A

a - Variable in class net.imglib2.algorithm.math.abstractions.ABinaryFunction

 

a - Variable in class net.imglib2.algorithm.math.abstractions.ATrinaryFunction

 

a - Variable in class net.imglib2.algorithm.math.abstractions.AUnaryFunction

 

a - Variable in class net.imglib2.algorithm.math.execution.Comparison

 

a - Variable in class net.imglib2.algorithm.math.execution.LogicalNot

 

a - Variable in class net.imglib2.realtransform.AbstractAffineTransform

 

a - Variable in class net.imglib2.realtransform.AffineTransform2D

 

a - Variable in class net.imglib2.realtransform.AffineTransform3D

 

a - Variable in class net.imglib2.realtransform.PolynomialTransform2D

holds two coefficients for each polynomial coefficient, including 1 initialized at 0 order, i.e.

a - Variable in class net.imglib2.type.numeric.ARGBDoubleType

 

a - Variable in class net.imglib2.util.ValuePair

 

a - Variable in class net.imglib2.view.RandomAccessiblePair.RandomAccess

 

ABinaryFunction - Class in net.imglib2.algorithm.math.abstractions

 

ABinaryFunction(Object, Object) - Constructor for class net.imglib2.algorithm.math.abstractions.ABinaryFunction

 

ABinaryFunction(Object...) - Constructor for class net.imglib2.algorithm.math.abstractions.ABinaryFunction

 

ABooleanFunction<O extends RealType<O>> - Class in net.imglib2.algorithm.math.abstractions

 

ABooleanFunction(O) - Constructor for class net.imglib2.algorithm.math.abstractions.ABooleanFunction

 

Abstract3x3TableOperation - Class in net.imglib2.algorithm.morphology.table2d

Performs a binary operation on a 3x3 2-D neighborhood using a table of truth values to drive the operation.

Abstract3x3TableOperation() - Constructor for class net.imglib2.algorithm.morphology.table2d.Abstract3x3TableOperation

 

AbstractAccessProxy<T> - Class in net.imglib2.img.io.proxyaccess

 

AbstractAccessProxy(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.img.io.proxyaccess.AbstractAccessProxy

 

AbstractAdaptingInterval(int) - Constructor for class net.imglib2.roi.Bounds.AbstractAdaptingInterval

 

AbstractAdaptingRealInterval(int) - Constructor for class net.imglib2.roi.Bounds.AbstractAdaptingRealInterval

 

AbstractAffineTransform - Class in net.imglib2.realtransform

An abstract implementation of an affine transformation that returns default values referring to the identity transformation for all fields.

AbstractAffineTransform(Matrix, double[]) - Constructor for class net.imglib2.realtransform.AbstractAffineTransform

 

AbstractAffineTransform(Matrix) - Constructor for class net.imglib2.realtransform.AbstractAffineTransform

 

AbstractAffineTransform(int) - Constructor for class net.imglib2.realtransform.AbstractAffineTransform

 

AbstractARGBDoubleType<T extends AbstractARGBDoubleType<T>> - Class in net.imglib2.type.numeric

 

AbstractARGBDoubleType() - Constructor for class net.imglib2.type.numeric.AbstractARGBDoubleType

 

AbstractArrayColorTable<T> - Class in net.imglib2.display

Abstract superclass for array-based color lookup tables.

AbstractArrayColorTable(T...) - Constructor for class net.imglib2.display.AbstractArrayColorTable

Initializes a color table with the given table values.

AbstractArrayCursor<T extends NativeType<T>> - Class in net.imglib2.img.array

Cursor on an ArrayImg.

AbstractArrayCursor(AbstractArrayCursor<T>) - Constructor for class net.imglib2.img.array.AbstractArrayCursor

TODO Javadoc

AbstractArrayCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.AbstractArrayCursor

TODO Javadoc

AbstractArrayLocalizingCursor<T extends NativeType<T>> - Class in net.imglib2.img.array

Localizing Cursor on an ArrayImg.

AbstractArrayLocalizingCursor(AbstractArrayLocalizingCursor<T>) - Constructor for class net.imglib2.img.array.AbstractArrayLocalizingCursor

TODO Javadoc

AbstractArrayLocalizingCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.AbstractArrayLocalizingCursor

TODO Javadoc

AbstractBit64Type<T extends AbstractBit64Type<T>> - Class in net.imglib2.type

A Type with arbitrary bit depth up to maximum 64 bits.

AbstractBit64Type(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.AbstractBit64Type

 

AbstractBit64Type(long, int) - Constructor for class net.imglib2.type.AbstractBit64Type

 

AbstractBit64Type(LongAccess, int) - Constructor for class net.imglib2.type.AbstractBit64Type

 

AbstractBit64Type(int) - Constructor for class net.imglib2.type.AbstractBit64Type

 

AbstractBitType<T extends AbstractBitType<T>> - Class in net.imglib2.type

Provides basic infrastructure to implement Types based on single bits stored in a LongAccess

AbstractBitType(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.AbstractBitType

 

AbstractBooleanArray<A extends AbstractBooleanArray<A>> - Class in net.imglib2.img.basictypeaccess.array

 

AbstractBooleanArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractBooleanArray

 

AbstractBooleanArray(boolean[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractBooleanArray

 

AbstractBsplineKernel - Class in net.imglib2.algorithm.bspline

 

AbstractBsplineKernel() - Constructor for class net.imglib2.algorithm.bspline.AbstractBsplineKernel

 

AbstractByteArray<A extends AbstractByteArray<A>> - Class in net.imglib2.img.basictypeaccess.array

 

AbstractByteArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractByteArray

 

AbstractByteArray(byte[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractByteArray

 

AbstractByteArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractByteArrayIo

 

AbstractCache<K,V> - Interface in net.imglib2.cache

 

AbstractCacheKeyAdapter<K,L,V,C extends AbstractCache<L,V>> - Class in net.imglib2.cache.util

Wraps a Cache<L,V> as a Cache<K,V>, using a KeyBimap<K,L> to translate keys.

AbstractCacheKeyAdapter(C, KeyBimap<K, L>) - Constructor for class net.imglib2.cache.util.AbstractCacheKeyAdapter

 

AbstractCellImg<T extends NativeType<T>,A,C extends Cell<A>,I extends RandomAccessible<C> & IterableInterval<C>> - Class in net.imglib2.img.cell

Abstract superclass for Img types that divide their underlying data into cells.

AbstractCellImg(CellGrid, I, Fraction) - Constructor for class net.imglib2.img.cell.AbstractCellImg

 

AbstractCellImg.CellImgSampler<C> - Interface in net.imglib2.img.cell

This interface is implemented by all samplers on the AbstractCellImg.

AbstractCharArray<A extends AbstractCharArray<A>> - Class in net.imglib2.img.basictypeaccess.array

 

AbstractCharArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractCharArray

 

AbstractCharArray(char[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractCharArray

 

AbstractCharArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractCharArrayIo

 

AbstractComplexType<T extends AbstractComplexType<T>> - Class in net.imglib2.type.numeric.complex

TODO

AbstractComplexType() - Constructor for class net.imglib2.type.numeric.complex.AbstractComplexType

 

AbstractComposite<T> - Class in net.imglib2.view.composite

Abstract implementation of Composite.

AbstractComposite(RandomAccess<T>) - Constructor for class net.imglib2.view.composite.AbstractComposite

 

AbstractConvertedCursor<A,B> - Class in net.imglib2.converter

TODO

AbstractConvertedCursor(Cursor<A>) - Constructor for class net.imglib2.converter.AbstractConvertedCursor

 

AbstractConvertedIterableInterval<A,B> - Class in net.imglib2.converter

TODO

AbstractConvertedIterableInterval(IterableInterval<A>) - Constructor for class net.imglib2.converter.AbstractConvertedIterableInterval

 

AbstractConvertedIterableRandomAccessibleInterval<A,B,S extends RandomAccessible<A> & IterableInterval<A>> - Class in net.imglib2.converter

TODO

AbstractConvertedIterableRandomAccessibleInterval(S) - Constructor for class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval

 

AbstractConvertedIterableRealInterval<A,B> - Class in net.imglib2.converter

TODO

AbstractConvertedIterableRealInterval(IterableRealInterval<A>) - Constructor for class net.imglib2.converter.AbstractConvertedIterableRealInterval

 

AbstractConvertedRandomAccess<A,B> - Class in net.imglib2.converter

TODO

AbstractConvertedRandomAccess(RandomAccess<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccess

 

AbstractConvertedRandomAccessible<A,B> - Class in net.imglib2.converter

TODO

AbstractConvertedRandomAccessible(RandomAccessible<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccessible

 

AbstractConvertedRandomAccessibleInterval<A,B> - Class in net.imglib2.converter

 

AbstractConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccessibleInterval

 

AbstractConvertedRealCursor<A,B> - Class in net.imglib2.converter

TODO

AbstractConvertedRealCursor(RealCursor<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRealCursor

 

AbstractConvertedRealRandomAccess<A,B> - Class in net.imglib2.converter

TODO

AbstractConvertedRealRandomAccess(RealRandomAccess<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRealRandomAccess

 

AbstractConvertedRealRandomAccessible<A,B> - Class in net.imglib2.converter

TODO

AbstractConvertedRealRandomAccessible(RealRandomAccessible<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRealRandomAccessible

 

AbstractCursor<T> - Class in net.imglib2

Abstract implementation of Cursor.

