.TransformNamespace

translate(int, int) - Method in class net.imagej.omero.legacy.LazyOverlay

translate(double, double) - Method in class net.imagej.omero.legacy.LazyOverlay

TranslateImage<T extends RealType<T>> - Class in net.imagej.plugins.commands.imglib

Translates an existing image by a set of possibly nonintegral deltas.

TranslateImage() - Constructor for class net.imagej.plugins.commands.imglib.TranslateImage

translateView(RandomAccessible<T>, long...) - Method in class net.imagej.ops.transform.TransformNamespace

Translate the source view by the given translation vector.

translateView(RandomAccessibleInterval<T>, long...) - Method in class net.imagej.ops.transform.TransformNamespace

Translate the source view by the given translation vector, preserving interval bounds.

transpose(Object) - Method in class net.imagej.ops.eval.OpEvaluator

Traverser(RandomAccessibleInterval) - Constructor for class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser

TreeNodeMaskPredicateToROIData - Class in net.imagej.omero.roi

Converts a TreeNode<MaskPredicate<?>> to a ROIData.

TreeNodeMaskPredicateToROIData() - Constructor for class net.imagej.omero.roi.TreeNodeMaskPredicateToROIData

TreeNodePointRoiWrapperToROIData - Class in net.imagej.omero.legacy.convert

Converts a PointRoiWrapper to a ROIData.

TreeNodePointRoiWrapperToROIData() - Constructor for class net.imagej.omero.legacy.convert.TreeNodePointRoiWrapperToROIData

TreeNodeRAIToROIData - Class in net.imagej.omero.roi

Converts a TreeNode<RandomAccessibleInterval<?>> to a ROIData.

TreeNodeRAIToROIData() - Constructor for class net.imagej.omero.roi.TreeNodeRAIToROIData

TreeNodeRPCToROIData - Class in net.imagej.omero.roi.point

Converts a RealPointCollection to ROIData.

TreeNodeRPCToROIData() - Constructor for class net.imagej.omero.roi.point.TreeNodeRPCToROIData

Triangle - Interface in net.imagej.mesh

One triangle of a Triangles collection.

Triangle() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Triangle

triangle(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

triangle(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

triangle(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

triangle(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

triangle(IterableInterval, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

triangle(IterableInterval, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

triangles() - Method in interface net.imagej.mesh.Mesh

The mesh's collection of triangles.

triangles() - Method in class net.imagej.mesh.naive.NaiveDoubleMesh

Triangles() - Constructor for class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles

triangles() - Method in class net.imagej.mesh.naive.NaiveFloatMesh

Triangles() - Constructor for class net.imagej.mesh.naive.NaiveFloatMesh.Triangles

triangles() - Method in class net.imagej.mesh.nio.BufferMesh

Triangles(IntBuffer, FloatBuffer) - Constructor for class net.imagej.mesh.nio.BufferMesh.Triangles

Triangles - Interface in net.imagej.mesh

Collection of triangles for a Mesh.

TriangularFacet - Class in net.imagej.ops.geom.geom3d.mesh

This is the triangle implementation of Facet Interface.

TriangularFacet() - Constructor for class net.imagej.ops.geom.geom3d.mesh.TriangularFacet

Creates a new empty facet.

TriangularFacet(Vertex, Vertex, Vertex) - Constructor for class net.imagej.ops.geom.geom3d.mesh.TriangularFacet

Creates a new facet of three vertices.

triedLoading() - Method in class net.imagej.tensorflow.TensorFlowLibraryStatus

tryLoadingCollection() - Method in class net.imagej.updater.FilesCollection

tryToGuessPlatform(FileObject) - Method in class net.imagej.updater.Checksummer

tubeness(IterableInterval<DoubleType>, RandomAccessibleInterval<T>, double, double...) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "tubeness" filter operation on the given arguments.

tubeness(RandomAccessibleInterval<T>, double, double...) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "tubeness" filter operation on the given arguments.

type() - Method in class net.imagej.axis.DefaultTypedAxis

type() - Method in interface net.imagej.axis.TypedAxis

Gets the type of the axis.

type(T) - Method in class net.imagej.ops.copy.CopyNamespace

type(T, T) - Method in class net.imagej.ops.copy.CopyNamespace

typeChange() - Method in interface net.imagej.Dataset

TODO

typeChange() - Method in class net.imagej.DefaultDataset

TypeChanger,V extends RealType<V> & NativeType<V>> - Class in net.imagej.plugins.commands.typechange

TypeChanger changes the type of the data in a Dataset.

TypeChanger() - Constructor for class net.imagej.plugins.commands.typechange.TypeChanger

typed(ImgPlus<?>) - Method in class net.imagej.DefaultImgPlusService

typed(ImgPlus<?>) - Method in interface net.imagej.ImgPlusService

Given an ImgPlus of unknown type this returns a typed ImgPlus of type Type.

TypedAxis - Interface in net.imagej.axis

An axis with an associated AxisType.

typedImg(T) - Method in interface net.imagej.Dataset

TODO

typedParse(RandomAccessInputStream, OMEROFormat.Metadata, SCIFIOConfig) - Method in class net.imagej.omero.OMEROFormat.Parser

TypedRealInterval<A extends TypedAxis> - Interface in net.imagej.interval

A RealInterval over a TypedSpace.

TypedSpace<A extends TypedAxis> - Interface in net.imagej.space

A Euclidean space with typed dimensional axes.

TypeMixIn() - Constructor for class net.imagej.server.mixins.Mixins.TypeMixIn

Types - Class in net.imagej.ops.convert

Utility methods for converting between primitive types.

types(Type...) - Static method in class net.imagej.ops.OpRef

typesMatch(OpCandidate) - Method in class net.imagej.ops.DefaultOpMatchingService

typesMatch(OpCandidate) - Method in interface net.imagej.ops.OpMatchingService

Checks that each parameter is type-compatible with its corresponding argument.

typesMatch(Class<?>) - Method in class net.imagej.ops.OpRef

Determines whether the op's required types match the given class.

U

u(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

u() - Method in interface net.imagej.mesh.Vertex

U value of vertex texture coordinate, as a double.

u(long) - Method in interface net.imagej.mesh.Vertices

U value of vertex texture coordinate, as a double.

UCViaUC - Class in net.imagej.ops.special.chain

Base class for UnaryComputerOps that delegate to other UnaryComputerOps.

UCViaUC() - Constructor for class net.imagej.ops.special.chain.UCViaUC

UCViaUCAllSame<IO> - Class in net.imagej.ops.special.chain

Base class for UnaryComputerOps that delegate to other UnaryComputerOps with all matching types (input same as output).

UCViaUCAllSame() - Constructor for class net.imagej.ops.special.chain.UCViaUCAllSame

UCViaUCSameIO<I,O> - Class in net.imagej.ops.special.chain

Base class for UnaryComputerOps that delegate to other UnaryComputerOps with the same input and output types.

UCViaUCSameIO() - Constructor for class net.imagej.ops.special.chain.UCViaUCSameIO

uf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

uf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices

uf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices

uf() - Method in interface net.imagej.mesh.Vertex

U value of vertex texture coordinate, as a float.

uf(long) - Method in interface net.imagej.mesh.Vertices

U value of vertex texture coordinate, as a float.

UFViaUC - Class in net.imagej.ops.special.chain

Base class for UnaryFunctionOps that delegate to UnaryComputerOps.

UFViaUC() - Constructor for class net.imagej.ops.special.chain.UFViaUC

UFViaUCAllSame<IO> - Class in net.imagej.ops.special.chain

Base class for UnaryFunctionOps that delegate to UnaryComputerOps with all matching types (input same as output).

UFViaUCAllSame() - Constructor for class net.imagej.ops.special.chain.UFViaUCAllSame

UFViaUCSameIO<I,O> - Class in net.imagej.ops.special.chain

Base class for UnaryFunctionOps that delegate to UnaryComputerOps with the same input and output types.

UFViaUCSameIO() - Constructor for class net.imagej.ops.special.chain.UFViaUCSameIO

UFViaUF - Class in net.imagej.ops.special.chain

Base class for UnaryFunctionOps that delegate to other UnaryFunctionOps.

UFViaUF() - Constructor for class net.imagej.ops.special.chain.UFViaUF

UFViaUFAllSame<IO> - Class in net.imagej.ops.special.chain

Base class for UnaryFunctionOps that delegate to other UnaryFunctionOps with all matching types (input same as output).

UFViaUFAllSame() - Constructor for class net.imagej.ops.special.chain.UFViaUFAllSame

UFViaUFSameIO<I,O> - Class in net.imagej.ops.special.chain

Base class for UnaryFunctionOps that delegate to other UnaryFunctionOps with the same input and output types.

UFViaUFSameIO() - Constructor for class net.imagej.ops.special.chain.UFViaUFSameIO

UHCFViaUC - Class in net.imagej.ops.special.chain

Base class for UnaryHybridCFs that delegate to UnaryComputerOps.

UHCFViaUC() - Constructor for class net.imagej.ops.special.chain.UHCFViaUC

UHCFViaUCAllSame<IO> - Class in net.imagej.ops.special.chain

Base class for UnaryHybridCFs that delegate to UnaryComputerOps with all matching types (input same as output).

UHCFViaUCAllSame() - Constructor for class net.imagej.ops.special.chain.UHCFViaUCAllSame

UHCFViaUCSameIO<I,O> - Class in net.imagej.ops.special.chain

Base class for UnaryHybridCFs that delegate to UnaryComputerOps with the same input and output types.

UHCFViaUCSameIO() - Constructor for class net.imagej.ops.special.chain.UHCFViaUCSameIO

UHCFViaUHCF - Class in net.imagej.ops.special.chain

Base class for UnaryHybridCFs that delegate to other UnaryHybridCFs.

UHCFViaUHCF() - Constructor for class net.imagej.ops.special.chain.UHCFViaUHCF

UHCFViaUHCFAllSame<IO> - Class in net.imagej.ops.special.chain

Base class for UnaryHybridCFs that delegate to other UnaryHybridCFs with all matching types (input same as output).

UHCFViaUHCFAllSame() - Constructor for class net.imagej.ops.special.chain.UHCFViaUHCFAllSame

UHCFViaUHCFSameIO<I,O> - Class in net.imagej.ops.special.chain

Base class for UnaryHybridCFs that delegate to other UnaryHybridCFs with the same input and output types.

