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A

a - Variable in class net.imglib2.algorithm.math.abstractions.ABinaryFunction
 
a - Variable in class net.imglib2.algorithm.math.abstractions.ATrinaryFunction
 
a - Variable in class net.imglib2.algorithm.math.abstractions.AUnaryFunction
 
a - Variable in class net.imglib2.algorithm.math.execution.Comparison
 
a - Variable in class net.imglib2.algorithm.math.execution.LogicalNot
 
a - Variable in class net.imglib2.realtransform.AbstractAffineTransform
 
a - Variable in class net.imglib2.realtransform.AffineTransform2D
 
a - Variable in class net.imglib2.realtransform.AffineTransform3D
 
a - Variable in class net.imglib2.realtransform.PolynomialTransform2D
holds two coefficients for each polynomial coefficient, including 1 initialized at 0 order, i.e.
a - Variable in class net.imglib2.type.numeric.ARGBDoubleType
 
a - Variable in class net.imglib2.util.ValuePair
 
a - Variable in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
ABinaryFunction - Class in net.imglib2.algorithm.math.abstractions
 
ABinaryFunction(Object, Object) - Constructor for class net.imglib2.algorithm.math.abstractions.ABinaryFunction
 
ABinaryFunction(Object...) - Constructor for class net.imglib2.algorithm.math.abstractions.ABinaryFunction
 
ABooleanFunction<O extends RealType<O>> - Class in net.imglib2.algorithm.math.abstractions
 
ABooleanFunction(O) - Constructor for class net.imglib2.algorithm.math.abstractions.ABooleanFunction
 
Abstract3x3TableOperation - Class in net.imglib2.algorithm.morphology.table2d
Performs a binary operation on a 3x3 2-D neighborhood using a table of truth values to drive the operation.
Abstract3x3TableOperation() - Constructor for class net.imglib2.algorithm.morphology.table2d.Abstract3x3TableOperation
 
AbstractAccessProxy<T> - Class in net.imglib2.img.io.proxyaccess
 
AbstractAccessProxy(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.img.io.proxyaccess.AbstractAccessProxy
 
AbstractAdaptingInterval(int) - Constructor for class net.imglib2.roi.Bounds.AbstractAdaptingInterval
 
AbstractAdaptingRealInterval(int) - Constructor for class net.imglib2.roi.Bounds.AbstractAdaptingRealInterval
 
AbstractAffineTransform - Class in net.imglib2.realtransform
An abstract implementation of an affine transformation that returns default values referring to the identity transformation for all fields.
AbstractAffineTransform(Matrix, double[]) - Constructor for class net.imglib2.realtransform.AbstractAffineTransform
 
AbstractAffineTransform(Matrix) - Constructor for class net.imglib2.realtransform.AbstractAffineTransform
 
AbstractAffineTransform(int) - Constructor for class net.imglib2.realtransform.AbstractAffineTransform
 
AbstractARGBDoubleType<T extends AbstractARGBDoubleType<T>> - Class in net.imglib2.type.numeric
 
AbstractARGBDoubleType() - Constructor for class net.imglib2.type.numeric.AbstractARGBDoubleType
 
AbstractArrayColorTable<T> - Class in net.imglib2.display
Abstract superclass for array-based color lookup tables.
AbstractArrayColorTable(T...) - Constructor for class net.imglib2.display.AbstractArrayColorTable
Initializes a color table with the given table values.
AbstractArrayCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
AbstractArrayCursor(AbstractArrayCursor<T>) - Constructor for class net.imglib2.img.array.AbstractArrayCursor
TODO Javadoc
AbstractArrayCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.AbstractArrayCursor
TODO Javadoc
AbstractArrayLocalizingCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
Localizing Cursor on an ArrayImg.
AbstractArrayLocalizingCursor(AbstractArrayLocalizingCursor<T>) - Constructor for class net.imglib2.img.array.AbstractArrayLocalizingCursor
TODO Javadoc
AbstractArrayLocalizingCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.AbstractArrayLocalizingCursor
TODO Javadoc
AbstractBit64Type<T extends AbstractBit64Type<T>> - Class in net.imglib2.type
A Type with arbitrary bit depth up to maximum 64 bits.
AbstractBit64Type(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.AbstractBit64Type
 
AbstractBit64Type(long, int) - Constructor for class net.imglib2.type.AbstractBit64Type
 
AbstractBit64Type(LongAccess, int) - Constructor for class net.imglib2.type.AbstractBit64Type
 
AbstractBit64Type(int) - Constructor for class net.imglib2.type.AbstractBit64Type
 
AbstractBitType<T extends AbstractBitType<T>> - Class in net.imglib2.type
Provides basic infrastructure to implement Types based on single bits stored in a LongAccess
AbstractBitType(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.AbstractBitType
 
AbstractBooleanArray<A extends AbstractBooleanArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractBooleanArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractBooleanArray
 
AbstractBooleanArray(boolean[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractBooleanArray
 
AbstractBsplineKernel - Class in net.imglib2.algorithm.bspline
 
AbstractBsplineKernel() - Constructor for class net.imglib2.algorithm.bspline.AbstractBsplineKernel
 
AbstractByteArray<A extends AbstractByteArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractByteArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
AbstractByteArray(byte[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
AbstractByteArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractByteArrayIo
 
AbstractCache<K,V> - Interface in net.imglib2.cache
 
AbstractCacheKeyAdapter<K,L,V,C extends AbstractCache<L,V>> - Class in net.imglib2.cache.util
Wraps a Cache<L,V> as a Cache<K,V>, using a KeyBimap<K,L> to translate keys.
AbstractCacheKeyAdapter(C, KeyBimap<K, L>) - Constructor for class net.imglib2.cache.util.AbstractCacheKeyAdapter
 
AbstractCellImg<T extends NativeType<T>,A,C extends Cell<A>,I extends RandomAccessible<C> & IterableInterval<C>> - Class in net.imglib2.img.cell
Abstract superclass for Img types that divide their underlying data into cells.
AbstractCellImg(CellGrid, I, Fraction) - Constructor for class net.imglib2.img.cell.AbstractCellImg
 
AbstractCellImg.CellImgSampler<C> - Interface in net.imglib2.img.cell
This interface is implemented by all samplers on the AbstractCellImg.
AbstractCharArray<A extends AbstractCharArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractCharArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
AbstractCharArray(char[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
AbstractCharArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractCharArrayIo
 
AbstractComplexType<T extends AbstractComplexType<T>> - Class in net.imglib2.type.numeric.complex
TODO
AbstractComplexType() - Constructor for class net.imglib2.type.numeric.complex.AbstractComplexType
 
AbstractComposite<T> - Class in net.imglib2.view.composite
Abstract implementation of Composite.
AbstractComposite(RandomAccess<T>) - Constructor for class net.imglib2.view.composite.AbstractComposite
 
AbstractConvertedCursor<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedCursor(Cursor<A>) - Constructor for class net.imglib2.converter.AbstractConvertedCursor
 
AbstractConvertedIterableInterval<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedIterableInterval(IterableInterval<A>) - Constructor for class net.imglib2.converter.AbstractConvertedIterableInterval
 
AbstractConvertedIterableRandomAccessibleInterval<A,B,S extends RandomAccessible<A> & IterableInterval<A>> - Class in net.imglib2.converter
TODO
AbstractConvertedIterableRandomAccessibleInterval(S) - Constructor for class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
AbstractConvertedIterableRealInterval<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedIterableRealInterval(IterableRealInterval<A>) - Constructor for class net.imglib2.converter.AbstractConvertedIterableRealInterval
 
AbstractConvertedRandomAccess<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRandomAccess(RandomAccess<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccess
 
AbstractConvertedRandomAccessible<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRandomAccessible(RandomAccessible<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccessible
 
AbstractConvertedRandomAccessibleInterval<A,B> - Class in net.imglib2.converter
 
AbstractConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccessibleInterval
 
AbstractConvertedRealCursor<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRealCursor(RealCursor<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRealCursor
 
AbstractConvertedRealRandomAccess<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRealRandomAccess(RealRandomAccess<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
AbstractConvertedRealRandomAccessible<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRealRandomAccessible(RealRandomAccessible<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRealRandomAccessible
 
AbstractCursor<T> - Class in net.imglib2
Abstract implementation of Cursor.
AbstractCursor(int) - Constructor for class net.imglib2.AbstractCursor
 
AbstractCursorInt<T> - Class in net.imglib2
Abstract implementation of Cursor.
AbstractCursorInt(int) - Constructor for class net.imglib2.AbstractCursorInt
 
AbstractDifferentiableRealTransform - Class in net.imglib2.realtransform.inverse
 
AbstractDifferentiableRealTransform() - Constructor for class net.imglib2.realtransform.inverse.AbstractDifferentiableRealTransform
 
AbstractDoubleArray<A extends AbstractDoubleArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractDoubleArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
AbstractDoubleArray(double[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
AbstractDoubleArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractDoubleArrayIo
 
AbstractEuclideanSpace - Class in net.imglib2
Superclass of abstract EuclideanSpace implementations (accessors, containers, etc).
AbstractEuclideanSpace(int) - Constructor for class net.imglib2.AbstractEuclideanSpace
 
AbstractFloatArray<A extends AbstractFloatArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractFloatArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
AbstractFloatArray(float[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
AbstractFloatArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractFloatArrayIo
 
AbstractFunctionEuclideanSpace<P,T> - Class in net.imglib2.position
Abstract base class for functions that generate values through a BiConsumer.
AbstractFunctionEuclideanSpace(int, Supplier<BiConsumer<P, ? super T>>, Supplier<T>) - Constructor for class net.imglib2.position.AbstractFunctionEuclideanSpace
Constructor for stateful functions that cannot be used concurrently.
AbstractFunctionEuclideanSpace(int, BiConsumer<P, ? super T>, Supplier<T>) - Constructor for class net.imglib2.position.AbstractFunctionEuclideanSpace
Simplified constructor if the same function is stateless and can be used concurrently.
AbstractGauss<T extends NumericType<T>> - Class in net.imglib2.algorithm.gauss
 
AbstractGauss(double[], RandomAccessible<T>, Interval, RandomAccessible<T>, Localizable, ImgFactory<T>, T) - Constructor for class net.imglib2.algorithm.gauss.AbstractGauss
 
AbstractImg<T> - Class in net.imglib2.img
TODO
AbstractImg(long[]) - Constructor for class net.imglib2.img.AbstractImg
 
AbstractIntArray<A extends AbstractIntArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractIntArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
AbstractIntArray(int[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
AbstractIntArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractIntArrayIo
 
AbstractIntegerBitType<T extends AbstractIntegerBitType<T>> - Class in net.imglib2.type.numeric.integer
The performance of this type is traded off for the gain in memory storage.
AbstractIntegerBitType(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
AbstractIntegerType<T extends AbstractIntegerType<T>> - Class in net.imglib2.type.numeric.integer
TODO
AbstractIntegerType() - Constructor for class net.imglib2.type.numeric.integer.AbstractIntegerType
 
AbstractInterval - Class in net.imglib2
Implementation of the Interval interface.
AbstractInterval(int) - Constructor for class net.imglib2.AbstractInterval
Creates an n-dimensional AbstractInterval with min and max = 0n.
AbstractInterval(Interval) - Constructor for class net.imglib2.AbstractInterval
Creates a AbstractInterval from another Interval
AbstractInterval(Dimensions) - Constructor for class net.imglib2.AbstractInterval
Creates an Interval with the boundaries [0, dimensions-1]
AbstractInterval(long[], long[], boolean) - Constructor for class net.imglib2.AbstractInterval
Creates an Interval with the boundaries [min, max] (both including)
AbstractInterval(long[], long[]) - Constructor for class net.imglib2.AbstractInterval
Creates an Interval with the boundaries [min, max] (both including)
AbstractInterval(Localizable, Localizable) - Constructor for class net.imglib2.AbstractInterval
Creates an Interval with the boundaries [min, max] (both including)
AbstractInterval(long[]) - Constructor for class net.imglib2.AbstractInterval
Creates an Interval with the boundaries [0, dimensions-1]
AbstractIterableRegionOfInterest - Class in net.imglib2.roi
Deprecated.
AbstractIterableRegionOfInterest(int) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
 
AbstractIterableRegionOfInterest.AROIClippedIterableInterval<T extends Type<T>> - Class in net.imglib2.roi
Deprecated.
 
AbstractIterableRegionOfInterest.AROIIterableInterval<T extends Type<T>> - Class in net.imglib2.roi
Deprecated.
 
AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor - Class in net.imglib2.roi
Deprecated.
 
AbstractIterableRegionOfInterest.AROIIterationOrder - Class in net.imglib2.roi
Deprecated.
 
AbstractLabeling<T extends Comparable<T>> - Class in net.imglib2.labeling
Deprecated.
AbstractLabeling(long[], LabelingROIStrategyFactory<T>) - Constructor for class net.imglib2.labeling.AbstractLabeling
Deprecated.
 
AbstractLinearRange - Class in net.imglib2.display
 
AbstractLinearRange() - Constructor for class net.imglib2.display.AbstractLinearRange
 
AbstractLinearRange(double, double) - Constructor for class net.imglib2.display.AbstractLinearRange
 
AbstractLineIterator - Class in net.imglib2.algorithm.gauss
Deprecated.
AbstractLineIterator(int, long, A) - Constructor for class net.imglib2.algorithm.gauss.AbstractLineIterator
Deprecated.
Make a new LineIterator which iterates a 1d line of a certain length
AbstractLineIterator(int, long, Localizable, Positionable) - Constructor for class net.imglib2.algorithm.gauss.AbstractLineIterator
Deprecated.
Make a new LineIterator which iterates a 1d line of a certain length
AbstractListImg<T> - Class in net.imglib2.img.list
Abstract base class for Img that store pixels in a single linear array (an ArrayList or similar).In principle, the number of entities stored is limited to Integer.MAX_VALUE.
AbstractListImg(long[]) - Constructor for class net.imglib2.img.list.AbstractListImg
 
AbstractLocalizable - Class in net.imglib2
An abstract class that implements the Localizable interface using a long[] array to maintain position.
AbstractLocalizable(int) - Constructor for class net.imglib2.AbstractLocalizable
 
AbstractLocalizable(long[]) - Constructor for class net.imglib2.AbstractLocalizable
Protected constructor that re-uses the passed position array.
AbstractLocalizableInt - Class in net.imglib2
An abstract class that implements the Localizable interface using an int[] array to maintain position.
AbstractLocalizableInt(int) - Constructor for class net.imglib2.AbstractLocalizableInt
 
AbstractLocalizableInt(int[]) - Constructor for class net.imglib2.AbstractLocalizableInt
Protected constructor that re-uses the passed position array.
AbstractLocalizingCursor<T> - Class in net.imglib2
Abstract base class for localizing Cursors.
AbstractLocalizingCursor(int) - Constructor for class net.imglib2.AbstractLocalizingCursor
 
AbstractLocalizingCursorInt<T> - Class in net.imglib2
Abstract base class for localizing Cursors.
AbstractLocalizingCursorInt(int) - Constructor for class net.imglib2.AbstractLocalizingCursorInt
 
AbstractLongArray<A extends AbstractLongArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractLongArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
AbstractLongArray(long[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
AbstractLongArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractLongArrayIo
 
AbstractLongListImg<T> - Class in net.imglib2.img.list
Abstract base class for Img that store pixels in a single linear list addressed by a long.
AbstractLongListImg(long[]) - Constructor for class net.imglib2.img.list.AbstractLongListImg
 
AbstractLongListImg.LongListCursor - Class in net.imglib2.img.list
 
AbstractLongListImg.LongListLocalizingCursor - Class in net.imglib2.img.list
 
AbstractLongListImg.LongListRandomAccess - Class in net.imglib2.img.list
 
AbstractMixedTransform - Class in net.imglib2.transform.integer
TODO
AbstractMixedTransform(int) - Constructor for class net.imglib2.transform.integer.AbstractMixedTransform
 
AbstractMultiThreadedConvolution<T> - Class in net.imglib2.algorithm.convolution
Deprecated.
AbstractMultiThreadedConvolution() - Constructor for class net.imglib2.algorithm.convolution.AbstractMultiThreadedConvolution
Deprecated.
 
AbstractNativeImg<T extends NativeType<T>,A> - Class in net.imglib2.img
TODO
AbstractNativeImg(long[], Fraction) - Constructor for class net.imglib2.img.AbstractNativeImg
 
AbstractNativeLabeling<T extends Comparable<T>> - Class in net.imglib2.labeling
Deprecated.
AbstractNativeLabeling(long[], LabelingROIStrategyFactory<T>, LabelingMapping<T>) - Constructor for class net.imglib2.labeling.AbstractNativeLabeling
Deprecated.
 
AbstractNativeLongAccessImg<T extends NativeLongAccessType<T>,A> - Class in net.imglib2.img
TODO
AbstractNativeLongAccessImg(long[], Fraction) - Constructor for class net.imglib2.img.AbstractNativeLongAccessImg
 
AbstractNativeLongAccessType<T extends AbstractNativeLongAccessType<T>> - Class in net.imglib2.type
 
AbstractNativeLongAccessType() - Constructor for class net.imglib2.type.AbstractNativeLongAccessType
 
AbstractNativeType<T extends AbstractNativeType<T>> - Class in net.imglib2.type
TODO
AbstractNativeType() - Constructor for class net.imglib2.type.AbstractNativeType
 
AbstractNeighborhood<T> - Class in net.imglib2.algorithm.region.localneighborhood
A Positionable IterableInterval that serves as a local neighborhood, e.g.
AbstractNeighborhood(int, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
AbstractNeighborhoodCursor<T> - Class in net.imglib2.algorithm.region.localneighborhood
 
AbstractNeighborhoodCursor(AbstractNeighborhood<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
AbstractNumericComposite<T extends NumericType<T>,C extends AbstractNumericComposite<T,C>> - Class in net.imglib2.view.composite
Abstract base class for a vector of NumericType scalars.
AbstractNumericComposite(RandomAccess<T>, int) - Constructor for class net.imglib2.view.composite.AbstractNumericComposite
 
AbstractOutOfBoundsMirror<T> - Class in net.imglib2.outofbounds
Abstract implementation of shared functions for mirroring out of bounds.
AbstractOutOfBoundsMirror(AbstractOutOfBoundsMirror<T>) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
AbstractOutOfBoundsMirror(F) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
AbstractOutOfBoundsValue<T> - Class in net.imglib2.outofbounds
 
AbstractOutOfBoundsValue(AbstractOutOfBoundsValue<T>) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
AbstractOutOfBoundsValue(F) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
AbstractOwningUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe.owning
 
AbstractOwningUnsafe(UnsafeUtil.OwningUnsafe) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.owning.AbstractOwningUnsafe
 
AbstractPermutationTransform - Class in net.imglib2.transform.integer.permutation
Bijective integer transform mapping between integer coordinates in [0,n-1].
AbstractPermutationTransform(int[]) - Constructor for class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
AbstractPositionableTransform<LocalizablePositionable extends Localizable & Positionable> - Class in net.imglib2.position.transform
A RealPositionable that drives a Positionable to somehow derived discrete coordinates.
AbstractPositionableTransform(LocalizablePositionable) - Constructor for class net.imglib2.position.transform.AbstractPositionableTransform
 
AbstractProjector2D - Class in net.imglib2.display.projector
Base class for 2D projectors.
AbstractProjector2D(int) - Constructor for class net.imglib2.display.projector.AbstractProjector2D
initializes a reference point with the specified number of dimensions.
AbstractRealInterval - Class in net.imglib2
Implementation of the RealInterval interface.
AbstractRealInterval(int) - Constructor for class net.imglib2.AbstractRealInterval
Creates an n-dimensional AbstractInterval with min and max = 0n.
AbstractRealInterval(RealInterval) - Constructor for class net.imglib2.AbstractRealInterval
Creates a new AbstractRealInterval using an existing RealInterval
AbstractRealInterval(double[], double[], boolean) - Constructor for class net.imglib2.AbstractRealInterval
Creates a new AbstractRealInterval from min and max coordinates
AbstractRealInterval(double[], double[]) - Constructor for class net.imglib2.AbstractRealInterval
Creates a new AbstractRealInterval from min and max coordinates
AbstractRealInterval(RealLocalizable, RealLocalizable) - Constructor for class net.imglib2.AbstractRealInterval
Creates a new AbstractRealInterval from min and max coordinates
AbstractRealLocalizable - Class in net.imglib2
An abstract class that implements the RealLocalizable interface using an array of doubles to maintain position
AbstractRealLocalizable(int) - Constructor for class net.imglib2.AbstractRealLocalizable
 
AbstractRealLocalizable(double[]) - Constructor for class net.imglib2.AbstractRealLocalizable
Protected constructor that re-uses the passed position array.
AbstractRealMaskPoint - Class in net.imglib2.roi.util
 
AbstractRealMaskPoint(int) - Constructor for class net.imglib2.roi.util.AbstractRealMaskPoint
 
AbstractRealMaskPoint(double[]) - Constructor for class net.imglib2.roi.util.AbstractRealMaskPoint
 
AbstractRealMaskPoint(RealLocalizable) - Constructor for class net.imglib2.roi.util.AbstractRealMaskPoint
 
AbstractRealTransformSequence<R extends RealTransform> - Class in net.imglib2.realtransform
Shared properties of RealTransformSequence and InvertibleRealTransformSequence, sequences of something that extends RealTransforms.
AbstractRealTransformSequence() - Constructor for class net.imglib2.realtransform.AbstractRealTransformSequence
 
AbstractRealType<T extends AbstractRealType<T>> - Class in net.imglib2.type.numeric.real
TODO
AbstractRealType() - Constructor for class net.imglib2.type.numeric.real.AbstractRealType
 
AbstractRegionOfInterest - Class in net.imglib2.roi
Deprecated.
AbstractRegionOfInterest(int) - Constructor for class net.imglib2.roi.AbstractRegionOfInterest
Deprecated.
 
