MorphologyNamespace (ImageJ2 Javadocs 0-SNAPSHOT API)

java.lang.Object
- org.scijava.AbstractContextual
- - net.imagej.ops.AbstractNamespace
  - - net.imagej.ops.morphology.MorphologyNamespace

All Implemented Interfaces:

Environmental, Namespace, Contextual, Named, SciJavaPlugin
```
public class MorphologyNamespace
extends AbstractNamespace
```
The morphology namespace contains morphology operations.

Author:

Leon Yang

Constructor Summary

Constructors
Constructor and Description

MorphologyNamespace()

Constructors
Constructor and Description
`MorphologyNamespace()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`<T extends RealType<T>> IterableInterval<T>`	`blackTopHat(IterableInterval<T> out, RandomAccessibleInterval<T> in1, List<Shape> in2)`
`<T extends RealType<T>> IterableInterval<T>`	`blackTopHat(RandomAccessibleInterval<T> in1, List<Shape> in2)`
`<T extends RealType<T>> IterableInterval<T>`	`close(IterableInterval<T> out, RandomAccessibleInterval<T> in1, List<Shape> in2)`
`<T extends RealType<T>> IterableInterval<T>`	`close(RandomAccessibleInterval<T> in1, List<Shape> in2)`
`<T extends RealType<T>> IterableInterval<T>`	`dilate(IterableInterval<T> out, RandomAccessibleInterval<T> in1, List<Shape> in2)`
`<T extends RealType<T>> IterableInterval<T>`	`dilate(IterableInterval<T> out, RandomAccessibleInterval<T> in1, List<Shape> in2, boolean isFull)`
`<T extends RealType<T>> IterableInterval<T>`	`dilate(IterableInterval<T> out, RandomAccessibleInterval<T> in1, Shape in2)`
`<T extends RealType<T>> IterableInterval<T>`	`dilate(IterableInterval<T> out, RandomAccessibleInterval<T> in1, Shape in2, boolean isFull)`
`<T extends RealType<T>> IterableInterval<T>`	`dilate(IterableInterval<T> out, RandomAccessibleInterval<T> in1, Shape in2, boolean isFull, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> f)`
`<T extends RealType<T>> IterableInterval<T>`	`dilate(RandomAccessibleInterval<T> in1, List<Shape> in2)`
`<T extends RealType<T>> IterableInterval<T>`	`dilate(RandomAccessibleInterval<T> in1, Shape in2)`
`<T extends RealType<T>> IterableInterval<T>`	`erode(IterableInterval<T> out, RandomAccessibleInterval<T> in1, List<Shape> in2)`
`<T extends RealType<T>> IterableInterval<T>`	`erode(IterableInterval<T> out, RandomAccessibleInterval<T> in1, List<Shape> in2, boolean isFull)`
`<T extends RealType<T>> IterableInterval<T>`	`erode(IterableInterval<T> out, RandomAccessibleInterval<T> in1, Shape in2)`
`<T extends RealType<T>> IterableInterval<T>`	`erode(IterableInterval<T> out, RandomAccessibleInterval<T> in1, Shape in2, boolean isFull)`
`<T extends RealType<T>> IterableInterval<T>`	`erode(IterableInterval<T> out, RandomAccessibleInterval<T> in1, Shape in2, boolean isFull, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> f)`
`<T extends RealType<T>> IterableInterval<T>`	`erode(RandomAccessibleInterval<T> in1, List<Shape> in2)`