UHCFViaUHCFSameIO() - Constructor for class net.imagej.ops.special.chain.UHCFViaUHCFSameIO

ui - Static variable in class net.imagej.updater.util.UpdaterUserInterface

Uint12() - Constructor for class net.imagej.ops.convert.ConvertImages.Uint12

uint12(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

uint12(Img<Unsigned12BitType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

uint12(C) - Method in class net.imagej.ops.convert.ConvertNamespace

uint12(Unsigned12BitType, C) - Method in class net.imagej.ops.convert.ConvertNamespace

uint12(T) - Method in class net.imagej.ops.convert.ConvertNamespace

uint12(Unsigned12BitType, T) - Method in class net.imagej.ops.convert.ConvertNamespace

uint12(long) - Static method in class net.imagej.ops.convert.Types

uint12(double) - Static method in class net.imagej.ops.convert.Types

uint12(Number) - Static method in class net.imagej.ops.convert.Types

uint12(boolean) - Static method in class net.imagej.ops.convert.Types

Uint128() - Constructor for class net.imagej.ops.convert.ConvertImages.Uint128

uint128(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

uint128(Img<Unsigned128BitType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

uint128(T) - Method in class net.imagej.ops.convert.ConvertNamespace

uint128(Unsigned128BitType, T) - Method in class net.imagej.ops.convert.ConvertNamespace

uint128(C) - Method in class net.imagej.ops.convert.ConvertNamespace

uint128(Unsigned128BitType, C) - Method in class net.imagej.ops.convert.ConvertNamespace

uint128(long) - Static method in class net.imagej.ops.convert.Types

uint128(double) - Static method in class net.imagej.ops.convert.Types

uint128(BigInteger) - Static method in class net.imagej.ops.convert.Types

uint128(boolean) - Static method in class net.imagej.ops.convert.Types

Uint16() - Constructor for class net.imagej.ops.convert.ConvertImages.Uint16

uint16(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

uint16(Img<UnsignedShortType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

uint16(C) - Method in class net.imagej.ops.convert.ConvertNamespace

uint16(UnsignedShortType, C) - Method in class net.imagej.ops.convert.ConvertNamespace

uint16(T) - Method in class net.imagej.ops.convert.ConvertNamespace

uint16(UnsignedShortType, T) - Method in class net.imagej.ops.convert.ConvertNamespace

uint16(long) - Static method in class net.imagej.ops.convert.Types

uint16(double) - Static method in class net.imagej.ops.convert.Types

uint16(Number) - Static method in class net.imagej.ops.convert.Types

uint16(boolean) - Static method in class net.imagej.ops.convert.Types

Uint2() - Constructor for class net.imagej.ops.convert.ConvertImages.Uint2

uint2(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

uint2(Img<Unsigned2BitType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

uint2(C) - Method in class net.imagej.ops.convert.ConvertNamespace

uint2(Unsigned2BitType, C) - Method in class net.imagej.ops.convert.ConvertNamespace

uint2(T) - Method in class net.imagej.ops.convert.ConvertNamespace

uint2(Unsigned2BitType, T) - Method in class net.imagej.ops.convert.ConvertNamespace

uint2(long) - Static method in class net.imagej.ops.convert.Types

uint2(double) - Static method in class net.imagej.ops.convert.Types

uint2(Number) - Static method in class net.imagej.ops.convert.Types

uint2(boolean) - Static method in class net.imagej.ops.convert.Types

Uint32() - Constructor for class net.imagej.ops.convert.ConvertImages.Uint32

uint32(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

uint32(Img<UnsignedIntType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

uint32(C) - Method in class net.imagej.ops.convert.ConvertNamespace

uint32(UnsignedIntType, C) - Method in class net.imagej.ops.convert.ConvertNamespace

uint32(T) - Method in class net.imagej.ops.convert.ConvertNamespace

uint32(UnsignedIntType, T) - Method in class net.imagej.ops.convert.ConvertNamespace

uint32(long) - Static method in class net.imagej.ops.convert.Types

uint32(double) - Static method in class net.imagej.ops.convert.Types

uint32(Number) - Static method in class net.imagej.ops.convert.Types

uint32(boolean) - Static method in class net.imagej.ops.convert.Types

Uint4() - Constructor for class net.imagej.ops.convert.ConvertImages.Uint4

uint4(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

uint4(Img<Unsigned4BitType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

uint4(C) - Method in class net.imagej.ops.convert.ConvertNamespace

uint4(Unsigned4BitType, C) - Method in class net.imagej.ops.convert.ConvertNamespace

uint4(T) - Method in class net.imagej.ops.convert.ConvertNamespace

uint4(Unsigned4BitType, T) - Method in class net.imagej.ops.convert.ConvertNamespace

uint4(long) - Static method in class net.imagej.ops.convert.Types

uint4(double) - Static method in class net.imagej.ops.convert.Types

uint4(Number) - Static method in class net.imagej.ops.convert.Types

uint4(boolean) - Static method in class net.imagej.ops.convert.Types

Uint64() - Constructor for class net.imagej.ops.convert.ConvertImages.Uint64

uint64(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

uint64(Img<UnsignedLongType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

uint64(C) - Method in class net.imagej.ops.convert.ConvertNamespace

uint64(UnsignedLongType, C) - Method in class net.imagej.ops.convert.ConvertNamespace

uint64(T) - Method in class net.imagej.ops.convert.ConvertNamespace

uint64(UnsignedLongType, T) - Method in class net.imagej.ops.convert.ConvertNamespace

uint64(long) - Static method in class net.imagej.ops.convert.Types

uint64(double) - Static method in class net.imagej.ops.convert.Types

uint64(Number) - Static method in class net.imagej.ops.convert.Types

uint64(boolean) - Static method in class net.imagej.ops.convert.Types

uint64Uint128(BigInteger) - Static method in class net.imagej.ops.convert.Types

Uint8() - Constructor for class net.imagej.ops.convert.ConvertImages.Uint8

uint8(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

uint8(Img<UnsignedByteType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace

uint8(C) - Method in class net.imagej.ops.convert.ConvertNamespace

uint8(UnsignedByteType, C) - Method in class net.imagej.ops.convert.ConvertNamespace

uint8(T) - Method in class net.imagej.ops.convert.ConvertNamespace

uint8(UnsignedByteType, T) - Method in class net.imagej.ops.convert.ConvertNamespace

uint8(long) - Static method in class net.imagej.ops.convert.Types

uint8(double) - Static method in class net.imagej.ops.convert.Types

uint8(Number) - Static method in class net.imagej.ops.convert.Types

uint8(boolean) - Static method in class net.imagej.ops.convert.Types

UIOViaUI<A extends DO,DI,DO extends DI> - Class in net.imagej.ops.special.chain

Base class for UnaryInplaceOnlyOps that delegate to UnaryInplaceOps.

UIOViaUI() - Constructor for class net.imagej.ops.special.chain.UIOViaUI

UIOViaUISame<A> - Class in net.imagej.ops.special.chain

Base class for UnaryInplaceOnlyOps that delegate to UnaryInplaceOps with all matching types (input same as output).

UIOViaUISame() - Constructor for class net.imagej.ops.special.chain.UIOViaUISame

uiService() - Method in class net.imagej.legacy.LegacyService

ulp(O, I) - Method in class net.imagej.ops.math.MathNamespace

Ulp() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Ulp

unary(OpEnvironment, Class<? extends Op>, Class<O>, Class, Object...) - Static method in class net.imagej.ops.special.computer.Computers

Gets the best UnaryComputerOp implementation for the given types and arguments, populating its inputs.

unary(OpEnvironment, Class<? extends Op>, Class<O>, I, Object...) - Static method in class net.imagej.ops.special.computer.Computers

Gets the best UnaryComputerOp implementation for the given types and arguments, populating its inputs.

unary(OpEnvironment, Class<? extends Op>, O, I, Object...) - Static method in class net.imagej.ops.special.computer.Computers

Gets the best UnaryComputerOp implementation for the given types and arguments, populating its inputs.

unary(OpEnvironment, Class<? extends Op>, Class<O>, Class, Object...) - Static method in class net.imagej.ops.special.function.Functions

Gets the best UnaryFunctionOp implementation for the given types and arguments, populating its inputs.

unary(OpEnvironment, Class<? extends Op>, Class<O>, I, Object...) - Static method in class net.imagej.ops.special.function.Functions

Gets the best UnaryFunctionOp implementation for the given types and arguments, populating its inputs.

unary(OpEnvironment, Class<? extends Op>, Class<O>, Object...) - Static method in class net.imagej.ops.special.inplace.Inplaces

Gets the best UnaryInplaceOp implementation for the given types and arguments, populating its inputs.

unary(OpEnvironment, Class<? extends Op>, O, Object...) - Static method in class net.imagej.ops.special.inplace.Inplaces

Gets the best UnaryInplaceOp implementation for the given types and arguments, populating its inputs.

unaryCF(OpEnvironment, Class<? extends Op>, Class<O>, Class, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids

Gets the best UnaryHybridCF implementation for the given types and arguments, populating its inputs.

unaryCF(OpEnvironment, Class<? extends Op>, Class<O>, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids

Gets the best UnaryHybridCF implementation for the given types and arguments, populating its inputs.

unaryCF(OpEnvironment, Class<? extends Op>, O, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids

Gets the best UnaryHybridCF implementation for the given types and arguments, populating its inputs.

unaryCFI(OpEnvironment, Class<? extends Op>, Class<O>, Class, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids

Gets the best UnaryHybridCFI implementation for the given types and arguments, populating its inputs.

unaryCFI(OpEnvironment, Class<? extends Op>, Class<O>, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids

Gets the best UnaryHybridCFI implementation for the given types and arguments, populating its inputs.

unaryCFI(OpEnvironment, Class<? extends Op>, O, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids

Gets the best UnaryHybridCFI implementation for the given types and arguments, populating its inputs.

unaryCI(OpEnvironment, Class<? extends Op>, Class<O>, Class, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids

Gets the best UnaryHybridCI implementation for the given types and arguments, populating its inputs.

unaryCI(OpEnvironment, Class<? extends Op>, Class<O>, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids

Gets the best UnaryHybridCI implementation for the given types and arguments, populating its inputs.

unaryCI(OpEnvironment, Class<? extends Op>, O, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids

Gets the best UnaryHybridCI implementation for the given types and arguments, populating its inputs.

unaryComputer(I, O) - Method in class net.imagej.ops.filter.AbstractCenterAwareNeighborhoodBasedFilter

unaryComputer(O) - Method in class net.imagej.ops.filter.AbstractNeighborhoodBasedFilter

unaryComputer(V) - Method in class net.imagej.ops.filter.max.DefaultMaxFilter

unaryComputer(V) - Method in class net.imagej.ops.filter.mean.DefaultMeanFilter

unaryComputer(V) - Method in class net.imagej.ops.filter.median.DefaultMedianFilter

unaryComputer(V) - Method in class net.imagej.ops.filter.min.DefaultMinFilter

unaryComputer(T, V) - Method in class net.imagej.ops.filter.sigma.DefaultSigmaFilter

unaryComputer(V) - Method in class net.imagej.ops.filter.variance.DefaultVarianceFilter

unaryComputer() - Method in class net.imagej.ops.threshold.apply.LocalThresholdIntegral

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalHuangThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalIJ1Threshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalIntermodesThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalIsoDataThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalLiThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMaxEntropyThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMaxLikelihoodThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMinErrorThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMinimumThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMomentsThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalOtsuThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalPercentileThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalRenyiEntropyThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalRosinThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalShanbhagThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalTriangleThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalYenThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.localBernsen.LocalBernsenThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.localContrast.LocalContrastThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.localMean.LocalMeanThreshold

unaryComputer() - Method in class net.imagej.ops.threshold.localMean.LocalMeanThresholdIntegral

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.localMedian.LocalMedianThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.localMidGrey.LocalMidGreyThreshold

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.localNiblack.LocalNiblackThreshold

unaryComputer() - Method in class net.imagej.ops.threshold.localNiblack.LocalNiblackThresholdIntegral

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.localPhansalkar.LocalPhansalkarThreshold

unaryComputer() - Method in class net.imagej.ops.threshold.localPhansalkar.LocalPhansalkarThresholdIntegral

unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.localSauvola.LocalSauvolaThreshold

unaryComputer() - Method in class net.imagej.ops.threshold.localSauvola.LocalSauvolaThresholdIntegral

UnaryComputerOp<I,O> - Interface in net.imagej.ops.special.computer

A unary computer calculates a result from the given input, storing it into the specified output reference.

UnaryFunctionOp<I,O> - Interface in net.imagej.ops.special.function

A unary function calculates a result from the given input, returning it as a new object.

UnaryHybridCF<I,O> - Interface in net.imagej.ops.special.hybrid

A hybrid unary operation which can be used as a UnaryComputerOp or UnaryFunctionOp.

UnaryHybridCFI<I,O extends I> - Interface in net.imagej.ops.special.hybrid

A hybrid unary operation which can be used as a UnaryComputerOp, UnaryFunctionOp or UnaryInplaceOp.

UnaryHybridCI<I,O extends I> - Interface in net.imagej.ops.special.hybrid

A hybrid unary operation which can be used as a UnaryComputerOp or UnaryInplaceOp.

UnaryInplaceOnlyOp<A> - Interface in net.imagej.ops.special.inplace

A UnaryInplaceOp which is not a hybrid.

UnaryInplaceOp<I,O extends I> - Interface in net.imagej.ops.special.inplace

A unary inplace operation is an op which mutates a parameter.

UnaryInput - Interface in net.imagej.ops.special

Interface for objects with a typed input parameter.

UnaryOp<I,O> - Interface in net.imagej.ops.special

A unary operation computes a result from a given input.

UnaryOutputFactory<I,O> - Interface in net.imagej.ops.special

Factory which creates a typed output object given a typed input.