AbstractCursor(int) - Constructor for class net.imglib2.AbstractCursor

 

AbstractCursorInt<T> - Class in net.imglib2

Abstract implementation of Cursor.

AbstractCursorInt(int) - Constructor for class net.imglib2.AbstractCursorInt

 

AbstractDifferentiableRealTransform - Class in net.imglib2.realtransform.inverse

 

AbstractDifferentiableRealTransform() - Constructor for class net.imglib2.realtransform.inverse.AbstractDifferentiableRealTransform

 

AbstractDoubleArray<A extends AbstractDoubleArray<A>> - Class in net.imglib2.img.basictypeaccess.array

 

AbstractDoubleArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray

 

AbstractDoubleArray(double[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray

 

AbstractDoubleArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractDoubleArrayIo

 

AbstractEuclideanSpace - Class in net.imglib2

Superclass of abstract EuclideanSpace implementations (accessors, containers, etc).

AbstractEuclideanSpace(int) - Constructor for class net.imglib2.AbstractEuclideanSpace

 

AbstractFloatArray<A extends AbstractFloatArray<A>> - Class in net.imglib2.img.basictypeaccess.array

 

AbstractFloatArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractFloatArray

 

AbstractFloatArray(float[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractFloatArray

 

AbstractFloatArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractFloatArrayIo

 

AbstractFunctionEuclideanSpace<P,T> - Class in net.imglib2.position

Abstract base class for functions that generate values through a BiConsumer.

AbstractFunctionEuclideanSpace(int, Supplier<BiConsumer<P, ? super T>>, Supplier<T>) - Constructor for class net.imglib2.position.AbstractFunctionEuclideanSpace

Constructor for stateful functions that cannot be used concurrently.

AbstractFunctionEuclideanSpace(int, BiConsumer<P, ? super T>, Supplier<T>) - Constructor for class net.imglib2.position.AbstractFunctionEuclideanSpace

Simplified constructor if the same function is stateless and can be used concurrently.

AbstractGauss<T extends NumericType<T>> - Class in net.imglib2.algorithm.gauss

 

AbstractGauss(double[], RandomAccessible<T>, Interval, RandomAccessible<T>, Localizable, ImgFactory<T>, T) - Constructor for class net.imglib2.algorithm.gauss.AbstractGauss

 

AbstractImg<T> - Class in net.imglib2.img

TODO

AbstractImg(long[]) - Constructor for class net.imglib2.img.AbstractImg

 

AbstractIntArray<A extends AbstractIntArray<A>> - Class in net.imglib2.img.basictypeaccess.array

 

AbstractIntArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractIntArray

 

AbstractIntArray(int[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractIntArray

 

AbstractIntArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractIntArrayIo

 

AbstractIntegerBitType<T extends AbstractIntegerBitType<T>> - Class in net.imglib2.type.numeric.integer

The performance of this type is traded off for the gain in memory storage.

AbstractIntegerBitType(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.numeric.integer.AbstractIntegerBitType

 

AbstractIntegerType<T extends AbstractIntegerType<T>> - Class in net.imglib2.type.numeric.integer

TODO

AbstractIntegerType() - Constructor for class net.imglib2.type.numeric.integer.AbstractIntegerType

 

AbstractInterval - Class in net.imglib2

Implementation of the Interval interface.

AbstractInterval(int) - Constructor for class net.imglib2.AbstractInterval

Creates an n-dimensional AbstractInterval with min and max = 0ⁿ.

AbstractInterval(Interval) - Constructor for class net.imglib2.AbstractInterval

Creates a AbstractInterval from another Interval

AbstractInterval(Dimensions) - Constructor for class net.imglib2.AbstractInterval

Creates an Interval with the boundaries [0, dimensions-1]

AbstractInterval(long[], long[], boolean) - Constructor for class net.imglib2.AbstractInterval

Creates an Interval with the boundaries [min, max] (both including)

AbstractInterval(long[], long[]) - Constructor for class net.imglib2.AbstractInterval

Creates an Interval with the boundaries [min, max] (both including)

AbstractInterval(Localizable, Localizable) - Constructor for class net.imglib2.AbstractInterval

Creates an Interval with the boundaries [min, max] (both including)

AbstractInterval(long[]) - Constructor for class net.imglib2.AbstractInterval

Creates an Interval with the boundaries [0, dimensions-1]

AbstractIterableRegionOfInterest - Class in net.imglib2.roi

Deprecated.

AbstractIterableRegionOfInterest(int) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest

Deprecated.

 

AbstractIterableRegionOfInterest.AROIClippedIterableInterval<T extends Type<T>> - Class in net.imglib2.roi

Deprecated.

 

AbstractIterableRegionOfInterest.AROIIterableInterval<T extends Type<T>> - Class in net.imglib2.roi

Deprecated.

 

AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor - Class in net.imglib2.roi

Deprecated.

 

AbstractIterableRegionOfInterest.AROIIterationOrder - Class in net.imglib2.roi

Deprecated.

 

AbstractLabeling<T extends Comparable<T>> - Class in net.imglib2.labeling

Deprecated.

AbstractLabeling(long[], LabelingROIStrategyFactory<T>) - Constructor for class net.imglib2.labeling.AbstractLabeling

Deprecated.

 

AbstractLinearRange - Class in net.imglib2.display

 

AbstractLinearRange() - Constructor for class net.imglib2.display.AbstractLinearRange

 

AbstractLinearRange(double, double) - Constructor for class net.imglib2.display.AbstractLinearRange

 

AbstractLineIterator - Class in net.imglib2.algorithm.gauss

Deprecated.

AbstractLineIterator(int, long, A) - Constructor for class net.imglib2.algorithm.gauss.AbstractLineIterator

Deprecated.

Make a new LineIterator which iterates a 1d line of a certain length

AbstractLineIterator(int, long, Localizable, Positionable) - Constructor for class net.imglib2.algorithm.gauss.AbstractLineIterator

Deprecated.

Make a new LineIterator which iterates a 1d line of a certain length

AbstractListImg<T> - Class in net.imglib2.img.list

Abstract base class for Img that store pixels in a single linear array (an ArrayList or similar).In principle, the number of entities stored is limited to Integer.MAX_VALUE.

AbstractListImg(long[]) - Constructor for class net.imglib2.img.list.AbstractListImg

 

AbstractLocalizable - Class in net.imglib2

An abstract class that implements the Localizable interface using a long[] array to maintain position.

AbstractLocalizable(int) - Constructor for class net.imglib2.AbstractLocalizable

 

AbstractLocalizable(long[]) - Constructor for class net.imglib2.AbstractLocalizable

Protected constructor that re-uses the passed position array.

AbstractLocalizableInt - Class in net.imglib2

An abstract class that implements the Localizable interface using an int[] array to maintain position.

AbstractLocalizableInt(int) - Constructor for class net.imglib2.AbstractLocalizableInt

 

AbstractLocalizableInt(int[]) - Constructor for class net.imglib2.AbstractLocalizableInt

Protected constructor that re-uses the passed position array.

AbstractLocalizingCursor<T> - Class in net.imglib2

Abstract base class for localizing Cursors.

AbstractLocalizingCursor(int) - Constructor for class net.imglib2.AbstractLocalizingCursor

 

AbstractLocalizingCursorInt<T> - Class in net.imglib2

Abstract base class for localizing Cursors.

AbstractLocalizingCursorInt(int) - Constructor for class net.imglib2.AbstractLocalizingCursorInt

 

AbstractLongArray<A extends AbstractLongArray<A>> - Class in net.imglib2.img.basictypeaccess.array

 

AbstractLongArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractLongArray

 

AbstractLongArray(long[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractLongArray

 

AbstractLongArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractLongArrayIo

 

AbstractLongListImg<T> - Class in net.imglib2.img.list

Abstract base class for Img that store pixels in a single linear list addressed by a long.

AbstractLongListImg(long[]) - Constructor for class net.imglib2.img.list.AbstractLongListImg

 

AbstractLongListImg.LongListCursor - Class in net.imglib2.img.list

 

AbstractLongListImg.LongListLocalizingCursor - Class in net.imglib2.img.list

 

AbstractLongListImg.LongListRandomAccess - Class in net.imglib2.img.list

 

AbstractMixedTransform - Class in net.imglib2.transform.integer

TODO

AbstractMixedTransform(int) - Constructor for class net.imglib2.transform.integer.AbstractMixedTransform

 

AbstractMultiThreadedConvolution<T> - Class in net.imglib2.algorithm.convolution

Deprecated.

AbstractMultiThreadedConvolution() - Constructor for class net.imglib2.algorithm.convolution.AbstractMultiThreadedConvolution

Deprecated.