`<T extends RealType<T>> IterableInterval<T>`	`erode(RandomAccessibleInterval<T> in1, Shape in2)`
`<T extends BooleanType<T>> RandomAccessibleInterval<T>`	`extractHoles(RandomAccessibleInterval<T> in)`
`<T extends BooleanType<T>> RandomAccessibleInterval<T>`	`extractHoles(RandomAccessibleInterval<T> out, RandomAccessibleInterval<T> in)`
`<T extends BooleanType<T>> RandomAccessibleInterval<T>`	`extractHoles(RandomAccessibleInterval<T> out, RandomAccessibleInterval<T> in, Shape structElement)`
`<T extends BooleanType<T>> RandomAccessibleInterval<T>`	`extractHoles(RandomAccessibleInterval<T> in, Shape structElement)`
`<T extends BooleanType<T>> RandomAccessibleInterval<T>`	`fillHoles(RandomAccessibleInterval<T> in)`
`<T extends BooleanType<T>> RandomAccessibleInterval<T>`	`fillHoles(RandomAccessibleInterval<T> out, RandomAccessibleInterval<T> in)`
`<T extends BooleanType<T>> RandomAccessibleInterval<T>`	`fillHoles(RandomAccessibleInterval<T> out, RandomAccessibleInterval<T> in, Shape structElement)`
`<T extends Type<T> & Comparable<T>> RandomAccessibleInterval<T>`	`floodFill(RandomAccessibleInterval<T> in1, Localizable in2, Shape structElement)`
`<T extends Type<T> & Comparable<T>> RandomAccessibleInterval<T>`	`floodFill(RandomAccessibleInterval<T> out, RandomAccessibleInterval<T> in, Localizable startPos, Shape structElement)`
`String`	`getName()`
`<T extends RealType<T>> IterableInterval<T>`	`open(IterableInterval<T> out, RandomAccessibleInterval<T> in1, List<Shape> in2)`
`<T extends RealType<T>> IterableInterval<T>`	`open(RandomAccessibleInterval<T> in1, List<Shape> in2)`
`<B extends BooleanType<B>> RandomAccessibleInterval<BitType>`	`outline(RandomAccessibleInterval<B> in, Boolean excludeEdges)`
`<B extends BooleanType<B>> RandomAccessibleInterval<BitType>`	`outline(RandomAccessibleInterval<BitType> out, RandomAccessibleInterval<B> in, Boolean excludeEdges)`
`RandomAccessibleInterval`	`thinGuoHall(RandomAccessibleInterval in)`
`RandomAccessibleInterval`	`thinGuoHall(RandomAccessibleInterval out, RandomAccessibleInterval in)`
`RandomAccessibleInterval`	`thinHilditch(RandomAccessibleInterval in)`
`RandomAccessibleInterval`	`thinHilditch(RandomAccessibleInterval out, RandomAccessibleInterval in)`
`RandomAccessibleInterval`	`thinMorphological(RandomAccessibleInterval in)`
`RandomAccessibleInterval`	`thinMorphological(RandomAccessibleInterval out, RandomAccessibleInterval in)`
`RandomAccessibleInterval`	`thinZhangSuen(RandomAccessibleInterval in)`
`RandomAccessibleInterval`	`thinZhangSuen(RandomAccessibleInterval out, RandomAccessibleInterval in)`
`<T extends RealType<T>> IterableInterval<T>`	`topHat(IterableInterval<T> out, RandomAccessibleInterval<T> in1, List<Shape> in2)`
`<T extends RealType<T>> IterableInterval<T>`	`topHat(RandomAccessibleInterval<T> in1, List<Shape> in2)`