AbstractRegionOfInterest.AROIRandomAccess - Class in net.imglib2.roi
Deprecated.
The AROIRandomAccess inner class implements the random access part of the ROI, allowing random sampling of pixel membership in the ROI.
AbstractScale - Class in net.imglib2.realtransform
n-d arbitrary scaling.
AbstractScale(double[], RealPoint[]) - Constructor for class net.imglib2.realtransform.AbstractScale
 
AbstractScale(double...) - Constructor for class net.imglib2.realtransform.AbstractScale
 
AbstractShearTransform - Class in net.imglib2.transform.integer.shear
Most simple case of a shear transform that just implements for a integer valued coordinate: coordinate[ shearDimension ] += coordinate[ referenceDimension ] (forward) coordinate[ shearDimension ] -= coordinate[ referenceDimension ] (backward) This abstract class holds the inverse and implements applyInverse in terms of inverse.apply
AbstractShearTransform(int, int, int) - Constructor for class net.imglib2.transform.integer.shear.AbstractShearTransform
 
AbstractShearTransform(int, int, int, AbstractShearTransform) - Constructor for class net.imglib2.transform.integer.shear.AbstractShearTransform
 
AbstractShortArray<A extends AbstractShortArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractShortArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
AbstractShortArray(short[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
AbstractShortArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractShortArrayIo
 
AbstractStridedUnsafeLongAccess - Class in net.imglib2.img.basictypelongaccess.unsafe
 
AbstractStridedUnsafeLongAccess(int, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.AbstractStridedUnsafeLongAccess
 
AbstractTranslation - Class in net.imglib2.realtransform
n-d translation.
AbstractTranslation(double[], RealPoint[]) - Constructor for class net.imglib2.realtransform.AbstractTranslation
 
AbstractTranslation(int) - Constructor for class net.imglib2.realtransform.AbstractTranslation
 
AbstractTranslation(double...) - Constructor for class net.imglib2.realtransform.AbstractTranslation
 
AbstractUncheckedVolatileCache<K,V> - Interface in net.imglib2.cache.volatiles
 
AbstractUnsafeCursor<T extends NativeLongAccessType<T>> - Class in net.imglib2.img.unsafe
AbstractUnsafeCursor(AbstractUnsafeCursor<T>) - Constructor for class net.imglib2.img.unsafe.AbstractUnsafeCursor
TODO Javadoc
AbstractUnsafeCursor(UnsafeImg<T, ?>, long, long) - Constructor for class net.imglib2.img.unsafe.AbstractUnsafeCursor
TODO Javadoc
AbstractUnsafeLocalizingCursor<T extends NativeLongAccessType<T>> - Class in net.imglib2.img.unsafe
Localizing Cursor on an UnsafeImg.
AbstractUnsafeLocalizingCursor(AbstractUnsafeLocalizingCursor<T>) - Constructor for class net.imglib2.img.unsafe.AbstractUnsafeLocalizingCursor
TODO Javadoc
AbstractUnsafeLocalizingCursor(UnsafeImg<T, ?>, long, long) - Constructor for class net.imglib2.img.unsafe.AbstractUnsafeLocalizingCursor
TODO Javadoc
AbstractVirtualStack - Class in net.imglib2.img.display.imagej
Abstract class to simplify the implementation of an VirtualStack.
AbstractVirtualStack(int, int, int, int) - Constructor for class net.imglib2.img.display.imagej.AbstractVirtualStack
 
AbstractVolatileBooleanArray<A extends AbstractVolatileBooleanArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileBooleanArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileBooleanArray
 
AbstractVolatileBooleanArray(boolean[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileBooleanArray
 
AbstractVolatileByteArray<A extends AbstractVolatileByteArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileByteArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
 
AbstractVolatileByteArray(byte[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
 
AbstractVolatileCache<K,V> - Interface in net.imglib2.cache.volatiles
 
AbstractVolatileCharArray<A extends AbstractVolatileCharArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileCharArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
 
AbstractVolatileCharArray(char[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
 
AbstractVolatileDoubleArray<A extends AbstractVolatileDoubleArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileDoubleArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
 
AbstractVolatileDoubleArray(double[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
 
AbstractVolatileFloatArray<A extends AbstractVolatileFloatArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileFloatArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
 
AbstractVolatileFloatArray(float[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
 
AbstractVolatileIntArray<A extends AbstractVolatileIntArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileIntArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
 
AbstractVolatileIntArray(int[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
 
AbstractVolatileLongArray<A extends AbstractVolatileLongArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileLongArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
 
AbstractVolatileLongArray(long[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
 
AbstractVolatileNativeNumericType<N extends NumericType<N> & NativeType<N>,T extends AbstractVolatileNativeNumericType<N,T>> - Class in net.imglib2.type.volatiles
Abstract base class for VolatileNumericTypes that wrap native NumericTypes.
AbstractVolatileNativeNumericType(N, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNativeNumericType
 
AbstractVolatileNativeRealType<R extends RealType<R> & NativeType<R>,T extends AbstractVolatileNativeRealType<R,T>> - Class in net.imglib2.type.volatiles
Abstract base class for VolatileRealTypes that wrap native RealTypes.
AbstractVolatileNativeRealType(R, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNativeRealType
 
AbstractVolatileNumericType<N extends NumericType<N>,T extends AbstractVolatileNumericType<N,T>> - Class in net.imglib2.type.volatiles
Abstract base class for VolatileNumericTypes that wrap a NumericType that is either VALID or INVALID.
AbstractVolatileNumericType(N, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
AbstractVolatileNumericType(N) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
AbstractVolatileRealType<R extends RealType<R>,T extends AbstractVolatileRealType<R,T>> - Class in net.imglib2.type.volatiles
Abstract base class for VolatileRealTypes that wrap RealType.
AbstractVolatileRealType(R, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileRealType
 
AbstractVolatileShortArray<A extends AbstractVolatileShortArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileShortArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
 
AbstractVolatileShortArray(short[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
 
AbstractWrappedInterval<I extends Interval> - Class in net.imglib2
Convenient base class for IterableIntervals, RandomAccessibleIntervals, etc that forward the Interval interface to, for example, their source accessible.
AbstractWrappedInterval(I) - Constructor for class net.imglib2.AbstractWrappedInterval
 
AbstractWrappedLocalizable<L extends Localizable> - Class in net.imglib2
Convenient base class for accessors etc, that source all Localizable calls to a Localizable source.
AbstractWrappedLocalizable(L) - Constructor for class net.imglib2.AbstractWrappedLocalizable
 
AbstractWrappedPositionableLocalizable<P extends Positionable & Localizable> - Class in net.imglib2
Convenient base class for accessors etc, that source all Localizable and Positionable calls to a Localizable & Positionable source.
AbstractWrappedPositionableLocalizable(P) - Constructor for class net.imglib2.AbstractWrappedPositionableLocalizable
 
AbstractWrappedRealInterval<I extends RealInterval> - Class in net.imglib2
Convenient base class for IterableRealIntervals, etc that forward the RealInterval interface to, for example, their source accessible.
AbstractWrappedRealInterval(I) - Constructor for class net.imglib2.AbstractWrappedRealInterval
 
AbstractWritableBox - Class in net.imglib2.roi.geom.real
Abstract base class for implementations of WritableBox.
AbstractWritableBox(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.AbstractWritableBox
Creates an n-d rectangular RealMask.
AbstractWritableEllipsoid - Class in net.imglib2.roi.geom.real
Abstract base class for WritableEllipsoid implementations.
AbstractWritableEllipsoid(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.AbstractWritableEllipsoid
Creates an n-d ellipsoid, where n is determined by the length of the smaller array.
AbstractWritableSphere - Class in net.imglib2.roi.geom.real
Abstract base class for WritableSphere implementations.
AbstractWritableSphere(double[], double) - Constructor for class net.imglib2.roi.geom.real.AbstractWritableSphere
Creates an n-d sphere.
AbstractWritableSuperEllipsoid - Class in net.imglib2.roi.geom.real
Abstract base class for WritableSuperEllipsoid implementations.
AbstractWritableSuperEllipsoid(double[], double[], double) - Constructor for class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
Creates an n-d superellipsoid, where n is determined by the length of the smaller array.
acc - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorRealType
 
acc - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType
 
accA - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
 
accA - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
accB - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
 
accB - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
accept(RandomAccessibleInterval<S>) - Method in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
accept(T, U) - Method in interface net.imglib2.algorithm.fill.Filter
Deprecated.
 
accept(T) - Method in interface net.imglib2.algorithm.tree.TreeUtils.Consumer
 
accept(long) - Method in class net.imglib2.loops.FastCursorLoops.FiveCursorLoop
 
accept(long) - Method in class net.imglib2.loops.FastCursorLoops.FourCursorLoop
 
accept(long) - Method in class net.imglib2.loops.FastCursorLoops.OneCursorLoop
 
accept(long) - Method in class net.imglib2.loops.FastCursorLoops.SixCursorLoop
 
accept(long) - Method in class net.imglib2.loops.FastCursorLoops.ThreeCursorLoop
 
accept(long) - Method in class net.imglib2.loops.FastCursorLoops.TwoCursorLoop
 
accept(A, B, C, D, E) - Method in interface net.imglib2.loops.LoopBuilder.FiveConsumer
 
accept(A, B, C, D) - Method in interface net.imglib2.loops.LoopBuilder.FourConsumer
 
accept(A, B, C, D, E, F) - Method in interface net.imglib2.loops.LoopBuilder.SixConsumer
 
accept(A, B, C) - Method in interface net.imglib2.loops.LoopBuilder.TriConsumer
 
acceptUnpadded(RandomAccessibleInterval<S>) - Method in class net.imglib2.algorithm.bspline.BSplineDecomposition
Compute coefficients.
accessAxes - Variable in class net.imglib2.view.HyperSlicesView
 
Accesses - Interface in net.imglib2.img.basictypeaccess
Utility and helper methods for accesses (ByteAccess etc).
accessFlags() - Method in class net.imglib2.cache.img.DiskCachedCellImgOptions.Values
 
accessFlags() - Method in class net.imglib2.cache.img.ReadOnlyCachedCellImgOptions.Values
 
AccessFlags - Enum in net.imglib2.img.basictypeaccess
Flags that specify variants of ArrayDataAccess underlying primitive types.
AccessIo<A> - Interface in net.imglib2.cache.img
Serialize/deserialize an access to/from a ByteBuffer.
AccessIo.AbstractByteArrayIo<A extends AbstractByteArray<A>> - Class in net.imglib2.cache.img
 
AccessIo.AbstractCharArrayIo<A extends AbstractCharArray<A>> - Class in net.imglib2.cache.img
 
AccessIo.AbstractDoubleArrayIo<A extends AbstractDoubleArray<A>> - Class in net.imglib2.cache.img
 
AccessIo.AbstractFloatArrayIo<A extends AbstractFloatArray<A>> - Class in net.imglib2.cache.img
 
AccessIo.AbstractIntArrayIo<A extends AbstractIntArray<A>> - Class in net.imglib2.cache.img
 
AccessIo.AbstractLongArrayIo<A extends AbstractLongArray<A>> - Class in net.imglib2.cache.img
 
AccessIo.AbstractShortArrayIo<A extends AbstractShortArray<A>> - Class in net.imglib2.cache.img
 
AccessIo.ByteArrayType - Class in net.imglib2.cache.img
 
AccessIo.CharArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyByteArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyCharArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyDoubleArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyFloatArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyIntArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyLongArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyShortArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyVolatileByteArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyVolatileCharArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyVolatileDoubleArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyVolatileFloatArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyVolatileIntArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyVolatileLongArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyVolatileShortArrayType - Class in net.imglib2.cache.img
 
AccessIo.DoubleArrayType - Class in net.imglib2.cache.img
 
AccessIo.FloatArrayType - Class in net.imglib2.cache.img
 
AccessIo.IntArrayType - Class in net.imglib2.cache.img
 
AccessIo.LongArrayType - Class in net.imglib2.cache.img
 
AccessIo.ShortArrayType - Class in net.imglib2.cache.img
 
AccessIo.VolatileByteArrayType - Class in net.imglib2.cache.img
 
AccessIo.VolatileCharArrayType - Class in net.imglib2.cache.img
 
AccessIo.VolatileDoubleArrayType - Class in net.imglib2.cache.img
 
AccessIo.VolatileFloatArrayType - Class in net.imglib2.cache.img
 
AccessIo.VolatileIntArrayType - Class in net.imglib2.cache.img
 
AccessIo.VolatileLongArrayType - Class in net.imglib2.cache.img
 
AccessIo.VolatileShortArrayType - Class in net.imglib2.cache.img
 
AccessOptions<T> - Interface in net.imglib2.cache.img.optional
Optional arguments that specify whether accesses should be dirty (default false) volatile (default true)
AccessOptions.Val - Interface in net.imglib2.cache.img.optional
 
accG - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
 
accG - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
accR - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
 
accR - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
accumulate(int) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
accumulator - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
Add - Class in net.imglib2.algorithm.math
 
Add(Object, Object) - Constructor for class net.imglib2.algorithm.math.Add
 
Add(Object...) - Constructor for class net.imglib2.algorithm.math.Add
 
add(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
add(Object...) - Static method in class net.imglib2.algorithm.math.ImgMath
 
add(RandomAccessible<T>, Localizable, long, T) - Static method in class net.imglib2.algorithm.region.Circles
Writes a circle in the target RandomAccessible.
add(RandomAccessible<T>, Localizable, long, int, int, T) - Static method in class net.imglib2.algorithm.region.Circles
Writes a circle in the target RandomAccessible.
add(RandomAccessible<T>, Localizable, long, long, T) - Static method in class net.imglib2.algorithm.region.Ellipses
Writes an ellipse in the target RandomAccessible.
add(RandomAccessible<T>, Localizable, long, long, int, int, T) - Static method in class net.imglib2.algorithm.region.Ellipses
Writes an ellipse in the target RandomAccessible.
add(T1) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
add(int, T1) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
add(Point, T) - Method in class net.imglib2.PointSampleList
 
add(RealPoint, T) - Method in class net.imglib2.RealPointSampleList
 
add(R) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence
Append a RealTransform to the sequence.
add(T) - Method in class net.imglib2.roi.labeling.LabelingType
 
add(Localizable) - Method in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
Accumulate the given coordinates.
add(BitType) - Method in class net.imglib2.type.logic.BitType
 
add(NativeBoolType) - Method in class net.imglib2.type.logic.NativeBoolType
 
add(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
add(ARGBLongAccessType) - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
add(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
 
add(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
add(ComplexFloatLongAccessType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
add(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
add(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
add(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
add(UnsignedByteLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
add(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
add(UnsignedIntLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
add(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
add(UnsignedLongLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
add(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
add(UnsignedShortLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
add(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
add(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
add(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
add(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
Add<T> - Interface in net.imglib2.type.operators
 
add(T) - Method in interface net.imglib2.type.operators.Add
 
add(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
add(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
add(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
set c = a + b.
add(double[][], double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set C = A + B.
add(double) - Method in class net.imglib2.util.RealSum
Add an element to the sum.
add(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
addAll(Collection<? extends T1>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
addAll(int, Collection<? extends T1>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
addAll(Collection<? extends T>) - Method in class net.imglib2.roi.labeling.LabelingType
 
addData(Iterable<T>) - Method in class net.imglib2.histogram.Histogram1d
Counts additional data contained in a given iterable collection.
addData(Iterable<List<T>>) - Method in class net.imglib2.histogram.HistogramNd
Counts additional data contained in a given iterable collection.
addData(List<Iterable<T>>) - Method in class net.imglib2.histogram.HistogramNd
Counts additional data contained in a given iterable collection.
addDeleteHook(Path) - Static method in class net.imglib2.cache.img.DiskCellCache
Register a path for deletion when the virtual machine shuts down.
addDimension(RealRandomAccessible<T>) - Static method in class net.imglib2.realtransform.RealViews
Add a dimension to a RealRandomAccessible.
addDimension(Interval, long, long) - Static method in class net.imglib2.util.Intervals
Create new interval by adding a dimension to the source Interval.
addDimension(RandomAccessible<T>) - Static method in class net.imglib2.view.Views
Create view which adds a dimension to the source RandomAccessible .
addDimension(RandomAccessibleInterval<T>, long, long) - Static method in class net.imglib2.view.Views
Create view which adds a dimension to the source RandomAccessibleInterval.
addDimension(int) - Static method in class net.imglib2.view.ViewTransforms
Returns the transformation that is used by Views.addDimension(RandomAccessible).
addEllipticGaussianSpotToImage(RandomAccessibleInterval<T>, double[]) - Static method in class net.imglib2.algorithm.localization.LocalizationUtils
 
addGaussianNoiseToImage(RandomAccessibleInterval<T>, double) - Static method in class net.imglib2.algorithm.localization.LocalizationUtils
 
addGaussianSpotToImage(RandomAccessibleInterval<T>, double[]) - Static method in class net.imglib2.algorithm.localization.LocalizationUtils
 
Addition<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
Addition(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.Addition
 
addPoint(L) - Method in class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection
 
addPoint(L) - Method in class net.imglib2.roi.geom.real.RealPointSampleListWritableRealPointCollection
 
addPoint(L) - Method in interface net.imglib2.roi.geom.real.WritableRealPointCollection
Adds a point to the collection.
addPosition(Localizable) - Method in interface net.imglib2.algorithm.componenttree.PartialComponent
Add a pixel to the set of pixels represented by this component.
addPosition(Localizable) - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelList
Append a pixel location to the list.
addSlice(String) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
addSlice(String, Object) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
addSlice(String, ImageProcessor) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
addSlice(String, ImageProcessor, int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
addSlice(ImageProcessor) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
addUnsignedShortSlice(String, Object) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
addVertex(int, RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
If the given vertex has more than 2 dimensions, the higher dimensions will be ignored.
addVertex(int, RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline
 
addVertex(int, double[]) - Method in interface net.imglib2.roi.geom.real.WritablePolygon2D
addVertex(int, RealLocalizable) - Method in interface net.imglib2.roi.geom.real.WritablePolyshape
Adds a vertex at the given index.
addVertex(int, RealLocalizable) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
Insert a point into the polygon at the given index
addVertices(int, Collection<RealLocalizable>) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
 
addVertices(int, Collection<RealLocalizable>) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline
 
addVertices(int, Collection<RealLocalizable>) - Method in interface net.imglib2.roi.geom.real.WritablePolyshape
Adds vertices starting at the given index.
affine(RealRandomAccessible<T>, AffineGet) - Static method in class net.imglib2.realtransform.RealViews
See a RealRandomAccessible as a RandomAccessible transformed by an AffineGet.
AffineGet - Interface in net.imglib2.realtransform
An n-dimensional affine transformation whose n×( n+1) affine transformation matrix can be accessed via row and column index.
AffineMatrix2D() - Constructor for class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D
 
AffineMatrix3D() - Constructor for class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
AffineMatrix3D(double...) - Constructor for class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
AffineRandomAccess() - Constructor for class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
AffineRandomAccess(AffineRandomAccessible<T, R>.AffineRandomAccess) - Constructor for class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
AffineRandomAccessible<T,R extends AffineGet> - Class in net.imglib2.realtransform
A RandomAccessible whose samples are generated by rasterizing a RealRandomAccessible transformed by an affine transformation.
AffineRandomAccessible(RealRandomAccessible<T>, R) - Constructor for class net.imglib2.realtransform.AffineRandomAccessible
 
AffineRandomAccessible.AffineRandomAccess - Class in net.imglib2.realtransform
RealRandomAccess that generates its samples from a source RealRandomAccessible at coordinates transformed by a RealTransform.
affineReal(RealRandomAccessible<T>, AffineGet) - Static method in class net.imglib2.realtransform.RealViews
See a RealRandomAccessible as transformed by an AffineGet .
AffineRealRandomAccess() - Constructor for class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
AffineRealRandomAccessible<T,R extends AffineGet> - Class in net.imglib2.realtransform
A RealRandomAccessible whose samples are generated from a RealRandomAccessible transformed by an affine transformation.
AffineRealRandomAccessible(RealRandomAccessible<T>, R) - Constructor for class net.imglib2.realtransform.AffineRealRandomAccessible
 
AffineRealRandomAccessible.AffineRealRandomAccess - Class in net.imglib2.realtransform
RealRandomAccess that generates its samples from a source RealRandomAccessible at coordinates transformed by a RealTransform.
AffineSet - Interface in net.imglib2.realtransform
An n-dimensional affine transformation whose n×( n+1) affine transformation matrix can be set via row and column index and from double arrays.
AffineTransform - Class in net.imglib2.realtransform
An n-dimensional affine transformation.
AffineTransform(int) - Constructor for class net.imglib2.realtransform.AffineTransform
 
AffineTransform(Matrix, double[]) - Constructor for class net.imglib2.realtransform.AffineTransform
 
AffineTransform(Matrix) - Constructor for class net.imglib2.realtransform.AffineTransform
 
AffineTransform(double...) - Constructor for class net.imglib2.realtransform.AffineTransform
 
AffineTransform(AffineTransform) - Constructor for class net.imglib2.realtransform.AffineTransform
 
AffineTransform2D - Class in net.imglib2.realtransform
2d-affine transformation.
AffineTransform2D() - Constructor for class net.imglib2.realtransform.AffineTransform2D
 
AffineTransform2D(AffineTransform2D.AffineMatrix2D) - Constructor for class net.imglib2.realtransform.AffineTransform2D
 
AffineTransform2D(AffineTransform2D) - Constructor for class net.imglib2.realtransform.AffineTransform2D
 
AffineTransform2D.AffineMatrix2D - Class in net.imglib2.realtransform
 
AffineTransform3D - Class in net.imglib2.realtransform
3d-affine transformation.
AffineTransform3D() - Constructor for class net.imglib2.realtransform.AffineTransform3D
 
AffineTransform3D(AffineTransform3D.AffineMatrix3D) - Constructor for class net.imglib2.realtransform.AffineTransform3D
 
AffineTransform3D(AffineTransform3D) - Constructor for class net.imglib2.realtransform.AffineTransform3D
 
AffineTransform3D.AffineMatrix3D - Class in net.imglib2.realtransform
 
age - Variable in class net.imglib2.algorithm.labeling.Watershed.PixelIntensity
 
Algorithm - Interface in net.imglib2.algorithm
TODO This interface should extend Runnable
AllConnectedComponents - Class in net.imglib2.algorithm.labeling
Deprecated.
AllConnectedComponents() - Constructor for class net.imglib2.algorithm.labeling.AllConnectedComponents
Deprecated.
 