 

AbstractNativeImg<T extends NativeType<T>,A> - Class in net.imglib2.img

TODO

AbstractNativeImg(long[], Fraction) - Constructor for class net.imglib2.img.AbstractNativeImg

 

AbstractNativeLabeling<T extends Comparable<T>> - Class in net.imglib2.labeling

Deprecated.

AbstractNativeLabeling(long[], LabelingROIStrategyFactory<T>, LabelingMapping<T>) - Constructor for class net.imglib2.labeling.AbstractNativeLabeling

Deprecated.

 

AbstractNativeLongAccessImg<T extends NativeLongAccessType<T>,A> - Class in net.imglib2.img

TODO

AbstractNativeLongAccessImg(long[], Fraction) - Constructor for class net.imglib2.img.AbstractNativeLongAccessImg

 

AbstractNativeLongAccessType<T extends AbstractNativeLongAccessType<T>> - Class in net.imglib2.type

 

AbstractNativeLongAccessType() - Constructor for class net.imglib2.type.AbstractNativeLongAccessType

 

AbstractNativeType<T extends AbstractNativeType<T>> - Class in net.imglib2.type

TODO

AbstractNativeType() - Constructor for class net.imglib2.type.AbstractNativeType

 

AbstractNeighborhood<T> - Class in net.imglib2.algorithm.region.localneighborhood

A Positionable IterableInterval that serves as a local neighborhood, e.g.

AbstractNeighborhood(int, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood

 

AbstractNeighborhoodCursor<T> - Class in net.imglib2.algorithm.region.localneighborhood

 

AbstractNeighborhoodCursor(AbstractNeighborhood<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor

 

AbstractNumericComposite<T extends NumericType<T>,C extends AbstractNumericComposite<T,C>> - Class in net.imglib2.view.composite

Abstract base class for a vector of NumericType scalars.

AbstractNumericComposite(RandomAccess<T>, int) - Constructor for class net.imglib2.view.composite.AbstractNumericComposite

 

AbstractOutOfBoundsMirror<T> - Class in net.imglib2.outofbounds

Abstract implementation of shared functions for mirroring out of bounds.

AbstractOutOfBoundsMirror(AbstractOutOfBoundsMirror<T>) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsMirror

 

AbstractOutOfBoundsMirror(F) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsMirror

 

AbstractOutOfBoundsValue<T> - Class in net.imglib2.outofbounds

 

AbstractOutOfBoundsValue(AbstractOutOfBoundsValue<T>) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsValue

 

AbstractOutOfBoundsValue(F) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsValue

 

AbstractOwningUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe.owning

 

AbstractOwningUnsafe(UnsafeUtil.OwningUnsafe) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.owning.AbstractOwningUnsafe

 

AbstractPermutationTransform - Class in net.imglib2.transform.integer.permutation

Bijective integer transform mapping between integer coordinates in [0,n-1].

AbstractPermutationTransform(int[]) - Constructor for class net.imglib2.transform.integer.permutation.AbstractPermutationTransform

 

AbstractPositionableTransform<LocalizablePositionable extends Localizable & Positionable> - Class in net.imglib2.position.transform

A RealPositionable that drives a Positionable to somehow derived discrete coordinates.

AbstractPositionableTransform(LocalizablePositionable) - Constructor for class net.imglib2.position.transform.AbstractPositionableTransform

 

AbstractProjector2D - Class in net.imglib2.display.projector

Base class for 2D projectors.

AbstractProjector2D(int) - Constructor for class net.imglib2.display.projector.AbstractProjector2D

initializes a reference point with the specified number of dimensions.

AbstractRealInterval - Class in net.imglib2

Implementation of the RealInterval interface.

AbstractRealInterval(int) - Constructor for class net.imglib2.AbstractRealInterval

Creates an n-dimensional AbstractInterval with min and max = 0ⁿ.

AbstractRealInterval(RealInterval) - Constructor for class net.imglib2.AbstractRealInterval

Creates a new AbstractRealInterval using an existing RealInterval

AbstractRealInterval(double[], double[], boolean) - Constructor for class net.imglib2.AbstractRealInterval

Creates a new AbstractRealInterval from min and max coordinates

AbstractRealInterval(double[], double[]) - Constructor for class net.imglib2.AbstractRealInterval

Creates a new AbstractRealInterval from min and max coordinates

AbstractRealInterval(RealLocalizable, RealLocalizable) - Constructor for class net.imglib2.AbstractRealInterval

Creates a new AbstractRealInterval from min and max coordinates

AbstractRealLocalizable - Class in net.imglib2

An abstract class that implements the RealLocalizable interface using an array of doubles to maintain position

AbstractRealLocalizable(int) - Constructor for class net.imglib2.AbstractRealLocalizable

 

AbstractRealLocalizable(double[]) - Constructor for class net.imglib2.AbstractRealLocalizable

Protected constructor that re-uses the passed position array.

AbstractRealMaskPoint - Class in net.imglib2.roi.util

 

AbstractRealMaskPoint(int) - Constructor for class net.imglib2.roi.util.AbstractRealMaskPoint

 

AbstractRealMaskPoint(double[]) - Constructor for class net.imglib2.roi.util.AbstractRealMaskPoint

 

AbstractRealMaskPoint(RealLocalizable) - Constructor for class net.imglib2.roi.util.AbstractRealMaskPoint

 

AbstractRealTransformSequence<R extends RealTransform> - Class in net.imglib2.realtransform

Shared properties of RealTransformSequence and InvertibleRealTransformSequence, sequences of something that extends RealTransforms.

AbstractRealTransformSequence() - Constructor for class net.imglib2.realtransform.AbstractRealTransformSequence

 

AbstractRealType<T extends AbstractRealType<T>> - Class in net.imglib2.type.numeric.real

TODO

AbstractRealType() - Constructor for class net.imglib2.type.numeric.real.AbstractRealType

 

AbstractRegionOfInterest - Class in net.imglib2.roi

Deprecated.

AbstractRegionOfInterest(int) - Constructor for class net.imglib2.roi.AbstractRegionOfInterest

Deprecated.

 

AbstractRegionOfInterest.AROIRandomAccess - Class in net.imglib2.roi

Deprecated.

The AROIRandomAccess inner class implements the random access part of the ROI, allowing random sampling of pixel membership in the ROI.

AbstractScale - Class in net.imglib2.realtransform

n-d arbitrary scaling.

AbstractScale(double[], RealPoint[]) - Constructor for class net.imglib2.realtransform.AbstractScale

 

AbstractScale(double...) - Constructor for class net.imglib2.realtransform.AbstractScale

 

AbstractShearTransform - Class in net.imglib2.transform.integer.shear

Most simple case of a shear transform that just implements for a integer valued coordinate: coordinate[ shearDimension ] += coordinate[ referenceDimension ] (forward) coordinate[ shearDimension ] -= coordinate[ referenceDimension ] (backward) This abstract class holds the inverse and implements applyInverse in terms of inverse.apply

AbstractShearTransform(int, int, int) - Constructor for class net.imglib2.transform.integer.shear.AbstractShearTransform

 

AbstractShearTransform(int, int, int, AbstractShearTransform) - Constructor for class net.imglib2.transform.integer.shear.AbstractShearTransform

 

AbstractShortArray<A extends AbstractShortArray<A>> - Class in net.imglib2.img.basictypeaccess.array

 

AbstractShortArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractShortArray

 

AbstractShortArray(short[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractShortArray

 

AbstractShortArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractShortArrayIo

 

AbstractStridedUnsafeLongAccess - Class in net.imglib2.img.basictypelongaccess.unsafe

 

AbstractStridedUnsafeLongAccess(int, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.AbstractStridedUnsafeLongAccess

 

AbstractTranslation - Class in net.imglib2.realtransform

n-d translation.

AbstractTranslation(double[], RealPoint[]) - Constructor for class net.imglib2.realtransform.AbstractTranslation

 

AbstractTranslation(int) - Constructor for class net.imglib2.realtransform.AbstractTranslation

 

AbstractTranslation(double...) - Constructor for class net.imglib2.realtransform.AbstractTranslation

 

AbstractUncheckedVolatileCache<K,V> - Interface in net.imglib2.cache.volatiles

 

AbstractUnsafeCursor<T extends NativeLongAccessType<T>> - Class in net.imglib2.img.unsafe

Cursor on an UnsafeImg.

AbstractUnsafeCursor(AbstractUnsafeCursor<T>) - Constructor for class net.imglib2.img.unsafe.AbstractUnsafeCursor

TODO Javadoc

AbstractUnsafeCursor(UnsafeImg<T, ?>, long, long) - Constructor for class net.imglib2.img.unsafe.AbstractUnsafeCursor

TODO Javadoc

AbstractUnsafeLocalizingCursor<T extends NativeLongAccessType<T>> - Class in net.imglib2.img.unsafe

Localizing Cursor on an UnsafeImg.