Methods inherited from class net.imagej.ops.AbstractNamespace
ops, setEnvironment

Methods inherited from class org.scijava.AbstractContextual
context, getContext

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imagej.ops.Namespace
setName

Methods inherited from interface org.scijava.Contextual
context, getContext, setContext

Constructor Detail
- MorphologyNamespace
```
public MorphologyNamespace()
```

Method Detail

thinGuoHall

public RandomAccessibleInterval thinGuoHall(RandomAccessibleInterval in)

thinGuoHall

public RandomAccessibleInterval thinGuoHall(RandomAccessibleInterval out,
                                            RandomAccessibleInterval in)

thinHilditch

public RandomAccessibleInterval thinHilditch(RandomAccessibleInterval in)

thinHilditch

public RandomAccessibleInterval thinHilditch(RandomAccessibleInterval out,
                                             RandomAccessibleInterval in)

thinMorphological

public RandomAccessibleInterval thinMorphological(RandomAccessibleInterval in)

thinMorphological

public RandomAccessibleInterval thinMorphological(RandomAccessibleInterval out,
                                                  RandomAccessibleInterval in)

thinZhangSuen

public RandomAccessibleInterval thinZhangSuen(RandomAccessibleInterval in)

thinZhangSuen

public RandomAccessibleInterval thinZhangSuen(RandomAccessibleInterval out,
                                              RandomAccessibleInterval in)

blackTopHat

public <T extends RealType<T>> IterableInterval<T> blackTopHat(RandomAccessibleInterval<T> in1,
                                                               List<Shape> in2)

blackTopHat

public <T extends RealType<T>> IterableInterval<T> blackTopHat(IterableInterval<T> out,
                                                               RandomAccessibleInterval<T> in1,
                                                               List<Shape> in2)

close

public <T extends RealType<T>> IterableInterval<T> close(RandomAccessibleInterval<T> in1,
                                                         List<Shape> in2)

close

public <T extends RealType<T>> IterableInterval<T> close(IterableInterval<T> out,
                                                         RandomAccessibleInterval<T> in1,
                                                         List<Shape> in2)

dilate

public <T extends RealType<T>> IterableInterval<T> dilate(RandomAccessibleInterval<T> in1,
                                                          Shape in2)

dilate

public <T extends RealType<T>> IterableInterval<T> dilate(IterableInterval<T> out,
                                                          RandomAccessibleInterval<T> in1,
                                                          Shape in2)

dilate

public <T extends RealType<T>> IterableInterval<T> dilate(IterableInterval<T> out,
                                                          RandomAccessibleInterval<T> in1,
                                                          Shape in2,
                                                          boolean isFull)

dilate

public <T extends RealType<T>> IterableInterval<T> dilate(IterableInterval<T> out,
                                                          RandomAccessibleInterval<T> in1,
                                                          Shape in2,
                                                          boolean isFull,
                                                          OutOfBoundsFactory<T,RandomAccessibleInterval<T>> f)

dilate

public <T extends RealType<T>> IterableInterval<T> dilate(RandomAccessibleInterval<T> in1,
                                                          List<Shape> in2)

dilate

public <T extends RealType<T>> IterableInterval<T> dilate(IterableInterval<T> out,
                                                          RandomAccessibleInterval<T> in1,
                                                          List<Shape> in2)

dilate

public <T extends RealType<T>> IterableInterval<T> dilate(IterableInterval<T> out,
                                                          RandomAccessibleInterval<T> in1,
                                                          List<Shape> in2,
                                                          boolean isFull)

erode

public <T extends RealType<T>> IterableInterval<T> erode(RandomAccessibleInterval<T> in1,
                                                         Shape in2)

erode

public <T extends RealType<T>> IterableInterval<T> erode(IterableInterval<T> out,
                                                         RandomAccessibleInterval<T> in1,
                                                         Shape in2)

erode

public <T extends RealType<T>> IterableInterval<T> erode(IterableInterval<T> out,
                                                         RandomAccessibleInterval<T> in1,
                                                         Shape in2,
                                                         boolean isFull)

erode

public <T extends RealType<T>> IterableInterval<T> erode(IterableInterval<T> out,
                                                         RandomAccessibleInterval<T> in1,
                                                         Shape in2,
                                                         boolean isFull,
                                                         OutOfBoundsFactory<T,RandomAccessibleInterval<T>> f)

erode

public <T extends RealType<T>> IterableInterval<T> erode(RandomAccessibleInterval<T> in1,
                                                         List<Shape> in2)

erode

public <T extends RealType<T>> IterableInterval<T> erode(IterableInterval<T> out,
                                                         RandomAccessibleInterval<T> in1,
                                                         List<Shape> in2)

erode

public <T extends RealType<T>> IterableInterval<T> erode(IterableInterval<T> out,
                                                         RandomAccessibleInterval<T> in1,
                                                         List<Shape> in2,
                                                         boolean isFull)