AllConnectedComponents.PositionStack - Class in net.imglib2.algorithm.labeling
Deprecated.
 
allDone - Variable in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
 
allMask(int) - Static method in class net.imglib2.roi.Masks
Creates a Mask which returns true for all locations.
allMatch(Predicate<T>, List<T>) - Static method in class net.imglib2.loops.ListUtils
 
allMatch(Predicate<T>, T[]) - Static method in class net.imglib2.loops.ListUtils
 
allowedToMoveInDim - Variable in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
allowMaximaTolerance - Variable in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
allPositive(long...) - Static method in interface net.imglib2.Dimensions
Check whether all entries in dimensions are positive
allPositive(int...) - Static method in interface net.imglib2.Dimensions
Check whether all entries in dimensions are positive
allRealMask(int) - Static method in class net.imglib2.roi.Masks
Creates a RealMask which returns true for all locations.
ALPHA - Static variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
ALPHA - Static variable in interface net.imglib2.display.ColorTable
 
alpha - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
alpha(int) - Static method in class net.imglib2.type.numeric.ARGBLongAccessType
 
alpha(int) - Static method in class net.imglib2.type.numeric.ARGBType
 
AND(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
AND(Object...) - Static method in class net.imglib2.algorithm.math.ImgMath
 
and(BoundaryType) - Method in enum net.imglib2.roi.BoundaryType
 
AND - Static variable in class net.imglib2.roi.Bounds
 
and(B) - Method in class net.imglib2.roi.Bounds
 
and(RegionOfInterest) - Method in class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
Make the region the union of the current and this
and(Predicate<? super Localizable>) - Method in interface net.imglib2.roi.Mask
 
and(Predicate<? super Localizable>) - Method in interface net.imglib2.roi.MaskInterval
 
and(Predicate<? super T>) - Method in interface net.imglib2.roi.MaskPredicate
 
and(Mask, Predicate<? super Localizable>) - Static method in class net.imglib2.roi.Masks
 
and(MaskInterval, Predicate<? super Localizable>) - Static method in class net.imglib2.roi.Masks
 
and(RealMask, Predicate<? super RealLocalizable>) - Static method in class net.imglib2.roi.Masks
 
and(RealMaskRealInterval, Predicate<? super RealLocalizable>) - Static method in class net.imglib2.roi.Masks
 
AND - Static variable in class net.imglib2.roi.Operators
 
and(Predicate<? super RealLocalizable>) - Method in interface net.imglib2.roi.RealMask
 
and(Predicate<? super RealLocalizable>) - Method in interface net.imglib2.roi.RealMaskRealInterval
 
and(T) - Method in interface net.imglib2.type.BooleanType
 
and(BitType) - Method in class net.imglib2.type.logic.BitType
 
and(boolean) - Method in class net.imglib2.type.logic.BoolType
 
and(BoolType) - Method in class net.imglib2.type.logic.BoolType
 
and(NativeBoolType) - Method in class net.imglib2.type.logic.NativeBoolType
 
AndLogical - Class in net.imglib2.algorithm.math
 
AndLogical(Object, Object) - Constructor for class net.imglib2.algorithm.math.AndLogical
 
AndLogical(Object...) - Constructor for class net.imglib2.algorithm.math.AndLogical
 
angleFromR(double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
compute the angle of rotation from a rotation matrix.
AngleRegionOfInterest - Class in net.imglib2.roi
Deprecated.
AngleRegionOfInterest() - Constructor for class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
AngleRegionOfInterest(double[], double[], double[]) - Constructor for class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
anyMatch(Predicate<T>, T[]) - Static method in class net.imglib2.loops.ListUtils
 
append(DiskCachedCellImgOptions) - Method in class net.imglib2.cache.img.DiskCachedCellImgOptions
 
append(ReadOnlyCachedCellImgOptions) - Method in class net.imglib2.cache.img.ReadOnlyCachedCellImgOptions
 
apply(long[]) - Method in class net.imglib2.algorithm.util.Grids.CreateAndCropBlockToFitInterval
 
apply(long[]) - Method in class net.imglib2.algorithm.util.Grids.GetGridCoordinates
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractAffineTransform
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractAffineTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractAffineTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractScale
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractScale
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractScale
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractTranslation
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractTranslation
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractTranslation
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AffineTransform2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AffineTransform3D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.DeformationFieldTransform
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.DeformationFieldTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.DeformationFieldTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.InterpolatedRealTransform
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.InterpolatedRealTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.InterpolatedRealTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
Deprecated.
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.InversePerspective3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.InversePerspective3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.InversePerspective3D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.InverseRealTransform
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.InverseRealTransform
Deprecated.
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.InverseRealTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.Perspective3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.Perspective3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Perspective3D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.PolynomialTransform2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.PolynomialTransform2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.PolynomialTransform2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.PositionFieldTransform
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.PositionFieldTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.PositionFieldTransform
 
apply(double[], double[]) - Method in interface net.imglib2.realtransform.RealTransform
Apply the RealTransform to a source vector to obtain a target vector.
apply(float[], float[]) - Method in interface net.imglib2.realtransform.RealTransform
Deprecated.
use double precision instead
apply(RealLocalizable, RealPositionable) - Method in interface net.imglib2.realtransform.RealTransform
Apply the RealTransform to a source RealLocalizable to obtain a target RealPositionable.
apply() - Method in class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess
 
apply() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.Scale2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.Scale2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Scale2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.Scale3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.Scale3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Scale3D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.ThinplateSplineTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ThinplateSplineTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.Translation2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.Translation2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Translation2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.Translation3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.Translation3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Translation3D
 
apply(B, B) - Method in interface net.imglib2.roi.Bounds.BinaryBoundsOperator
 
apply(B) - Method in interface net.imglib2.roi.Bounds.UnaryBoundsOperator
 
apply(Predicate<? super Localizable>, Predicate<? super Localizable>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator
 
apply(Predicate<? super Localizable>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.MixedTransform
 
apply(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.SlicingTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.SlicingTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.SlicingTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.TranslationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.InverseTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.InverseTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.InverseTransform
 
apply(long[], long[]) - Method in interface net.imglib2.transform.Transform
Apply the Transform to a source vector to obtain a target vector.
apply(int[], int[]) - Method in interface net.imglib2.transform.Transform
Apply the Transform to a source vector to obtain a target vector.
apply(Localizable, Positionable) - Method in interface net.imglib2.transform.Transform
Apply the Transform to a source Localizable to obtain a target Positionable.
applyChecked(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
applyInterval(Predicate<? super Localizable>, Predicate<? super Localizable>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator
 
applyInterval(Predicate<? super Localizable>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AbstractScale
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AbstractScale
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AbstractScale
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AbstractTranslation
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AbstractTranslation
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AbstractTranslation
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AffineTransform
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AffineTransform2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AffineTransform3D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.InversePerspective3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.InversePerspective3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.InversePerspective3D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.InverseRealTransform
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.InverseRealTransform
Deprecated.
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.InverseRealTransform
 
applyInverse(double[], double[]) - Method in interface net.imglib2.realtransform.InvertibleRealTransform
Apply the inverse transform to a target vector to obtain a source vector.
applyInverse(float[], float[]) - Method in interface net.imglib2.realtransform.InvertibleRealTransform
Deprecated.
Use double precision instead
applyInverse(RealPositionable, RealLocalizable) - Method in interface net.imglib2.realtransform.InvertibleRealTransform
Apply the inverse transform to a target RealLocalizable to obtain a source RealPositionable.
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Perspective3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Perspective3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Perspective3D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Scale2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Scale2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Scale2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Scale3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Scale3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Scale3D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Translation2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Translation2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Translation2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Translation3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Translation3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Translation3D
 
applyInverse(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.TranslationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.InverseTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.InverseTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.InverseTransform
 
applyInverse(long[], long[]) - Method in interface net.imglib2.transform.InvertibleTransform
Apply the inverse transform to a target vector to obtain a source vector.
applyInverse(int[], int[]) - Method in interface net.imglib2.transform.InvertibleTransform
Apply the inverse transform to a target vector to obtain a source vector.
applyInverse(Positionable, Localizable) - Method in interface net.imglib2.transform.InvertibleTransform
Apply the inverse transform to a target Localizable to obtain a source Positionable.
applyInverseChecked(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
applyReal(Predicate<? super RealLocalizable>, Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator
 
applyReal(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.RealTransformMaskOperator
 
applyReal(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator
 
applyRealInterval(Predicate<? super RealLocalizable>, Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator
 
applyRealInterval(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.RealTransformMaskOperator
 
applyRealInterval(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator
 
applyTaskExecutorToThreadFactory(Supplier<TaskExecutor>, ThreadFactory) - Static method in class net.imglib2.parallel.TaskExecutors
Returns a ThreadFactory.
arg0() - Method in interface net.imglib2.roi.composite.BinaryCompositeMaskPredicate
 
arg0() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
 
arg0() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
 
arg0() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
 
arg0() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
 
arg0() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask
 
arg0() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
 
arg0() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
 
arg0() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
 
arg0() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
 
arg0() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
 
arg0() - Method in interface net.imglib2.roi.composite.UnaryCompositeMaskPredicate
 
arg1() - Method in interface net.imglib2.roi.composite.BinaryCompositeMaskPredicate
 
arg1() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
 
arg1() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
 
arg1() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
 
arg1() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
 
argb(int) - Method in class net.imglib2.display.AbstractArrayColorTable
 
argb(int) - Method in interface net.imglib2.display.ArrayColorTable
Converts the tuple at the given position into a packed ARGB value.
ARGB_COLOR_MODEL - Static variable in class net.imglib2.display.screenimage.awt.ARGBScreenImage
 
ARGBARGBDoubleConverter<T extends AbstractARGBDoubleType<?>> - Class in net.imglib2.converter
 
ARGBARGBDoubleConverter() - Constructor for class net.imglib2.converter.ARGBARGBDoubleConverter
 
argbChannel(RandomAccessibleInterval<ARGBType>, int) - Static method in class net.imglib2.converter.Converters
Create a WriteConvertedRandomAccessibleInterval to one of the four channels encoded in a RandomAccessibleInterval of ARGBType.
argbChannel(RandomAccessible<ARGBType>, int) - Static method in class net.imglib2.converter.Converters
Create a WriteConvertedRandomAccessible to one of the four channels encoded in a RandomAccessible of ARGBType.
argbChannels(RandomAccessibleInterval<ARGBType>) - Static method in class net.imglib2.converter.Converters
Create an (n+1)-dimensional RandomAccessible of an n-dimensional RandomAccessible that maps the four channels encoded in ARGBType into a dimension.
argbChannels(RandomAccessibleInterval<ARGBType>, int...) - Static method in class net.imglib2.converter.Converters
Create an (n+1)-dimensional RandomAccessible of an n-dimensional RandomAccessible that maps the four channels encoded in ARGBType into a dimension.
ARGBChannelSamplerConverter - Class in net.imglib2.converter.readwrite
Access the on channel of an ARGBType as an UnsignedByteType.
ARGBChannelSamplerConverter(int) - Constructor for class net.imglib2.converter.readwrite.ARGBChannelSamplerConverter
 
ARGBConverter - Class in net.imglib2.converter.longaccess
 
ARGBConverter() - Constructor for class net.imglib2.converter.longaccess.ARGBConverter
 
ARGBDoubleARGBConverter<T extends AbstractARGBDoubleType<?>> - Class in net.imglib2.converter
 
ARGBDoubleARGBConverter() - Constructor for class net.imglib2.converter.ARGBDoubleARGBConverter
 
ARGBDoubleType - Class in net.imglib2.type.numeric
 
ARGBDoubleType() - Constructor for class net.imglib2.type.numeric.ARGBDoubleType
 
ARGBDoubleType(double, double, double, double) - Constructor for class net.imglib2.type.numeric.ARGBDoubleType
 
ARGBLongAccessType - Class in net.imglib2.type.numeric
 
ARGBLongAccessType(NativeLongAccessImg<?, ? extends IntLongAccess>) - Constructor for class net.imglib2.type.numeric.ARGBLongAccessType
 
ARGBLongAccessType(int) - Constructor for class net.imglib2.type.numeric.ARGBLongAccessType
 
ARGBLongAccessType(IntLongAccess) - Constructor for class net.imglib2.type.numeric.ARGBLongAccessType
 
ARGBLongAccessType() - Constructor for class net.imglib2.type.numeric.ARGBLongAccessType
 
ARGBLongAccessTypeARGBTypeConverter - Class in net.imglib2.converter.readwrite.longaccess
 
ARGBLongAccessTypeARGBTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.ARGBLongAccessTypeARGBTypeConverter
 
ARGBLongAccessTypeARGBTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess
 
argbs(long...) - Static method in class net.imglib2.img.array.ArrayImgs
argbs(int[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ARGBType, IntArray> reusing a passed int[] array.
argbs(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ARGBType, IntAccess> using a IntAccess passed as argument.
argbs(long...) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs
argbs(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
argbs(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
argbs(IntLongAccess, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
Creates an UnsafeImg<ARGBType, IntArray> reusing a passed int[] array.
ARGBScreenImage - Class in net.imglib2.display.screenimage.awt
 
ARGBScreenImage(int, int) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage
 
ARGBScreenImage(int, int, IntArray) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage
Create an Image with data.
ARGBScreenImage(int, int, int[]) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage
Create an Image with data.
ARGBType - Class in net.imglib2.type.numeric
A native NumericType that encodes four channels at unsigned byte precision into one 32bit signed integer which is the format used in most display oriented image processing libraries such as AWT or ImageJ.
ARGBType(NativeImg<?, ? extends IntAccess>) - Constructor for class net.imglib2.type.numeric.ARGBType
 
ARGBType(int) - Constructor for class net.imglib2.type.numeric.ARGBType
 
ARGBType(IntAccess) - Constructor for class net.imglib2.type.numeric.ARGBType
 
ARGBType() - Constructor for class net.imglib2.type.numeric.ARGBType
 
armijoCondition(double, double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
Returns true if the armijo condition is satisfied.
AROIClippedIterableInterval(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval
Deprecated.
 
AROICursor(AbstractIterableRegionOfInterest.AROIIterableInterval<T>.AROICursor) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
AROICursor() - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
AROIIterableInterval(RandomAccessible<T>) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
AROIIterationOrder() - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterationOrder
Deprecated.
 
AROIRandomAccess(AbstractRegionOfInterest.AROIRandomAccess) - Constructor for class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
AROIRandomAccess() - Constructor for class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
ArrayColorTable<T> - Interface in net.imglib2.display
Interface for all ColorTable implementations that use an array to store their color table information.
ArrayCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
ArrayCursor(ArrayCursor<T>) - Constructor for class net.imglib2.img.array.ArrayCursor
 
ArrayCursor(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayCursor
 
ArrayDataAccess<A> - Interface in net.imglib2.img.basictypeaccess.array
Trivial interface for primitive array based data access implementations that can replicate themselves and return the underlying array.
ArrayDataAccessFactory - Class in net.imglib2.img.basictypeaccess
Given a PrimitiveType and AccessFlags creates a specific ArrayDataAccess.
ArrayDataAccessFactory() - Constructor for class net.imglib2.img.basictypeaccess.ArrayDataAccessFactory
 
ArrayImg<T extends NativeType<T>,A> - Class in net.imglib2.img.array
This Img stores an image in a single linear array of basic types.
ArrayImg(A, long[], Fraction) - Constructor for class net.imglib2.img.array.ArrayImg
 
ArrayImgAWTScreenImage<T extends NativeType<T>,A> - Class in net.imglib2.display.screenimage.awt
An AWTScreenImage that is an ArrayImg.
ArrayImgAWTScreenImage(ArrayImg<T, A>) - Constructor for class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
 
ArrayImgAWTScreenImage(T, A, long[]) - Constructor for class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
 
ArrayImgFactory<T extends NativeType<T>> - Class in net.imglib2.img.array
Factory for ArrayImgs.
ArrayImgFactory(T) - Constructor for class net.imglib2.img.array.ArrayImgFactory
 
ArrayImgFactory() - Constructor for class net.imglib2.img.array.ArrayImgFactory
Deprecated.
ArrayImgs - Class in net.imglib2.img.array
Convenience factory methods for creation of ArrayImg instances with the most common pixel Type variants.
ArrayImgToVirtualStack - Class in net.imglib2.img.display.imagej
 
ArrayImgXYByteProjector<A extends GenericByteType<A>> - Class in net.imglib2.display.projector.specialized
Fast implementation of a AbstractProjector2D that selects a 2D data plain from an ByteType ArrayImg.
ArrayImgXYByteProjector(ArrayImg<A, ByteArray>, ArrayImg<UnsignedByteType, ByteArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.ArrayImgXYByteProjector
Normalizes an ArrayImg and writes the result into target.
ArrayImgXYShortProjector<A extends GenericShortType<A>> - Class in net.imglib2.display.projector.specialized
Fast implementation of a AbstractProjector2D that selects a 2D data plain from an ShortType ArrayImg.
ArrayImgXYShortProjector(ArrayImg<A, ShortArray>, ArrayImg<UnsignedShortType, ShortArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.ArrayImgXYShortProjector
Normalizes an ArrayImg and writes the result into target.
ArrayLocalizingCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
Localizing Cursor on an ArrayImg.
ArrayLocalizingCursor(ArrayLocalizingCursor<T>) - Constructor for class net.imglib2.img.array.ArrayLocalizingCursor
TODO Javadoc
ArrayLocalizingCursor(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayLocalizingCursor
TODO Javadoc
ArrayLocalizingSubIntervalCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
ArrayLocalizingSubIntervalCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
TODO Javadoc
ArrayLocalizingSubIntervalCursor(ArrayLocalizingSubIntervalCursor<T>) - Constructor for class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
TODO Javadoc
ArrayRandomAccess<T extends NativeType<T>> - Class in net.imglib2.img.array
ArrayRandomAccess(ArrayRandomAccess<T>) - Constructor for class net.imglib2.img.array.ArrayRandomAccess
 
ArrayRandomAccess(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayRandomAccess
 
ArraySubIntervalCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
ArraySubIntervalCursor(ArraySubIntervalCursor<T>) - Constructor for class net.imglib2.img.array.ArraySubIntervalCursor
TODO Javadoc
ArraySubIntervalCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.ArraySubIntervalCursor
TODO Javadoc
asArrayAccess(long, int, boolean, PrimitiveType) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
 
asByteArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
 
asCharArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
 
asDoubleArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
 
asDoubleArray(Iterable<? extends RealType<?>>) - Static method in class net.imglib2.util.Util
Returns the content of Iterable<RealType> as array of doubles.
asDoubleArray(RandomAccessibleInterval<? extends RealType<?>>) - Static method in class net.imglib2.util.Util
Returns the pixels of an RandomAccessibleInterval of RealType as array of doubles.
asDoubleArray(Img<? extends RealType<?>>) - Static method in class net.imglib2.util.Util
Returns the pixels of an image of RealType as array of doubles.
asFloatArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
 
asIntArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
 
asLongArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
 
asLongArray(Localizable) - Static method in class net.imglib2.util.Localizables
assertImageEquals(RandomAccessibleInterval<? extends A>, RandomAccessibleInterval<? extends B>) - Static method in class net.imglib2.test.ImgLib2Assert
Throws an AssertionError, if the content or intervals of the two images differ.
assertImageEquals(RandomAccessibleInterval<? extends A>, RandomAccessibleInterval<? extends B>, BiPredicate<A, B>) - Static method in class net.imglib2.test.ImgLib2Assert
Throws an AssertionError, if the content or intervals of the two images differ.
assertImageEqualsIntegerType(RandomAccessibleInterval<? extends IntegerType<?>>, RandomAccessibleInterval<? extends IntegerType<?>>) - Static method in class net.imglib2.test.ImgLib2Assert
Throws an AssertionError, if the content or intervals of the two images differ.
assertImageEqualsRealType(RandomAccessibleInterval<? extends RealType<?>>, RandomAccessibleInterval<? extends RealType<?>>, double) - Static method in class net.imglib2.test.ImgLib2Assert
Throws an AssertionError, if the content or intervals of the two images differ.
assertIntervalEquals(Interval, Interval) - Static method in class net.imglib2.test.ImgLib2Assert
Throws an AssertionError, if the two Intervals differ.
assertIntervalEquals(RealInterval, RealInterval, double) - Static method in class net.imglib2.test.ImgLib2Assert
 
asShortArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
 
asymmetric(double[], int) - Static method in class net.imglib2.algorithm.convolution.kernel.Kernel1D
Creates a one-dimensional asymmetric convolution kernel.
asymmetric(double[][], int[]) - Static method in class net.imglib2.algorithm.convolution.kernel.Kernel1D
Similar to Kernel1D.asymmetric(double[], int) but creates an array of one-dimensional convolution kernels.
ATrinaryFunction - Class in net.imglib2.algorithm.math.abstractions
 
ATrinaryFunction(Object, Object, Object) - Constructor for class net.imglib2.algorithm.math.abstractions.ATrinaryFunction
 
AUnaryFunction - Class in net.imglib2.algorithm.math.abstractions
 
AUnaryFunction(Object) - Constructor for class net.imglib2.algorithm.math.abstractions.AUnaryFunction
 
average(float[]) - Static method in class net.imglib2.util.Util
 
average(double[]) - Static method in class net.imglib2.util.Util
 
averageDouble(List<Double>) - Static method in class net.imglib2.util.Util
 
averageFloat(List<Float>) - Static method in class net.imglib2.util.Util
 
awaitTermination(long, TimeUnit) - Method in class net.imglib2.parallel.ForkJoinExecutorService
 
awaitTermination(long, TimeUnit) - Method in class net.imglib2.parallel.SequentialExecutorService
 
AWTScreenImage - Interface in net.imglib2.display.screenimage.awt
A ScreenImage that produces AWT Image objects.
AWTScreenImageUtil - Class in net.imglib2.display.screenimage.awt
Utility class to create AWTScreenImages.
AWTScreenImageUtil() - Constructor for class net.imglib2.display.screenimage.awt.AWTScreenImageUtil
 
axes - Variable in class net.imglib2.view.HyperSlice
 
axisFromR(double[][], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
compute the axis of rotation from a rotation matrix.