AbstractUnsafeLocalizingCursor(AbstractUnsafeLocalizingCursor<T>) - Constructor for class net.imglib2.img.unsafe.AbstractUnsafeLocalizingCursor

TODO Javadoc

AbstractUnsafeLocalizingCursor(UnsafeImg<T, ?>, long, long) - Constructor for class net.imglib2.img.unsafe.AbstractUnsafeLocalizingCursor

TODO Javadoc

AbstractVirtualStack - Class in net.imglib2.img.display.imagej

Abstract class to simplify the implementation of an VirtualStack.

AbstractVirtualStack(int, int, int, int) - Constructor for class net.imglib2.img.display.imagej.AbstractVirtualStack

 

AbstractVolatileBooleanArray<A extends AbstractVolatileBooleanArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array

 

AbstractVolatileBooleanArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileBooleanArray

 

AbstractVolatileBooleanArray(boolean[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileBooleanArray

 

AbstractVolatileByteArray<A extends AbstractVolatileByteArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array

 

AbstractVolatileByteArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray

 

AbstractVolatileByteArray(byte[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray

 

AbstractVolatileCache<K,V> - Interface in net.imglib2.cache.volatiles

 

AbstractVolatileCharArray<A extends AbstractVolatileCharArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array

 

AbstractVolatileCharArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray

 

AbstractVolatileCharArray(char[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray

 

AbstractVolatileDoubleArray<A extends AbstractVolatileDoubleArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array

 

AbstractVolatileDoubleArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray

 

AbstractVolatileDoubleArray(double[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray

 

AbstractVolatileFloatArray<A extends AbstractVolatileFloatArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array

 

AbstractVolatileFloatArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray

 

AbstractVolatileFloatArray(float[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray

 

AbstractVolatileIntArray<A extends AbstractVolatileIntArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array

 

AbstractVolatileIntArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray

 

AbstractVolatileIntArray(int[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray

 

AbstractVolatileLongArray<A extends AbstractVolatileLongArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array

 

AbstractVolatileLongArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray

 

AbstractVolatileLongArray(long[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray

 

AbstractVolatileNativeNumericType<N extends NumericType<N> & NativeType<N>,T extends AbstractVolatileNativeNumericType<N,T>> - Class in net.imglib2.type.volatiles

Abstract base class for VolatileNumericTypes that wrap native NumericTypes.

AbstractVolatileNativeNumericType(N, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNativeNumericType

 

AbstractVolatileNativeRealType<R extends RealType<R> & NativeType<R>,T extends AbstractVolatileNativeRealType<R,T>> - Class in net.imglib2.type.volatiles

Abstract base class for VolatileRealTypes that wrap native RealTypes.

AbstractVolatileNativeRealType(R, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNativeRealType

 

AbstractVolatileNumericType<N extends NumericType<N>,T extends AbstractVolatileNumericType<N,T>> - Class in net.imglib2.type.volatiles

Abstract base class for VolatileNumericTypes that wrap a NumericType that is either VALID or INVALID.

AbstractVolatileNumericType(N, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNumericType

 

AbstractVolatileNumericType(N) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNumericType

 

AbstractVolatileRealType<R extends RealType<R>,T extends AbstractVolatileRealType<R,T>> - Class in net.imglib2.type.volatiles

Abstract base class for VolatileRealTypes that wrap RealType.

AbstractVolatileRealType(R, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileRealType

 

AbstractVolatileShortArray<A extends AbstractVolatileShortArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array

 

AbstractVolatileShortArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray

 

AbstractVolatileShortArray(short[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray

 

AbstractWrappedInterval<I extends Interval> - Class in net.imglib2

Convenient base class for IterableIntervals, RandomAccessibleIntervals, etc that forward the Interval interface to, for example, their source accessible.

AbstractWrappedInterval(I) - Constructor for class net.imglib2.AbstractWrappedInterval

 

AbstractWrappedLocalizable<L extends Localizable> - Class in net.imglib2

Convenient base class for accessors etc, that source all Localizable calls to a Localizable source.

AbstractWrappedLocalizable(L) - Constructor for class net.imglib2.AbstractWrappedLocalizable

 

AbstractWrappedPositionableLocalizable<P extends Positionable & Localizable> - Class in net.imglib2

Convenient base class for accessors etc, that source all Localizable and Positionable calls to a Localizable & Positionable source.

AbstractWrappedPositionableLocalizable(P) - Constructor for class net.imglib2.AbstractWrappedPositionableLocalizable

 

AbstractWrappedRealInterval<I extends RealInterval> - Class in net.imglib2

Convenient base class for IterableRealIntervals, etc that forward the RealInterval interface to, for example, their source accessible.

AbstractWrappedRealInterval(I) - Constructor for class net.imglib2.AbstractWrappedRealInterval

 

AbstractWritableBox - Class in net.imglib2.roi.geom.real

Abstract base class for implementations of WritableBox.

AbstractWritableBox(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.AbstractWritableBox

Creates an n-d rectangular RealMask.

AbstractWritableEllipsoid - Class in net.imglib2.roi.geom.real

Abstract base class for WritableEllipsoid implementations.

AbstractWritableEllipsoid(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.AbstractWritableEllipsoid

Creates an n-d ellipsoid, where n is determined by the length of the smaller array.

AbstractWritableSphere - Class in net.imglib2.roi.geom.real

Abstract base class for WritableSphere implementations.

AbstractWritableSphere(double[], double) - Constructor for class net.imglib2.roi.geom.real.AbstractWritableSphere

Creates an n-d sphere.

AbstractWritableSuperEllipsoid - Class in net.imglib2.roi.geom.real

Abstract base class for WritableSuperEllipsoid implementations.

AbstractWritableSuperEllipsoid(double[], double[], double) - Constructor for class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid

Creates an n-d superellipsoid, where n is determined by the length of the smaller array.

acc - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorRealType

 

acc - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType

 

accA - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB

 

accA - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB

 

accB - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB

 

accB - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB

 

accept(RandomAccessibleInterval<S>) - Method in class net.imglib2.algorithm.bspline.BSplineDecomposition

 

accept(T, U) - Method in interface net.imglib2.algorithm.fill.Filter

Deprecated.

 

accept(T) - Method in interface net.imglib2.algorithm.tree.TreeUtils.Consumer

 

accept(long) - Method in class net.imglib2.loops.FastCursorLoops.FiveCursorLoop

 

accept(long) - Method in class net.imglib2.loops.FastCursorLoops.FourCursorLoop

 

accept(long) - Method in class net.imglib2.loops.FastCursorLoops.OneCursorLoop

 

accept(long) - Method in class net.imglib2.loops.FastCursorLoops.SixCursorLoop

 

accept(long) - Method in class net.imglib2.loops.FastCursorLoops.ThreeCursorLoop

 

accept(long) - Method in class net.imglib2.loops.FastCursorLoops.TwoCursorLoop

 

accept(A, B, C, D, E) - Method in interface net.imglib2.loops.LoopBuilder.FiveConsumer

 

accept(A, B, C, D) - Method in interface net.imglib2.loops.LoopBuilder.FourConsumer

 

accept(A, B, C, D, E, F) - Method in interface net.imglib2.loops.LoopBuilder.SixConsumer

 

accept(A, B, C) - Method in interface net.imglib2.loops.LoopBuilder.TriConsumer

 

acceptUnpadded(RandomAccessibleInterval<S>) - Method in class net.imglib2.algorithm.bspline.BSplineDecomposition

Compute coefficients.

accessAxes - Variable in class net.imglib2.view.HyperSlicesView

 

Accesses - Interface in net.imglib2.img.basictypeaccess

Utility and helper methods for accesses (ByteAccess etc).

accessFlags() - Method in class net.imglib2.cache.img.DiskCachedCellImgOptions.Values

 

accessFlags() - Method in class net.imglib2.cache.img.ReadOnlyCachedCellImgOptions.Values

 

AccessFlags - Enum in net.imglib2.img.basictypeaccess

Flags that specify variants of ArrayDataAccess underlying primitive types.

AccessIo<A> - Interface in net.imglib2.cache.img

Serialize/deserialize an access to/from a ByteBuffer.

