Field Detail

• CLOSED_BOUNDARY_TEXT

  public static final String CLOSED_BOUNDARY_TEXT

  String identifiers for boundary imagej boundary behaviors

  See Also:

  Constant Field Values

• OPEN_BOUNDARY_TEXT

  public static final String OPEN_BOUNDARY_TEXT

  See Also:

  Constant Field Values

• UNSPECIFIED_BOUNDARY_TEXT

  public static final String UNSPECIFIED_BOUNDARY_TEXT

  See Also:

  Constant Field Values

• IJO_VERSION_DESC

  public static final String IJO_VERSION_DESC

  Description value of imagej-omero version tags

  See Also:

  Constant Field Values

Constructor Detail

• ROIConverters

  public ROIConverters()

Method Detail

• boundaryType

  public static <S extends ShapeData> BoundaryType boundaryType(S shape,
                                                                OMEROSession session,
                                                                LogService log)

  Gets the boundary behavior of this shape. If this shape was previously an ImageJ mask it will retrieve the boundary behavior from an annotation; if not, it will default to CLOSED boundary behavior.

  Parameters:

  shape - OMERO shape which will be checked for a boundaryType annotation

  Returns:

  if shape was previously converted to an ImageJ mask, then its previous boundary behavior is returned otherwise CLOSED is returned.

• createAffine

  public static AffineGet createAffine(AffineTransform transformFromSource)

  Converts an OMERO AffineTransform to an ImgLib2 AffineTransform2D.

  Parameters:

  transformFromSource - the OMERO AffineTransform to be converted

  Returns:

  an AffineTransform2D with the same transformation as the OMERO AffineTransform

• createAffine

  public static AffineTransform createAffine(AffineTransform2D transformToSource)

  Converts an ImgLib2 AffineTransform2D to an OMERO AffineTransform.

  Parameters:

  transformToSource - an AffineTransform2D to be converted

  Returns:

  an OMERO AffineTransform with the same transformation as the AffineTransform2D

• createBoundaryTypeString

  public static String createBoundaryTypeString(BoundaryType bt)

• shapeDataEquals

  public static boolean shapeDataEquals(ShapeData shapeOne,
                                        ShapeData shapeTwo)

  Checks if the two given ShapeData objects are equivalent. This means they are the same shape, have the same shape characteristics, have the same text, and are one the same ZTC plane.

  Parameters:

  shapeOne - first shape to compare with

  shapeTwo - second shape to compare with

  Returns:

  true if shapes are equivalent, false otherwise

• synchronizeShapeSettings

  public static void synchronizeShapeSettings(ShapeSettingsData updatedSettings,
                                              ShapeSettingsData oldSettings)

  Updates the oldSettings to be equivalent to updatedSettings.

  Parameters:

  updatedSettings - ShapeSettingsData to transfer

  oldSettings - ShapeSettingsData to update

• synchronizeShapeData

  public static void synchronizeShapeData(ShapeData updatedShape,
                                          ShapeData oldShape)

  Synchronizes oldShape to be equivalent to updatedShape, with the exception of ID. If the ShapeData are not the same type an exception is thrown.

  Parameters:

  updatedShape - the ShapeData whose state will be copied

  oldShape - the ShapeData who will be updated