B

b - Variable in class net.imglib2.algorithm.math.abstractions.ABinaryFunction
 
b - Variable in class net.imglib2.algorithm.math.abstractions.ATrinaryFunction
 
b - Variable in class net.imglib2.algorithm.math.execution.Comparison
 
b - Variable in class net.imglib2.type.numeric.ARGBDoubleType
 
b - Variable in class net.imglib2.util.ValuePair
 
b - Variable in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
background - Variable in class net.imglib2.converter.VolatileRealTypeARGBConverter
 
BacktrackingLineSearch - Class in net.imglib2.realtransform.inverse
A generic backtracking line search to iteratively estimate the inverse of a RealTransform.
BacktrackingLineSearch(int) - Constructor for class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
BacktrackingLineSearch(DifferentiableRealTransform) - Constructor for class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
backtrackingLineSearch(double, double, int, double) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
Perform backtracking line search.
backtrackingLineSearch(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
Uses Backtracking Line search to determine a step size.
backtrackingLineSearch(double, double, int, double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
Uses Backtracking Line search to determine a step size.
Bandpass<T extends NumericType<T>> - Class in net.imglib2.algorithm.fft
Deprecated.
use FFT instead
Bandpass(RandomAccessibleInterval<T>, int, int, ImgFactory<T>) - Constructor for class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
Bandpass(Img<T>, int, int) - Constructor for class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
BasePairBitType - Class in net.imglib2.type.label
Representation of base pairs using 3 bits per entry, supported characters: gap, N, A, T, G, C, U Bases are handled using the BasePairBitType.Base enumeration.
BasePairBitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.label.BasePairBitType
 
BasePairBitType(BasePairBitType.Base) - Constructor for class net.imglib2.type.label.BasePairBitType
 
BasePairBitType() - Constructor for class net.imglib2.type.label.BasePairBitType
 
BasePairBitType.Base - Enum in net.imglib2.type.label
 
BasePairCharType - Class in net.imglib2.type.label
Representation of base pairs using one char per entry, supported characters: gap, N, A, T, G, C, U Bases are handled using the BasePairBitType.Base enumeration.
BasePairCharType(NativeImg<?, ? extends CharAccess>) - Constructor for class net.imglib2.type.label.BasePairCharType
 
BasePairCharType(BasePairBitType.Base) - Constructor for class net.imglib2.type.label.BasePairCharType
 
BasePairCharType(char) - Constructor for class net.imglib2.type.label.BasePairCharType
 
BasePairCharType() - Constructor for class net.imglib2.type.label.BasePairCharType
 
BasePairType<T extends BasePairType<T>> - Interface in net.imglib2.type
TODO
baseToValue() - Method in interface net.imglib2.type.BasePairType
 
baseToValue() - Method in class net.imglib2.type.label.BasePairBitType
 
baseToValue() - Method in class net.imglib2.type.label.BasePairCharType
 
bck(int) - Method in class net.imglib2.AbstractWrappedPositionableLocalizable
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
bck(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
bck(int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
bck(int) - Method in class net.imglib2.converter.read.BiConvertedRandomAccess
 
bck(int) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
bck(int) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
bck(int) - Method in class net.imglib2.img.cell.CellRandomAccess
 
bck(int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
bck(int) - Method in class net.imglib2.img.list.ListRandomAccess
 
bck(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
bck(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
bck(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
bck(int) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
 
bck(int) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
bck(int) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
bck(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
bck(int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
bck(int) - Method in class net.imglib2.Point
 
bck(int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
bck(int) - Method in interface net.imglib2.Positionable
Move by -1 in one dimension.
bck(int) - Method in class net.imglib2.RealPoint
 
bck(int) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
bck(int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
bck(int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
bck(int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
bck(int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
bck(int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
bck(int) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
 
bck(int) - Method in class net.imglib2.roi.util.PositionableInterval
 
bck(int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
bck(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
bck(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
bck(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
bck(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
bck(int) - Method in class net.imglib2.view.MixedRandomAccess
 
bck(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
bck(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
bck(int) - Method in class net.imglib2.view.SlicingRandomAccess
 
bck(int) - Method in class net.imglib2.view.StackView.DefaultRA
 
bck(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
bck(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
bck(int) - Method in class net.imglib2.view.TransformRandomAccess
 
bck(int) - Method in class net.imglib2.view.TranslationRandomAccess
 
bckDim0() - Method in class net.imglib2.img.array.ArrayRandomAccess
Moves one step backward in dimension 0
bckDim0() - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
Moves one step backward in dimension 0
beforeMin - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
 
beforeMin - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
Benchmark - Interface in net.imglib2.algorithm
TODO
benchmark(int, Runnable) - Static method in class net.imglib2.util.BenchmarkHelper
Run a benchmark numRuns times and record the milliseconds taken for each run.
BenchmarkAlgorithm - Class in net.imglib2.algorithm
This is a convenience implementation of an algorithm that implements Benchmark and Algorithm so that less code has to be re-implemented.
BenchmarkAlgorithm() - Constructor for class net.imglib2.algorithm.BenchmarkAlgorithm
 
benchmarkAndPrint(int, boolean, Runnable) - Static method in class net.imglib2.util.BenchmarkHelper
Run a benchmark numRuns times and print the results to System.out .
BenchmarkHelper - Class in net.imglib2.util
Tools for setting up basic benchmarks.
BenchmarkHelper() - Constructor for class net.imglib2.util.BenchmarkHelper
 
bestPoint - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
bestPoints - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
bestSquDistance - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
bestSquDistances - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
BiConvertedCursor<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedCursor(Cursor<A>, Cursor<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedCursor
Creates a copy of c for conversion that can be accessed through BiConvertedCursor.get().
BiConvertedCursor(Cursor<A>, Cursor<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedCursor
Creates a copy of c for conversion that can be accessed through BiConvertedCursor.get().
BiConvertedIterableInterval<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedIterableInterval(IterableInterval<A>, IterableInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedIterableInterval
Creates a copy of c for conversion.
BiConvertedIterableInterval(IterableInterval<A>, IterableInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedIterableInterval
Creates a copy of c for conversion.
BiConvertedIterableRealInterval<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedIterableRealInterval(IterableRealInterval<A>, IterableRealInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedIterableRealInterval
Creates a copy of c for conversion.
BiConvertedIterableRealInterval(IterableRealInterval<A>, IterableRealInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedIterableRealInterval
Creates a copy of c for conversion.
BiConvertedRandomAccess<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedRandomAccess(RandomAccess<A>, RandomAccess<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccess
 
BiConvertedRandomAccess(RandomAccess<A>, RandomAccess<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccess
 
BiConvertedRandomAccessible<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedRandomAccessible(RandomAccessible<A>, RandomAccessible<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccessible
 
BiConvertedRandomAccessible(RandomAccessible<A>, RandomAccessible<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccessible
 
BiConvertedRandomAccessibleInterval<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccessibleInterval
 
BiConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccessibleInterval
 
BiConvertedRealCursor<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedRealCursor(RealCursor<A>, RealCursor<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealCursor
Creates a copy of c for conversion that can be accessed through BiConvertedRealCursor.get().
BiConvertedRealCursor(RealCursor<A>, RealCursor<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealCursor
Creates a copy of c for conversion that can be accessed through BiConvertedRealCursor.get().
BiConvertedRealRandomAccess<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedRealRandomAccess(RealRandomAccess<A>, RealRandomAccess<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
BiConvertedRealRandomAccess(RealRandomAccess<A>, RealRandomAccess<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
BiConvertedRealRandomAccessible<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedRealRandomAccessible(RealRandomAccessible<A>, RealRandomAccessible<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccessible
 
BiConvertedRealRandomAccessible(RealRandomAccessible<A>, RealRandomAccessible<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccessible
 
BiConvertedRealRandomAccessibleRealInterval<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedRealRandomAccessibleRealInterval(RealRandomAccessibleRealInterval<A>, RealRandomAccessibleRealInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccessibleRealInterval
 
BiConvertedRealRandomAccessibleRealInterval(RealRandomAccessibleRealInterval<A>, RealRandomAccessibleRealInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccessibleRealInterval
 
BiConverter<A,B,C> - Interface in net.imglib2.converter
This interface would be a TriConsumer if such an interface existed in the JDK.
bigIntegerCollection(IterableInterval<? extends IntegerType<?>>) - Static method in class net.imglib2.util.FlatCollections
Wraps an IntegerType iterable image as a collection.
bigIntegerList(RandomAccessibleInterval<? extends IntegerType<?>>) - Static method in class net.imglib2.util.FlatCollections
Wraps a IntegerType random-accessible image as a list.
BinaryCompositeMaskPredicate<T> - Interface in net.imglib2.roi.composite
A CompositeMaskPredicate with a binary operator and two operands.
BinaryMaskOperator(BinaryOperator<BoundaryType>, Bounds.BinaryBoundsOperator, BinaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.Operators.BinaryMaskOperator
 
BinaryMaskRegionOfInterest<T extends BitType,I extends RandomAccessibleInterval<T>> - Class in net.imglib2.roi
Deprecated.
BinaryMaskRegionOfInterest(I) - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest
Deprecated.
 
BinaryMaskRegionOfInterest.BMROIIterableInterval<TT extends Type<TT>> - Class in net.imglib2.roi
Deprecated.
 
BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor - Class in net.imglib2.roi
Deprecated.
The cursor works by managing a cursor from the original image.
BinaryMaskRegionOfInterest.BMROIIterationOrder - Class in net.imglib2.roi
Deprecated.
 
binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, DistanceTransform.DISTANCE_TYPE, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using squared Euclidian (L2) or L1 distance.
binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, DistanceTransform.DISTANCE_TYPE, ExecutorService, int, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using squared Euclidian (L2) or L1 distance.
binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, RandomAccessibleInterval<V>, DistanceTransform.DISTANCE_TYPE, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using squared Euclidian (L2) or L1 distance.
binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, RandomAccessibleInterval<V>, DistanceTransform.DISTANCE_TYPE, ExecutorService, int, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using squared Euclidian (L2) or L1 distance.
binaryTransform(RandomAccessibleInterval<B>, Distance, ExecutorService, int) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using arbitrary Distance d.
binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, Distance) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using arbitrary Distance d.
binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, Distance, ExecutorService, int) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using arbitrary Distance d.
binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, RandomAccessibleInterval<V>, Distance) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using arbitrary Distance d.
binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, RandomAccessibleInterval<V>, Distance, ExecutorService, int) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using arbitrary Distance d.
BinMapper1d<T> - Interface in net.imglib2.histogram
An interface for defining a bin mapping algorithm.
Binning - Class in net.imglib2.util
Static utility methods to convert from a value to a bin, useful for dealing with histograms and LUTs.
Binning() - Constructor for class net.imglib2.util.Binning
 
bits(long...) - Static method in class net.imglib2.img.array.ArrayImgs
bits(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
bits(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<BitType, LongAccess> using a LongAccess passed as argument.
bits(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
BitType - Class in net.imglib2.type.logic
TODO
BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.logic.BitType
 
BitType(boolean) - Constructor for class net.imglib2.type.logic.BitType
 
BitType(LongAccess) - Constructor for class net.imglib2.type.logic.BitType
 
BitType() - Constructor for class net.imglib2.type.logic.BitType
 
BlackTopHat - Class in net.imglib2.algorithm.morphology
Black top-hat (bottom-hat) transform for ImgLib2.
blackTopHat(Img<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, on a RealType Img using a list of Shapes as a flat structuring element.
blackTopHat(Img<T>, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, using a list of Shapes as a flat structuring element.
blackTopHat(Img<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, on a RealType Img using a Shape as a flat structuring element.
blackTopHat(Img<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, using a Shape as a flat structuring element.
blackTopHat(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation on a RealType source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.
blackTopHat(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation on a source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.
blackTopHat(RandomAccessible<T>, IterableInterval<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation on a RealType source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.
blackTopHat(RandomAccessible<T>, IterableInterval<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation on a source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.
blackTopHatInPlace(RandomAccessible<T>, Interval, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, on a RealType Img using a list of Shapes as a flat structuring element.
blackTopHatInPlace(RandomAccessible<T>, Interval, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, using a list of Shapes as a flat structuring element.
blackTopHatInPlace(RandomAccessible<T>, Interval, Shape, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, on a RealType Img using a Shape as a flat structuring element.
blackTopHatInPlace(RandomAccessible<T>, Interval, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, using a Shape as a flat structuring element.
block(RandomAccessible<T>, long[]) - Static method in class net.imglib2.algorithm.math.ImgMath
 
block(RandomAccessible<T>, long) - Static method in class net.imglib2.algorithm.math.ImgMath
 
block(RandomAccessible<T>, long[][]) - Static method in class net.imglib2.algorithm.math.ImgMath
 
BlockingFetchQueues<E> - Class in net.imglib2.cache.queue
TODO revise javadoc Queueing structure (intended for cache entries to be fetched).
BlockingFetchQueues(int, int) - Constructor for class net.imglib2.cache.queue.BlockingFetchQueues
 
BlockingFetchQueues(int, int, int) - Constructor for class net.imglib2.cache.queue.BlockingFetchQueues
 
BlockReadingDirect<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
BlockReadingDirect(O, RandomAccessible<O>, long[][], byte[]) - Constructor for class net.imglib2.algorithm.math.execution.BlockReadingDirect
 
BlockReadingSource<I extends RealType<I>,O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
BlockReadingSource(O, Converter<RealType<?>, O>, RandomAccessible<I>, long[][], byte[]) - Constructor for class net.imglib2.algorithm.math.execution.BlockReadingSource
 
BlockReadSource<I extends RealType<I>> - Class in net.imglib2.algorithm.math
Intended for reading cuboid blocks out of an integral image.
BlockReadSource(RandomAccessible<I>, long[]) - Constructor for class net.imglib2.algorithm.math.BlockReadSource
A block centered on a particular pixel.
BlockReadSource(RandomAccessible<I>, long) - Constructor for class net.imglib2.algorithm.math.BlockReadSource
A block centered on a particular pixel.
BlockReadSource(RandomAccessible<I>, long[][]) - Constructor for class net.imglib2.algorithm.math.BlockReadSource
 
blockSize - Variable in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BLUE - Static variable in interface net.imglib2.display.ColorTable
 
blue(int) - Static method in class net.imglib2.type.numeric.ARGBLongAccessType
 
blue(int) - Static method in class net.imglib2.type.numeric.ARGBType
 
BMROICursor() - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor
Deprecated.
 
BMROIIterableInterval(RandomAccess<TT>) - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
BMROIIterationOrder() - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterationOrder
Deprecated.
 
BOOLEAN(Function<NativeImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeTypeFactory
 
BooleanAccess - Interface in net.imglib2.img.basictypeaccess
TODO
BooleanArray - Class in net.imglib2.img.basictypeaccess.array
 
BooleanArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.BooleanArray
 
BooleanArray(boolean[]) - Constructor for class net.imglib2.img.basictypeaccess.array.BooleanArray
 
booleanCollection(IterableInterval<? extends BooleanType<?>>) - Static method in class net.imglib2.util.FlatCollections
Wraps a BooleanType iterable image as a collection.
booleanList(RandomAccessibleInterval<? extends BooleanType<?>>) - Static method in class net.imglib2.util.FlatCollections
Wraps a BooleanType random-accessible image as a list.
BooleanNtree - Class in net.imglib2.img.sparse
BitAccess based on a Ntree.
BooleanNtree(long[], long[], boolean) - Constructor for class net.imglib2.img.sparse.BooleanNtree
 
booleans(long...) - Static method in class net.imglib2.img.array.ArrayImgs
booleans(boolean[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<NativeBoolType, BooleanArray> reusing a passed byte[] array.
booleans(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<NativeBoolType, BooleanAccess> using a BooleanAccess passed as argument.
booleans(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
BooleanType<T extends BooleanType<T>> - Interface in net.imglib2.type
TODO
BoolType - Class in net.imglib2.type.logic
A BooleanType wrapping a single primitive boolean variable.
BoolType() - Constructor for class net.imglib2.type.logic.BoolType
 
BoolType(boolean) - Constructor for class net.imglib2.type.logic.BoolType
 
BoolType(T) - Constructor for class net.imglib2.type.logic.BoolType
 
boundary - Variable in class net.imglib2.outofbounds.OutOfBoundsMirrorFactory
 
Boundary<T extends BooleanType<T>> - Class in net.imglib2.roi.boundary
An IterableRegion of the boundary pixels of a source boolean RandomAccessibleInterval.
Boundary(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.boundary.Boundary
 
Boundary(RandomAccessibleInterval<T>, Boundary.StructuringElement) - Constructor for class net.imglib2.roi.boundary.Boundary
 
Boundary.StructuringElement - Enum in net.imglib2.roi.boundary
 
BoundaryRandomAccess4<T extends BooleanType<T>> - Class in net.imglib2.roi.boundary
BoundaryRandomAccess4(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.boundary.BoundaryRandomAccess4
 
BoundaryRandomAccess8<T extends BooleanType<T>> - Class in net.imglib2.roi.boundary
BoundaryRandomAccess8(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.boundary.BoundaryRandomAccess8
 
BoundaryType - Enum in net.imglib2.roi
Defines the edge behavior of the Mask.
boundaryType() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
 
boundaryType() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
 
boundaryType() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
 
boundaryType() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
 
boundaryType() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask
 
boundaryType() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
 
boundaryType() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
 
boundaryType() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
 
boundaryType() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
 
boundaryType() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
 
boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritableBox
 
boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritableEllipsoid
 
boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritablePolygon2D
 
boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritableSphere
 
boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritableSuperEllipsoid
 
boundaryType() - Method in interface net.imglib2.roi.geom.real.Line
 
boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritableBox
 
boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritableEllipsoid
 
boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritablePolygon2D
 
boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritableSphere
 
boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritableSuperEllipsoid
 
boundaryType() - Method in interface net.imglib2.roi.geom.real.PointMask
 
boundaryType() - Method in interface net.imglib2.roi.geom.real.Polyline
 
boundaryType() - Method in interface net.imglib2.roi.geom.real.RealPointCollection
 
boundaryType() - Method in class net.imglib2.roi.mask.integer.DefaultMask
 
boundaryType() - Method in class net.imglib2.roi.mask.integer.DefaultMaskInterval
 
boundaryType() - Method in class net.imglib2.roi.mask.real.DefaultRealMask
 
boundaryType() - Method in class net.imglib2.roi.mask.real.DefaultRealMaskRealInterval
 
boundaryType() - Method in interface net.imglib2.roi.MaskPredicate
Returns the boundary behavior of this Mask.
Bounded - Interface in net.imglib2.outofbounds
Interface implemented by entities (Samplers, Positionables, Localizables) that can tell whether they are currently located outside of the image boundaries.
BoundedSoftRefLoaderCache<K,V> - Class in net.imglib2.cache.ref
A cache that forwards to some other cache (usually WeakRefLoaderCache) and additionally keeps SoftReferences to the N most recently accessed values.
BoundedSoftRefLoaderCache(int, LoaderCache<K, V>) - Constructor for class net.imglib2.cache.ref.BoundedSoftRefLoaderCache
 
BoundedSoftRefLoaderCache(int) - Constructor for class net.imglib2.cache.ref.BoundedSoftRefLoaderCache
 
BoundingBox - Class in net.imglib2.labeling
Deprecated.
BoundingBox(int) - Constructor for class net.imglib2.labeling.BoundingBox
Deprecated.
 
BoundingBox - Class in net.imglib2.roi.labeling
A bounding box Interval around a region that is build by aggregating positions contained in the region.
BoundingBox(int) - Constructor for class net.imglib2.roi.labeling.BoundingBox
 
BoundingBox - Class in net.imglib2.transform.integer
TODO
BoundingBox(int) - Constructor for class net.imglib2.transform.integer.BoundingBox
 
BoundingBox(long[], long[]) - Constructor for class net.imglib2.transform.integer.BoundingBox
 
BoundingBox(Interval) - Constructor for class net.imglib2.transform.integer.BoundingBox
 
boundingBox - Variable in class net.imglib2.view.TransformBuilder
Interval transformed to the currently visited view.
BoundingBoxTransform - Interface in net.imglib2.transform.integer
Implemented by Transforms that can transform (easily) a BoundingBox in the source space to a bounding box in the target space.
Bounds<I extends RealInterval,B extends Bounds<I,B>> - Class in net.imglib2.roi
Operations on mask bounds.
Bounds(I) - Constructor for class net.imglib2.roi.Bounds
 
Bounds.AbstractAdaptingInterval - Class in net.imglib2.roi
Abstract base class which adapts to changes in source interval, leaving Interval.min(int) and Interval.max(int) methods to be implemented by derived classes.
Bounds.AbstractAdaptingRealInterval - Class in net.imglib2.roi
Abstract base class for bounds which adapt to changes in the source interval, leaving RealInterval.realMin(int) and RealInterval.realMax(int) methods to be implemented by derived classes.
Bounds.BinaryBoundsOperator - Interface in net.imglib2.roi
 
Bounds.IntBounds - Class in net.imglib2.roi
Implement Bounds for integer intervals.
Bounds.IntersectionInterval - Class in net.imglib2.roi
The intersection of two intervals.
Bounds.IntersectionRealInterval - Class in net.imglib2.roi
The intersection of two intervals.
Bounds.RealBounds - Class in net.imglib2.roi
Implement Bounds for real intervals.
Bounds.RealTransformRealInterval - Class in net.imglib2.roi
The Bounds for a transformed source.
Bounds.SmallestContainingInterval - Class in net.imglib2.roi
Represents the smallest Interval completely containing a specified RealInterval.
Bounds.UnaryBoundsOperator - Interface in net.imglib2.roi
 
Bounds.UnionInterval - Class in net.imglib2.roi
The union of two intervals.
Bounds.UnionRealInterval - Class in net.imglib2.roi
The union of two intervals.
Box - Interface in net.imglib2.roi.geom.real
A RealMaskRealInterval which defines an n-d box, cuboid, hyperrectangle, etc.
Branchpoints - Class in net.imglib2.algorithm.morphology.table2d
Removes all pixels except those that are the branchpoints of a skeleton.
Branchpoints() - Constructor for class net.imglib2.algorithm.morphology.table2d.Branchpoints
 
branchpoints(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Branchpoints
 
branchpoints(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Branchpoints
 
bresenham(List<? extends RealLocalizable>) - Static method in class net.imglib2.roi.geom.GeomMaths
 
BresenhamLine<T> - Class in net.imglib2.algorithm.region
n-Dimension Bresenham line (http://en.wikipedia.org/wiki/Bresenham%27s_line_algorithm") : an iterator that iterates all the pixels between two points.
BresenhamLine(RandomAccessible<T>) - Constructor for class net.imglib2.algorithm.region.BresenhamLine
 
BresenhamLine(RandomAccessible<T>, Localizable, Localizable) - Constructor for class net.imglib2.algorithm.region.BresenhamLine
 
BresenhamLine(RandomAccess<T>, Localizable, Localizable) - Constructor for class net.imglib2.algorithm.region.BresenhamLine
 
Bridge - Class in net.imglib2.algorithm.morphology.table2d
Sets a pixel to 1 if it has two non-zero neighbors that are on opposite sides of this pixel.
Bridge() - Constructor for class net.imglib2.algorithm.morphology.table2d.Bridge
 
bridge(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Bridge
 
bridge(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Bridge
 
BrightToDark() - Constructor for class net.imglib2.algorithm.componenttree.BuildComponentTree.BrightToDark
 
BSplineCoefficientsInterpolator<T extends RealType<T>> - Interface in net.imglib2.algorithm.bspline
Performs b-spline interpolation for order up to and including 5.
BSplineCoefficientsInterpolatorEven<T extends RealType<T>> - Class in net.imglib2.algorithm.bspline
Computes b-spline coefficients for splines of even order.
BSplineCoefficientsInterpolatorEven(int, RandomAccessible<T>, T) - Constructor for class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorEven
 
BSplineCoefficientsInterpolatorFactory<T extends RealType<T>,S extends RealType<S>> - Class in net.imglib2.algorithm.interpolation.randomaccess
 
BSplineCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean, ImgFactory<S>, OutOfBoundsFactory<? extends RealType<?>, ?>) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
Creates a new BSplineCoefficientsInterpolatorFactory using the BSpline interpolation in a certain window
BSplineCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean, S) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int, boolean, S) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int, boolean) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFactory(RandomAccessibleInterval<S>, int, boolean, OutOfBoundsFactory<? extends RealType<?>, ?>) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFunction<T extends RealType<T>> - Class in net.imglib2.algorithm.bspline
Performs b-spline interpolation using pre-computed coefficients.
BSplineCoefficientsInterpolatorFunction(int, RandomAccess<Neighborhood<T>>, RealLocalizable, T) - Constructor for class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorFunction
 
BSplineCoefficientsInterpolatorFunction(int, RandomAccess<Neighborhood<T>>, RealLocalizable, T, boolean) - Constructor for class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorFunction
 
BSplineCoefficientsInterpolatorOdd<T extends RealType<T>> - Class in net.imglib2.algorithm.bspline
Computes b-spline coefficients for splines of odd order.
BSplineCoefficientsInterpolatorOdd(int, RandomAccessible<T>, T) - Constructor for class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorOdd
 
BSplineDecomposition<T extends RealType<T>,S extends RealType<S>> - Class in net.imglib2.algorithm.bspline
Compute Bspline coefficients from an image.
BSplineDecomposition(int, RandomAccessible<T>) - Constructor for class net.imglib2.algorithm.bspline.BSplineDecomposition
 
BSplineDecomposition(RandomAccessible<T>) - Constructor for class net.imglib2.algorithm.bspline.BSplineDecomposition
 
BSplineInterpolator<T extends RealType<T>> - Class in net.imglib2.algorithm.interpolation.randomaccess
Performs cubic b-spline interpolation by pre-computing coefficients on the fly.
BSplineInterpolator(BSplineInterpolator<T>) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
BSplineInterpolator(RandomAccessible<T>, int, boolean) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
BSplineInterpolator(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
Build a default cubic-bspline interpolator.
BSplineInterpolatorFactory<T extends RealType<T>> - Class in net.imglib2.algorithm.interpolation.randomaccess
 
BSplineInterpolatorFactory(boolean, int) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolatorFactory
Creates a new BSplineInterpolatorFactory using the BSpline interpolation in a certain window
BSplineInterpolatorFactory(boolean) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolatorFactory
Creates a new BSplineInterpolatorFactory using the BSpline interpolation in a certain window
BSplineInterpolatorFactory(int) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolatorFactory
Creates a new BSplineInterpolatorFactory using the BSpline interpolation in a certain window
BSplineInterpolatorFactory() - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolatorFactory
Creates a new BSplineInterpolatorFactory with standard parameters (third-order, with clipping)
BsplineKernel0 - Class in net.imglib2.algorithm.bspline
A zeroth-order Bspline kernel Trivial, but included for completeness.
BsplineKernel0() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel0
 
BsplineKernel1 - Class in net.imglib2.algorithm.bspline
A first-order Bspline kernel Trivial, but included for completeness.
BsplineKernel1() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel1
 
BsplineKernel2 - Class in net.imglib2.algorithm.bspline
A second-order Bspline kernel
BsplineKernel2() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel2
 
BsplineKernel3 - Class in net.imglib2.algorithm.bspline
A third-order Bspline kernel
BsplineKernel3() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel3
 
BsplineKernel4 - Class in net.imglib2.algorithm.bspline
A fourth-order Bspline kernel
BsplineKernel4() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel4
 
BsplineKernel5 - Class in net.imglib2.algorithm.bspline
A fifth-order Bspline kernel
BsplineKernel5() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel5
 
BSplineLazyCoefficientsInterpolatorFactory<T extends RealType<T>,S extends RealType<S> & NativeType<S>> - Class in net.imglib2.algorithm.bspline
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean, S, int[], OutOfBoundsFactory<? extends RealType<?>, ?>) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean, S, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, int, boolean, S, int[], OutOfBoundsFactory<? extends RealType<?>, ?>) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, int, boolean, S, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int, boolean, S, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int, boolean, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory.LazyCellImgFactory<T extends RealType<T>,S extends RealType<S> & NativeType<S>> - Class in net.imglib2.algorithm.bspline
Returns an image of coefficients that is lazily evaluated and cached.
bsplineOrder - Variable in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorEven
 
bsplineOrder - Variable in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorOdd
 
BufferedRectangularNeighborhood<T extends Type<T>> - Class in net.imglib2.algorithm.region.localneighborhood
 
BufferedRectangularNeighborhood(RandomAccessibleInterval<T>, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, long[]) - Constructor for class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhood
 
BufferedRectangularNeighborhood(int, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, long[]) - Constructor for class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhood
 
BufferedRectangularNeighborhoodCursor<T extends Type<T>> - Class in net.imglib2.algorithm.region.localneighborhood
 
BufferedRectangularNeighborhoodCursor(BufferedRectangularNeighborhood<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
BufferedRectangularNeighborhoodCursor(BufferedRectangularNeighborhoodCursor<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
build(int, RandomAccessible<S>, S) - Static method in interface net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolator
 
build(Function<S, T>, Function<T, S>) - Static method in interface net.imglib2.cache.util.KeyBimap
 
build() - Method in class net.imglib2.view.TransformBuilder
Create a sequence of wrapped RandomAccessibles from the TransformBuilder.transforms list.
BuildComponentTree<T extends Type<T>,C extends PartialComponent<T,C>> - Class in net.imglib2.algorithm.componenttree
Build the component tree of an image.
buildComponentTree(RandomAccessibleInterval<T>, PartialComponent.Generator<T, C>, PartialComponent.Handler<C>, Comparator<T>) - Static method in class net.imglib2.algorithm.componenttree.BuildComponentTree
Run the algorithm.
buildComponentTree(RandomAccessibleInterval<T>, PartialComponent.Generator<T, C>, PartialComponent.Handler<C>, boolean) - Static method in class net.imglib2.algorithm.componenttree.BuildComponentTree
Run the algorithm.
buildComponentTree(RandomAccessibleInterval<T>, T, boolean) - Static method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree
Build a component tree from an input image.
buildComponentTree(RandomAccessibleInterval<T>, T, ImgFactory<LongType>, boolean) - Static method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree
Build a component tree from an input image.
buildComponentTree(RandomAccessibleInterval<T>, T, Comparator<T>) - Static method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree
Build a component tree from an input image.
buildComponentTree(RandomAccessibleInterval<T>, T, Comparator<T>, ImgFactory<LongType>) - Static method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree
Build a component tree from an input image.
BuildComponentTree.BrightToDark<T extends Comparable<T>> - Class in net.imglib2.algorithm.componenttree
Default comparator for Comparable pixel values for bright-to-dark pass.
BuildComponentTree.DarkToBright<T extends Comparable<T>> - Class in net.imglib2.algorithm.componenttree
Default comparator for Comparable pixel values for dark-to-bright pass.
buildIterableInterval() - Method in class net.imglib2.view.iteration.IterableTransformBuilder
Create an IterableInterval on the Interval specified in the constructor of the RandomAccessible specified in the constructor.
buildMserTree(RandomAccessibleInterval<T>, double, long, long, double, double, boolean) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree
Build a MSER tree from an input image.
buildMserTree(RandomAccessibleInterval<T>, T, long, long, double, double, boolean) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree
Build a MSER tree from an input image.
buildMserTree(RandomAccessibleInterval<T>, T, long, long, double, double, ImgFactory<LongType>, boolean) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree
Build a MSER tree from an input image.
buildMserTree(RandomAccessibleInterval<T>, ComputeDelta<T>, long, long, double, double, T, Comparator<T>) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree
Build a MSER tree from an input image.
buildMserTree(RandomAccessibleInterval<T>, ComputeDelta<T>, long, long, double, double, ImgFactory<LongType>, T, Comparator<T>) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree
Build a MSER tree from an input image.
BYTE(Function<NativeLongAccessImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeLongAccessTypeFactory
 
BYTE(Function<NativeImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeTypeFactory
 
ByteAccess - Interface in net.imglib2.img.basictypeaccess
TODO
ByteAccessProxy<T extends GenericByteType<T>> - Class in net.imglib2.img.io.proxyaccess
Proxy access over any GenericByteType container.
ByteAccessProxy(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.img.io.proxyaccess.ByteAccessProxy
 
ByteArray - Class in net.imglib2.img.basictypeaccess.array
 
ByteArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.ByteArray
 
ByteArray(byte[]) - Constructor for class net.imglib2.img.basictypeaccess.array.ByteArray
 
byteArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
ByteArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.ByteArrayType
 
ByteAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<ByteType, ByteArray>.
ByteAWTScreenImage(ArrayImg<ByteType, ByteArray>) - Constructor for class net.imglib2.display.screenimage.awt.ByteAWTScreenImage
 
ByteAWTScreenImage(ByteType, ByteArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.ByteAWTScreenImage
 
ByteImagePlus<T extends NativeType<T>> - Class in net.imglib2.img.imageplus
ImagePlusImg for byte-stored data.
ByteImagePlus(long[], Fraction) - Constructor for class net.imglib2.img.imageplus.ByteImagePlus
 
ByteImagePlus(ImagePlus) - Constructor for class net.imglib2.img.imageplus.ByteImagePlus
 
ByteLongAccess - Interface in net.imglib2.img.basictypelongaccess
TODO
ByteLongAccessType - Class in net.imglib2.type.numeric.integer
 
ByteLongAccessType(NativeLongAccessImg<?, ? extends ByteLongAccess>) - Constructor for class net.imglib2.type.numeric.integer.ByteLongAccessType
 
ByteLongAccessType(byte) - Constructor for class net.imglib2.type.numeric.integer.ByteLongAccessType
 
ByteLongAccessType(ByteLongAccess) - Constructor for class net.imglib2.type.numeric.integer.ByteLongAccessType
 
ByteLongAccessType() - Constructor for class net.imglib2.type.numeric.integer.ByteLongAccessType
 
ByteLongAccessTypeByteTypeConverter - Class in net.imglib2.converter.readwrite.longaccess
 
ByteLongAccessTypeByteTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.ByteLongAccessTypeByteTypeConverter
 
ByteLongAccessTypeByteTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess
 
ByteNtree - Class in net.imglib2.img.sparse
ByteAccess based on a Ntree.
ByteNtree(long[], long[], byte) - Constructor for class net.imglib2.img.sparse.ByteNtree
 
bytes(long...) - Static method in class net.imglib2.img.array.ArrayImgs
bytes(byte[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ByteType, ByteArray> reusing a passed byte[] array.
bytes(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ByteType, ByteAccess> using a ByteAccess passed as argument.
bytes(long...) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs
bytes(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
bytes(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
bytes(ByteLongAccess, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
Creates an UnsafeImg<ByteLongAccessType, ByteArray> reusing a passed byte[] array.
bytes - Variable in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
ByteType - Class in net.imglib2.type.numeric.integer
TODO
ByteType(NativeImg<?, ? extends ByteAccess>) - Constructor for class net.imglib2.type.numeric.integer.ByteType
 
ByteType(byte) - Constructor for class net.imglib2.type.numeric.integer.ByteType
 
ByteType(ByteAccess) - Constructor for class net.imglib2.type.numeric.integer.ByteType
 
ByteType() - Constructor for class net.imglib2.type.numeric.integer.ByteType
 
ByteUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe
 
ByteUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe
 
ByteUnsafe(long, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe
 
ByteUnsafe(long, Object) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe
 
ByteUnsafe(long, Object, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe
 

C

c - Variable in class net.imglib2.algorithm.math.abstractions.ATrinaryFunction
 
c0() - Method in class net.imglib2.algorithm.bspline.AbstractBsplineKernel
 
c0() - Method in class net.imglib2.algorithm.bspline.BsplineKernel0
 
c0() - Method in class net.imglib2.algorithm.bspline.BsplineKernel1
 
c0() - Method in class net.imglib2.algorithm.bspline.BsplineKernel2
 
c0() - Method in class net.imglib2.algorithm.bspline.BsplineKernel3
 
c0() - Method in class net.imglib2.algorithm.bspline.BsplineKernel4
 
c0() - Method in class net.imglib2.algorithm.bspline.BsplineKernel5
 
cache(RandomAccessibleInterval<T>, int...) - Static method in interface net.imglib2.algorithm.lazy.Caches
Cache a RandomAccessibleInterval of the typical NativeType implementations in a memory cell image with volatile cells.
Cache<K,V> - Interface in net.imglib2.cache
 
cache - Variable in class net.imglib2.cache.util.AbstractCacheKeyAdapter
 
cache(T) - Method in class net.imglib2.img.ImgFactory
Deprecated.
CacheAsUncheckedCacheAdapter<K,V> - Class in net.imglib2.cache.util
Wraps a Cache<K,V> as an UncheckedCache<K,V>.
CacheAsUncheckedCacheAdapter(Cache<K, V>) - Constructor for class net.imglib2.cache.util.CacheAsUncheckedCacheAdapter
 
cached_first_element - Variable in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
CachedCellImg<T extends NativeType<T>,A> - Class in net.imglib2.cache.img
A LazyCellImg that creates empty Cells lazily when they are accessed and stores (modified) Cells in a disk cache when memory runs full.
CachedCellImg(CellGrid, Fraction, Cache<Long, Cell<A>>, A) - Constructor for class net.imglib2.cache.img.CachedCellImg
 
CachedCellImg(CellGrid, T, Cache<Long, Cell<A>>, A) - Constructor for class net.imglib2.cache.img.CachedCellImg
 
cacheDirectory(Path) - Method in interface net.imglib2.cache.img.optional.DiskCacheOptions
Set the path of the cell cache directory.
cacheDirectory() - Method in interface net.imglib2.cache.img.optional.DiskCacheOptions.Val
 
CacheHints - Class in net.imglib2.cache.volatiles
Hints to a cache on how to handle data requests.
CacheHints(LoadingStrategy, int, boolean) - Constructor for class net.imglib2.cache.volatiles.CacheHints
 
CacheIoTiming - Class in net.imglib2.cache.iotiming
Utilities for per ThreadGroup measuring and budgeting of time spent in (blocking) IO.
CacheKeyAdapter<K,L,V,C extends Cache<L,V>> - Class in net.imglib2.cache.util
 
CacheKeyAdapter(C, KeyBimap<K, L>) - Constructor for class net.imglib2.cache.util.CacheKeyAdapter
 
CacheLoader<K,V> - Interface in net.imglib2.cache
 
CacheOptions<T> - Interface in net.imglib2.cache.img.optional
Optional arguments that specify the in memory-cache to use.
CacheOptions.CacheType - Enum in net.imglib2.cache.img.optional
Rough in-memory cache types.
CacheOptions.Val - Interface in net.imglib2.cache.img.optional
 
CacheRemover<K,V,D> - Interface in net.imglib2.cache
Handles entries that are removed from a cache (by propagating to a higher-level cache, writing to disk, or similar).
Caches - Interface in net.imglib2.algorithm.lazy
A simple method to cache an arbitrary a RandomAccessibleInterval of the typical NativeType implementations in a memory cell image with volatile cells.
Caches - Class in net.imglib2.cache.util
 
Caches() - Constructor for class net.imglib2.cache.util.Caches
 
Caches.RandomAccessibleLoader<T extends NativeType<T>> - Class in net.imglib2.algorithm.lazy
A simple CellLoader implementation that fills a pre-allocated cell with data from a RandomAccessible source at the same coordinates.
cacheType(CacheOptions.CacheType) - Method in interface net.imglib2.cache.img.optional.CacheOptions
Which in-memory cache type to use.
cacheType() - Method in interface net.imglib2.cache.img.optional.CacheOptions.Val
 
calculate(Img<T>) - Method in class net.imglib2.algorithm.morphology.table2d.Abstract3x3TableOperation
 
calculate(RandomAccessible<T>, IterableInterval<T>) - Method in class net.imglib2.algorithm.morphology.table2d.Abstract3x3TableOperation
 
calculateEigenValues(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, EigenValues<T, U>) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateEigenValues(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, EigenValues<T, U>, int, ExecutorService) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateEigenValuesSquare(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateEigenValuesSquare(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, int, ExecutorService) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateEigenValuesSymmetric(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateEigenValuesSymmetric(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, int, ExecutorService) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<U>, RandomAccessibleInterval<U>, RandomAccessibleInterval<U>, OutOfBoundsFactory<U, ? super RandomAccessibleInterval<U>>, double...) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, OutOfBoundsFactory<T, ? super RandomAccessibleInterval<T>>) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<T>) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<U>, RandomAccessibleInterval<U>, RandomAccessibleInterval<U>, OutOfBoundsFactory<U, ? super RandomAccessibleInterval<U>>, int, ExecutorService, double...) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, OutOfBoundsFactory<T, ? super RandomAccessibleInterval<T>>, int, ExecutorService) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<T>, int, ExecutorService) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
CalibrationUtils - Class in net.imglib2.img.display.imagej
 
CalibrationUtils() - Constructor for class net.imglib2.img.display.imagej.CalibrationUtils
 
call() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
canFuseColor(ImgPlus<? extends RealType<?>>) - Static method in class net.imglib2.img.display.imagej.ImgPlusViews
Indicates it ImgPlusViews.fuseColor(ImgPlus) can by used.
canMoveOutside - Variable in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
Cast - Class in net.imglib2.util
Utility class for type casts.
Cell<A> - Class in net.imglib2.img.cell
A cell of an AbstractCellImg.
Cell(int[], long[], A) - Constructor for class net.imglib2.img.cell.Cell
 
CellCursor<T extends NativeType<T>,C extends Cell<?>> - Class in net.imglib2.img.cell
CellCursor(CellCursor<T, C>) - Constructor for class net.imglib2.img.cell.CellCursor
 
CellCursor(AbstractCellImg<T, ?, C, ?>) - Constructor for class net.imglib2.img.cell.CellCursor
 
cellDimension(int) - Method in class net.imglib2.img.cell.CellGrid
Get the number of pixels in a standard cell in a given dimension d.
cellDimensions(int...) - Method in interface net.imglib2.cache.img.optional.CellDimensionsOptions
Set the dimensions of a cell.
cellDimensions() - Method in interface net.imglib2.cache.img.optional.CellDimensionsOptions.Val
 
cellDimensions(int[]) - Method in class net.imglib2.img.cell.CellGrid
Write the number of pixels in a standard cell in each dimension into long[].
CellDimensionsOptions<T> - Interface in net.imglib2.cache.img.optional
Optional arguments that specify the dimensions of a Cell.
CellDimensionsOptions.Val - Interface in net.imglib2.cache.img.optional
 
cellDims - Variable in class net.imglib2.img.cell.CellRandomAccess
 
CellGrid - Class in net.imglib2.img.cell
Defines AbstractCellImg geometry and translates between image, cell, and grid coordinates.
CellGrid(long[], int[]) - Constructor for class net.imglib2.img.cell.CellGrid
 
CellGrid(CellGrid) - Constructor for class net.imglib2.img.cell.CellGrid
 
CellImg<T extends NativeType<T>,A> - Class in net.imglib2.img.cell
 
CellImg(CellImgFactory<T>, CellGrid, ListImg<Cell<A>>, Fraction) - Constructor for class net.imglib2.img.cell.CellImg
 
CellImgFactory<T extends NativeType<T>> - Class in net.imglib2.img.cell
Factory for creating CellImgs.
CellImgFactory(T) - Constructor for class net.imglib2.img.cell.CellImgFactory
 
CellImgFactory(T, int...) - Constructor for class net.imglib2.img.cell.CellImgFactory
 
CellImgFactory() - Constructor for class net.imglib2.img.cell.CellImgFactory
Deprecated.
CellImgFactory(int...) - Constructor for class net.imglib2.img.cell.CellImgFactory
Deprecated.
CellImgToVirtualStack - Class in net.imglib2.img.display.imagej
Utility class to convert a CellImg (and SCIFIOCellImg, CachedCellImg) to ImagePlus.
CellImgToVirtualStack() - Constructor for class net.imglib2.img.display.imagej.CellImgToVirtualStack
 
CellIterationOrder - Class in net.imglib2.img.cell
Iteration order for a CellImg.
CellIterationOrder(AbstractCellImg<?, ?, ?, ?>) - Constructor for class net.imglib2.img.cell.CellIterationOrder
 
CellLoader<T extends NativeType<T>> - Interface in net.imglib2.cache.img
Populates cells with data.
CellLocalizingCursor<T extends NativeType<T>,C extends Cell<?>> - Class in net.imglib2.img.cell
Localizing Cursor on a AbstractCellImg.
CellLocalizingCursor(CellLocalizingCursor<T, C>) - Constructor for class net.imglib2.img.cell.CellLocalizingCursor
 
CellLocalizingCursor(AbstractCellImg<T, ?, C, ?>) - Constructor for class net.imglib2.img.cell.CellLocalizingCursor
 
CellRandomAccess<T extends NativeType<T>,C extends Cell<?>> - Class in net.imglib2.img.cell
CellRandomAccess(CellRandomAccess<T, C>) - Constructor for class net.imglib2.img.cell.CellRandomAccess
 
CellRandomAccess(AbstractCellImg<T, ?, C, ?>) - Constructor for class net.imglib2.img.cell.CellRandomAccess
 
cells - Variable in class net.imglib2.img.cell.AbstractCellImg
 
center - Variable in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
center - Variable in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
The pixel coordinates of the center of this regions.
center() - Method in class net.imglib2.roi.geom.real.AbstractWritableBox
 
center - Variable in class net.imglib2.roi.geom.real.AbstractWritableSphere
 
center() - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
Returns the center.
center - Variable in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
 
center() - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
Returns the center.
center() - Method in interface net.imglib2.roi.geom.real.Box
Returns the center of the Box.
center() - Method in interface net.imglib2.roi.geom.real.SuperEllipsoid
Returns the center of the superellipsoid
center() - Method in interface net.imglib2.roi.geom.real.WritableBox
 
center() - Method in interface net.imglib2.roi.geom.real.WritableSuperEllipsoid
 
CenteredRectangleShape - Class in net.imglib2.algorithm.neighborhood
A factory for Accessibles on rectangular neighborhoods.
CenteredRectangleShape(int[], boolean) - Constructor for class net.imglib2.algorithm.neighborhood.CenteredRectangleShape
Constructs a factory for symmetric, non-isotropic rectangle neighborhoods.
centerValuesPerBin(int, double, double) - Static method in class net.imglib2.util.Binning
Returns array of center values for each bin.
centralAsymmetric(double...) - Static method in class net.imglib2.algorithm.convolution.kernel.Kernel1D
Creates a one-dimensional asymmetric convolution kernel, where the origin of the kernel is in the middle.
centralAsymmetric(double[][]) - Static method in class net.imglib2.algorithm.convolution.kernel.Kernel1D
Similar to Kernel1D.centralAsymmetric(double...) but creates an array of one-dimensional convolution kernels.
ChannelARGBConverter - Class in net.imglib2.converter
Convert UnsignedByteType into one channel of ARGBType.
ChannelARGBConverter(ChannelARGBConverter.Channel) - Constructor for class net.imglib2.converter.ChannelARGBConverter
 