AccessIo.AbstractByteArrayIo<A extends AbstractByteArray<A>> - Class in net.imglib2.cache.img

 

AccessIo.AbstractCharArrayIo<A extends AbstractCharArray<A>> - Class in net.imglib2.cache.img

 

AccessIo.AbstractDoubleArrayIo<A extends AbstractDoubleArray<A>> - Class in net.imglib2.cache.img

 

AccessIo.AbstractFloatArrayIo<A extends AbstractFloatArray<A>> - Class in net.imglib2.cache.img

 

AccessIo.AbstractIntArrayIo<A extends AbstractIntArray<A>> - Class in net.imglib2.cache.img

 

AccessIo.AbstractLongArrayIo<A extends AbstractLongArray<A>> - Class in net.imglib2.cache.img

 

AccessIo.AbstractShortArrayIo<A extends AbstractShortArray<A>> - Class in net.imglib2.cache.img

 

AccessIo.ByteArrayType - Class in net.imglib2.cache.img

 

AccessIo.CharArrayType - Class in net.imglib2.cache.img

 

AccessIo.DirtyByteArrayType - Class in net.imglib2.cache.img

 

AccessIo.DirtyCharArrayType - Class in net.imglib2.cache.img

 

AccessIo.DirtyDoubleArrayType - Class in net.imglib2.cache.img

 

AccessIo.DirtyFloatArrayType - Class in net.imglib2.cache.img

 

AccessIo.DirtyIntArrayType - Class in net.imglib2.cache.img

 

AccessIo.DirtyLongArrayType - Class in net.imglib2.cache.img

 

AccessIo.DirtyShortArrayType - Class in net.imglib2.cache.img

 

AccessIo.DirtyVolatileByteArrayType - Class in net.imglib2.cache.img

 

AccessIo.DirtyVolatileCharArrayType - Class in net.imglib2.cache.img

 

AccessIo.DirtyVolatileDoubleArrayType - Class in net.imglib2.cache.img

 

AccessIo.DirtyVolatileFloatArrayType - Class in net.imglib2.cache.img

 

AccessIo.DirtyVolatileIntArrayType - Class in net.imglib2.cache.img

 

AccessIo.DirtyVolatileLongArrayType - Class in net.imglib2.cache.img

 

AccessIo.DirtyVolatileShortArrayType - Class in net.imglib2.cache.img

 

AccessIo.DoubleArrayType - Class in net.imglib2.cache.img

 

AccessIo.FloatArrayType - Class in net.imglib2.cache.img

 

AccessIo.IntArrayType - Class in net.imglib2.cache.img

 

AccessIo.LongArrayType - Class in net.imglib2.cache.img

 

AccessIo.ShortArrayType - Class in net.imglib2.cache.img

 

AccessIo.VolatileByteArrayType - Class in net.imglib2.cache.img

 

AccessIo.VolatileCharArrayType - Class in net.imglib2.cache.img

 

AccessIo.VolatileDoubleArrayType - Class in net.imglib2.cache.img

 

AccessIo.VolatileFloatArrayType - Class in net.imglib2.cache.img

 

AccessIo.VolatileIntArrayType - Class in net.imglib2.cache.img

 

AccessIo.VolatileLongArrayType - Class in net.imglib2.cache.img

 

AccessIo.VolatileShortArrayType - Class in net.imglib2.cache.img

 

AccessOptions<T> - Interface in net.imglib2.cache.img.optional

Optional arguments that specify whether accesses should be dirty (default false) volatile (default true)

AccessOptions.Val - Interface in net.imglib2.cache.img.optional

 

accG - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB

 

accG - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB

 

accR - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB

 

accR - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB

 

accumulate(int) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator

 

accumulator - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolator

 

Add - Class in net.imglib2.algorithm.math

 

Add(Object, Object) - Constructor for class net.imglib2.algorithm.math.Add

 

Add(Object...) - Constructor for class net.imglib2.algorithm.math.Add

 

add(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath

 

add(Object...) - Static method in class net.imglib2.algorithm.math.ImgMath

 

add(RandomAccessible<T>, Localizable, long, T) - Static method in class net.imglib2.algorithm.region.Circles

Writes a circle in the target RandomAccessible.

add(RandomAccessible<T>, Localizable, long, int, int, T) - Static method in class net.imglib2.algorithm.region.Circles

Writes a circle in the target RandomAccessible.

add(RandomAccessible<T>, Localizable, long, long, T) - Static method in class net.imglib2.algorithm.region.Ellipses

Writes an ellipse in the target RandomAccessible.

add(RandomAccessible<T>, Localizable, long, long, int, int, T) - Static method in class net.imglib2.algorithm.region.Ellipses

Writes an ellipse in the target RandomAccessible.

add(T1) - Method in class net.imglib2.labeling.LabelingMapping.InternedList

Deprecated.

 

add(int, T1) - Method in class net.imglib2.labeling.LabelingMapping.InternedList

Deprecated.

 

add(Point, T) - Method in class net.imglib2.PointSampleList

 

add(RealPoint, T) - Method in class net.imglib2.RealPointSampleList

 

add(R) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence

Append a RealTransform to the sequence.

add(T) - Method in class net.imglib2.roi.labeling.LabelingType

 

add(Localizable) - Method in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder

Accumulate the given coordinates.

add(BitType) - Method in class net.imglib2.type.logic.BitType

 

add(NativeBoolType) - Method in class net.imglib2.type.logic.NativeBoolType

 

add(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType

 

add(ARGBLongAccessType) - Method in class net.imglib2.type.numeric.ARGBLongAccessType

 

add(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType

 

add(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType

 

add(ComplexFloatLongAccessType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType

 

add(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType

 

add(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType

 

add(T) - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType

 

add(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType

 

add(T) - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType

 

add(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType

 

add(T) - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType

 

add(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType

 

add(T) - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType

 

add(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType

 

add(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType

Relies on BigInteger.add(BigInteger).

add(UnsignedByteLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType

 

add(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType

 

add(UnsignedIntLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType

 

add(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType

 

add(UnsignedLongLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType

 

add(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType

 

add(UnsignedShortLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType

 

add(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType

 

add(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType

 

add(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType

 

add(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType

 

Add<T> - Interface in net.imglib2.type.operators

 

add(T) - Method in interface net.imglib2.type.operators.Add

 

add(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType

 

add(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType

 

add(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers

set c = a + b.

add(double[][], double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers

set C = A + B.

add(double) - Method in class net.imglib2.util.RealSum

Add an element to the sum.

add(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite

 

addAll(Collection<? extends T1>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList

Deprecated.

 

addAll(int, Collection<? extends T1>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList

Deprecated.

 

addAll(Collection<? extends T>) - Method in class net.imglib2.roi.labeling.LabelingType

 

addData(Iterable<T>) - Method in class net.imglib2.histogram.Histogram1d

Counts additional data contained in a given iterable collection.

addData(Iterable<List<T>>) - Method in class net.imglib2.histogram.HistogramNd

Counts additional data contained in a given iterable collection.

addData(List<Iterable<T>>) - Method in class net.imglib2.histogram.HistogramNd

Counts additional data contained in a given iterable collection.

addDeleteHook(Path) - Static method in class net.imglib2.cache.img.DiskCellCache

Register a path for deletion when the virtual machine shuts down.

addDimension(RealRandomAccessible<T>) - Static method in class net.imglib2.realtransform.RealViews

Add a dimension to a RealRandomAccessible.

addDimension(Interval, long, long) - Static method in class net.imglib2.util.Intervals

Create new interval by adding a dimension to the source Interval.

addDimension(RandomAccessible<T>) - Static method in class net.imglib2.view.Views

Create view which adds a dimension to the source RandomAccessible .

addDimension(RandomAccessibleInterval<T>, long, long) - Static method in class net.imglib2.view.Views

Create view which adds a dimension to the source RandomAccessibleInterval.

addDimension(int) - Static method in class net.imglib2.view.ViewTransforms

Returns the transformation that is used by Views.addDimension(RandomAccessible).

addEllipticGaussianSpotToImage(RandomAccessibleInterval<T>, double[]) - Static method in class net.imglib2.algorithm.localization.LocalizationUtils

 

addGaussianNoiseToImage(RandomAccessibleInterval<T>, double) - Static method in class net.imglib2.algorithm.localization.LocalizationUtils

 

addGaussianSpotToImage(RandomAccessibleInterval<T>, double[]) - Static method in class net.imglib2.algorithm.localization.LocalizationUtils

 

Addition<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution

 

Addition(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.Addition

 

addPoint(L) - Method in class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection

 

addPoint(L) - Method in class net.imglib2.roi.geom.real.RealPointSampleListWritableRealPointCollection

 

addPoint(L) - Method in interface net.imglib2.roi.geom.real.WritableRealPointCollection

Adds a point to the collection.

addPosition(Localizable) - Method in interface net.imglib2.algorithm.componenttree.PartialComponent

Add a pixel to the set of pixels represented by this component.

addPosition(Localizable) - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelList

Append a pixel location to the list.

addSlice(String) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack

 

addSlice(String, Object) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack

 

addSlice(String, ImageProcessor) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack

 

addSlice(String, ImageProcessor, int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack

 

addSlice(ImageProcessor) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack

 

addUnsignedShortSlice(String, Object) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack

 

addVertex(int, RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D

If the given vertex has more than 2 dimensions, the higher dimensions will be ignored.

addVertex(int, RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline

 

addVertex(int, double[]) - Method in interface net.imglib2.roi.geom.real.WritablePolygon2D

Deprecated.

Use WritablePolyshape.addVertex(int, RealLocalizable) instead.

addVertex(int, RealLocalizable) - Method in interface net.imglib2.roi.geom.real.WritablePolyshape

Adds a vertex at the given index.

addVertex(int, RealLocalizable) - Method in class net.imglib2.roi.PolygonRegionOfInterest

Deprecated.