UnaryRealTypeMath - Class in net.imagej.ops.math

Ops of the math namespace which operate on RealTypes.

UnaryRealTypeMath.Abs,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the absolute value of the real component of an input real number.

UnaryRealTypeMath.Arccos,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the inverse cosine of the real component of an input real number.

UnaryRealTypeMath.Arccosh,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the inverse hyperbolic cosine of the real component of an input real number.

UnaryRealTypeMath.Arccot,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the inverse cotangent of the real component of an input real number.

UnaryRealTypeMath.Arccoth,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the inverse hyperbolic cotangent of the real component of an input real number.

UnaryRealTypeMath.Arccsc,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the inverse cosecant of the real component of an input real number.

UnaryRealTypeMath.Arccsch,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the inverse hyperbolic cosecant of the real component of an input real number.

UnaryRealTypeMath.Arcsec,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the inverse secant of the real component of an input real number.

UnaryRealTypeMath.Arcsech,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the inverse hyperbolic secant of the real component of an input real number.

UnaryRealTypeMath.Arcsin,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the inverse sine of the real component of an input real number.

UnaryRealTypeMath.Arcsinh,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the inverse hyperbolic sine of the real component of an input real number.

UnaryRealTypeMath.Arctan,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the inverse tangent of the real component of an input real number.

UnaryRealTypeMath.Arctanh,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the inverse hyperbolic tangent of the real component of an input real number.

UnaryRealTypeMath.Ceil,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the ceiling of the real component of an input real number.

UnaryRealTypeMath.Cos,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the cosine of the real component of an input real number.

UnaryRealTypeMath.Cosh,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the hyperbolic cosine of the real component of an input real number.

UnaryRealTypeMath.Cot,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the cotangent of the real component of an input real number.

UnaryRealTypeMath.Coth,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the hyperbolic cotangent of the real component of an input real number.

UnaryRealTypeMath.Csc,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the cosecant of the real component of an input real number.

UnaryRealTypeMath.Csch,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the hyperbolic cosecant of the real component of an input real number.

UnaryRealTypeMath.CubeRoot,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the cube root of the real component of an input real number.

UnaryRealTypeMath.Exp,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the exponentiation of the real component of an input real number.

UnaryRealTypeMath.ExpMinusOne,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to e^x - 1.

UnaryRealTypeMath.Floor,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the floor of the real component of an input real number.

UnaryRealTypeMath.GammaConstant,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the gamma value of the real component of an input real number.

UnaryRealTypeMath.Invert,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the inversion of the real component of an input real number about a range.

UnaryRealTypeMath.Log,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the natural log of the real component of an input real number.

UnaryRealTypeMath.Log10,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the 10-based log of the real component of an input real number.

UnaryRealTypeMath.Log2,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the base 2 log of the real component of an input real number.

UnaryRealTypeMath.LogOnePlusX,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the natural logarithm of the sum of the argument and 1.

UnaryRealTypeMath.MaxConstant,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the real component of an input real number unless it exceeds a maximum value.

UnaryRealTypeMath.MinConstant,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the real component of an input real number unless it is less then a minimum value.

UnaryRealTypeMath.NearestInt,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the nearest integral value of the real component of an input real number.

UnaryRealTypeMath.Negate,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the negation of the real component of an input real number.

UnaryRealTypeMath.PowerConstant,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the raising of the real component of an input real number to a constant value.

UnaryRealTypeMath.RandomGaussian,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to a random value using a gaussian distribution.

UnaryRealTypeMath.RandomUniform,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to a random value between 0 and (input real number).

UnaryRealTypeMath.Reciprocal,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the reciprocal of the real component of an input real number.

UnaryRealTypeMath.Round,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the rounding of the real component of an input real number.

UnaryRealTypeMath.Sec,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the secant of the real component of an input real number.

UnaryRealTypeMath.Sech,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the hyperbolic secant of the real component of an input real number.

UnaryRealTypeMath.Signum,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the signum of the real component of an input real number.

UnaryRealTypeMath.Sin,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the sine of the real component of an input real number.

UnaryRealTypeMath.Sinc,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the sinc value of the real component of an input real number.

UnaryRealTypeMath.SincPi,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the sinc (pi version) of the real component of an input real number.

UnaryRealTypeMath.Sinh,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the hyperbolic sine of the real component of an input real number.

UnaryRealTypeMath.Sqr,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the square of the real component of an input real number.

UnaryRealTypeMath.Sqrt,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the square root of the real component of an input real number.

UnaryRealTypeMath.Step,O extends RealType<O>> - Class in net.imagej.ops.math

Sets an output real number to 0 if the input real number is less than 0.

UnaryRealTypeMath.Tan,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the tangent of the real component of an input real number.

UnaryRealTypeMath.Tanh,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the hyperbolic tangent of the real component of an input real number.

UnaryRealTypeMath.Ulp,O extends RealType<O>> - Class in net.imagej.ops.math

Sets the real component of an output real number to the size of the ulp of an input real number.

UnboundedIntegerType - Class in net.imagej.types

A BigInteger backed integral type (unlimited range).

UnboundedIntegerType() - Constructor for class net.imagej.types.UnboundedIntegerType

UnboundedIntegerType(UnboundedIntegerType) - Constructor for class net.imagej.types.UnboundedIntegerType

UnboundedIntegerType(long) - Constructor for class net.imagej.types.UnboundedIntegerType

UnboundedIntegerType(BigInteger) - Constructor for class net.imagej.types.UnboundedIntegerType

undoableEditHappened(UndoableEditEvent) - Method in class net.imagej.ui.swing.updater.FileDetails

unGZip(String, File, String, LogService, StatusService) - Static method in class net.imagej.tensorflow.util.UnpackUtil

uninstall(RSyntaxTextArea) - Method in class net.imagej.legacy.plugin.MacroLanguageSupportPlugin

Uninstall - Class in net.imagej.updater.action

The uninstall action.

Uninstall() - Constructor for class net.imagej.updater.action.Uninstall

uninstalled() - Method in class net.imagej.updater.FilesCollection

unit() - Method in class net.imagej.axis.AbstractCalibratedAxis

unit() - Method in interface net.imagej.axis.CalibratedAxis

Gets the dimension's unit.

unit(UnitsLength) - Static method in class net.imagej.omero.OMEROUtils

Converts a UnitsLength object into a Unit<Length>.

unit(UnitsTime) - Static method in class net.imagej.omero.OMEROUtils

Converts a UnitsTime object into a Unit<Time>.

units - Static variable in class net.imagej.ui.swing.updater.UpdaterFrame

UnitService - Interface in net.imagej.units

Service for defining units and making unit conversions.

unknown() - Static method in class net.imagej.axis.Axes

Gets an "unknown" axis type.

UNKNOWN_LABEL - Static variable in class net.imagej.axis.Axes

Label for unknown axis types, which are returned by Axes.unknown().

UnmodifiablePolygonRoiWrapper - Class in net.imagej.legacy.convert.roi.polygon2d

Wraps an ImageJ 1.x PolygonRoi of type Roi.FREEROI or Roi.TRACED_ROI as an unmodifiable ImgLib2 Polygon2D.

UnmodifiablePolygonRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.UnmodifiablePolygonRoiWrapper

Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polygon2D.

UnmodifiablePolylineRoiWrapper - Class in net.imagej.legacy.convert.roi.polyline

Wraps an ImageJ 1.x PolygonRoi of type Roi.FREELINE and Roi.ANGLE as an unmodifiable ImgLib2 Polyline.

UnmodifiablePolylineRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.polyline.UnmodifiablePolylineRoiWrapper

Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polyline.

UnmodifiablePolylineRoiWrapperToPolylineData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.UnmodifiablePolylineRoiWrapperToPolylineData

UnpackUtil - Class in net.imagej.tensorflow.util

Utility class for unpacking archives TODO: generalize and move it to a place where others can use it as well

unregisterDisplay(ImageDisplay) - Method in class net.imagej.legacy.LegacyImageMap

Removes the mapping associated with the given ImageDisplay.

unregisterDisplay(ImageDisplay, boolean) - Method in class net.imagej.legacy.LegacyImageMap

As LegacyImageMap.unregisterDisplay(ImageDisplay), with an optional toggle to delete the associated ImagePlus.

unregisterImage(Object) - Method in class imagej.patcher.LegacyHooks

Deprecated.

Releases an image.

unregisterImage(Object) - Method in class net.imagej.legacy.DefaultLegacyHooks

unregisterImage(Object) - Method in class net.imagej.patcher.LegacyHooks

Releases an image.

unregisterLegacyImage(ImagePlus) - Method in class net.imagej.legacy.LegacyImageMap

Removes the mapping associated with the given ImagePlus.

unregisterLegacyImage(ImagePlus, boolean) - Method in class net.imagej.legacy.LegacyImageMap

As LegacyImageMap.unregisterLegacyImage(ImagePlus), with an optional toggle to delete the given ImagePlus.

unshearView(RandomAccessible<T>, int, int) - Method in class net.imagej.ops.transform.TransformNamespace

Negative shear transform of a RandomAccessible using InverseShearTransform, i.e.

unshearView(RandomAccessible<T>, Interval, int, int) - Method in class net.imagej.ops.transform.TransformNamespace

Negative shear transform of a RandomAccessible using InverseShearTransform, i.e.

UnshearViewInterval<T> - Class in net.imagej.ops.transform.unshearView

Wraps the Views.unshear(RandomAccessible, Interval, int, int) method.

UnshearViewInterval() - Constructor for class net.imagej.ops.transform.unshearView.UnshearViewInterval

unsignedRightShift(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator

unsignedRightShift(int, int) - Method in class net.imagej.ops.math.MathNamespace

unsignedRightShift(long, long) - Method in class net.imagej.ops.math.MathNamespace

UNSPECIFIED_BOUNDARY_TEXT - Static variable in class net.imagej.omero.roi.ROIConverters

unsupported(String) - Static method in class net.imagej.legacy.convert.roi.Rois

Throws UnsupportedOperationException with the given method name.

unwrap(Module, OpRef) - Static method in class net.imagej.ops.OpUtils

Unwraps the delegate object of the given Module, ensuring it is an instance whose type matches the specified OpRef.

unwrap(Module, Collection<? extends Type>) - Static method in class net.imagej.ops.OpUtils

Unwraps the delegate object of the given Module, ensuring it is an instance of the specified type(s).

Unwrappers - Class in net.imagej.roi

Unwraps MaskPredicates which have been wrapped as (Real)RandomAccessibles, and vice versa.

Unwrappers.MaskAsRandomAccessibleUnwrapper - Class in net.imagej.roi

Unwraps MaskAsRandomAccessible, provided it is of type BoolType.

Unwrappers.MaskIntervalAsRandomAccessibleIntervalUnwrapper - Class in net.imagej.roi

Unwraps MaskIntervalAsRandomAccessibleInterval, provided it is of type BoolType.

Unwrappers.RandomAccessibleAsMaskUnwrapper - Class in net.imagej.roi

Unwraps RandomAccessibleAsMask, provided it is of type BoolType.

Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper - Class in net.imagej.roi

Unwraps RandomAccessibleIntervalAsMaskInterval, provided it is of type BoolType.

Unwrappers.RealMaskAsRealRandomAccessibleUnwrapper - Class in net.imagej.roi

Unwraps RealMaskAsRealRandomAccessible, provided it is of type BoolType.

Unwrappers.RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper - Class in net.imagej.roi

Unwraps RealMaskRealIntervalAsRealRandomAccessibleRealInterval, provided it is of type BoolType.

Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper - Class in net.imagej.roi

Unwraps RealRandomAccessibleAsRealMask, provided it is of type BoolType.

Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper - Class in net.imagej.roi

Unwraps RealRandomAccessibleRealIntervalAsRealMaskRealInterval, provided it is of type BoolType.

unZip(String, File, LogService, StatusService) - Static method in class net.imagej.tensorflow.util.UnpackUtil

unZip(File, ByteArray, LogService, StatusService) - Static method in class net.imagej.tensorflow.util.UnpackUtil

update() - Method in interface net.imagej.Data

Informs interested parties that the data object has undergone a non-structural change, such as sample values being updated.

update() - Method in interface net.imagej.Dataset

Informs interested parties that the data object has undergone a non-structural change, such as sample values being updated.

update() - Method in class net.imagej.DefaultDataset

update() - Method in interface net.imagej.display.DataView

Updates and redraws the view onscreen.

update() - Method in class net.imagej.display.DefaultDatasetView

update() - Method in class net.imagej.display.DefaultImageDisplay

update() - Method in class net.imagej.display.DefaultOverlayView

update() - Method in class net.imagej.ImageJ

Gets this application context's UpdateService.

update() - Method in class net.imagej.interval.CombinedRealInterval

update(String, double) - Static method in class net.imagej.launcher.SplashScreen

update(int, ImagePlus, Roi) - Method in class net.imagej.legacy.convert.TableWrapper

update() - Method in class net.imagej.overlay.AbstractOverlay

update() - Method in interface net.imagej.overlay.Overlay

Informs interested parties that the data object has undergone a non-structural change, such as sample values being updated.

update() - Method in class net.imagej.space.CombinedSpace

Recomputes the combined space based on its current constituents.

update() - Method in class net.imagej.ui.swing.viewer.image.DatasetFigureView

update() - Method in interface net.imagej.ui.swing.viewer.image.FigureView

Updates the figure to match the linked data view.

update() - Method in class net.imagej.ui.swing.viewer.image.OverlayFigureView

update(List<String>) - Method in class net.imagej.updater.CommandLine

update(List<String>, boolean) - Method in class net.imagej.updater.CommandLine

update(List<String>, boolean, boolean) - Method in class net.imagej.updater.CommandLine

UPDATE_DIRECTORY - Static variable in class net.imagej.updater.util.UpdaterUtil

updateable(boolean) - Method in class net.imagej.updater.FilesCollection

updateablePlatforms - Variable in class net.imagej.updater.util.UpdaterUtil

updateAndReturnROIs(OMEROLocation, TreeNode<?>, long) - Method in class net.imagej.omero.DefaultOMEROService

updateAndReturnROIs(OMEROLocation, TreeNode<?>, long) - Method in interface net.imagej.omero.OMEROService

Converts the given TreeNode to OMERO ROI(s), creating new Objects on the server only for ROIs which didn't previously exist.

UpdateCanceledException - Exception in net.imagej.updater.util

An exception thrown when an operation of the Updater is canceled.

UpdateCanceledException() - Constructor for exception net.imagej.updater.util.UpdateCanceledException

updateConflictList() - Method in class net.imagej.ui.swing.updater.ConflictDialog

updateConflictList() - Method in class net.imagej.ui.swing.updater.ResolveDependencies

updateDataset(Dataset, ImagePlus) - Method in class net.imagej.legacy.translate.CompositeHarmonizer

Sets the Dataset's number of composite channels to display simultaneously based on an input ImagePlus's makeup.

updateDataset(Dataset, ImagePlus) - Method in interface net.imagej.legacy.translate.DataHarmonizer

updateDataset(Dataset, ImagePlus) - Method in class net.imagej.legacy.translate.MetadataHarmonizer

Sets a Dataset's metadata to match a given ImagePlus.

updateDataset(Dataset) - Method in class net.imagej.plugins.commands.binary.AbstractMorphOpsCommand

updateDataset(Dataset) - Method in class net.imagej.plugins.commands.binary.CloseBinaryImage

updateDataset(Dataset) - Method in class net.imagej.plugins.commands.binary.DilateBinaryImage

updateDataset(Dataset) - Method in class net.imagej.plugins.commands.binary.ErodeBinaryImage

updateDataset(Dataset) - Method in class net.imagej.plugins.commands.binary.OpenBinaryImage

updateDependencies(FileObject) - Method in class net.imagej.updater.FilesCollection

updateDigest(InputStream, MessageDigest) - Static method in class net.imagej.updater.util.UpdaterUtil

updateDisplay(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.ColorTableHarmonizer

Sets the ColorTables of the active view of an modern ImageJ ImageDisplay from the LUTs of a given ImagePlus or CompositeImage.

updateDisplay(ImageDisplay, ImagePlus) - Method in interface net.imagej.legacy.translate.DisplayHarmonizer

updateDisplay(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.Harmonizer

Changes the data within a ImageDisplay to match data in an ImagePlus.

updateDisplay(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.NameHarmonizer

Sets the name of the Display to the title of the given ImagePlus.

updateDisplay(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.OverlayHarmonizer

Deprecated.

Updates the given ImageDisplay to contain Overlays corresponding to all the given ImagePlus's Rois (both the active Roi and the Rois stored in ImageJ 1.x's current Overlay).

updateDisplay(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.PositionHarmonizer

Updates the given ImageDisplay's position to match that of its paired ImagePlus.

updateFigure(OverlayView, F) - Method in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter

updateFigure(OverlayView, AngleJHotDrawAdapter.AngleFigure) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter

updateFigure(OverlayView, ImageFigure) - Method in class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter

updateFigure(OverlayView, EllipseFigure) - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter

updateFigure(OverlayView, GeneralPathFigure) - Method in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter

updateFigure(OverlayView, F) - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter

Update the appearance of the figure to match the overlay

updateFigure(OverlayView, LineFigure) - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter

updateFigure(OverlayView, PointFigure) - Method in class net.imagej.ui.swing.overlay.PointJHotDrawOverlay

updateFigure(OverlayView, BezierFigure) - Method in class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter

updateFigure(OverlayView, BezierFigure) - Method in class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter

updateFigure(OverlayView, RectangleFigure) - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter

updateFilesize() - Method in class net.imagej.updater.UploadableFile

updateFilesTable() - Method in class net.imagej.ui.swing.updater.UpdaterFrame

updateFromLocal(List<String>) - Method in class net.imagej.updater.Checksummer

updateFromLocal() - Method in class net.imagej.updater.Checksummer

updateInput(ModuleItem<?>) - Method in class net.imagej.command.InteractiveImageCommand

updateLabel() - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer

Recalculate the label text and update it on the panel.

updateLastUsed() - Method in class net.imagej.server.services.DefaultObjectInfo

updateLastUsed() - Method in interface net.imagej.server.services.ObjectInfo

updateLegacyImage(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.ColorTableHarmonizer

Sets LUTs of an ImagePlus or CompositeImage.

updateLegacyImage(Dataset, ImagePlus) - Method in class net.imagej.legacy.translate.CompositeHarmonizer

updateLegacyImage(Dataset, ImagePlus) - Method in interface net.imagej.legacy.translate.DataHarmonizer

updateLegacyImage(ImageDisplay, ImagePlus) - Method in interface net.imagej.legacy.translate.DisplayHarmonizer

updateLegacyImage(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.Harmonizer

Changes the data within an ImagePlus to match data in a ImageDisplay.

updateLegacyImage(Dataset, ImagePlus) - Method in class net.imagej.legacy.translate.MetadataHarmonizer

Sets an ImagePlus' metadata to match a given Dataset.

updateLegacyImage(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.NameHarmonizer

Sets the title of the ImagePlus to the name of the given Display.

updateLegacyImage(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.OverlayHarmonizer

Deprecated.

Updates the given ImagePlus's Roi and Overlay to match the modern ImageJ Overlays being visualized in the given ImageDisplay.

updateLegacyImage(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.PositionHarmonizer

Updates the given ImagePlus's position to match that of its paired ImageDisplay.

updateLegacyImageJSettingsFromModernImageJ() - Method in class net.imagej.legacy.OptionsSynchronizer

Updates legacy ImageJ settings and preferences to reflect values set in modern ImageJ dialogs.

updateMappings() - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel

updateModernImageJSettingsFromLegacyImageJ() - Method in class net.imagej.legacy.OptionsSynchronizer

Updates modern ImageJ options dialog settings to reflect values set by legacy ImageJ plugins.

updateOverlay(F, OverlayView) - Method in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter

updateOverlay(AngleJHotDrawAdapter.AngleFigure, OverlayView) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter

updateOverlay(EllipseFigure, OverlayView) - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter

updateOverlay(GeneralPathFigure, OverlayView) - Method in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter

updateOverlay(F, OverlayView) - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter

Update the overlay to match the appearance of the figure

updateOverlay(LineFigure, OverlayView) - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter

updateOverlay(PointFigure, OverlayView) - Method in class net.imagej.ui.swing.overlay.PointJHotDrawOverlay

updateOverlay(BezierFigure, OverlayView) - Method in class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter

updateOverlay(BezierFigure, OverlayView) - Method in class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter

updateOverlay(RectangleFigure, OverlayView) - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter

UPDATER_JAR_NAME - Static variable in class net.imagej.updater.Installer

updateRecentMenu(String) - Method in class net.imagej.legacy.IJ1Helper

updaterFrame - Variable in class net.imagej.ui.swing.updater.ConflictDialog

updaterFrame - Variable in class net.imagej.ui.swing.updater.FileTable

updaterFrame - Variable in class net.imagej.ui.swing.updater.SitesDialog

UpdaterFrame - Class in net.imagej.ui.swing.updater

TODO

UpdaterFrame(LogService, UploaderService, FilesCollection) - Constructor for class net.imagej.ui.swing.updater.UpdaterFrame

updateROIs(OMEROLocation, TreeNode<?>, long) - Method in class net.imagej.omero.DefaultOMEROService

updateROIs(OMEROLocation, TreeNode<?>, long) - Method in interface net.imagej.omero.OMEROService

Converts the given TreeNode to OMERO ROIs(s).

UpdaterUI - Interface in net.imagej.updater

A placeholder interface for graphical user interfaces for the updater.

UpdaterUIPlugin - Interface in net.imagej.updater

Deprecated.
Use UpdaterUI instead.

UpdaterUserInterface - Class in net.imagej.updater.util

A user interface abstraction.

UpdaterUserInterface() - Constructor for class net.imagej.updater.util.UpdaterUserInterface

UpdaterUserInterface.StderrInterface - Class in net.imagej.updater.util

UpdaterUtil - Class in net.imagej.updater.util

Utility methods for use with the net.imagej.updater package and subpackages.

UpdaterUtil(File) - Constructor for class net.imagej.updater.util.UpdaterUtil

UpdateService - Interface in net.imagej.updater

Interface for services that manage ImageJ updates.

updateSettings(OverlaySettings) - Method in class net.imagej.options.OptionsOverlay

Updates the given overlay settings to match these options.

updateSite - Variable in class net.imagej.updater.FileObject

UpdateSite - Class in net.imagej.updater

Update sites for the updater.

UpdateSite(String, String, String, String, String, String, long) - Constructor for class net.imagej.updater.UpdateSite

updateSite() - Method in class net.imagej.updater.URLChange

updateSites - Variable in class net.imagej.ui.swing.updater.UpdaterFrame

updatesTooFast() - Method in class net.imagej.ui.swing.updater.ProgressDialog

updateTheUpdater(FilesCollection, Progress) - Static method in class net.imagej.updater.Installer

updateTheUpdater(FilesCollection, Progress, CommandService) - Static method in class net.imagej.updater.Installer

updateTitle() - Method in class net.imagej.legacy.display.ImagePlusDisplayViewer

updateTitle() - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer

updateTitle() - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer

updateUploadTimestamp(long) - Method in class net.imagej.updater.FilesUploader

updateValues() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties

Updates all elements from the first overlay within the list of overlays.

upload(List<Uploadable>, List<String>) - Method in class net.imagej.plugins.uploaders.ssh.SFTPFileUploader

upload(List<Uploadable>, List<String>) - Method in class net.imagej.plugins.uploaders.ssh.SSHFileUploader

upload(List<Uploadable>, List<String>) - Method in class net.imagej.plugins.uploaders.webdav.WebDAVUploader

upload() - Method in class net.imagej.ui.swing.updater.UpdaterFrame

upload(List<Uploadable>, List<String>) - Method in class net.imagej.updater.AbstractUploader

Upload - Class in net.imagej.updater.action

The upload action.