ChannelARGBConverter.Channel - Enum in net.imglib2.converter
 
channelCount() - Method in enum net.imglib2.converter.ColorChannelOrder
 
channels - Variable in class net.imglib2.img.imageplus.ImagePlusImg
 
CHAR(Function<NativeLongAccessImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeLongAccessTypeFactory
 
CHAR(Function<NativeImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeTypeFactory
 
CharAccess - Interface in net.imglib2.img.basictypeaccess
TODO
CharArray - Class in net.imglib2.img.basictypeaccess.array
 
CharArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.CharArray
 
CharArray(char[]) - Constructor for class net.imglib2.img.basictypeaccess.array.CharArray
 
charArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
CharArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.CharArrayType
 
CharLongAccess - Interface in net.imglib2.img.basictypelongaccess
TODO
CharNtree - Class in net.imglib2.img.sparse
CharAccess based on a Ntree.
CharNtree(long[], long[], char) - Constructor for class net.imglib2.img.sparse.CharNtree
 
CharUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe
 
CharUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.CharUnsafe
 
CharUnsafe(long, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.CharUnsafe
 
CharUnsafe(long, Object) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.CharUnsafe
 
CharUnsafe(long, Object, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.CharUnsafe
 
check(C, Neighborhood<T>) - Method in interface net.imglib2.algorithm.localextrema.LocalExtrema.LocalNeighborhoodCheck
Determine whether a pixel is a local extremum.
check(C, Neighborhood<T>) - Method in class net.imglib2.algorithm.localextrema.LocalExtrema.MaximumCheck
 
check(C, Neighborhood<T>) - Method in class net.imglib2.algorithm.localextrema.LocalExtrema.MinimumCheck
 
checkBijectivity(int[]) - Static method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
checkDimensions(Object...) - Static method in class net.imglib2.roi.Operators
Checks that all args have same dimensionality.
checkInput() - Method in interface net.imglib2.algorithm.Algorithm
 
checkInput() - Method in class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
checkInput() - Method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
checkInput() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
checkInput() - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
checkInput() - Method in class net.imglib2.algorithm.floydsteinberg.FloydSteinbergDithering
 
checkInput() - Method in class net.imglib2.algorithm.integral.IntegralImg
 
checkInput() - Method in class net.imglib2.algorithm.integral.ScaleAreaAveraging2d
 
checkInput() - Method in class net.imglib2.algorithm.labeling.Watershed
 
checkInput() - Method in class net.imglib2.algorithm.localization.PeakFitter
 
checkInput() - Method in class net.imglib2.algorithm.math.PickImagePeaks
 
checkInput() - Method in class net.imglib2.algorithm.pde.CoherenceEnhancingDiffusionTensor2D
 
checkInput() - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
 
checkInput() - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme2D
 
checkInput() - Method in class net.imglib2.algorithm.pde.Gradient
 
checkInput() - Method in class net.imglib2.algorithm.pde.IsotropicDiffusionTensor
 
checkInput() - Method in class net.imglib2.algorithm.pde.MomentOfInertiaTensor2D
 
checkInput() - Method in class net.imglib2.algorithm.pde.MomentOfInertiaTensor3D
 
checkInput() - Method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
 
checkInput() - Method in class net.imglib2.algorithm.stats.ComputeMinMax
 
checkInput() - Method in class net.imglib2.algorithm.stats.Histogram
 
checkInput() - Method in class net.imglib2.algorithm.transformation.ImageTransform
 
checkInterval(Interval, int[]) - Static method in class net.imglib2.transform.integer.permutation.PermutationTransform
Test whether a given lut can be applied to an interval.
checkOutOfBounds() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
checkOutOfBounds() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
checkOutOfBounds() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
children() - Method in interface net.imglib2.algorithm.math.abstractions.OFunction
 
children() - Method in class net.imglib2.algorithm.math.execution.Addition
 
children() - Method in class net.imglib2.algorithm.math.execution.BlockReadingSource
 
children() - Method in class net.imglib2.algorithm.math.execution.Comparison
 
children() - Method in class net.imglib2.algorithm.math.execution.Division
 
children() - Method in class net.imglib2.algorithm.math.execution.Exponential
 
children() - Method in class net.imglib2.algorithm.math.execution.IfStatement
 
children() - Method in class net.imglib2.algorithm.math.execution.IfStatementBoolean
 
children() - Method in class net.imglib2.algorithm.math.execution.ImgSourceIterable
 
children() - Method in class net.imglib2.algorithm.math.execution.ImgSourceIterableDirect
 
children() - Method in class net.imglib2.algorithm.math.execution.KDTreeRadiusSource
 
children() - Method in class net.imglib2.algorithm.math.execution.LetBinding
 
children() - Method in class net.imglib2.algorithm.math.execution.Logarithm
 
children() - Method in class net.imglib2.algorithm.math.execution.LogicalNot
 
children() - Method in class net.imglib2.algorithm.math.execution.Maximum
 
children() - Method in class net.imglib2.algorithm.math.execution.Minimum
 
children() - Method in class net.imglib2.algorithm.math.execution.Multiplication
 
children() - Method in class net.imglib2.algorithm.math.execution.NumericSource
 
children() - Method in class net.imglib2.algorithm.math.execution.Power
 
children() - Method in class net.imglib2.algorithm.math.execution.Printing
 
children() - Method in class net.imglib2.algorithm.math.execution.RandomAccessibleOffsetSource
 
children() - Method in class net.imglib2.algorithm.math.execution.Subtraction
 
children() - Method in class net.imglib2.algorithm.math.execution.Variable
 
children() - Method in class net.imglib2.algorithm.math.execution.ZeroMinus
 
chiSquared(double[][], double[], double[], FitFunction) - Static method in class net.imglib2.algorithm.localization.LevenbergMarquardtSolver
Calculate the current sum-squared-error
Chunk - Class in net.imglib2.multithreading
Deprecated.
Chunk(long, long) - Constructor for class net.imglib2.multithreading.Chunk
Deprecated.
 
chunkInterval(Interval, int) - Static method in class net.imglib2.loops.IntervalChunks
Returns a list of disjoint intervals, that covers the given interval.
Ci - Variable in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
CircleCursor<T> - Class in net.imglib2.algorithm.region
Iterates over a Bresenham 2D circle using the mid-point algorithm.
CircleCursor(RandomAccessible<T>, Localizable, long) - Constructor for class net.imglib2.algorithm.region.CircleCursor
Iterates over a Bresenham circle in the target RandomAccessible.
CircleCursor(RandomAccessible<T>, Localizable, long, int, int) - Constructor for class net.imglib2.algorithm.region.CircleCursor
Iterates over a Bresenham circle in the target RandomAccessible.
Circles - Class in net.imglib2.algorithm.region
Write circles in an image using the midpoint algorithm.
ClampingNLinearInterpolatorFactory<T extends NumericType<T>> - Class in net.imglib2.interpolation.randomaccess
Provides clamping n-linear interpolators for volatile and non-volatile types.
ClampingNLinearInterpolatorFactory() - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorFactory
 
ClampingNLinearInterpolatorRealType<T extends RealType<T>> - Class in net.imglib2.interpolation.randomaccess
N-linear interpolator for RealType values with overflow check.
ClampingNLinearInterpolatorRealType(ClampingNLinearInterpolatorRealType<T>) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorRealType
 
ClampingNLinearInterpolatorRealType(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorRealType
 
ClampingNLinearInterpolatorRealType(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorRealType
 
ClampingNLinearInterpolatorVolatileARGB<T extends AbstractVolatileNumericType<ARGBType,T>> - Class in net.imglib2.interpolation.randomaccess
N-linear interpolator for volatile ARGB values with overflow check.
ClampingNLinearInterpolatorVolatileARGB(ClampingNLinearInterpolatorVolatileARGB<T>) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
 
ClampingNLinearInterpolatorVolatileARGB(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
 
ClampingNLinearInterpolatorVolatileARGB(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
 
ClampingNLinearInterpolatorVolatileRealType<R extends RealType<R>,T extends AbstractVolatileRealType<R,T>> - Class in net.imglib2.interpolation.randomaccess
N-linear interpolator for RealType values with overflow check.
ClampingNLinearInterpolatorVolatileRealType(ClampingNLinearInterpolatorVolatileRealType<R, T>) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType
 
ClampingNLinearInterpolatorVolatileRealType(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType
 
ClampingNLinearInterpolatorVolatileRealType(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType
 
clampMax - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorRealType
 
clampMax - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType
 
clampMin - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorRealType
 
clampMin - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType
 
ClassCopyProvider<T> - Class in net.imglib2.loops
Helper to create multiple copies of a class.
ClassCopyProvider(Class<? extends T>, Class<T>, Class<?>...) - Constructor for class net.imglib2.loops.ClassCopyProvider
Create a ClassCopyProvider to make copy a a given class.
Clean - Class in net.imglib2.algorithm.morphology.table2d
Removes isolated pixels.
Clean() - Constructor for class net.imglib2.algorithm.morphology.table2d.Clean
 
clean(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Clean
 
clean(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Clean
 
cleanUp() - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderCache
Remove entries from the cache whose references have been garbage-collected.
cleanUp() - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderRemoverCache
Remove entries from the cache whose references have been garbage-collected.
cleanUp() - Method in class net.imglib2.cache.ref.SoftRefLoaderCache
Remove entries from the cache whose references have been garbage-collected.
cleanUp() - Method in class net.imglib2.cache.ref.SoftRefLoaderRemoverCache
Remove entries from the cache whose references have been garbage-collected.
cleanUp() - Method in class net.imglib2.cache.ref.WeakRefLoaderCache
Remove entries from the cache whose references have been garbage-collected.
cleanUp() - Method in class net.imglib2.cache.ref.WeakRefVolatileCache
Remove entries from the cache whose references have been garbage-collected.
cleanUp() - Method in class net.imglib2.cache.ref.WeakRefVolatileLoaderCache
Remove entries from the cache whose references have been garbage-collected.
clear() - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelList
empty the list.
clear() - Static method in class net.imglib2.algorithm.util.Singleton
Clear all named singletons.
clear() - Method in class net.imglib2.cache.iotiming.IoTimeBudget
Set the budget to 0 (for all levels).
clear() - Method in class net.imglib2.cache.queue.BlockingFetchQueues
Atomically removes all of the elements from this queue.
clear() - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
clear() - Method in class net.imglib2.roi.labeling.LabelingType
 
clearToPrefetch() - Method in class net.imglib2.cache.queue.BlockingFetchQueues
Atomically removes all of the elements from this queue.
clip(ConvexPolytope) - Method in class net.imglib2.algorithm.kdtree.ClipConvexPolytopeKDTree
 
clip(double[][]) - Method in class net.imglib2.algorithm.kdtree.ClipConvexPolytopeKDTree
 
clip - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
ClipConvexPolytopeKDTree<T> - Class in net.imglib2.algorithm.kdtree
Partition nodes in a KDTree into disjoint sets of nodes that are inside and outside a given convex polytope, respectively.
ClipConvexPolytopeKDTree(KDTree<T>) - Constructor for class net.imglib2.algorithm.kdtree.ClipConvexPolytopeKDTree
 
ClippedTransitionRealTransform - Class in net.imglib2.realtransform
A RealTransform that transitions between two n-dimensional RealTransforms.
ClippedTransitionRealTransform(RealTransform, RealTransform, double, double) - Constructor for class net.imglib2.realtransform.ClippedTransitionRealTransform
 
clipping - Variable in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
clipping - Variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
clipping - Variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
clone() - Method in class net.imglib2.algorithm.util.unionfind.IntArrayUnionFind
 
clone() - Method in class net.imglib2.algorithm.util.unionfind.LongHashMapUnionFind
 
clone() - Method in class net.imglib2.util.Fraction
 
close(Img<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a RealType Img, using a list of Shapes as a structuring element.
close(Img<T>, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on an Img of Comparable , using a list of Shapes as a structuring element.
close(Img<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a RealType Img, using a Shape as a structuring element.
close(Img<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on an Img of Comparable , using a Shape as a structuring element.
close(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a RealType source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.
close(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.
close(RandomAccessible<T>, IterableInterval<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a RealType source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.
close(RandomAccessible<T>, IterableInterval<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.
close() - Method in class net.imglib2.img.imageplus.ByteImagePlus
 
close() - Method in class net.imglib2.img.imageplus.FloatImagePlus
 
close() - Method in class net.imglib2.img.imageplus.ImagePlusImg
Free resources.
close() - Method in class net.imglib2.img.imageplus.IntImagePlus
 
close() - Method in class net.imglib2.img.imageplus.ShortImagePlus
 
close() - Method in class net.imglib2.parallel.DefaultTaskExecutor
 
close() - Method in interface net.imglib2.parallel.TaskExecutor
 
close() - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
close() - Method in interface net.imglib2.roi.GeneralPathSegmentHandler
Deprecated.
 
closedBox(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritableBox with closed boundaries.
closedEllipsoid(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMasks
closedPolygon2D(List<? extends RealLocalizable>) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritablePolygon2D from a list of vertices, with closed boundaries.
closedPolygon2D(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritablePolygon2D from a list of (x, y) coordinates, with closed boundaries.
closedSphere(double[], double) - Static method in class net.imglib2.roi.geom.GeomMasks
closedSuperEllipsoid(double[], double[], double) - Static method in class net.imglib2.roi.geom.GeomMasks
ClosedWritableBox - Class in net.imglib2.roi.geom.real
A Box which contains all edge points defined by the min and max values in each dimension.
ClosedWritableBox(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.ClosedWritableBox
Creates an n-d rectangular RealMask in real space.
ClosedWritableEllipsoid - Class in net.imglib2.roi.geom.real
A Ellipsoid which does not contain any edge points, defined by a center and semi-axis lengths.
ClosedWritableEllipsoid(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.ClosedWritableEllipsoid
Creates an n-d ellipsoid, where n is determined by the length of the smaller array.
ClosedWritablePolygon2D - Class in net.imglib2.roi.geom.real
A Polygon2D which contains all boundary points, and is defined by the provided vertices.
ClosedWritablePolygon2D(List<? extends RealLocalizable>) - Constructor for class net.imglib2.roi.geom.real.ClosedWritablePolygon2D
 
ClosedWritablePolygon2D(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.ClosedWritablePolygon2D
 
ClosedWritableSphere - Class in net.imglib2.roi.geom.real
A Sphere which contains all boundary points.
ClosedWritableSphere(double[], double) - Constructor for class net.imglib2.roi.geom.real.ClosedWritableSphere
Creates an n-d sphere.
ClosedWritableSuperEllipsoid - Class in net.imglib2.roi.geom.real
A SuperEllipsoid which contains all edge points.
ClosedWritableSuperEllipsoid(double[], double[], double) - Constructor for class net.imglib2.roi.geom.real.ClosedWritableSuperEllipsoid
Creates an n-d super ellipsoid, where n is determined by the length of the smaller array
closeInPlace(RandomAccessibleInterval<T>, Interval, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the closing morphological operation, on a source RandomAccessibleInterval using a list of Shapes as a flat structuring element.
closeInPlace(RandomAccessibleInterval<T>, Interval, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the closing morphological operation, on a RandomAccessibleInterval using a list of Shapes as a flat structuring element.
closeInPlace(RandomAccessibleInterval<T>, Interval, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the closing morphological operation, on a RealType RandomAccessibleInterval using a Shape as a flat structuring element.
closeInPlace(RandomAccessibleInterval<T>, Interval, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the closing morphological operation, on a RandomAccessibleInterval using a Shape as a flat structuring element.
Closing - Class in net.imglib2.algorithm.morphology
 
code - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
Index into weights array.
coefficientAccess - Variable in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
coefficients - Variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
coefficientStorage - Variable in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
coefficientType - Variable in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
CoherenceEnhancingDiffusionTensor2D<T extends RealType<T>> - Class in net.imglib2.algorithm.pde
 
CoherenceEnhancingDiffusionTensor2D(Img<T>) - Constructor for class net.imglib2.algorithm.pde.CoherenceEnhancingDiffusionTensor2D
 
collapse(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T> into an ( n-1)-dimensional RandomAccessibleInterval< GenericComposite<T>>
collapse(RandomAccessible<T>) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessible<T> into an (n -1)-dimensional RandomAccessible<GenericComposite <T>>
collapseNumeric(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T extends NumericType<T>> into an (n-1)-dimensional RandomAccessibleInterval<NumericComposite<T>>
collapseNumeric(RandomAccessible<T>, int) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessible<T extends NumericType <T>> into an (n-1)-dimensional RandomAccessible <NumericComposite<T>>
collapseReal(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T extends RealType<T>> into an (n-1)-dimensional RandomAccessibleInterval<RealComposite<T>>
collapseReal(RandomAccessible<T>, int) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessible<T extends RealType <T>> into an (n-1)-dimensional RandomAccessible <RealComposite<T>>
collectAllContainedIntervals(long[], int[]) - Static method in class net.imglib2.algorithm.util.Grids
Get all blocks of size blockSize contained within an interval specified by dimensions and their positions within a cell grid.
collectAllContainedIntervals(long[], long[], int[]) - Static method in class net.imglib2.algorithm.util.Grids
Get all blocks of size blockSize contained within an interval specified by min, max and their positions within a cell grid.
collectAllContainedIntervalsWithGridPositions(long[], int[]) - Static method in class net.imglib2.algorithm.util.Grids
Get all blocks of size blockSize contained within an interval specified by dimensions and their positions within a cell grid.
collectAllContainedIntervalsWithGridPositions(long[], long[], int[]) - Static method in class net.imglib2.algorithm.util.Grids
Get all blocks of size blockSize contained within an interval specified by min, max and their positions within a cell grid.
collectAllOffsets(long[], int[]) - Static method in class net.imglib2.algorithm.util.Grids
Get all blocks of size blockSize contained within an interval specified by dimensions.
collectAllOffsets(long[], int[], Function<long[], T>) - Static method in class net.imglib2.algorithm.util.Grids
Get all blocks of size blockSize contained within an interval specified by dimensions.
collectAllOffsets(long[], long[], int[]) - Static method in class net.imglib2.algorithm.util.Grids
Get all blocks of size blockSize contained within an interval specified by min and max.
collectAllOffsets(long[], long[], int[], Function<long[], T>) - Static method in class net.imglib2.algorithm.util.Grids
Get all blocks of size blockSize contained within an interval specified by min and max.
collection(IterableInterval<T>, Function<T, E>) - Static method in class net.imglib2.util.FlatCollections
ColorChannelOrder - Enum in net.imglib2.converter
 
ColorTable - Interface in net.imglib2.display
 
ColorTable16 - Class in net.imglib2.display
16-bit color lookup table.
ColorTable16() - Constructor for class net.imglib2.display.ColorTable16
Initializes a 16-bit color table with a linear grayscale ramp.
ColorTable16(short[]...) - Constructor for class net.imglib2.display.ColorTable16
Initializes a 16-bit color table with the given table values.
ColorTable8 - Class in net.imglib2.display
8-bit color lookup table.
ColorTable8() - Constructor for class net.imglib2.display.ColorTable8
Initializes an 8-bit color table with a linear grayscale ramp.
ColorTable8(byte[]...) - Constructor for class net.imglib2.display.ColorTable8
Initializes an 8-bit color table with the given table values.
cols(double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
 
combineHash(int, int) - Static method in class net.imglib2.util.Util
 
compare(T, T) - Method in class net.imglib2.algorithm.componenttree.BuildComponentTree.BrightToDark
 
compare(T, T) - Method in class net.imglib2.algorithm.componenttree.BuildComponentTree.DarkToBright
 
Compare - Class in net.imglib2.algorithm.math.abstractions
 
Compare(Object, Object) - Constructor for class net.imglib2.algorithm.math.abstractions.Compare
 
compare(O, O) - Method in class net.imglib2.algorithm.math.execution.Comparison
 
compare(O, O) - Method in class net.imglib2.algorithm.math.execution.Equality
 
compare(O, O) - Method in class net.imglib2.algorithm.math.execution.IsGreaterThan
 
compare(O, O) - Method in class net.imglib2.algorithm.math.execution.IsLessThan
 
compare(O, O) - Method in class net.imglib2.algorithm.math.execution.LogicalAnd
 
compare(O, O) - Method in class net.imglib2.algorithm.math.execution.LogicalOr
 
compare(O, O) - Method in class net.imglib2.algorithm.math.execution.LogicalXor
 
compare(O, O) - Method in class net.imglib2.algorithm.math.execution.NotEquality
 
compare(L, L) - Method in class net.imglib2.KDTree.DimComparator
 
compare(long, long) - Static method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
compare(long, long) - Static method in class net.imglib2.type.numeric.integer.UnsignedLongType
Deprecated.
compareTo(Watershed.PixelIntensity<U>) - Method in class net.imglib2.algorithm.labeling.Watershed.PixelIntensity
 
compareTo(BasePairBitType) - Method in class net.imglib2.type.label.BasePairBitType
 
compareTo(BasePairCharType) - Method in class net.imglib2.type.label.BasePairCharType
 
compareTo(BitType) - Method in class net.imglib2.type.logic.BitType
 
compareTo(BoolType) - Method in class net.imglib2.type.logic.BoolType
 
compareTo(NativeBoolType) - Method in class net.imglib2.type.logic.NativeBoolType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
compareTo(LongLongAccessType) - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
compareTo(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
compareTo(UnsignedByteLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
compareTo(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
compareTo(UnsignedIntLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
compareTo(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
compareTo(UnsignedLongLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
compareTo(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
compareTo(UnsignedShortLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
compareTo(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
compareTo(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
compareTo(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
compareTo(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
compareTo(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
Comparison<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
Comparison(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.Comparison
 
compatible_iteration_order - Variable in class net.imglib2.algorithm.math.Compute.Parameters
 
compatibleIterationOrder(List<RandomAccessibleInterval<?>>) - Static method in class net.imglib2.algorithm.math.abstractions.Util
Check for compatibility among the iteration order of the images, and throws a RuntimeException When images have different dimensions.
complement() - Method in interface net.imglib2.type.BasePairType
 
complement() - Method in class net.imglib2.type.label.BasePairBitType
 
complement() - Method in class net.imglib2.type.label.BasePairCharType
 
complexConjugate(RandomAccessibleInterval<T>) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
 
complexConjugate() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
complexConjugate() - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
complexConjugate() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
complexConjugate() - Method in interface net.imglib2.type.numeric.ComplexType
 
complexConjugate() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
complexConjugate() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
complexConjugate() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
ComplexDoubleLongAccessType - Class in net.imglib2.type.numeric.complex
 