Insert a point into the polygon at the given index

addVertices(int, Collection<RealLocalizable>) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D

 

addVertices(int, Collection<RealLocalizable>) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline

 

addVertices(int, Collection<RealLocalizable>) - Method in interface net.imglib2.roi.geom.real.WritablePolyshape

Adds vertices starting at the given index.

affine(RealRandomAccessible<T>, AffineGet) - Static method in class net.imglib2.realtransform.RealViews

See a RealRandomAccessible as a RandomAccessible transformed by an AffineGet.

AffineGet - Interface in net.imglib2.realtransform

An n-dimensional affine transformation whose n×( n+1) affine transformation matrix can be accessed via row and column index.

AffineMatrix2D() - Constructor for class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D

 

AffineMatrix3D() - Constructor for class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

 

AffineMatrix3D(double...) - Constructor for class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

 

AffineRandomAccess() - Constructor for class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

 

AffineRandomAccess(AffineRandomAccessible<T, R>.AffineRandomAccess) - Constructor for class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

 

AffineRandomAccessible<T,R extends AffineGet> - Class in net.imglib2.realtransform

A RandomAccessible whose samples are generated by rasterizing a RealRandomAccessible transformed by an affine transformation.

AffineRandomAccessible(RealRandomAccessible<T>, R) - Constructor for class net.imglib2.realtransform.AffineRandomAccessible

 

AffineRandomAccessible.AffineRandomAccess - Class in net.imglib2.realtransform

RealRandomAccess that generates its samples from a source RealRandomAccessible at coordinates transformed by a RealTransform.

affineReal(RealRandomAccessible<T>, AffineGet) - Static method in class net.imglib2.realtransform.RealViews

See a RealRandomAccessible as transformed by an AffineGet .

AffineRealRandomAccess() - Constructor for class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

 

AffineRealRandomAccessible<T,R extends AffineGet> - Class in net.imglib2.realtransform

A RealRandomAccessible whose samples are generated from a RealRandomAccessible transformed by an affine transformation.

AffineRealRandomAccessible(RealRandomAccessible<T>, R) - Constructor for class net.imglib2.realtransform.AffineRealRandomAccessible

 

AffineRealRandomAccessible.AffineRealRandomAccess - Class in net.imglib2.realtransform

RealRandomAccess that generates its samples from a source RealRandomAccessible at coordinates transformed by a RealTransform.

AffineSet - Interface in net.imglib2.realtransform

An n-dimensional affine transformation whose n×( n+1) affine transformation matrix can be set via row and column index and from double arrays.

AffineTransform - Class in net.imglib2.realtransform

An n-dimensional affine transformation.

AffineTransform(int) - Constructor for class net.imglib2.realtransform.AffineTransform

 

AffineTransform(Matrix, double[]) - Constructor for class net.imglib2.realtransform.AffineTransform

 

AffineTransform(Matrix) - Constructor for class net.imglib2.realtransform.AffineTransform

 

AffineTransform(double...) - Constructor for class net.imglib2.realtransform.AffineTransform

 

AffineTransform(AffineTransform) - Constructor for class net.imglib2.realtransform.AffineTransform

 

AffineTransform2D - Class in net.imglib2.realtransform

2d-affine transformation.

AffineTransform2D() - Constructor for class net.imglib2.realtransform.AffineTransform2D

 

AffineTransform2D(AffineTransform2D.AffineMatrix2D) - Constructor for class net.imglib2.realtransform.AffineTransform2D

 

AffineTransform2D(AffineTransform2D) - Constructor for class net.imglib2.realtransform.AffineTransform2D

 

AffineTransform2D.AffineMatrix2D - Class in net.imglib2.realtransform

 

AffineTransform3D - Class in net.imglib2.realtransform

3d-affine transformation.

AffineTransform3D() - Constructor for class net.imglib2.realtransform.AffineTransform3D

 

AffineTransform3D(AffineTransform3D.AffineMatrix3D) - Constructor for class net.imglib2.realtransform.AffineTransform3D

 

AffineTransform3D(AffineTransform3D) - Constructor for class net.imglib2.realtransform.AffineTransform3D

 

AffineTransform3D.AffineMatrix3D - Class in net.imglib2.realtransform

 

age - Variable in class net.imglib2.algorithm.labeling.Watershed.PixelIntensity

 

Algorithm - Interface in net.imglib2.algorithm

TODO This interface should extend Runnable

AllConnectedComponents - Class in net.imglib2.algorithm.labeling

Deprecated.

AllConnectedComponents() - Constructor for class net.imglib2.algorithm.labeling.AllConnectedComponents

Deprecated.

 

AllConnectedComponents.PositionStack - Class in net.imglib2.algorithm.labeling

Deprecated.

 

allDone - Variable in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor

 

allMask(int) - Static method in class net.imglib2.roi.Masks

Creates a Mask which returns true for all locations.

allMatch(Predicate<T>, List<T>) - Static method in class net.imglib2.loops.ListUtils

 

allMatch(Predicate<T>, T[]) - Static method in class net.imglib2.loops.ListUtils

 

allowedToMoveInDim - Variable in class net.imglib2.algorithm.localextrema.SubpixelLocalization

 

allowMaximaTolerance - Variable in class net.imglib2.algorithm.localextrema.SubpixelLocalization

 

allPositive(long...) - Static method in interface net.imglib2.Dimensions

Check whether all entries in dimensions are positive

allPositive(int...) - Static method in interface net.imglib2.Dimensions

Check whether all entries in dimensions are positive

allRealMask(int) - Static method in class net.imglib2.roi.Masks

Creates a RealMask which returns true for all locations.

ALPHA - Static variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator

 

ALPHA - Static variable in interface net.imglib2.display.ColorTable

 

alpha - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator

 

alpha(int) - Static method in class net.imglib2.type.numeric.ARGBLongAccessType

 

alpha(int) - Static method in class net.imglib2.type.numeric.ARGBType

 

AND(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath

 

AND(Object...) - Static method in class net.imglib2.algorithm.math.ImgMath

 

and(BoundaryType) - Method in enum net.imglib2.roi.BoundaryType

 

AND - Static variable in class net.imglib2.roi.Bounds

 

and(B) - Method in class net.imglib2.roi.Bounds

 

and(RegionOfInterest) - Method in class net.imglib2.roi.CompositeRegionOfInterest

Deprecated.

Make the region the union of the current and this

and(Predicate<? super Localizable>) - Method in interface net.imglib2.roi.Mask

 

and(Predicate<? super Localizable>) - Method in interface net.imglib2.roi.MaskInterval

 

and(Predicate<? super T>) - Method in interface net.imglib2.roi.MaskPredicate

 

and(Mask, Predicate<? super Localizable>) - Static method in class net.imglib2.roi.Masks

 

and(MaskInterval, Predicate<? super Localizable>) - Static method in class net.imglib2.roi.Masks

 

and(RealMask, Predicate<? super RealLocalizable>) - Static method in class net.imglib2.roi.Masks

 

and(RealMaskRealInterval, Predicate<? super RealLocalizable>) - Static method in class net.imglib2.roi.Masks

 

AND - Static variable in class net.imglib2.roi.Operators

 

and(Predicate<? super RealLocalizable>) - Method in interface net.imglib2.roi.RealMask

 

and(Predicate<? super RealLocalizable>) - Method in interface net.imglib2.roi.RealMaskRealInterval

 

and(T) - Method in interface net.imglib2.type.BooleanType

 

and(BitType) - Method in class net.imglib2.type.logic.BitType

 

and(boolean) - Method in class net.imglib2.type.logic.BoolType

 

and(BoolType) - Method in class net.imglib2.type.logic.BoolType

 

and(NativeBoolType) - Method in class net.imglib2.type.logic.NativeBoolType

 

AndLogical - Class in net.imglib2.algorithm.math

 

AndLogical(Object, Object) - Constructor for class net.imglib2.algorithm.math.AndLogical

 

AndLogical(Object...) - Constructor for class net.imglib2.algorithm.math.AndLogical

 

angleFromR(double[][]) - Static method in class net.imglib2.util.LinAlgHelpers

compute the angle of rotation from a rotation matrix.

AngleRegionOfInterest - Class in net.imglib2.roi

Deprecated.

AngleRegionOfInterest() - Constructor for class net.imglib2.roi.AngleRegionOfInterest

Deprecated.

 

AngleRegionOfInterest(double[], double[], double[]) - Constructor for class net.imglib2.roi.AngleRegionOfInterest

Deprecated.

 

anyMatch(Predicate<T>, T[]) - Static method in class net.imglib2.loops.ListUtils

 

append(DiskCachedCellImgOptions) - Method in class net.imglib2.cache.img.DiskCachedCellImgOptions

 

append(ReadOnlyCachedCellImgOptions) - Method in class net.imglib2.cache.img.ReadOnlyCachedCellImgOptions

 

apply(long[]) - Method in class net.imglib2.algorithm.util.Grids.CreateAndCropBlockToFitInterval

 

apply(long[]) - Method in class net.imglib2.algorithm.util.Grids.GetGridCoordinates

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractAffineTransform

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractAffineTransform

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractAffineTransform

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractScale

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractScale

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractScale

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractTranslation

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractTranslation

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractTranslation

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform2D

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform2D

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AffineTransform2D

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform3D

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform3D

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AffineTransform3D

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.DeformationFieldTransform

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.DeformationFieldTransform

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.DeformationFieldTransform

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.HomographyTransform2D

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.HomographyTransform2D

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.HomographyTransform2D

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.InterpolatedRealTransform

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.InterpolatedRealTransform

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.InterpolatedRealTransform

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

Deprecated.