Upload(String) - Constructor for class net.imagej.updater.action.Upload

upload(List<String>) - Method in class net.imagej.updater.CommandLine

upload(Progress) - Method in class net.imagej.updater.FilesUploader

upload(List<Uploadable>, List<String>) - Method in class net.imagej.updater.FileUploader

upload(List<Uploadable>, List<String>) - Method in interface net.imagej.updater.Uploader

TODO

uploadable() - Method in class net.imagej.updater.FilesCollection

uploadable(boolean) - Method in class net.imagej.updater.FilesCollection

Gets the list of uploadable files.

Uploadable - Interface in net.imagej.updater

A container representing one file to upload.

UploadableFile - Class in net.imagej.updater

A class used for uploading local files.

UploadableFile(FilesCollection, FileObject) - Constructor for class net.imagej.updater.UploadableFile

UploadableFile(File, String) - Constructor for class net.imagej.updater.UploadableFile

UploadableFile(File, String, String) - Constructor for class net.imagej.updater.UploadableFile

uploadAndReturnROIs(OMEROLocation, TreeNode<?>, long) - Method in class net.imagej.omero.DefaultOMEROService

uploadAndReturnROIs(OMEROLocation, TreeNode<?>, long) - Method in interface net.imagej.omero.OMEROService

Converts the given TreeNode to OMERO ROI(s), and uploads them all as new Objects to the server.

uploadCompleteSite(List<String>) - Method in class net.imagej.updater.CommandLine

uploadDir - Variable in class net.imagej.updater.AbstractUploader

uploader() - Method in class net.imagej.ImageJ

Gets this application context's UploaderService.

Uploader - Interface in net.imagej.updater

Interface for ImageJ upload mechanisms.

UploaderService - Interface in net.imagej.updater

Interface for service that manages available ImageJ upload mechanisms.

uploadFile(InputStream, FormDataContentDisposition, String) - Method in class net.imagej.server.resources.ObjectsResource

Reads the user-uploaded file into the imagej runtime.

uploadImage(OMEROLocation, Dataset, boolean, TreeNode<?>, boolean, boolean, List<Table<?, ?>>, String[], long) - Method in class net.imagej.omero.DefaultOMEROService

uploadImage(client, Dataset) - Method in class net.imagej.omero.DefaultOMEROService

uploadImage(OMEROLocation, Dataset, boolean, TreeNode<?>, boolean, boolean, List<Table<?, ?>>, String[], long) - Method in interface net.imagej.omero.OMEROService

Uploads the given image to OMERO, and optionally uploads the given ROIs and tables.

uploadImage(client, Dataset) - Method in interface net.imagej.omero.OMEROService

Uploads the given ImageJ Dataset's image to OMERO, returning the new image ID on the OMERO server.

uploadImageAttachments(OMEROLocation, long, boolean, boolean, boolean, TreeNode<?>, List<Table<?, ?>>, String[]) - Method in class net.imagej.omero.DefaultOMEROService

uploadImageAttachments(OMEROLocation, long, boolean, boolean, boolean, TreeNode<?>, List<Table<?, ?>>, String[]) - Method in interface net.imagej.omero.OMEROService

Uploads the attachments to the OMERO server, and attaches them to the image associated with the given id.

uploadROIs(OMEROLocation, TreeNode<?>, long) - Method in class net.imagej.omero.DefaultOMEROService

uploadROIs(OMEROLocation, TreeNode<?>, long) - Method in interface net.imagej.omero.OMEROService

Converts the given TreeNode to OMERO ROI(s), uploads them to the OMEROServer, and attaches them to the image with the specified ID.

uploadTable(OMEROLocation, String, Table<?, ?>, long) - Method in class net.imagej.omero.DefaultOMEROService

uploadTable(OMEROLocation, String, Table<?, ?>, long) - Method in interface net.imagej.omero.OMEROService

Uploads an ImageJ table to OMERO, returning the new table ID on the OMERO server.

upperBound(T) - Method in interface net.imagej.types.DataType

Sets a given variable to the upper bound of the underlying NumericType.

upperBound(ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat

upperBound(Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger

upperBound(ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger

upperBound(UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger

upperBound(BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger

upperBound(FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat

upperBound(IntType) - Method in class net.imagej.types.DataType32BitSignedInteger

upperBound(UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger

upperBound(ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat

upperBound(DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat

upperBound(LongType) - Method in class net.imagej.types.DataType64BitSignedInteger

upperBound(ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger

upperBound(UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger

upperBound(NativeBoolType) - Method in class net.imagej.types.DataTypeBoolean

upperBound(BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat

upperBound(PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat

upperBound(UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger

upToDate() - Method in class net.imagej.updater.FilesCollection

UpToDate - Class in net.imagej.updater

This class helps to determine the status of the current ImageJ installation.

UpToDate() - Constructor for class net.imagej.updater.UpToDate

UpToDate.Result - Enum in net.imagej.updater

url - Static variable in class net.imagej.plugins.commands.app.ImageJWebsite

URLChange - Class in net.imagej.updater

Class indicating automated changes to an update site.

urlsMap - Static variable in class net.imagej.launcher.ClassLoaderPlus

usage() - Method in class net.imagej.updater.CommandLine

userExists(String) - Method in class net.imagej.util.MediaWikiClient

userSiteConvertToHTTP(String) - Static method in class net.imagej.updater.util.HTTPSUtil

usesGPU() - Method in class net.imagej.tensorflow.TensorFlowVersion

useSystemProxies() - Static method in class net.imagej.updater.util.UpdaterUtil

useUserUnits() - Method in class net.imagej.plugins.commands.imglib.ResliceImage

Gets whether reslice spacing field values are in user units or pixel units.

useUserUnits() - Method in class net.imagej.plugins.commands.imglib.TranslateImage

Gets whether input deltas field values are in user units or pixel units.

util - Variable in class net.imagej.updater.FilesCollection

util - Variable in class net.imagej.updater.util.DropboxURLMapper

Utils - Class in net.imagej.server

V

v(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

v() - Method in interface net.imagej.mesh.Vertex

V value of vertex texture coordinate, as a double.

v(long) - Method in interface net.imagej.mesh.Vertices

V value of vertex texture coordinate, as a double.

v0x() - Method in interface net.imagej.mesh.Triangle

X coordinate of triangle's first vertex, as a double.

v0xf() - Method in interface net.imagej.mesh.Triangle

X coordinate of triangle's first vertex, as a float.

v0y() - Method in interface net.imagej.mesh.Triangle

Y coordinate of triangle's first vertex, as a double.

v0yf() - Method in interface net.imagej.mesh.Triangle

Y coordinate of triangle's first vertex, as a float.

v0z() - Method in interface net.imagej.mesh.Triangle

Z coordinate of triangle's first vertex, as a double.

v0zf() - Method in interface net.imagej.mesh.Triangle

Z coordinate of triangle's first vertex, as a float.

v1x() - Method in interface net.imagej.mesh.Triangle

X coordinate of triangle's second vertex, as a double.

v1xf() - Method in interface net.imagej.mesh.Triangle

X coordinate of triangle's second vertex, as a float.

v1y() - Method in interface net.imagej.mesh.Triangle

Y coordinate of triangle's second vertex, as a double.

v1yf() - Method in interface net.imagej.mesh.Triangle

Y coordinate of triangle's second vertex, as a float.

v1z() - Method in interface net.imagej.mesh.Triangle

Z coordinate of triangle's second vertex, as a double.

v1zf() - Method in interface net.imagej.mesh.Triangle

Z coordinate of triangle's second vertex, as a float.

v2x() - Method in interface net.imagej.mesh.Triangle

X coordinate of triangle's third vertex, as a double.

v2xf() - Method in interface net.imagej.mesh.Triangle

X coordinate of triangle's third vertex, as a float.

v2y() - Method in interface net.imagej.mesh.Triangle

Y coordinate of triangle's third vertex, as a double.

v2yf() - Method in interface net.imagej.mesh.Triangle

Y coordinate of triangle's third vertex, as a float.

v2z() - Method in interface net.imagej.mesh.Triangle

Z coordinate of triangle's third vertex, as a double.

v2zf() - Method in interface net.imagej.mesh.Triangle

Z coordinate of triangle's third vertex, as a float.

validate(boolean) - Method in class net.imagej.updater.XMLFileWriter

validate(InputStream) - Method in class net.imagej.updater.XMLFileWriter

validURL(String) - Method in class net.imagej.ui.swing.updater.SitesDialog

value(double, String, String) - Method in class net.imagej.units.DefaultUnitService

value(double, String, String) - Method in interface net.imagej.units.UnitService

Returns a value after conversion between two compatible types of units.

valueChanged(ListSelectionEvent) - Method in class net.imagej.ui.swing.updater.UpdaterFrame

valueEquals(BigComplex) - Method in class net.imagej.types.BigComplex

valueEquals(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType

valueEquals(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType

valueEquals(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType

valueOf(String) - Static method in enum net.imagej.display.ColorMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.notebook.NotebookService.ValueScaling

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.omero.OMERORef

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation2D

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation3D

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.ops.OpCandidate.StatusCode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.ops.special.SpecialOp.Flavor

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.overlay.CompositeOverlay.Operation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.overlay.Overlay.ArrowStyle

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.overlay.Overlay.LineStyle

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.overlay.TextOverlay.Justification

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin.NeighborhoodType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.render.TextRenderer.FontFamily

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.render.TextRenderer.FontStyle

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.render.TextRenderer.TextJustification

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.ui.swing.overlay.BezierPathFunctions.OP

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.ui.swing.updater.ViewOptions.Option

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.ui.viewer.image.AbstractImageDisplayViewer.ZoomScaleOption

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.updater.Conflicts.Conflict.Severity

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.updater.Diff.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.updater.FileObject.Action

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.updater.FileObject.Status

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.updater.UpToDate.Result

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.updater.util.ByteCodeAnalyzer.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.imagej.updater.util.FilterManifest.Skip

Returns the enum constant of this type with the specified name.

values() - Static method in enum net.imagej.display.ColorMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.notebook.NotebookService.ValueScaling

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.omero.OMERORef

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation2D

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation3D

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.ops.OpCandidate.StatusCode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.ops.special.SpecialOp.Flavor

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.overlay.CompositeOverlay.Operation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.overlay.Overlay.ArrowStyle

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.overlay.Overlay.LineStyle

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.overlay.TextOverlay.Justification

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin.NeighborhoodType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.render.TextRenderer.FontFamily

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.render.TextRenderer.FontStyle

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.render.TextRenderer.TextJustification

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.ui.swing.overlay.BezierPathFunctions.OP

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.ui.swing.updater.ViewOptions.Option

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.ui.viewer.image.AbstractImageDisplayViewer.ZoomScaleOption

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.updater.Conflicts.Conflict.Severity

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.updater.Diff.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.updater.FileObject.Action

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.updater.FileObject.Status

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.updater.UpToDate.Result

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.updater.util.ByteCodeAnalyzer.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.imagej.updater.util.FilterManifest.Skip

Returns an array containing the constants of this enum type, in the order they are declared.

Variable1Axis - Class in net.imagej.axis

Abstract superclass for axes with one variable.

Variable1Axis(AxisType) - Constructor for class net.imagej.axis.Variable1Axis

Variable1Axis(AxisType, String, double) - Constructor for class net.imagej.axis.Variable1Axis

Variable2Axis - Class in net.imagej.axis

Abstract superclass for axes with two variables.

Variable2Axis(AxisType) - Constructor for class net.imagej.axis.Variable2Axis

Variable2Axis(AxisType, String, double, double) - Constructor for class net.imagej.axis.Variable2Axis

Variable3Axis - Class in net.imagej.axis

Abstract superclass for axes with three variables.

Variable3Axis(AxisType) - Constructor for class net.imagej.axis.Variable3Axis

Variable3Axis(AxisType, String, double, double, double) - Constructor for class net.imagej.axis.Variable3Axis

Variable4Axis - Class in net.imagej.axis

Abstract superclass for axes with four variables.

Variable4Axis(AxisType) - Constructor for class net.imagej.axis.Variable4Axis

Variable4Axis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.Variable4Axis

VariableAxis - Class in net.imagej.axis

An CalibratedAxis whose calibration is defined by an equation with one or more variables.