ComplexDoubleLongAccessType(NativeLongAccessImg<?, ? extends DoubleLongAccess>) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
ComplexDoubleLongAccessType(double, double) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
ComplexDoubleLongAccessType(DoubleLongAccess) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
ComplexDoubleLongAccessType() - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
ComplexDoubleLongAccessTypeComplexDoubleTypeConverter - Class in net.imglib2.converter.readwrite.longaccess
 
ComplexDoubleLongAccessTypeComplexDoubleTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.ComplexDoubleLongAccessTypeComplexDoubleTypeConverter
 
ComplexDoubleLongAccessTypeComplexDoubleTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess
 
complexDoubles(long...) - Static method in class net.imglib2.img.array.ArrayImgs
complexDoubles(double[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<DoubleType, DoubleArray> reusing a passed double[] array.
complexDoubles(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ComplexDoubleType, DoubleAccess> using a DoubleAccess passed as argument.
complexDoubles(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
complexDoubles(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
complexDoubles(DoubleLongAccess, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
Creates an UnsafeImg<DoubleType, DoubleArray> reusing a passed double[] array.
ComplexDoubleType - Class in net.imglib2.type.numeric.complex
TODO
ComplexDoubleType(NativeImg<?, ? extends DoubleAccess>) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
 
ComplexDoubleType(double, double) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
 
ComplexDoubleType(DoubleAccess) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
 
ComplexDoubleType() - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
 
ComplexFloatLongAccessType - Class in net.imglib2.type.numeric.complex
 
ComplexFloatLongAccessType(NativeLongAccessImg<?, ? extends FloatLongAccess>) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
ComplexFloatLongAccessType(float, float) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
ComplexFloatLongAccessType(FloatLongAccess) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
ComplexFloatLongAccessType() - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
ComplexFloatLongAccessTypeComplexFloatTypeConverter - Class in net.imglib2.converter.readwrite.longaccess
 
ComplexFloatLongAccessTypeComplexFloatTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.ComplexFloatLongAccessTypeComplexFloatTypeConverter
 
ComplexFloatLongAccessTypeComplexFloatTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess
 
complexFloats(long...) - Static method in class net.imglib2.img.array.ArrayImgs
complexFloats(float[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<FloatType, FloatArray> reusing a passed float[] array.
complexFloats(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ComplexFloatType, FloatAccess> using a FloatAccess passed as argument.
complexFloats(long...) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs
complexFloats(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
complexFloats(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
complexFloats(FloatLongAccess, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
Creates an UnsafeImg<FloatType, FloatArray> reusing a passed float[] array.
ComplexFloatType - Class in net.imglib2.type.numeric.complex
TODO
ComplexFloatType(NativeImg<?, ? extends FloatAccess>) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
 
ComplexFloatType(float, float) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
 
ComplexFloatType(FloatAccess) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
 
ComplexFloatType() - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
 
ComplexImaginaryFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
Returns the imaginary value of a complex value
ComplexImaginaryFloatConverter() - Constructor for class net.imglib2.converter.ComplexImaginaryFloatConverter
 
ComplexPhaseFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
Computes the phase spectrum for a complex value
ComplexPhaseFloatConverter() - Constructor for class net.imglib2.converter.ComplexPhaseFloatConverter
 
ComplexPowerFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
Computes the power spectrum for a complex value
ComplexPowerFloatConverter() - Constructor for class net.imglib2.converter.ComplexPowerFloatConverter
 
ComplexPowerGLogFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
Computes the generalized log of the power spectrum for a complex value
ComplexPowerGLogFloatConverter() - Constructor for class net.imglib2.converter.ComplexPowerGLogFloatConverter
 
ComplexRealFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
Returns the real value for of complex value
ComplexRealFloatConverter() - Constructor for class net.imglib2.converter.ComplexRealFloatConverter
 
complexToComplex(RandomAccessibleInterval<C>, int, boolean) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-complex forward or inverse FFT transform of an n-dimensional dataset in a certain dimension.
complexToComplex(RandomAccessibleInterval<C>, int, boolean, boolean) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-complex forward or inverse FFT transform of an n-dimensional dataset in a certain dimension.
complexToComplex(RandomAccessibleInterval<C>, int, boolean, boolean, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-complex forward or inverse FFT transform of an n-dimensional dataset in a certain dimension.
complexToComplexForward(RandomAccessibleInterval<C>) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToComplexForward(RandomAccessibleInterval<C>, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToComplexForward(RandomAccessibleInterval<C>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToComplexInverse(RandomAccessibleInterval<C>) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToComplexInverse(RandomAccessibleInterval<C>, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToComplexInverse(RandomAccessibleInterval<C>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, ImgFactory<R>, R) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, ImgFactory<R>, R, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, ImgFactory<R>, R, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, Interval, ImgFactory<R>, R) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, Interval, ImgFactory<R>, R, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, Interval, ImgFactory<R>, R, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, ImgFactory<R>, R) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, ImgFactory<R>, R, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, ImgFactory<R>, R, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, Interval, ImgFactory<R>, R) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, Interval, ImgFactory<R>, R, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, Interval, ImgFactory<R>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, Interval, ImgFactory<R>, R, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, Interval, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, Interval, int, boolean) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, int, boolean, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, Interval, int, boolean, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, int, boolean, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, Interval, int, boolean, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToRealUnpad(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToRealUnpad(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToRealUnpad(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
ComplexType<T extends ComplexType<T>> - Interface in net.imglib2.type.numeric
TODO
Component<T,C extends Component<T,C>> - Interface in net.imglib2.algorithm.componenttree
Represents a connected component and a node in a ComponentTree.
component - Variable in class net.imglib2.transform.integer.ComponentMappingTransform
for each component of the target vector: from which source vector component should it be taken.
component - Variable in class net.imglib2.transform.integer.MixedTransform
for each component of the target vector (before translation).
component - Variable in class net.imglib2.transform.integer.SlicingTransform
specifies for each component of the target vector from which source vector component should it be taken.
ComponentForest<C extends Component<?,C>> - Interface in net.imglib2.algorithm.componenttree
A component forest.
ComponentMapping - Interface in net.imglib2.transform.integer
Map the components of the source vector to obtain the target vector, for instance transform (x,y,z) to (x,z,y).
ComponentMappingTransform - Class in net.imglib2.transform.integer
Map the components of the source vector to obtain the target vector, for instance transform (x,y,z) to (x,z,y).
ComponentMappingTransform(int) - Constructor for class net.imglib2.transform.integer.ComponentMappingTransform
 
ComponentMappingTransform(int[]) - Constructor for class net.imglib2.transform.integer.ComponentMappingTransform
 
ComponentTree<C extends Component<?,C>> - Interface in net.imglib2.algorithm.componenttree
A component tree.
compose(List<RandomAccessibleInterval<A>>, Converter<Composite<A>, B>, B) - Static method in class net.imglib2.converter.Converters
Compose a list of same Interval and same Type A RandomAccessibleIntervals into a RandomAccessibleInterval of some target Type B using a Converter from Composite of A to B.
compose(List<RandomAccessibleInterval<A>>, Converter<Composite<A>, B>, Supplier<B>) - Static method in class net.imglib2.converter.Converters
Compose a list of same Interval and same Type A RandomAccessibleIntervals into a RandomAccessibleInterval of some target Type B using a Converter from Composite of A to B.
composeNumeric(List<RandomAccessibleInterval<A>>, Converter<NumericComposite<A>, B>, B) - Static method in class net.imglib2.converter.Converters
Compose a list of same Interval and same NumericType A RandomAccessibleIntervals into a RandomAccessibleInterval of some target Type B using a Converter from Composite of A to B.
composeNumeric(List<RandomAccessibleInterval<A>>, Converter<NumericComposite<A>, B>, Supplier<B>) - Static method in class net.imglib2.converter.Converters
Compose a list of same Interval and same NumericType A RandomAccessibleIntervals into a RandomAccessibleInterval of some target Type B using a Converter from Composite of A to B.
composeReal(List<RandomAccessibleInterval<A>>, Converter<RealComposite<A>, B>, B) - Static method in class net.imglib2.converter.Converters
Compose a list of same Interval and same RealType A RandomAccessibleIntervals into a RandomAccessibleInterval of some target Type B using a Converter from Composite of A to B.
composeReal(List<RandomAccessibleInterval<A>>, Converter<RealComposite<A>, B>, Supplier<B>) - Static method in class net.imglib2.converter.Converters
Compose a list of same Interval and same RealType A RandomAccessibleIntervals into a RandomAccessibleInterval of some target Type B using a Converter from Composite of A to B.
Composite<T> - Interface in net.imglib2.view.composite
A Composite is a vector of scalars T.
composite - Variable in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
CompositeARGBSamplerConverter - Class in net.imglib2.converter.readwrite
 
CompositeARGBSamplerConverter(ColorChannelOrder) - Constructor for class net.imglib2.converter.readwrite.CompositeARGBSamplerConverter
 
CompositeChannelConverter<T extends Type<T>,A extends Composite<T>> - Class in net.imglib2.converter
A converter to extract one channel of a Composite.
CompositeChannelConverter(long) - Constructor for class net.imglib2.converter.CompositeChannelConverter
 
CompositeFactory<T,C extends Composite<T>> - Interface in net.imglib2.view.composite
A factory to create a Composite vector of scalars T given a RandomAccess.
compositeFactory - Variable in class net.imglib2.view.composite.CompositeView
 
CompositeIntervalView<T,C extends Composite<T>> - Class in net.imglib2.view.composite
CompositeIntervalView(RandomAccessibleInterval<T>, CompositeFactory<T, C>) - Constructor for class net.imglib2.view.composite.CompositeIntervalView
 
CompositeMaskPredicate<T> - Interface in net.imglib2.roi.composite
A composite MaskPredicate that knows the operator and operands that are used to create it.
CompositeRandomAccess() - Constructor for class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
CompositeRandomAccess(CompositeView<T, C>.CompositeRandomAccess) - Constructor for class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
CompositeRegionOfInterest - Class in net.imglib2.roi
Deprecated. 
CompositeRegionOfInterest(int) - Constructor for class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
Initialize an empty composite region of interest.
CompositeRegionOfInterest(RegionOfInterest) - Constructor for class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
Initialize a composite region of interest with a single ROI
CompositeRegionOfInterest(Collection<RegionOfInterest>) - Constructor for class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
 
CompositeView<T,C extends Composite<T>> - Class in net.imglib2.view.composite
CompositeView collapses the trailing dimension of a RandomAccessible of T into a Composite of T.
CompositeView(RandomAccessible<T>, CompositeFactory<T, C>) - Constructor for class net.imglib2.view.composite.CompositeView
 
CompositeView.CompositeRandomAccess - Class in net.imglib2.view.composite
 
CompositeXYProjector<A> - Class in net.imglib2.display.projector.composite
Creates a composite image from across multiple dimensional positions along an axis (typically, but not necessarily, channels).
CompositeXYProjector(RandomAccessibleInterval<A>, IterableInterval<ARGBType>, ArrayList<Converter<A, ARGBType>>, int) - Constructor for class net.imglib2.display.projector.composite.CompositeXYProjector
 
CompositeXYRandomAccessibleProjector<A> - Class in net.imglib2.display.projector.composite
Creates a composite image from across multiple dimensional positions along an axis (typically, but not necessarily, channels).
CompositeXYRandomAccessibleProjector(RandomAccessibleInterval<A>, RandomAccessibleInterval<ARGBType>, ArrayList<Converter<A, ARGBType>>, int) - Constructor for class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
compute(S, T, U) - Method in interface net.imglib2.algorithm.function.Function
Perform an operation with inputs S and T and output U.
compute(A, A, A) - Method in class net.imglib2.algorithm.function.SubtractNorm
 
compute(A, B, C) - Method in class net.imglib2.algorithm.function.SubtractNormReal
 
compute(A, B, C) - Method in class net.imglib2.algorithm.function.SubtractReal
 
compute(Composite<T>, Composite<U>) - Method in interface net.imglib2.algorithm.linalg.eigen.EigenValues
 
compute(Composite<T>, Composite<U>) - Method in class net.imglib2.algorithm.linalg.eigen.EigenValues1D
 
compute(Composite<T>, Composite<U>) - Method in class net.imglib2.algorithm.linalg.eigen.EigenValues2DSquare
 
compute(Composite<T>, Composite<U>) - Method in class net.imglib2.algorithm.linalg.eigen.EigenValues2DSymmetric
 
compute(Composite<T>, Composite<U>) - Method in class net.imglib2.algorithm.linalg.eigen.EigenValuesSquare
 
compute(Composite<T>, Composite<U>) - Method in class net.imglib2.algorithm.linalg.eigen.EigenValuesSymmetric
 
Compute - Class in net.imglib2.algorithm.math
 
Compute(IFunction) - Constructor for class net.imglib2.algorithm.math.Compute
Validate the {code operation}.
compute(IFunction) - Static method in class net.imglib2.algorithm.math.ImgMath
 
compute(RandomAccessibleInterval<I>) - Static method in class net.imglib2.algorithm.math.ImgMath
 
compute(long, long, T, T) - Method in class net.imglib2.algorithm.stats.ComputeMinMax
 
Compute.Parameters - Class in net.imglib2.algorithm.math
 
computeConvolution(Img<ComplexFloatType>, Img<ComplexFloatType>, RandomAccessibleInterval<R>, boolean, boolean, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTConvolution
 
ComputeDelta<T> - Interface in net.imglib2.algorithm.componenttree.mser
For a given threshold value compute the threshold value delta steps down the component tree.
ComputeDeltaBrightToDark<T extends NumericType<T>> - Class in net.imglib2.algorithm.componenttree.mser
Default implementation of ComputeDelta for bright-to-dark pass for NumericType.
ComputeDeltaDarkToBright<T extends NumericType<T>> - Class in net.imglib2.algorithm.componenttree.mser
Default implementation of ComputeDelta for dark-to-bright pass for NumericType.
computeFFT(RandomAccessibleInterval<T>, ImgFactory<S>, S, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, int[], int[], int, boolean) - Static method in class net.imglib2.algorithm.fft.FFTFunctions
Deprecated.
 
computeImgFFT(Interval, RandomAccessible<R>, ImgFactory<ComplexFloatType>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTConvolution
 
computeInto(IFunction, RandomAccessibleInterval<O>) - Static method in class net.imglib2.algorithm.math.ImgMath
 
computeInto(IFunction, RandomAccessibleInterval<O>, Converter<RealType<?>, O>) - Static method in class net.imglib2.algorithm.math.ImgMath
 
computeIntoArrayImg(IFunction) - Static method in class net.imglib2.algorithm.math.ImgMath
 
computeIntoFloats(IFunction) - Static method in class net.imglib2.algorithm.math.ImgMath
 
computeIntoImg(IFunction) - Static method in class net.imglib2.algorithm.math.ImgMath
 
computeInverseFFT(RandomAccessibleInterval<S>, ImgFactory<T>, T, int, boolean, boolean, int[], int[], float) - Static method in class net.imglib2.algorithm.fft.FFTFunctions
Deprecated.
 
computeKernel() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
Compute the Gaussian Kernel for all dimensions
computeKernelFFT(Interval, long[], long[], boolean, RandomAccessible<R>, ImgFactory<ComplexFloatType>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTConvolution
 
computeMinIsotropicSigma(double, double, double[]) - Static method in class net.imglib2.algorithm.dog.DifferenceOfGaussian
Helper function to compute the minimum sigma that can be given to DifferenceOfGaussian.computeSigmas(double, double, double[], double, double) while still achieving isotropic smoothed images.
ComputeMinMax<T extends Type<T> & Comparable<T>> - Class in net.imglib2.algorithm.stats
TODO
ComputeMinMax(IterableInterval<T>, T, T) - Constructor for class net.imglib2.algorithm.stats.ComputeMinMax
 
computeMinMax(RandomAccessibleInterval<T>, T, T) - Static method in class net.imglib2.algorithm.stats.ComputeMinMax
Computes minimal and maximal value in a given interval
computeSigmas(double, double, double[], double, double) - Static method in class net.imglib2.algorithm.dog.DifferenceOfGaussian
Helper function to compute per-dimension sigmas in pixel coordinates.
computeSize() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
Compute the number of elements for iteration
computeSize() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
Compute the number of elements for iteration
computeSize() - Method in class net.imglib2.algorithm.region.localneighborhood.HyperSphereNeighborhoodGPL
Deprecated.
Compute the number of elements for iteration
computeStatistics() - Method in class net.imglib2.labeling.DefaultROIStrategy
Deprecated.
Compute all statistics on the labels if cache is dirty.
computeTargetImageDimensionsAndOffset(Interval, Shape) - Static method in class net.imglib2.algorithm.morphology.MorphologyUtils
Static util to compute the final image dimensions and required offset when performing a full dilation with the specified strel.
computeType - Variable in class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
 
computeWeight(double) - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
 
concat(Convolution<T>...) - Static method in interface net.imglib2.algorithm.convolution.Convolution
Concatenate multiple Convolutions to one convolution.
concat(List<? extends Convolution<T>>) - Static method in interface net.imglib2.algorithm.convolution.Convolution
 
Concatenable<A> - Interface in net.imglib2.concatenate
If T implements Concatenable that means you can concatenate it with an A, usually resulting in another T.
concatenate(A) - Method in interface net.imglib2.concatenate.Concatenable
Concatenate this object with a.
concatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform
 
concatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform2D
 
concatenate(AffineTransform2D) - Method in class net.imglib2.realtransform.AffineTransform2D
 
concatenate(double, double, double, double, double, double, double, double, double, double, double, double) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
concatenate(AffineTransform3D.AffineMatrix3D) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
concatenate(double...) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
concatenate(AffineTransform3D) - Method in class net.imglib2.realtransform.AffineTransform3D
 
concatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform3D
 
concatenate(ScaleGet) - Method in class net.imglib2.realtransform.Scale
 
concatenate(ScaleGet) - Method in class net.imglib2.realtransform.Scale2D
 
concatenate(ScaleGet) - Method in class net.imglib2.realtransform.Scale3D
 
concatenate(ScaleAndTranslationGet) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
concatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation
 
concatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation2D
 
concatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation3D
 
concatenate(ComponentMapping) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
concatenate(Mixed) - Method in class net.imglib2.transform.integer.MixedTransform
 
concatenate(Slicing) - Method in class net.imglib2.transform.integer.SlicingTransform
 
concatenate(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform
 
concatenate(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
concatenate(int, RandomAccessibleInterval<T>...) - Static method in class net.imglib2.view.Views
Concatenate an array of RandomAccessibleInterval along the provided concatenationAxis.
concatenate(int, List<? extends RandomAccessibleInterval<T>>) - Static method in class net.imglib2.view.Views
Concatenate a list of RandomAccessibleInterval along the provided concatenationAxis.
concatenate(int, StackView.StackAccessMode, RandomAccessibleInterval<T>...) - Static method in class net.imglib2.view.Views
Concatenate an array of RandomAccessibleInterval along the provided concatenationAxis.
concatenate(int, StackView.StackAccessMode, List<? extends RandomAccessibleInterval<T>>) - Static method in class net.imglib2.view.Views
Concatenate a list of RandomAccessibleInterval along the provided concatenationAxis.
ConcatenateUtils - Class in net.imglib2.concatenate
Utilities for manipulating lists of (pre-)concatenable objects.
ConcatenateUtils() - Constructor for class net.imglib2.concatenate.ConcatenateUtils
 
ConnectedComponentAnalysis - Class in net.imglib2.algorithm.labeling
 
ConnectedComponentAnalysis() - Constructor for class net.imglib2.algorithm.labeling.ConnectedComponentAnalysis
 
connectedComponents(RandomAccessibleInterval<B>, RandomAccessibleInterval<L>) - Static method in class net.imglib2.algorithm.labeling.ConnectedComponentAnalysis
Implementation of connected component analysis that uses IntArrayRankedUnionFind to find sets of pixels that are connected with respect to a 4-neighborhood (DiamondShape) or the generalization for higher dimenions over a binary mask.
connectedComponents(RandomAccessibleInterval<B>, RandomAccessibleInterval<L>, Shape) - Static method in class net.imglib2.algorithm.labeling.ConnectedComponentAnalysis
Implementation of connected component analysis that uses IntArrayRankedUnionFind to find sets of pixels that are connected with respect to a neighborhood (shape) over a binary mask.
connectedComponents(RandomAccessibleInterval<B>, RandomAccessibleInterval<L>, Shape, LongFunction<UnionFind>, ToLongBiFunction<Localizable, L>, LongUnaryOperator) - Static method in class net.imglib2.algorithm.labeling.ConnectedComponentAnalysis
Implementation of connected component analysis that uses UnionFind to find sets of pixels that are connected with respect to a neighborhood (shape) over a binary mask.
ConnectedComponents - Class in net.imglib2.algorithm.labeling
Label all connected components of a binary image.
ConnectedComponents() - Constructor for class net.imglib2.algorithm.labeling.ConnectedComponents
 
ConnectedComponents.StructuringElement - Enum in net.imglib2.algorithm.labeling
 
connectedComponentsOnAffinities(RandomAccessible<C>, long[][], RandomAccessibleInterval<L>, UnionFind, ToLongBiFunction<Localizable, L>, LongUnaryOperator) - Static method in class net.imglib2.algorithm.labeling.ConnectedComponentAnalysis
Connected components on a regular arbitrary boolean affinity graph.
connectedComponentsOnAffinities(RandomAccessible<C>, long[][], RandomAccessibleInterval<L>, UnionFind, long) - Static method in class net.imglib2.algorithm.labeling.ConnectedComponentAnalysis
Connected components on a regular arbitrary boolean affinity graph.
constantRandomAccessible(T, int) - Static method in class net.imglib2.util.ConstantUtils
 
constantRandomAccessibleInterval(T, Interval) - Static method in class net.imglib2.util.ConstantUtils
 
constantRandomAccessibleInterval(T, int, Interval) - Static method in class net.imglib2.util.ConstantUtils
Deprecated.
constantRealRandomAccessible(T, int) - Static method in class net.imglib2.util.ConstantUtils
 
