ColocNamespace (ImageJ2 Javadocs 0-SNAPSHOT API)

java.lang.Object
- org.scijava.AbstractContextual
- - net.imagej.ops.AbstractNamespace
  - - net.imagej.ops.coloc.ColocNamespace

All Implemented Interfaces:

Environmental, Namespace, Contextual, Named, SciJavaPlugin
```
public class ColocNamespace
extends AbstractNamespace
```
The coloc namespace contains ops that facilitate colocalization analysis.

Author:

Curtis Rueden, Ellen T Arena

Constructor Summary

Constructors
Constructor and Description

ColocNamespace()

Constructors
Constructor and Description
`ColocNamespace()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`String`	`getName()`
`<T extends RealType<T>,U extends RealType<U>> Double`	`icq(Iterable<T> image1, Iterable<T> image2)`
`<T extends RealType<T>,U extends RealType<U>> Double`	`icq(Iterable<T> image1, Iterable<T> image2, DoubleType mean1)`
`<T extends RealType<T>,U extends RealType<U>> Double`	`icq(Iterable<T> image1, Iterable<T> image2, DoubleType mean1, DoubleType mean2)`
`<T extends RealType<T>,U extends RealType<U>> Double`	`kendallTau(Iterable<T> image1, Iterable<U> image2)`
`<T extends RealType<T>,U extends RealType<U>> Double`	`maxTKendallTau(RandomAccessibleInterval<T> in1, RandomAccessibleInterval<U> in2)`
`<T extends RealType<T>,U extends RealType<U>> Double`	`maxTKendallTau(RandomAccessibleInterval<T> in1, RandomAccessibleInterval<U> in2, long seed)`
`<T extends RealType<T>,U extends RealType<U>> Double`	`pearsons(Iterable<T> image1, Iterable<U> image2)`
`<T extends RealType<T>,U extends RealType<U>> PValueResult`	`pValue(PValueResult out, RandomAccessibleInterval<T> in1, RandomAccessibleInterval<U> in2, BinaryFunctionOp<Iterable<T>,Iterable<U>,Double> op)`
`<T extends RealType<T>,U extends RealType<U>> PValueResult`	`pValue(PValueResult out, RandomAccessibleInterval<T> in1, RandomAccessibleInterval<U> in2, BinaryFunctionOp<Iterable<T>,Iterable<U>,Double> op, int nrRandomizations)`
`<T extends RealType<T>,U extends RealType<U>> PValueResult`	`pValue(PValueResult out, RandomAccessibleInterval<T> in1, RandomAccessibleInterval<U> in2, BinaryFunctionOp<Iterable<T>,Iterable<U>,Double> op, int nrRandomizations, Dimensions psfSize)`
`<T extends RealType<T>,U extends RealType<U>> PValueResult`	`pValue(PValueResult out, RandomAccessibleInterval<T> in1, RandomAccessibleInterval<U> in2, BinaryFunctionOp<Iterable<T>,Iterable<U>,Double> op, int nrRandomizations, Dimensions psfSize, long seed)`

Methods inherited from class net.imagej.ops.AbstractNamespace
ops, setEnvironment

Methods inherited from class org.scijava.AbstractContextual
context, getContext

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imagej.ops.Namespace
setName

Methods inherited from interface org.scijava.Contextual
context, getContext, setContext

Constructor Detail
- ColocNamespace
```
public ColocNamespace()
```

Method Detail

icq

public <T extends RealType<T>,U extends RealType<U>> Double icq(Iterable<T> image1,
                                                                Iterable<T> image2,
                                                                DoubleType mean1,
                                                                DoubleType mean2)

icq

public <T extends RealType<T>,U extends RealType<U>> Double icq(Iterable<T> image1,
                                                                Iterable<T> image2,
                                                                DoubleType mean1)

icq

public <T extends RealType<T>,U extends RealType<U>> Double icq(Iterable<T> image1,
                                                                Iterable<T> image2)

kendallTau

public <T extends RealType<T>,U extends RealType<U>> Double kendallTau(Iterable<T> image1,
                                                                       Iterable<U> image2)

maxTKendallTau

public <T extends RealType<T>,U extends RealType<U>> Double maxTKendallTau(RandomAccessibleInterval<T> in1,
                                                                           RandomAccessibleInterval<U> in2)

maxTKendallTau

public <T extends RealType<T>,U extends RealType<U>> Double maxTKendallTau(RandomAccessibleInterval<T> in1,
                                                                           RandomAccessibleInterval<U> in2,
                                                                           long seed)

pearsons

public <T extends RealType<T>,U extends RealType<U>> Double pearsons(Iterable<T> image1,
                                                                     Iterable<U> image2)

pValue

public <T extends RealType<T>,U extends RealType<U>> PValueResult pValue(PValueResult out,
                                                                         RandomAccessibleInterval<T> in1,
                                                                         RandomAccessibleInterval<U> in2,
                                                                         BinaryFunctionOp<Iterable<T>,Iterable<U>,Double> op)

pValue

public <T extends RealType<T>,U extends RealType<U>> PValueResult pValue(PValueResult out,
                                                                         RandomAccessibleInterval<T> in1,
                                                                         RandomAccessibleInterval<U> in2,
                                                                         BinaryFunctionOp<Iterable<T>,Iterable<U>,Double> op,
                                                                         int nrRandomizations)

pValue

public <T extends RealType<T>,U extends RealType<U>> PValueResult pValue(PValueResult out,
                                                                         RandomAccessibleInterval<T> in1,
                                                                         RandomAccessibleInterval<U> in2,
                                                                         BinaryFunctionOp<Iterable<T>,Iterable<U>,Double> op,
                                                                         int nrRandomizations,
                                                                         Dimensions psfSize)

pValue

public <T extends RealType<T>,U extends RealType<U>> PValueResult pValue(PValueResult out,
                                                                         RandomAccessibleInterval<T> in1,
                                                                         RandomAccessibleInterval<U> in2,
                                                                         BinaryFunctionOp<Iterable<T>,Iterable<U>,Double> op,
                                                                         int nrRandomizations,
                                                                         Dimensions psfSize,
                                                                         long seed)

getName
```
public String getName()
```

Class ColocNamespace

Constructor Summary

Method Summary

Methods inherited from class net.imagej.ops.AbstractNamespace

Methods inherited from class org.scijava.AbstractContextual

Methods inherited from class java.lang.Object

Methods inherited from interface net.imagej.ops.Namespace

Methods inherited from interface org.scijava.Contextual

Constructor Detail

ColocNamespace

Method Detail

icq

icq

icq

kendallTau

maxTKendallTau

maxTKendallTau

pearsons

pValue

pValue

pValue

pValue

getName