VariableAxis(AxisType) - Constructor for class net.imagej.axis.VariableAxis

VariableAxis(AxisType, String) - Constructor for class net.imagej.axis.VariableAxis

variance(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

variance(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace

variance(IterableInterval<T>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "variance" filter operation on the given arguments.

variance(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, T>) - Method in class net.imagej.ops.filter.FilterNamespace

Executes the "variance" filter operation on the given arguments.

variance(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

variance(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace

variance() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo

VarianceFilterOp<I,O> - Interface in net.imagej.ops.filter.variance

A typed "variance" filter.

vars() - Method in class net.imagej.axis.VariableAxis

Gets the set of variables with assigned values.

VectorAccelerator<T extends RealType<T> & NativeType<T>> - Class in net.imagej.ops.deconvolve.accelerate

Vector Accelerator implements acceleration scheme described in Acceleration of iterative image restoration algorithms David S.C.

VectorAccelerator() - Constructor for class net.imagej.ops.deconvolve.accelerate.VectorAccelerator

verify(Installer.Download) - Method in class net.imagej.updater.Installer

verifyTimestamp() - Method in class net.imagej.updater.FilesUploader

VerifyTimestamp() - Constructor for class net.imagej.updater.FilesUploader.VerifyTimestamp

verifyUnchanged(Uploadable, boolean) - Method in class net.imagej.updater.FilesUploader

version() - Static method in class net.imagej.matlab.ImageJMATLAB

Get the version of ImageJMATLAB.

Version(FileObject.Version) - Constructor for class net.imagej.updater.FileObject.Version

versionFromClassPathJAR() - Static method in class net.imagej.tensorflow.util.TensorFlowUtil

vertex(int) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

vertex(int) - Method in class net.imagej.legacy.convert.roi.polygon2d.UnmodifiablePolygonRoiWrapper

vertex(int) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

vertex(int) - Method in class net.imagej.legacy.convert.roi.polyline.UnmodifiablePolylineRoiWrapper

Vertex - Interface in net.imagej.mesh

One vertex of a Vertices collection.

vertex(int) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape

Vertex - Class in net.imagej.ops.geom.geom3d.mesh

Represents vertices of the hull, as well as the points from which it is formed.

Vertex(double, double, double) - Constructor for class net.imagej.ops.geom.geom3d.mesh.Vertex

vertex0(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles

vertex0(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles

vertex0(long) - Method in class net.imagej.mesh.nio.BufferMesh.Triangles

vertex0() - Method in interface net.imagej.mesh.Triangle

Index of first vertex in the triangle.

vertex0(long) - Method in interface net.imagej.mesh.Triangles

Index of first vertex in a triangle.

vertex1(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles

vertex1(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles

vertex1(long) - Method in class net.imagej.mesh.nio.BufferMesh.Triangles

vertex1() - Method in interface net.imagej.mesh.Triangle

Index of second vertex in the triangle.

vertex1(long) - Method in interface net.imagej.mesh.Triangles

Index of second vertex in a triangle.

vertex2(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles

vertex2(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles

vertex2(long) - Method in class net.imagej.mesh.nio.BufferMesh.Triangles

vertex2() - Method in interface net.imagej.mesh.Triangle

Index of third vertex in the triangle.

vertex2(long) - Method in interface net.imagej.mesh.Triangles

Index of third vertex in a triangle.

VertexInterpolator - Interface in net.imagej.ops.geom.geom3d.mesh

vertexInterpolator(int[], int[], double, double, double) - Method in class net.imagej.ops.geom.GeomNamespace

vertexInterpolator(int[], int[], double, double) - Method in class net.imagej.ops.geom.GeomNamespace

verticalPanel() - Static method in class net.imagej.ui.swing.updater.SwingTools

vertices() - Method in interface net.imagej.mesh.Mesh

The mesh's collection of vertices.

vertices() - Method in class net.imagej.mesh.naive.NaiveDoubleMesh

Vertices() - Constructor for class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

vertices() - Method in class net.imagej.mesh.naive.NaiveFloatMesh

Vertices() - Constructor for class net.imagej.mesh.naive.NaiveFloatMesh.Vertices

vertices() - Method in class net.imagej.mesh.nio.BufferMesh

Vertices(FloatBuffer, FloatBuffer, FloatBuffer) - Constructor for class net.imagej.mesh.nio.BufferMesh.Vertices

Vertices - Interface in net.imagej.mesh

Collection of vertices for a Mesh.

vertices(Polygon2D) - Static method in class net.imagej.ops.geom.GeomUtils

verticesCount(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

verticesCount(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

verticesCount(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

verticesCount(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

verticesCountConvexHull(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

verticesCountConvexHull(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace

verticesCountConvexHull(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

verticesCountConvexHull(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

verts() - Method in class net.imagej.mesh.nio.BufferMesh.Vertices

vf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

vf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices

vf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices

vf() - Method in interface net.imagej.mesh.Vertex

V value of vertex texture coordinate, as a float.

vf(long) - Method in interface net.imagej.mesh.Vertices

V value of vertex texture coordinate, as a float.

view(UserInterface, Display<?>) - Method in class net.imagej.legacy.display.ImagePlusDisplayViewer

view(DisplayWindow, Display<?>) - Method in class net.imagej.legacy.display.ImagePlusDisplayViewer

view(UserInterface, Display<?>) - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer

view(DisplayWindow, Display<?>) - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer

view(RandomAccessibleInterval<?>) - Method in interface net.imagej.notebook.NotebookService

Conveniently wraps a RandomAccessibleInterval into a DefaultDatasetView.

view(RandomAccessibleInterval<?>, double, double) - Method in interface net.imagej.notebook.NotebookService

Conveniently wraps a RandomAccessibleInterval into a DefaultDatasetView and presets the channel ranges to the given minimum and maximum values.

view(RandomAccessibleInterval<?>, double[], double[]) - Method in interface net.imagej.notebook.NotebookService

Conveniently wraps a RandomAccessibleInterval into a DefaultDatasetView and presets the channel ranges to the given minimum and maximum arrays.

view(DisplayWindow, Display<?>) - Method in class net.imagej.ui.swing.mdi.viewer.SwingMdiImageDisplayViewer

view(DisplayWindow, Display<?>) - Method in class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer

view(DisplayWindow, Display<?>) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer

viewChanged() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast

Called when view changes.

viewOptions - Variable in class net.imagej.ui.swing.updater.UpdaterFrame

ViewOptions - Class in net.imagej.ui.swing.updater

TODO

ViewOptions() - Constructor for class net.imagej.ui.swing.updater.ViewOptions

ViewOptions.CustomOption - Interface in net.imagej.ui.swing.updater

ViewOptions.Option - Enum in net.imagej.ui.swing.updater

viewOptionsPanel - Variable in class net.imagej.ui.swing.updater.UpdaterFrame

ViewportResizeEvent - Class in net.imagej.display.event

An event indicating an ImageCanvas viewport has changed size.

ViewportResizeEvent(ImageCanvas) - Constructor for class net.imagej.display.event.ViewportResizeEvent

viewRealType(RandomAccessibleInterval<T>) - Method in class net.imagej.notebook.DefaultNotebookService

viewRealType(RandomAccessibleInterval<T>) - Method in interface net.imagej.notebook.NotebookService

Conveniently wraps a RandomAccessibleInterval of RealType into a DefaultDatasetView and presets the channel ranges to the given minimum and maximum arrays.

visitLocation(int, int, double) - Method in interface net.imagej.plugins.commands.neigh.Neighborhood3x3Watcher

Called 9 times (3x3), once for each value at a location so implementer can update state for the local neighborhood.

voxelEdgeFaceIntersections(EulerCorrection.Traverser) - Static method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection

Count the intersections between voxel edges in each 2x2 neighborhood and the faces lining the stack

voxelEdgeIntersections(EulerCorrection.Traverser) - Static method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection

Count the number of intersections between voxels in each 2x1 neighborhood and the the edges of the stack

voxelFaceIntersections(EulerCorrection.Traverser) - Static method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection

Count the intersections between voxels in each 2x2 neighborhood and the faces lining the stack

voxelization(Mesh, int, int, int) - Method in class net.imagej.ops.geom.GeomNamespace

voxelization(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace

voxelization(Mesh, int) - Method in class net.imagej.ops.geom.GeomNamespace

voxelization(Mesh, int, int) - Method in class net.imagej.ops.geom.GeomNamespace

W

waitCursor - Variable in class net.imagej.ui.swing.updater.DiffFile

waitForFakeDialog(String, Component) - Static method in class net.imagej.ui.swing.updater.SwingTools

WandTool - Class in net.imagej.plugins.tools

TODO

WandTool() - Constructor for class net.imagej.plugins.tools.WandTool

warn(String) - Method in class net.imagej.ui.swing.updater.DiffView

Add some warnings.

warn(String) - Method in class net.imagej.ui.swing.updater.UpdaterFrame

warning(SAXParseException) - Method in class net.imagej.updater.XMLFileErrorHandler

wasAltKeyDown() - Method in class net.imagej.plugins.tools.PixelRecorder

Returns true if the alt key was down during the mouse event that was recorded.

wasCanceled() - Method in class imagej.patcher.HeadlessGenericDialog

Deprecated.

wasCanceled() - Method in class net.imagej.patcher.HeadlessGenericDialog

wasCanceled - Variable in class net.imagej.ui.swing.updater.ConflictDialog

wasOKed() - Method in class imagej.patcher.HeadlessGenericDialog

Deprecated.

wasOKed() - Method in class net.imagej.patcher.HeadlessGenericDialog

watershed(ImgLabeling<Integer, IntType>, RandomAccessibleInterval<T>, boolean, boolean) - Method in class net.imagej.ops.image.ImageNamespace

Executes the "watershed" operation on the given arguments.

watershed(RandomAccessibleInterval<T>, boolean, boolean) - Method in class net.imagej.ops.image.ImageNamespace

Executes the "watershed" operation on the given arguments.

watershed(ImgLabeling<Integer, IntType>, RandomAccessibleInterval<T>, boolean, boolean, RandomAccessibleInterval) - Method in class net.imagej.ops.image.ImageNamespace

Executes the "watershed" operation on the given arguments.

watershed(RandomAccessibleInterval, boolean, boolean, double...) - Method in class net.imagej.ops.image.ImageNamespace

watershed(ImgLabeling<Integer, IntType>, RandomAccessibleInterval, boolean, boolean, double...) - Method in class net.imagej.ops.image.ImageNamespace

watershed(ImgLabeling<Integer, IntType>, RandomAccessibleInterval, boolean, boolean, double[], RandomAccessibleInterval) - Method in class net.imagej.ops.image.ImageNamespace

watershed(RandomAccessibleInterval<T>, boolean, boolean, double) - Method in class net.imagej.ops.image.ImageNamespace

watershed(ImgLabeling<Integer, IntType>, RandomAccessibleInterval<T>, boolean, boolean, double) - Method in class net.imagej.ops.image.ImageNamespace

watershed(ImgLabeling<Integer, IntType>, RandomAccessibleInterval<T>, boolean, boolean, double, RandomAccessibleInterval) - Method in class net.imagej.ops.image.ImageNamespace

watershed(RandomAccessibleInterval<T>, ImgLabeling<Integer, IntType>, boolean, boolean) - Method in class net.imagej.ops.image.ImageNamespace

Executes the "watershedSeeded" operation on the given arguments.

watershed(ImgLabeling<Integer, IntType>, RandomAccessibleInterval<T>, ImgLabeling<Integer, IntType>, boolean, boolean) - Method in class net.imagej.ops.image.ImageNamespace

Executes the "watershedSeeded" operation on the given arguments.

watershed(ImgLabeling<Integer, IntType>, RandomAccessibleInterval<T>, ImgLabeling<Integer, IntType>, boolean, boolean, RandomAccessibleInterval) - Method in class net.imagej.ops.image.ImageNamespace

Executes the "watershedSeeded" operation on the given arguments.

Watershed<T extends RealType<T>,B extends BooleanType> - Class in net.imagej.ops.image.watershed

The Watershed algorithm segments and labels a grayscale image analogous to a heightmap.