ConstantUtils - Class in net.imglib2.util
 
ConstantUtils() - Constructor for class net.imglib2.util.ConstantUtils
 
constDs - Static variable in class net.imglib2.realtransform.Translation2D
 
constDs - Static variable in class net.imglib2.realtransform.Translation3D
 
container - Variable in class net.imglib2.img.planar.PlanarCursor
 
container - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
 
contains(Object) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
contains(Object) - Method in class net.imglib2.roi.labeling.LabelingMapping.InternedSet
 
contains(Object) - Method in class net.imglib2.roi.labeling.LabelingType
 
contains(double[]) - Method in class net.imglib2.roi.LineRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
 
contains(double[]) - Method in interface net.imglib2.roi.RegionOfInterest
Deprecated.
Determine whether a point is a member of the region of interest
contains(Interval, Localizable) - Static method in class net.imglib2.util.Intervals
Test whether the containing interval contains the contained point.
contains(RealInterval, RealLocalizable) - Static method in class net.imglib2.util.Intervals
Test whether the containing interval contains the contained point.
contains(Interval, Interval) - Static method in class net.imglib2.util.Intervals
Test whether the containing interval completely contains the contained interval.
contains(RealInterval, RealInterval) - Static method in class net.imglib2.util.Intervals
Test whether the containing interval completely contains the contained interval.
containsAll(Collection<?>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
containsAll(Collection<?>) - Method in class net.imglib2.roi.labeling.LabelingType
 
convert(A, A) - Method in class net.imglib2.algorithm.function.NormMinMax
 
convert(ARGBType, T) - Method in class net.imglib2.converter.ARGBARGBDoubleConverter
 
convert(T, ARGBType) - Method in class net.imglib2.converter.ARGBDoubleARGBConverter
 
convert(A, B, C) - Method in interface net.imglib2.converter.BiConverter
 
convert(UnsignedByteType, ARGBType) - Method in class net.imglib2.converter.ChannelARGBConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexImaginaryFloatConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexPhaseFloatConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexPowerFloatConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexPowerGLogFloatConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexRealFloatConverter
 
convert(A, T) - Method in class net.imglib2.converter.CompositeChannelConverter
 
convert(A, B) - Method in interface net.imglib2.converter.Converter
 
convert(RandomAccessible<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessible whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessible<A>, Supplier<Converter<? super A, ? super B>>, B) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessible whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessible<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessible whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessible<A>, Supplier<SamplerConverter<? super A, B>>) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessible whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessibleInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessibleInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessibleInterval<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessibleInterval<A>, Supplier<SamplerConverter<? super A, B>>) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convert(IterableRealInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a IterableRealInterval whose RealCursors Sampler.get() you a converted sample.
convert(IterableRealInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Static method in class net.imglib2.converter.Converters
Create a IterableRealInterval whose RealCursors Sampler.get() you a converted sample.
convert(IterableInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a IterableInterval whose Cursors Sampler.get() you a converted sample.
convert(IterableInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Static method in class net.imglib2.converter.Converters
Create a IterableInterval whose Cursors Sampler.get() you a converted sample.
convert(IterableInterval<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
Create an IterableInterval whose Cursors Sampler.get() you a converted sample.
convert(IterableRealInterval<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
Create an IterableRealInterval whose RealCursors Sampler.get() you a converted sample.
convert(IterableInterval<A>, Supplier<SamplerConverter<? super A, B>>) - Static method in class net.imglib2.converter.Converters
Create an IterableInterval whose Cursors Sampler.get() you a converted sample.
convert(RealRandomAccessibleRealInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
convert(RealRandomAccessibleRealInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Static method in class net.imglib2.converter.Converters
convert(RealRandomAccessible<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a RealRandomAccessible whose RealRandomAccesses Sampler.get() you a converted sample.
convert(RealRandomAccessible<A>, Supplier<Converter<? super A, ? super B>>, B) - Static method in class net.imglib2.converter.Converters
Create a RealRandomAccessible whose RealRandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessible<A>, RandomAccessible<B>, BiConverter<? super A, ? super B, ? super C>, C) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessible whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessible<A>, RandomAccessible<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessible whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convert(IterableInterval<A>, IterableInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Static method in class net.imglib2.converter.Converters
Create a IterableInterval whose Cursors Sampler.get() you a converted sample.
convert(IterableInterval<A>, IterableInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Static method in class net.imglib2.converter.Converters
Create a IterableInterval whose Cursors Sampler.get() you a converted sample.
convert(IterableRealInterval<A>, IterableRealInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Static method in class net.imglib2.converter.Converters
Create an IterableRealInterval whose RealCursors Sampler.get() you a converted sample.
convert(IterableRealInterval<A>, IterableRealInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Static method in class net.imglib2.converter.Converters
Create a IterableRealInterval whose RealCursors Sampler.get() you a converted sample.
convert(RealRandomAccessibleRealInterval<A>, RealRandomAccessibleRealInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Static method in class net.imglib2.converter.Converters
convert(RealRandomAccessibleRealInterval<A>, RealRandomAccessibleRealInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Static method in class net.imglib2.converter.Converters
convert(RealRandomAccessible<A>, RealRandomAccessible<B>, BiConverter<? super A, ? super B, ? super C>, C) - Static method in class net.imglib2.converter.Converters
Create a RealRandomAccessible whose RealRandomAccesses Sampler.get() you a converted sample.
convert(RealRandomAccessible<A>, RealRandomAccessible<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Static method in class net.imglib2.converter.Converters
Create a RealRandomAccessible whose RealRandomAccesses Sampler.get() you a converted sample.
convert(ARGBLongAccessType, ARGBType) - Method in class net.imglib2.converter.longaccess.ARGBConverter
 
convert(FloatLongAccessType, FloatType) - Method in class net.imglib2.converter.longaccess.FloatConverter
 
convert(Sampler<? extends ARGBType>) - Method in class net.imglib2.converter.readwrite.ARGBChannelSamplerConverter
 
convert(Sampler<? extends Composite<UnsignedByteType>>) - Method in class net.imglib2.converter.readwrite.CompositeARGBSamplerConverter
 
convert(Sampler<? extends ARGBLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.ARGBLongAccessTypeARGBTypeConverter
 
convert(Sampler<? extends ByteLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.ByteLongAccessTypeByteTypeConverter
 
convert(Sampler<? extends ComplexDoubleLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.ComplexDoubleLongAccessTypeComplexDoubleTypeConverter
 
convert(Sampler<? extends ComplexFloatLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.ComplexFloatLongAccessTypeComplexFloatTypeConverter
 
convert(Sampler<? extends DoubleLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.DoubleLongAccessTypeDoubleTypeConverter
 
convert(Sampler<? extends FloatLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.FloatLongAccessTypeFloatTypeConverter
 
convert(Sampler<? extends IntLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.IntLongAccessTypeIntTypeConverter
 
convert(Sampler<? extends LongLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.LongLongAccessTypeLongTypeConverter
 
convert(Sampler<? extends ShortLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.ShortLongAccessTypeShortTypeConverter
 
convert(Sampler<? extends UnsignedByteLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.UnsignedByteLongAccessTypeUnsignedByteTypeConverter
 
convert(Sampler<? extends UnsignedIntLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.UnsignedIntLongAccessTypeUnsignedIntTypeConverter
 
convert(Sampler<? extends UnsignedLongLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.UnsignedLongLongAccessTypeUnsignedLongTypeConverter
 
convert(Sampler<? extends UnsignedShortLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.UnsignedShortLongAccessTypeUnsignedShortTypeConverter
 
convert(Sampler<? extends R>) - Method in class net.imglib2.converter.readwrite.RealDoubleSamplerConverter
 
convert(Sampler<? extends R>) - Method in class net.imglib2.converter.readwrite.RealFloatSamplerConverter
 
convert(Sampler<? extends A>) - Method in interface net.imglib2.converter.readwrite.SamplerConverter
 
convert(R, ARGBType) - Method in class net.imglib2.converter.RealARGBConverter
 
convert(R, DoubleType) - Method in class net.imglib2.converter.RealDoubleConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.RealFloatConverter
 
convert(R, ARGBType) - Method in class net.imglib2.converter.RealLUTConverter
 
convert(RandomAccessibleInterval<? extends RealType<?>>, T) - Static method in class net.imglib2.converter.RealTypeConverters
Convert the pixel type of the given image to a given output pixel type.
convert(R, UnsignedByteType) - Method in class net.imglib2.converter.RealUnsignedByteConverter
 
convert(R, UnsignedShortType) - Method in class net.imglib2.converter.RealUnsignedShortConverter
 
convert(T, T) - Method in class net.imglib2.converter.TypeIdentity
 
convert(VolatileRealType<?>, ARGBType) - Method in class net.imglib2.converter.VolatileRealTypeARGBConverter
 
converted - Variable in class net.imglib2.converter.read.BiConvertedCursor
 
converted - Variable in class net.imglib2.converter.read.BiConvertedIterableInterval
 
converted - Variable in class net.imglib2.converter.read.BiConvertedIterableRealInterval
 
converted - Variable in class net.imglib2.converter.read.BiConvertedRandomAccess
 
converted - Variable in class net.imglib2.converter.read.BiConvertedRandomAccessible
 
converted - Variable in class net.imglib2.converter.read.BiConvertedRandomAccessibleInterval
 
converted - Variable in class net.imglib2.converter.read.BiConvertedRealCursor
 
converted - Variable in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
converted - Variable in class net.imglib2.converter.read.BiConvertedRealRandomAccessible
 
converted - Variable in class net.imglib2.converter.read.BiConvertedRealRandomAccessibleRealInterval
 
converted - Variable in class net.imglib2.converter.read.ConvertedCursor
 
converted - Variable in class net.imglib2.converter.read.ConvertedIterableInterval
 
converted - Variable in class net.imglib2.converter.read.ConvertedIterableRealInterval
 
converted - Variable in class net.imglib2.converter.read.ConvertedRandomAccess
 
converted - Variable in class net.imglib2.converter.read.ConvertedRandomAccessible
 
converted - Variable in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
converted - Variable in class net.imglib2.converter.read.ConvertedRealCursor
 
converted - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccess
 
converted - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
converted - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
ConvertedAccess(ARGBLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.ARGBLongAccessTypeARGBTypeConverter.ConvertedAccess
 
ConvertedAccess(ByteLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.ByteLongAccessTypeByteTypeConverter.ConvertedAccess
 
ConvertedAccess(ComplexDoubleLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.ComplexDoubleLongAccessTypeComplexDoubleTypeConverter.ConvertedAccess
 
ConvertedAccess(ComplexFloatLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.ComplexFloatLongAccessTypeComplexFloatTypeConverter.ConvertedAccess
 
ConvertedAccess(DoubleLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.DoubleLongAccessTypeDoubleTypeConverter.ConvertedAccess
 
ConvertedAccess(FloatLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.FloatLongAccessTypeFloatTypeConverter.ConvertedAccess
 
ConvertedAccess(IntLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.IntLongAccessTypeIntTypeConverter.ConvertedAccess
 
ConvertedAccess(LongLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.LongLongAccessTypeLongTypeConverter.ConvertedAccess
 
ConvertedAccess(ShortLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.ShortLongAccessTypeShortTypeConverter.ConvertedAccess
 
ConvertedAccess(UnsignedByteLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.UnsignedByteLongAccessTypeUnsignedByteTypeConverter.ConvertedAccess
 
ConvertedAccess(UnsignedIntLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.UnsignedIntLongAccessTypeUnsignedIntTypeConverter.ConvertedAccess
 
ConvertedAccess(UnsignedLongLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.UnsignedLongLongAccessTypeUnsignedLongTypeConverter.ConvertedAccess
 
ConvertedAccess(UnsignedShortLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.UnsignedShortLongAccessTypeUnsignedShortTypeConverter.ConvertedAccess
 
ConvertedCursor<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedCursor(Cursor<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedCursor
Creates a copy of b for conversion that can be accessed through ConvertedCursor.get().
ConvertedCursor(Cursor<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedCursor
Creates a copy of b for conversion that can be accessed through ConvertedCursor.get().
ConvertedIterableInterval<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedIterableInterval(IterableInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedIterableInterval
Creates a copy of b for conversion.
ConvertedIterableInterval(IterableInterval<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedIterableInterval
Creates a copy of b for conversion.
ConvertedIterableRealInterval<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedIterableRealInterval(IterableRealInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedIterableRealInterval
Creates a copy of b for conversion.
ConvertedIterableRealInterval(IterableRealInterval<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedIterableRealInterval
Creates a copy of b for conversion.
ConvertedRandomAccess<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRandomAccess(RandomAccess<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccess
Creates a copy of b for conversion that can be accessed through ConvertedRandomAccess.get().
ConvertedRandomAccess(RandomAccess<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccess
Use this constructor for stateless functions
ConvertedRandomAccessible<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRandomAccessible(RandomAccessible<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccessible
 
ConvertedRandomAccessible(RandomAccessible<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccessible
 
ConvertedRandomAccessibleInterval<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
ConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
ConvertedRealCursor<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRealCursor(RealCursor<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealCursor
Creates a copy of b for conversion that can be accessed through ConvertedRealCursor.get().
ConvertedRealCursor(RealCursor<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealCursor
Creates a copy of b for conversion that can be accessed through ConvertedRealCursor.get().
ConvertedRealRandomAccess<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRealRandomAccess(RealRandomAccess<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccess
Creates a copy of b for conversion that can be accessed through ConvertedRealRandomAccess.get().
ConvertedRealRandomAccess(RealRandomAccess<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccess
 
ConvertedRealRandomAccessible<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRealRandomAccessible(RealRandomAccessible<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
ConvertedRealRandomAccessible(RealRandomAccessible<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
ConvertedRealRandomAccessibleRealInterval<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRealRandomAccessibleRealInterval(RealRandomAccessibleRealInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
ConvertedRealRandomAccessibleRealInterval(RealRandomAccessibleRealInterval<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
converter - Variable in class net.imglib2.algorithm.integral.IntegralImg
 
Converter<A,B> - Interface in net.imglib2.converter
This interface is equivalent to the BiConsumer interface and exists for historical reasons only.
converter - Variable in class net.imglib2.converter.read.BiConvertedCursor
 
converter - Variable in class net.imglib2.converter.read.BiConvertedRandomAccess
 
converter - Variable in class net.imglib2.converter.read.BiConvertedRealCursor
 
converter - Variable in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
converter - Variable in class net.imglib2.converter.read.ConvertedCursor
 
converter - Variable in class net.imglib2.converter.read.ConvertedRandomAccess
 
converter - Variable in class net.imglib2.converter.read.ConvertedRealCursor
 
converter - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccess
 
converter - Variable in class net.imglib2.display.projector.IterableIntervalProjector2D
 
converter - Variable in class net.imglib2.display.projector.RandomAccessibleProjector2D
 
converter - Variable in class net.imglib2.display.projector.sampler.SamplingProjector2D
 
converterListRGBA - Static variable in class net.imglib2.converter.ChannelARGBConverter
ChannelARGBConverter.converterListRGBA can be used in CompositeXYProjector to convert a 4-channel UnsignedByteType into composite ARGBType.
Converters - Class in net.imglib2.converter
Convenience factory methods for sample conversion.
Converters() - Constructor for class net.imglib2.converter.Converters
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedCursor
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedIterableInterval
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedIterableRealInterval
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedRandomAccess
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedRandomAccessible
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedRandomAccessibleInterval
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedRealCursor
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedRealRandomAccessible
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedRealRandomAccessibleRealInterval
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedCursor
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedIterableInterval
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedIterableRealInterval
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedRandomAccess
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedRandomAccessible
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedRealCursor
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccess
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
convertFloat(ImagePlus) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
convertFloat(ImagePlus) - Static method in class net.imglib2.img.ImagePlusAdapter
 
convertRAI(RandomAccessibleInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convertRAI(RandomAccessibleInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convertRAI(RandomAccessibleInterval<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convertRAI(RandomAccessibleInterval<A>, Supplier<SamplerConverter<? super A, B>>) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convertRAI(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convertRAI(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convertRandomAccessibleIterableInterval(S, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
convertRandomAccessibleIterableInterval(S, Supplier<SamplerConverter<? super A, B>>) - Static method in class net.imglib2.converter.Converters
convertToFloat() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
convertToFloat(Img<T>, Converter<T, FloatType>) - Static method in class net.imglib2.img.ImagePlusAdapter
 
ConvexPolytope - Class in net.imglib2.algorithm.kdtree
 
ConvexPolytope(Collection<? extends HyperPlane>) - Constructor for class net.imglib2.algorithm.kdtree.ConvexPolytope
 
ConvexPolytope(HyperPlane...) - Constructor for class net.imglib2.algorithm.kdtree.ConvexPolytope
 
Convolution<T> - Interface in net.imglib2.algorithm.convolution
This interface allows the client to perform a convolution.
convolution(double[]) - Static method in class net.imglib2.algorithm.convolution.fast_gauss.FastGauss
 
convolution(double) - Static method in class net.imglib2.algorithm.convolution.fast_gauss.FastGauss
 
convolution(Kernel1D...) - Static method in class net.imglib2.algorithm.convolution.kernel.SeparableKernelConvolution
Return an object, that performs the separable convolution with the given kernel.
convolution1d(double, int) - Static method in class net.imglib2.algorithm.convolution.fast_gauss.FastGauss
 
convolution1d(Kernel1D, int) - Static method in class net.imglib2.algorithm.convolution.kernel.SeparableKernelConvolution
Apply a convolution only in one dimension.
convolve(double[], RandomAccessible<? extends RealType<?>>, RandomAccessibleInterval<? extends RealType<?>>) - Static method in class net.imglib2.algorithm.convolution.fast_gauss.FastGauss
 
convolve(double, RandomAccessible<? extends RealType<?>>, RandomAccessibleInterval<? extends RealType<?>>) - Static method in class net.imglib2.algorithm.convolution.fast_gauss.FastGauss
 
convolve(Kernel1D[], RandomAccessible<? extends NumericType<?>>, RandomAccessibleInterval<? extends NumericType<?>>) - Static method in class net.imglib2.algorithm.convolution.kernel.SeparableKernelConvolution
Convolve source with a separable kernel and write the result to output.
convolve(Img<T>, Img<S>) - Static method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
convolve(RandomAccessibleInterval<T>, RandomAccessibleInterval<S>, ImgFactory<T>, ImgFactory<S>, ImgFactory<ComplexFloatType>) - Static method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
convolve() - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
convolve(RandomAccessible<R>, Interval, RandomAccessible<R>, Interval, RandomAccessibleInterval<R>, ImgFactory<ComplexFloatType>, boolean, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTConvolution
 
convolve(double[][], RandomAccessible<S>, RandomAccessibleInterval<T>, ExecutorService) - Static method in class net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution
Deprecated.
Use SeparableKernelConvolution.convolution(Kernel1D[])

Convolve source with a separable symmetric kernel and write the result to output. In-place operation (source==target) is supported.

If the target type T is DoubleType, all calculations are done in double precision. For all other target RealTypes float precision is used. General NumericTypes are computed in their own precision. The source type S and target type T are either both RealTypes or both the same type.

convolve(double[][], RandomAccessible<S>, RandomAccessibleInterval<T>, ConvolverFactory<S, I>, ConvolverFactory<I, I>, ConvolverFactory<I, T>, ConvolverFactory<S, T>, ImgFactory<I>, ExecutorService) - Static method in class net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution
Deprecated.
Use SeparableKernelConvolution.convolution(Kernel1D[]). Or LineConvolution and Convolution.concat(net.imglib2.algorithm.convolution.Convolution<T>...).

Convolve source with a separable symmetric kernel and write the result to output. In-place operation (source==target) is supported. Calculations are done in the intermediate type determined by the ConvolverFactories.

convolve(double[][], RandomAccessible<S>, RandomAccessibleInterval<T>, ConvolverFactory<S, I>, ConvolverFactory<I, I>, ConvolverFactory<I, T>, ConvolverFactory<S, T>, ImgFactory<I>, I, ExecutorService) - Static method in class net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution
convolve1d(double[], RandomAccessible<S>, RandomAccessibleInterval<T>, ConvolverFactory<S, T>, ExecutorService) - Static method in class net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution
ConvolverFactory<S,T> - Interface in net.imglib2.algorithm.gauss3
Deprecated.
ConvolverFactoryNativeType(T) - Constructor for class net.imglib2.algorithm.gauss3.ConvolverNativeType.ConvolverFactoryNativeType
Deprecated.
 
ConvolverFactoryNativeTypeBuffered(T) - Constructor for class net.imglib2.algorithm.gauss3.ConvolverNativeTypeBuffered.ConvolverFactoryNativeTypeBuffered
Deprecated.
 
ConvolverNativeType<T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.algorithm.convolution.kernel
A 1-dimensional line convolver that operates on all NumericType with NativeType representation.
ConvolverNativeType(Kernel1D, RandomAccess<? extends T>, RandomAccess<? extends T>, int, long) - Constructor for class net.imglib2.algorithm.convolution.kernel.ConvolverNativeType
 
ConvolverNativeType<T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.algorithm.gauss3
Deprecated.
ConvolverNativeType.ConvolverFactoryNativeType<T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.algorithm.gauss3
Deprecated.
 
ConvolverNativeTypeBuffered<T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.algorithm.gauss3
Deprecated.
ConvolverNativeTypeBuffered.ConvolverFactoryNativeTypeBuffered<T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.algorithm.gauss3
Deprecated.
 
ConvolverNumericType<T extends NumericType<T>> - Class in net.imglib2.algorithm.convolution.kernel
A 1-dimensional line convolver that operates on all NumericType.
ConvolverNumericType(Kernel1D, RandomAccess<? extends T>, RandomAccess<? extends T>, int, long) - Constructor for class net.imglib2.algorithm.convolution.kernel.ConvolverNumericType
 
ConvolverNumericType<T extends NumericType<T>> - Class in net.imglib2.algorithm.gauss3
Deprecated.
ConvolverNumericType.ConvolverNumericTypeFactory<T extends NumericType<T>> - Class in net.imglib2.algorithm.gauss3
Deprecated.
 
ConvolverNumericTypeFactory(T) - Constructor for class net.imglib2.algorithm.gauss3.ConvolverNumericType.ConvolverNumericTypeFactory
Deprecated.
 
coordinates - Variable in class net.imglib2.PointSampleList
 
coordinates - Variable in class net.imglib2.RealPointSampleList
 
copy() - Method in class net.imglib2.AbstractCursor
 
copy() - Method in class net.imglib2.AbstractCursorInt
 
copy() - Method in class net.imglib2.AbstractLocalizingCursor
 
copy() - Method in class net.imglib2.AbstractLocalizingCursorInt
 
copy() - Method in interface net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolator
 
copy() - Method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorEven
 
copy() - Method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorOdd
 
copy() - Method in class net.imglib2.algorithm.fft.LocalNeighborhoodCursor
Deprecated.
 
copy() - Method in class net.imglib2.algorithm.gauss.SamplingLineIterator
Deprecated.
 
copy() - Method in class net.imglib2.algorithm.gradient.ScaleAsFunctionOfPosition.ScaledRandomAccess