open

public <T extends RealType<T>> IterableInterval<T> open(RandomAccessibleInterval<T> in1,
                                                        List<Shape> in2)

open

public <T extends RealType<T>> IterableInterval<T> open(IterableInterval<T> out,
                                                        RandomAccessibleInterval<T> in1,
                                                        List<Shape> in2)

outline

public <B extends BooleanType<B>> RandomAccessibleInterval<BitType> outline(RandomAccessibleInterval<BitType> out,
                                                                            RandomAccessibleInterval<B> in,
                                                                            Boolean excludeEdges)

outline

public <B extends BooleanType<B>> RandomAccessibleInterval<BitType> outline(RandomAccessibleInterval<B> in,
                                                                            Boolean excludeEdges)

topHat

public <T extends RealType<T>> IterableInterval<T> topHat(RandomAccessibleInterval<T> in1,
                                                          List<Shape> in2)

topHat

public <T extends RealType<T>> IterableInterval<T> topHat(IterableInterval<T> out,
                                                          RandomAccessibleInterval<T> in1,
                                                          List<Shape> in2)

extractHoles

public <T extends BooleanType<T>> RandomAccessibleInterval<T> extractHoles(RandomAccessibleInterval<T> out,
                                                                           RandomAccessibleInterval<T> in)

extractHoles

public <T extends BooleanType<T>> RandomAccessibleInterval<T> extractHoles(RandomAccessibleInterval<T> out,
                                                                           RandomAccessibleInterval<T> in,
                                                                           Shape structElement)

extractHoles

public <T extends BooleanType<T>> RandomAccessibleInterval<T> extractHoles(RandomAccessibleInterval<T> in)

extractHoles

public <T extends BooleanType<T>> RandomAccessibleInterval<T> extractHoles(RandomAccessibleInterval<T> in,
                                                                           Shape structElement)

fillHoles

public <T extends BooleanType<T>> RandomAccessibleInterval<T> fillHoles(RandomAccessibleInterval<T> in)

fillHoles

public <T extends BooleanType<T>> RandomAccessibleInterval<T> fillHoles(RandomAccessibleInterval<T> out,
                                                                        RandomAccessibleInterval<T> in)

fillHoles

public <T extends BooleanType<T>> RandomAccessibleInterval<T> fillHoles(RandomAccessibleInterval<T> out,
                                                                        RandomAccessibleInterval<T> in,
                                                                        Shape structElement)

floodFill

public <T extends Type<T> & Comparable<T>> RandomAccessibleInterval<T> floodFill(RandomAccessibleInterval<T> out,
                                                                                 RandomAccessibleInterval<T> in,
                                                                                 Localizable startPos,
                                                                                 Shape structElement)

floodFill

public <T extends Type<T> & Comparable<T>> RandomAccessibleInterval<T> floodFill(RandomAccessibleInterval<T> in1,
                                                                                 Localizable in2,
                                                                                 Shape structElement)

getName
```
public String getName()
```

Class MorphologyNamespace

Constructor Summary

Method Summary

Methods inherited from class net.imagej.ops.AbstractNamespace

Methods inherited from class org.scijava.AbstractContextual

Methods inherited from class java.lang.Object

Methods inherited from interface net.imagej.ops.Namespace

Methods inherited from interface org.scijava.Contextual

Constructor Detail

MorphologyNamespace

Method Detail

thinGuoHall

thinGuoHall

thinHilditch

thinHilditch

thinMorphological

thinMorphological

thinZhangSuen

thinZhangSuen

blackTopHat

blackTopHat

close

close

dilate

dilate

dilate

dilate

dilate

dilate

dilate

erode

erode

erode

erode

erode

erode

erode

open

open

outline

outline

topHat

topHat

extractHoles

extractHoles

extractHoles

extractHoles

fillHoles

fillHoles

fillHoles

floodFill

floodFill

getName