Watershed() - Constructor for class net.imagej.ops.image.watershed.Watershed

WatershedBinary<T extends BooleanType<T>,B extends BooleanType> - Class in net.imagej.ops.image.watershed

The Watershed algorithm segments and labels a grayscale image analogous to a heightmap.

WatershedBinary() - Constructor for class net.imagej.ops.image.watershed.WatershedBinary

WatershedBinarySingleSigma<T extends BooleanType<T>,B extends BooleanType> - Class in net.imagej.ops.image.watershed

The Watershed algorithm segments and labels a grayscale image analogous to a heightmap.

WatershedBinarySingleSigma() - Constructor for class net.imagej.ops.image.watershed.WatershedBinarySingleSigma

WatershedSeeded<T extends RealType<T>,B extends BooleanType> - Class in net.imagej.ops.image.watershed

The Watershed algorithm segments and labels a grayscale image analogous to a heightmap.

WatershedSeeded() - Constructor for class net.imagej.ops.image.watershed.WatershedSeeded

wavelengthToColor(int) - Static method in class net.imagej.plugins.commands.display.SpectralComposite

Converts a wavelength of light to an RGB color.

WebClientDemo - Class in net.imagej.server.external

WebClientDemo() - Constructor for class net.imagej.server.external.WebClientDemo

WebCommandInfo - Class in net.imagej.server

WebCommandInfo(CommandInfo, Module) - Constructor for class net.imagej.server.WebCommandInfo

WebCommandModuleItem<T> - Class in net.imagej.server

WebCommandModuleItem(CommandInfo, Field) - Constructor for class net.imagej.server.WebCommandModuleItem

WebDAVUploader - Class in net.imagej.plugins.uploaders.webdav

Uploads files to an update server using WebDAV.

WebDAVUploader() - Constructor for class net.imagej.plugins.uploaders.webdav.WebDAVUploader

WHITE - Static variable in class net.imagej.plugins.commands.binary.Binarize

widths - Variable in class net.imagej.ui.swing.updater.SitesDialog.DataModel

willBeUpToDate() - Method in class net.imagej.updater.FileObject

willNotBeInstalled() - Method in class net.imagej.updater.FileObject

window() - Method in class net.imagej.ImageJ

Gets this application context's WindowService.

WindowService - Interface in net.imagej.display

Interface for service that keeps track of open windows, including management of the Windows menu.

WithinRadiusOfPointSetOriginCondition - Class in net.imagej.plugins.commands.assign.noisereduce

A Condition that returns true when a long[] point is within a given radius of the origin of a given PointSet.

WithinRadiusOfPointSetOriginCondition(long, PointSet) - Constructor for class net.imagej.plugins.commands.assign.noisereduce.WithinRadiusOfPointSetOriginCondition

worker - Variable in class net.imagej.ui.swing.updater.DiffFile

wrap(Img<T>) - Static method in class net.imagej.ImgPlus

Ensures the given Img is an ImgPlus, wrapping if necessary.

wrap(Img<T>, ImgPlusMetadata) - Static method in class net.imagej.ImgPlus

Ensures the given Img is an ImgPlus, wrapping if necessary.

wrap(O) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.AbstractOMERORealMaskToIJRoi

wrap(OMEROEllipse) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROEllipseToOvalRoi

wrap(OMEROLine) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROLineToIJLine

wrap(OMEROMask) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROMaskToImageRoi

wrap(OMEROPoint) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPointToPointRoi

wrap(OMEROPolygon) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolygonToPolygonRoi

wrap(OMEROPolyline) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolylineToPolygonRoi

wrap(OMERORectangle) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMERORectangleToRoi

wrap(OMEROText) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROTextToTextRoi

WrappedIntegralImg> - Class in net.imagej.ops.image.integral

Wrapper op for the creation of integral images with net.imglib2.algorithm.integral.IntegralImg.

WrappedIntegralImg() - Constructor for class net.imagej.ops.image.integral.WrappedIntegralImg

WrappedOMEROEllipseToOMEROEllipse() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROEllipseToOMEROEllipse

WrappedOMEROLineToOMEROLine() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROLineToOMEROLine

WrappedOMEROPointToOMEROPoint() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPointToOMEROPoint

WrappedOMEROPolygonToOMEROPolygon() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolygonToOMEROPolygon

WrappedOMEROPolylineToOMEROPolyline() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolylineToOMEROPolyline

WrappedOMERORealMaskToMaskPredicate - Class in net.imagej.omero.legacy.convert

Converts a MaskPredicateWrapper which wraps an OMERORealMask to a MaskPredicate.

WrappedOMERORealMaskToMaskPredicate.AbstractWrappedOMERORealMaskToMaskPredicate<W extends MaskPredicateWrapper<?>,O extends OMERORealMask<?>> - Class in net.imagej.omero.legacy.convert

Abstract base class for converting wrapped OMERORealMasks to OMERORealMask.

WrappedOMERORealMaskToMaskPredicate.OMEROMaskWrapperToOMEROMask - Class in net.imagej.omero.legacy.convert

Converts OMEROMaskWrapper to OMEROMask.

WrappedOMERORealMaskToMaskPredicate.WrappedOMEROEllipseToOMEROEllipse - Class in net.imagej.omero.legacy.convert

Converts EllipsoidWrapper which wraps OMEROEllipse to OMEROEllipse.

WrappedOMERORealMaskToMaskPredicate.WrappedOMEROLineToOMEROLine - Class in net.imagej.omero.legacy.convert

Converts LineWrapper which wraps OMEROLine to OMEROLine.

WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPointToOMEROPoint - Class in net.imagej.omero.legacy.convert

Converts PointMaskWrapper which wraps OMEROPoint to OMEROPoint.

WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolygonToOMEROPolygon - Class in net.imagej.omero.legacy.convert

Converts Polygon2DWrapper which wraps OMEROPolygon to OMEROPolygon.

WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolylineToOMEROPolyline - Class in net.imagej.omero.legacy.convert

Converts PolylineWrapper which wraps OMEROPolyline to OMEROPolyline.

WrappedOMERORealMaskToMaskPredicate.WrappedOMERORectangleToOMERORectangle - Class in net.imagej.omero.legacy.convert

Converts BoxWrapper which wraps OMERORectangle to OMERORectangle.

WrappedOMERORealMaskToMaskPredicate.WrappedOMEROTextToOMEROText - Class in net.imagej.omero.legacy.convert

Converts OMEROTextWrapper which wraps OMEROText to OMEROText.

WrappedOMERORectangleToOMERORectangle() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMERORectangleToOMERORectangle

WrappedOMEROTextToOMEROText() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROTextToOMEROText

WrapperToEllipseRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToEllipseRoiConverter

WrapperToLineConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToLineConverter

WrapperToOvalRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToOvalRoiConverter

WrapperToPointRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToPointRoiConverter

WrapperToPolygonRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToPolygonRoiConverter

WrapperToRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToRoiConverter

WrapperToRotatedRectRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToRotatedRectRoiConverter

WrapperToShapeRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToShapeRoiConverter

WrapperToWritableBoxConverter() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableBoxConverter

WrapperToWritableEllipsoid() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableEllipsoid

WrapperToWritableLine() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableLine

WrapperToWritablePointMask() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePointMask

WrapperToWritablePolygon2D() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePolygon2D

WrapperToWritablePolyline() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePolyline

WrapperToWritableRealPointCollection() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableRealPointCollection

WritableBoxToRoiConverter - Class in net.imagej.legacy.convert.roi.box

Converts a WritableBox to a Roi.

WritableBoxToRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.box.WritableBoxToRoiConverter

WritableEllipsoidToOvalRoiConverter - Class in net.imagej.legacy.convert.roi.ellipsoid

Converts an Ellipsoid to an OvalRoi.

WritableEllipsoidToOvalRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.WritableEllipsoidToOvalRoiConverter

WritableLineToIJLineConverter - Class in net.imagej.legacy.convert.roi.line

Converts a WritableLine to a Line.

WritableLineToIJLineConverter() - Constructor for class net.imagej.legacy.convert.roi.line.WritableLineToIJLineConverter

WritablePointMaskToPointRoiConverter - Class in net.imagej.legacy.convert.roi.point

Converts a WritablePointMask to a PointRoi.

WritablePointMaskToPointRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.point.WritablePointMaskToPointRoiConverter

WritablePolygon2DToPolygonRoiConverter - Class in net.imagej.legacy.convert.roi.polygon2d

Converts a WritablePolygon2D to a PolygonRoi of type POLYGON.

WritablePolygon2DToPolygonRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.polygon2d.WritablePolygon2DToPolygonRoiConverter

WritablePolylineToPolylineRoiConverter - Class in net.imagej.legacy.convert.roi.polyline

Converts an WritablePolyline to an PolygonRoi of type POLYLINE.

WritablePolylineToPolylineRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.polyline.WritablePolylineToPolylineRoiConverter

WritableRealPointCollectionToPointRoiConverter - Class in net.imagej.legacy.convert.roi.point

Converts a WritableRealPointCollection to a PointRoi.

WritableRealPointCollectionToPointRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.point.WritableRealPointCollectionToPointRoiConverter

write(Mesh) - Method in class net.imagej.mesh.io.stl.STLMeshIO

Writes the facets into a byte[] that can then be saved into a file

write() - Method in class net.imagej.updater.FilesCollection

write(OutputStream, boolean) - Method in class net.imagej.updater.XMLFileWriter

writeAscii(Mesh) - Method in class net.imagej.mesh.io.ply.PLYMeshIO

writeBinary(Mesh) - Method in class net.imagej.mesh.io.ply.PLYMeshIO

writeCachedChecksums() - Method in class net.imagej.updater.Checksummer

writeExternal(ObjectOutput) - Method in class net.imagej.AbstractData

writeExternal(ObjectOutput) - Method in class net.imagej.overlay.AbstractOverlay

writeExternal(ObjectOutput) - Method in class net.imagej.overlay.AngleOverlay

writeExternal(ObjectOutput) - Method in class net.imagej.overlay.BinaryMaskOverlay

writeExternal(ObjectOutput) - Method in class net.imagej.overlay.CompositeOverlay

writeExternal(ObjectOutput) - Method in class net.imagej.overlay.EllipseOverlay

writeExternal(ObjectOutput) - Method in class net.imagej.overlay.GeneralPathOverlay

writeExternal(ObjectOutput) - Method in class net.imagej.overlay.LineOverlay

writeExternal(ObjectOutput) - Method in class net.imagej.overlay.PointOverlay

writeExternal(ObjectOutput) - Method in class net.imagej.overlay.PolygonOverlay

writeExternal(ObjectOutput) - Method in class net.imagej.overlay.RectangleOverlay

writeFile(File, String) - Static method in class net.imagej.updater.util.UpdaterUtil

writeJar(File, boolean, boolean) - Static method in class imagej.patcher.LegacyInjector

Deprecated.

Writes a .jar file with the patched classes.

writeJar(File, boolean, boolean) - Static method in class net.imagej.patcher.LegacyInjector

Writes a .jar file with the patched classes.

writeNativeVersionFile(String, String, TensorFlowVersion) - Static method in class net.imagej.tensorflow.util.TensorFlowUtil

Writing the content of the TensorFlowUtil.TFVERSIONFILE indicating which native version of TensorFlow is installed

writePlane(int, long, Plane, Interval) - Method in class net.imagej.omero.OMEROFormat.Writer

Writer() - Constructor for class net.imagej.omero.OMEROFormat.Writer

writeSimpleTag(String, String) - Method in class net.imagej.updater.XMLFileWriter

writeSimpleTag(String, String, AttributesImpl) - Method in class net.imagej.updater.XMLFileWriter

writeSimpleTags(String, Iterable<String>) - Method in class net.imagej.updater.XMLFileWriter

writeSingle(boolean, AttributesImpl, FileObject, long) - Method in class net.imagej.updater.XMLFileWriter

X

X - Static variable in class net.imagej.axis.Axes

Identifies the X dimensional type, representing a dimension in the first (X) spatial dimension.

x(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

x() - Method in interface net.imagej.mesh.Vertex

X position of vertex, as a double.

x(long) - Method in interface net.imagej.mesh.Vertices

X position of a vertex, as a double.

x0 - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser

x1 - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser

xf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

xf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices

xf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices

xf() - Method in interface net.imagej.mesh.Vertex

X position of vertex, as a float.

xf(long) - Method in interface net.imagej.mesh.Vertices

X position of a vertex, as a float.