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.InversePerspective3D

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.InversePerspective3D

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.InversePerspective3D

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.InverseRealTransform

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.InverseRealTransform

Deprecated.

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.InverseRealTransform

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.Perspective3D

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.Perspective3D

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Perspective3D

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.PolynomialTransform2D

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.PolynomialTransform2D

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.PolynomialTransform2D

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.PositionFieldTransform

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.PositionFieldTransform

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.PositionFieldTransform

 

apply(double[], double[]) - Method in interface net.imglib2.realtransform.RealTransform

Apply the RealTransform to a source vector to obtain a target vector.

apply(float[], float[]) - Method in interface net.imglib2.realtransform.RealTransform

Deprecated.

use double precision instead

apply(RealLocalizable, RealPositionable) - Method in interface net.imglib2.realtransform.RealTransform

Apply the RealTransform to a source RealLocalizable to obtain a target RealPositionable.

apply() - Method in class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess

 

apply() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.Scale2D

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.Scale2D

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Scale2D

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.Scale3D

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.Scale3D

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Scale3D

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ScaleAndTranslation

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.ThinplateSplineTransform

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ThinplateSplineTransform

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.Translation2D

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.Translation2D

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Translation2D

 

apply(double[], double[]) - Method in class net.imglib2.realtransform.Translation3D

 

apply(float[], float[]) - Method in class net.imglib2.realtransform.Translation3D

 

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Translation3D

 

apply(B, B) - Method in interface net.imglib2.roi.Bounds.BinaryBoundsOperator

 

apply(B) - Method in interface net.imglib2.roi.Bounds.UnaryBoundsOperator

 

apply(Predicate<? super Localizable>, Predicate<? super Localizable>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator

 

apply(Predicate<? super Localizable>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator

 

apply(long[], long[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform

 

apply(int[], int[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform

 

apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.ComponentMappingTransform

 

apply(long[], long[]) - Method in class net.imglib2.transform.integer.MixedTransform

 

apply(int[], int[]) - Method in class net.imglib2.transform.integer.MixedTransform

 

apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.MixedTransform

 

apply(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform

 

apply(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform

 

apply(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform

 

apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform

 

apply(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform

 

apply(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform

 

apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform

 

apply(long[], long[]) - Method in class net.imglib2.transform.integer.SequentializeTransform

 

apply(int[], int[]) - Method in class net.imglib2.transform.integer.SequentializeTransform

 

apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.SequentializeTransform

 

apply(long[], long[]) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform

 

apply(int[], int[]) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform

 

apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform

 

apply(long[], long[]) - Method in class net.imglib2.transform.integer.shear.ShearTransform

 

apply(int[], int[]) - Method in class net.imglib2.transform.integer.shear.ShearTransform

 

apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.shear.ShearTransform

 

apply(long[], long[]) - Method in class net.imglib2.transform.integer.SlicingTransform

 

apply(int[], int[]) - Method in class net.imglib2.transform.integer.SlicingTransform

 

apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.SlicingTransform

 

apply(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform

 

apply(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform

 

apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.TranslationTransform

 

apply(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform

 

apply(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform

 

apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform

 

apply(long[], long[]) - Method in class net.imglib2.transform.InverseTransform

 

apply(int[], int[]) - Method in class net.imglib2.transform.InverseTransform

 

apply(Localizable, Positionable) - Method in class net.imglib2.transform.InverseTransform

 

apply(long[], long[]) - Method in interface net.imglib2.transform.Transform

Apply the Transform to a source vector to obtain a target vector.

apply(int[], int[]) - Method in interface net.imglib2.transform.Transform

Apply the Transform to a source vector to obtain a target vector.

apply(Localizable, Positionable) - Method in interface net.imglib2.transform.Transform

Apply the Transform to a source Localizable to obtain a target Positionable.

applyChecked(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform

 

applyInterval(Predicate<? super Localizable>, Predicate<? super Localizable>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator

 

applyInterval(Predicate<? super Localizable>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AbstractScale

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AbstractScale

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AbstractScale

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AbstractTranslation

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AbstractTranslation

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AbstractTranslation

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AffineTransform

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform2D

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform2D

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AffineTransform2D

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform3D

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform3D

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AffineTransform3D

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.HomographyTransform2D

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.HomographyTransform2D

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.HomographyTransform2D

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.InversePerspective3D

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.InversePerspective3D

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.InversePerspective3D

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.InverseRealTransform

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.InverseRealTransform

Deprecated.

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.InverseRealTransform

 

applyInverse(double[], double[]) - Method in interface net.imglib2.realtransform.InvertibleRealTransform

Apply the inverse transform to a target vector to obtain a source vector.

applyInverse(float[], float[]) - Method in interface net.imglib2.realtransform.InvertibleRealTransform

Deprecated.

Use double precision instead

applyInverse(RealPositionable, RealLocalizable) - Method in interface net.imglib2.realtransform.InvertibleRealTransform

Apply the inverse transform to a target RealLocalizable to obtain a source RealPositionable.

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Perspective3D

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Perspective3D

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Perspective3D

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Scale2D

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Scale2D

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Scale2D

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Scale3D

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Scale3D

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Scale3D

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.ScaleAndTranslation

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Translation2D

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Translation2D

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Translation2D

 

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Translation3D

 

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Translation3D

 

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Translation3D

 

applyInverse(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform

 

applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform

 

applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform

 

applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform

 

applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform

 

applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform

 

applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform

 

applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.SequentializeTransform

 

applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.SequentializeTransform

 

applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.SequentializeTransform

 

applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform

 

applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform

 

applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform

 

applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform

 

applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform

 

applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.TranslationTransform

 

applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform

 

applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform

 

applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform

 

applyInverse(long[], long[]) - Method in class net.imglib2.transform.InverseTransform

 

applyInverse(int[], int[]) - Method in class net.imglib2.transform.InverseTransform

 

applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.InverseTransform

 

applyInverse(long[], long[]) - Method in interface net.imglib2.transform.InvertibleTransform

Apply the inverse transform to a target vector to obtain a source vector.

applyInverse(int[], int[]) - Method in interface net.imglib2.transform.InvertibleTransform

Apply the inverse transform to a target vector to obtain a source vector.

applyInverse(Positionable, Localizable) - Method in interface net.imglib2.transform.InvertibleTransform

Apply the inverse transform to a target Localizable to obtain a source Positionable.

applyInverseChecked(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform

 

applyReal(Predicate<? super RealLocalizable>, Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator

 

applyReal(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.RealTransformMaskOperator

 

applyReal(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator

 

applyRealInterval(Predicate<? super RealLocalizable>, Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator

 

applyRealInterval(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.RealTransformMaskOperator

 

applyRealInterval(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator

 

applyTaskExecutorToThreadFactory(Supplier<TaskExecutor>, ThreadFactory) - Static method in class net.imglib2.parallel.TaskExecutors

Returns a ThreadFactory.

arg0() - Method in interface net.imglib2.roi.composite.BinaryCompositeMaskPredicate

 

arg0() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask

 

arg0() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval

 

arg0() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask

 

arg0() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval

 

arg0() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask

 

arg0() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval

 

arg0() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask

 

arg0() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval

 

arg0() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask

 

arg0() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval

 

arg0() - Method in interface net.imglib2.roi.composite.UnaryCompositeMaskPredicate

 

arg1() - Method in interface net.imglib2.roi.composite.BinaryCompositeMaskPredicate

 

arg1() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask

 

arg1() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval

 

arg1() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask

 

arg1() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval

 

argb(int) - Method in class net.imglib2.display.AbstractArrayColorTable

 

argb(int) - Method in interface net.imglib2.display.ArrayColorTable

Converts the tuple at the given position into a packed ARGB value.

ARGB_COLOR_MODEL - Static variable in class net.imglib2.display.screenimage.awt.ARGBScreenImage

 

ARGBARGBDoubleConverter<T extends AbstractARGBDoubleType<?>> - Class in net.imglib2.converter

 

ARGBARGBDoubleConverter() - Constructor for class net.imglib2.converter.ARGBARGBDoubleConverter

 

argbChannel(RandomAccessibleInterval<ARGBType>, int) - Static method in class net.imglib2.converter.Converters

Create a WriteConvertedRandomAccessibleInterval to one of the four channels encoded in a RandomAccessibleInterval of ARGBType.

argbChannel(RandomAccessible<ARGBType>, int) - Static method in class net.imglib2.converter.Converters

Create a WriteConvertedRandomAccessible to one of the four channels encoded in a RandomAccessible of ARGBType.

argbChannels(RandomAccessibleInterval<ARGBType>) - Static method in class net.imglib2.converter.Converters

Create an (n+1)-dimensional RandomAccessible of an n-dimensional RandomAccessible that maps the four channels encoded in ARGBType into a dimension.

argbChannels(RandomAccessibleInterval<ARGBType>, int...) - Static method in class net.imglib2.converter.Converters

Create an (n+1)-dimensional RandomAccessible of an n-dimensional RandomAccessible that maps the four channels encoded in ARGBType into a dimension.

