Method Detail

• getDimensions

  public static long[] getDimensions(Dataset ds,
                                     AxisType oneToModify,
                                     long delta)

  Gets the dimensions of the output data

• createNewImgPlus

  public static ImgPlus<? extends RealType<?>> createNewImgPlus(Dataset ds,
                                                                long[] dimensions,
                                                                AxisType[] axisTypes)

  Creates a new ImgPlus with specified dimensions and axes. Uses the same factory as the input Dataset. Maintains metadata including axis types, dataset name, and axis calibrations. All data values are initialized to 0.

• createNewImgPlus

  public static <T> ImgPlus<T> createNewImgPlus(ImgPlus<T> imgPlus,
                                                long[] dimensions,
                                                AxisType[] axisTypes)

  Creates a new ImgPlus with specified dimensions and axes. Uses the same factory as the input image. Maintains metadata including axis types, dataset name, and axis calibrations. All data values are initialized to 0.

• copyData

  public static void copyData(ImgPlus<? extends RealType<?>> srcImgPlus,
                              ImgPlus<? extends RealType<?>> dstImgPlus,
                              AxisType axis,
                              long srcStartPos,
                              long dstStartPos,
                              long numHyperplanes)

  Copies a region of data from a srcImgPlus to a dstImgPlus. region is defined by a number of planes along an axis that is present in both input ImgPluses

• copyHyperVolume

  public static void copyHyperVolume(ImgPlus<? extends RealType<?>> srcImgPlus,
                                     long[] srcOrigin,
                                     long[] srcSpan,
                                     ImgPlus<? extends RealType<?>> dstImgPlus,
                                     long[] dstOrigin,
                                     long[] dstSpan)

  Copies a hypervolume from a source ImgPlus to a destination ImgPlus. Spans may have different number of dimensions but must be shape compatible with axes in same relative order.

• allocateColorTables

  public static void allocateColorTables(ImgPlus<?> imgPlus)

  Modifies an given ImgPlus by allocating 1 color table reference for each plane in the ImgPlus.

• planeCount

  public static long planeCount(ImgPlus<?> imgPlus)

  Returns the number of planes present in an ImgPlus

• copyColorTables

  public static void copyColorTables(ImgPlus<?> srcImgPlus,
                                     ImgPlus<?> dstImgPlus)

  Copies color table references from a source ImgPlus to a destination ImgPlus. The ImgPluses are assumed to have the same number of planes.