XML_COMPRESSED - Static variable in class net.imagej.updater.util.UpdaterUtil

XMLFileDownloader - Class in net.imagej.updater

Directly in charge of downloading and saving start-up files (i.e.: XML file and related).

XMLFileDownloader(FilesCollection) - Constructor for class net.imagej.updater.XMLFileDownloader

XMLFileDownloader(FilesCollection, Collection<String>) - Constructor for class net.imagej.updater.XMLFileDownloader

XMLFileErrorHandler - Class in net.imagej.updater

Our own error handler for XML validation.

XMLFileErrorHandler() - Constructor for class net.imagej.updater.XMLFileErrorHandler

XMLFileReader - Class in net.imagej.updater

The XML File Reader reads a locally-cached index of the available file versions.

XMLFileReader(FilesCollection) - Constructor for class net.imagej.updater.XMLFileReader

XMLFileWriter - Class in net.imagej.updater

Writes a db.xml.gz file for local and remote use of the updater.

XMLFileWriter(FilesCollection) - Constructor for class net.imagej.updater.XMLFileWriter

xor(RealMaskRealInterval) - Method in class net.imagej.omero.legacy.text.OMEROText

xor(Predicate<? super RealLocalizable>) - Method in class net.imagej.omero.legacy.text.OMEROText

xor(RealMaskRealInterval) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper

xor(Predicate<? super RealLocalizable>) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper

Xor() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.Xor

Xor() - Constructor for class net.imagej.ops.logic.IIToIIOutputII.Xor

Xor() - Constructor for class net.imagej.ops.logic.IIToRAIOutputII.Xor

xor(boolean, boolean) - Method in class net.imagej.ops.logic.LogicNamespace

xor(T, T) - Method in class net.imagej.ops.logic.LogicNamespace

xor(T, T, T) - Method in class net.imagej.ops.logic.LogicNamespace

xor(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace

xor(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace

xor(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace

xor(IterableInterval<T>, IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace

Xor() - Constructor for class net.imagej.ops.math.BinaryRealTypeMath.Xor

xor(int, int) - Method in class net.imagej.ops.math.MathNamespace

xor(long, long) - Method in class net.imagej.ops.math.MathNamespace

xor(O, I1, I2) - Method in class net.imagej.ops.math.MathNamespace

xor(Overlay) - Method in class net.imagej.overlay.CompositeOverlay

XorDataValuesWith<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign

Fills an output Dataset by XORing an input Dataset with a user defined constant value.

XorDataValuesWith() - Constructor for class net.imagej.plugins.commands.assign.XorDataValuesWith

xSize - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser

XYFlipper - Class in net.imagej.plugins.commands.rotate

XYFlipper is used by Rotate90DegreesLeft and Rotate90DegreesRight

XYFlipper(Dataset, RealRect, XYFlipper.FlipCoordinateTransformer) - Constructor for class net.imagej.plugins.commands.rotate.XYFlipper

xyPlane() - Method in interface net.imagej.display.DatasetView

xyPlane(RandomAccessibleInterval<? extends RealType<?>>) - Method in interface net.imagej.display.DatasetView

xyPlane() - Method in class net.imagej.display.DefaultDatasetView

xyPlane(RandomAccessibleInterval<? extends RealType<?>>) - Method in class net.imagej.display.DefaultDatasetView

XYZPointsIO - Class in net.imagej.mesh.io.xyz

A plugin for reading XYZ files.

XYZPointsIO() - Constructor for class net.imagej.mesh.io.xyz.XYZPointsIO

Y

Y - Static variable in class net.imagej.axis.Axes

Identifies the Y dimensional type, representing a dimension in the second (Y) spatial dimension.

y(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

y() - Method in interface net.imagej.mesh.Vertex

Y position of vertex, as a double.

y(long) - Method in interface net.imagej.mesh.Vertices

Y position of a vertex, as a double.

y0 - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser

y1 - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser

YELLOW - Static variable in class net.imagej.display.ColorTables

Yen() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Yen

yen(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

yen(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

yen(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

yen(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

yen(IterableInterval, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace

yen(IterableInterval, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace

yes() - Method in class net.imagej.updater.FilesCollection

yf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

yf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices

yf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices

yf() - Method in interface net.imagej.mesh.Vertex

Y position of vertex, as a float.

yf(long) - Method in interface net.imagej.mesh.Vertices

Y position of a vertex, as a float.

ySize - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser

Z

Z - Static variable in class net.imagej.axis.Axes

Identifies the Z dimensional type, representing a dimension in the third (Z) spatial dimension.

z(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

z() - Method in interface net.imagej.mesh.Vertex

Z position of vertex, as a double.

z(long) - Method in interface net.imagej.mesh.Vertices

Z position of a vertex, as a double.

z0 - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser

z1 - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser

zernike() - Method in interface net.imagej.ops.OpEnvironment

Gateway into ops of the "zernike" namespace.

ZernikeComputer<T extends RealType<T>> - Class in net.imagej.ops.features.zernike.helper

Computes a specific zernike moment

ZernikeComputer() - Constructor for class net.imagej.ops.features.zernike.helper.ZernikeComputer

ZernikeFeature,O extends RealType<O>> - Interface in net.imagej.ops.features.zernike

Marker interface for zernike ops.

ZernikeMoment - Class in net.imagej.ops.features.zernike.helper

Class to hold a zernike moment, including its polynom, order, repition and complex representation

ZernikeMoment() - Constructor for class net.imagej.ops.features.zernike.helper.ZernikeMoment

ZernikeNamespace - Class in net.imagej.ops.features.zernike

Namespace for Zernike features

ZernikeNamespace() - Constructor for class net.imagej.ops.features.zernike.ZernikeNamespace

zero(T) - Method in class net.imagej.ops.math.MathNamespace

Zero() - Constructor for class net.imagej.ops.math.NullaryNumericTypeMath.Zero

ZERO - Static variable in class net.imagej.plugins.commands.io.NewImage

zeroMinView(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.TransformNamespace

Translate the source such that the upper left corner is at the origin

zf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices

zf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices

zf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices

zf() - Method in interface net.imagej.mesh.Vertex

Z position of vertex, as a float.

zf(long) - Method in interface net.imagej.mesh.Vertices

Z position of a vertex, as a float.

ZhangSuenThinningStrategy - Class in net.imagej.ops.morphology.thin

Implementation of the thinning algorithm proposed by T.

ZhangSuenThinningStrategy() - Constructor for class net.imagej.ops.morphology.thin.ZhangSuenThinningStrategy

ZhangSuenThinningStrategy(boolean) - Constructor for class net.imagej.ops.morphology.thin.ZhangSuenThinningStrategy

Create a new Zhang-Suen thinning strategy.

zoom100Percent(ImageDisplay) - Method in class net.imagej.display.DefaultZoomService

zoom100Percent(ImageDisplay) - Method in interface net.imagej.display.ZoomService

Zooms the given image display to 100% resolution.

Zoom100Percent - Class in net.imagej.plugins.commands.zoom

Zooms the currently displayed image to 100% resolution.

Zoom100Percent() - Constructor for class net.imagej.plugins.commands.zoom.Zoom100Percent

Zoomable - Interface in net.imagej.display

Defines methods needed to adjust the zoom of an ImageCanvas.

ZoomHandler - Class in net.imagej.plugins.tools

Handles the second key mapping for zoom in (not just + but instead here =).

ZoomHandler() - Constructor for class net.imagej.plugins.tools.ZoomHandler

zoomIn() - Method in class net.imagej.display.DefaultImageCanvas

zoomIn(RealCoords) - Method in class net.imagej.display.DefaultImageCanvas

zoomIn(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas

zoomIn(ImageDisplay) - Method in class net.imagej.display.DefaultZoomService

zoomIn() - Method in interface net.imagej.display.Zoomable

Zooms in by the default amount, without changing the viewport's center.

zoomIn(RealCoords) - Method in interface net.imagej.display.Zoomable

Zooms in by the default amount, such that the specified position in data coordinates remains at the same place in the viewport.

zoomIn(IntCoords) - Method in interface net.imagej.display.Zoomable

Zooms in by the default amount, such that the specified position in panel coordinates remains at the same place in the viewport.

zoomIn(ImageDisplay) - Method in interface net.imagej.display.ZoomService

Zooms in on the given image display.

ZoomIn - Class in net.imagej.plugins.commands.zoom

Zooms in on the currently displayed image.

ZoomIn() - Constructor for class net.imagej.plugins.commands.zoom.ZoomIn

zoomOriginalScale(ImageDisplay) - Method in class net.imagej.display.DefaultZoomService

zoomOriginalScale(ImageDisplay) - Method in interface net.imagej.display.ZoomService

Zooms the given image display at the scale it was originally viewed at.

ZoomOriginalScale - Class in net.imagej.plugins.commands.zoom

Zooms the currently displayed image at the scale it was originally viewed at.

ZoomOriginalScale() - Constructor for class net.imagej.plugins.commands.zoom.ZoomOriginalScale

zoomOut() - Method in class net.imagej.display.DefaultImageCanvas

zoomOut(RealCoords) - Method in class net.imagej.display.DefaultImageCanvas

zoomOut(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas

zoomOut(ImageDisplay) - Method in class net.imagej.display.DefaultZoomService

zoomOut() - Method in interface net.imagej.display.Zoomable

Zooms out by the default amount, without changing the viewport's center.

zoomOut(RealCoords) - Method in interface net.imagej.display.Zoomable

Zooms out by the default amount, such that the specified position in data coordinates remains at the same place in the viewport.

zoomOut(IntCoords) - Method in interface net.imagej.display.Zoomable

Zooms out by the default amount, such that the specified position in panel coordinates remains at the same place in the viewport.

zoomOut(ImageDisplay) - Method in interface net.imagej.display.ZoomService

Zooms out on the given image display.

ZoomOut - Class in net.imagej.plugins.commands.zoom

Zooms out on the the currently displayed image.

ZoomOut() - Constructor for class net.imagej.plugins.commands.zoom.ZoomOut

ZoomService - Interface in net.imagej.display

Interface for services that perform zoom operations on ImageDisplays.

zoomSet(ImageDisplay, double, double, double) - Method in class net.imagej.display.DefaultZoomService

zoomSet(ImageDisplay, double, double, double) - Method in interface net.imagej.display.ZoomService

Zooms in on the center of the given image display at the specified magnification level and center coordinates.

ZoomSet - Class in net.imagej.plugins.commands.zoom

Zooms in on the center of the image at the user-specified magnification level.

ZoomSet() - Constructor for class net.imagej.plugins.commands.zoom.ZoomSet

zoomToFit(IntRect) - Method in class net.imagej.display.DefaultImageCanvas

zoomToFit(RealRect) - Method in class net.imagej.display.DefaultImageCanvas

zoomToFit(RealRect) - Method in interface net.imagej.display.Zoomable

Zoom the viewport to fit the given bounding box in data coordinates.

zoomToFit(IntRect) - Method in interface net.imagej.display.Zoomable

Zooms the viewport to fit the given bounding box in panel coordinates.

ZoomTool - Class in net.imagej.plugins.tools

Tool for zooming in and out of a display using the mouse.

ZoomTool() - Constructor for class net.imagej.plugins.tools.ZoomTool

zoomToSelection(ImageDisplay) - Method in class net.imagej.display.DefaultZoomService

zoomToSelection(ImageDisplay) - Method in interface net.imagej.display.ZoomService

Zooms in on the given image display's currently selected region.

ZoomToSelection - Class in net.imagej.plugins.commands.zoom

Zooms in on the currently selected region.

ZoomToSelection() - Constructor for class net.imagej.plugins.commands.zoom.ZoomToSelection

zSize - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser

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