ARGBChannelSamplerConverter - Class in net.imglib2.converter.readwrite

Access the on channel of an ARGBType as an UnsignedByteType.

ARGBChannelSamplerConverter(int) - Constructor for class net.imglib2.converter.readwrite.ARGBChannelSamplerConverter

 

ARGBConverter - Class in net.imglib2.converter.longaccess

 

ARGBConverter() - Constructor for class net.imglib2.converter.longaccess.ARGBConverter

 

ARGBDoubleARGBConverter<T extends AbstractARGBDoubleType<?>> - Class in net.imglib2.converter

 

ARGBDoubleARGBConverter() - Constructor for class net.imglib2.converter.ARGBDoubleARGBConverter

 

ARGBDoubleType - Class in net.imglib2.type.numeric

 

ARGBDoubleType() - Constructor for class net.imglib2.type.numeric.ARGBDoubleType

 

ARGBDoubleType(double, double, double, double) - Constructor for class net.imglib2.type.numeric.ARGBDoubleType

 

ARGBLongAccessType - Class in net.imglib2.type.numeric

 

ARGBLongAccessType(NativeLongAccessImg<?, ? extends IntLongAccess>) - Constructor for class net.imglib2.type.numeric.ARGBLongAccessType

 

ARGBLongAccessType(int) - Constructor for class net.imglib2.type.numeric.ARGBLongAccessType

 

ARGBLongAccessType(IntLongAccess) - Constructor for class net.imglib2.type.numeric.ARGBLongAccessType

 

ARGBLongAccessType() - Constructor for class net.imglib2.type.numeric.ARGBLongAccessType

 

ARGBLongAccessTypeARGBTypeConverter - Class in net.imglib2.converter.readwrite.longaccess

 

ARGBLongAccessTypeARGBTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.ARGBLongAccessTypeARGBTypeConverter

 

ARGBLongAccessTypeARGBTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess

 

argbs(long...) - Static method in class net.imglib2.img.array.ArrayImgs

Create an ArrayImg<ARGBType, IntArray>.

argbs(int[], long...) - Static method in class net.imglib2.img.array.ArrayImgs

Creates an ArrayImg<ARGBType, IntArray> reusing a passed int[] array.

argbs(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs

Creates an ArrayImg<ARGBType, IntAccess> using a IntAccess passed as argument.

argbs(long...) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs

Create an IntImagePlus<ARGBType>.

argbs(long...) - Static method in class net.imglib2.img.planar.PlanarImgs

Create an PlanarImg<ARGBType, IntArray>.

argbs(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs

Create an UnsafeImg<ARGBType, IntArray>.

argbs(IntLongAccess, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs

Creates an UnsafeImg<ARGBType, IntArray> reusing a passed int[] array.

ARGBScreenImage - Class in net.imglib2.display.screenimage.awt

 

ARGBScreenImage(int, int) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage

 

ARGBScreenImage(int, int, IntArray) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage

Create an Image with data.

ARGBScreenImage(int, int, int[]) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage

Create an Image with data.

ARGBType - Class in net.imglib2.type.numeric

A native NumericType that encodes four channels at unsigned byte precision into one 32bit signed integer which is the format used in most display oriented image processing libraries such as AWT or ImageJ.

ARGBType(NativeImg<?, ? extends IntAccess>) - Constructor for class net.imglib2.type.numeric.ARGBType

 

ARGBType(int) - Constructor for class net.imglib2.type.numeric.ARGBType

 

ARGBType(IntAccess) - Constructor for class net.imglib2.type.numeric.ARGBType

 

ARGBType() - Constructor for class net.imglib2.type.numeric.ARGBType

 

armijoCondition(double, double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

Returns true if the armijo condition is satisfied.

AROIClippedIterableInterval(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval

Deprecated.

 

AROICursor(AbstractIterableRegionOfInterest.AROIIterableInterval<T>.AROICursor) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor

Deprecated.

 

AROICursor() - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor

Deprecated.

 

AROIIterableInterval(RandomAccessible<T>) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval

Deprecated.

 

AROIIterationOrder() - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterationOrder

Deprecated.

 

AROIRandomAccess(AbstractRegionOfInterest.AROIRandomAccess) - Constructor for class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess

Deprecated.

 

AROIRandomAccess() - Constructor for class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess

Deprecated.

 

ArrayColorTable<T> - Interface in net.imglib2.display

Interface for all ColorTable implementations that use an array to store their color table information.

ArrayCursor<T extends NativeType<T>> - Class in net.imglib2.img.array

Cursor on an ArrayImg.

ArrayCursor(ArrayCursor<T>) - Constructor for class net.imglib2.img.array.ArrayCursor

 

ArrayCursor(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayCursor

 

ArrayDataAccess<A> - Interface in net.imglib2.img.basictypeaccess.array

Trivial interface for primitive array based data access implementations that can replicate themselves and return the underlying array.

ArrayDataAccessFactory - Class in net.imglib2.img.basictypeaccess

Given a PrimitiveType and AccessFlags creates a specific ArrayDataAccess.

ArrayDataAccessFactory() - Constructor for class net.imglib2.img.basictypeaccess.ArrayDataAccessFactory

 

ArrayImg<T extends NativeType<T>,A> - Class in net.imglib2.img.array

This Img stores an image in a single linear array of basic types.

ArrayImg(A, long[], Fraction) - Constructor for class net.imglib2.img.array.ArrayImg

 

ArrayImgAWTScreenImage<T extends NativeType<T>,A> - Class in net.imglib2.display.screenimage.awt

An AWTScreenImage that is an ArrayImg.

ArrayImgAWTScreenImage(ArrayImg<T, A>) - Constructor for class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage

 

ArrayImgAWTScreenImage(T, A, long[]) - Constructor for class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage

 

ArrayImgFactory<T extends NativeType<T>> - Class in net.imglib2.img.array

Factory for ArrayImgs.

ArrayImgFactory(T) - Constructor for class net.imglib2.img.array.ArrayImgFactory

 

ArrayImgFactory() - Constructor for class net.imglib2.img.array.ArrayImgFactory

Deprecated.

ArrayImgs - Class in net.imglib2.img.array

Convenience factory methods for creation of ArrayImg instances with the most common pixel Type variants.

ArrayImgToVirtualStack - Class in net.imglib2.img.display.imagej

 

ArrayImgXYByteProjector<A extends GenericByteType<A>> - Class in net.imglib2.display.projector.specialized

Fast implementation of a AbstractProjector2D that selects a 2D data plain from an ByteType ArrayImg.

ArrayImgXYByteProjector(ArrayImg<A, ByteArray>, ArrayImg<UnsignedByteType, ByteArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.ArrayImgXYByteProjector

Normalizes an ArrayImg and writes the result into target.

ArrayImgXYShortProjector<A extends GenericShortType<A>> - Class in net.imglib2.display.projector.specialized

Fast implementation of a AbstractProjector2D that selects a 2D data plain from an ShortType ArrayImg.

ArrayImgXYShortProjector(ArrayImg<A, ShortArray>, ArrayImg<UnsignedShortType, ShortArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.ArrayImgXYShortProjector

Normalizes an ArrayImg and writes the result into target.

ArrayLocalizingCursor<T extends NativeType<T>> - Class in net.imglib2.img.array

Localizing Cursor on an ArrayImg.

ArrayLocalizingCursor(ArrayLocalizingCursor<T>) - Constructor for class net.imglib2.img.array.ArrayLocalizingCursor

TODO Javadoc

ArrayLocalizingCursor(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayLocalizingCursor

TODO Javadoc

ArrayLocalizingSubIntervalCursor<T extends NativeType<T>> - Class in net.imglib2.img.array

Localizing AbstractArrayLocalizingCursor on an ArrayImg.

ArrayLocalizingSubIntervalCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor

TODO Javadoc

ArrayLocalizingSubIntervalCursor(ArrayLocalizingSubIntervalCursor<T>) - Constructor for class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor

TODO Javadoc

ArrayRandomAccess<T extends NativeType<T>> - Class in net.imglib2.img.array

RandomAccess on an ArrayImg.

ArrayRandomAccess(ArrayRandomAccess<T>) - Constructor for class net.imglib2.img.array.ArrayRandomAccess

 

ArrayRandomAccess(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayRandomAccess

 

ArraySubIntervalCursor<T extends NativeType<T>> - Class in net.imglib2.img.array

Cursor on an ArrayImg.

ArraySubIntervalCursor(ArraySubIntervalCursor<T>) - Constructor for class net.imglib2.img.array.ArraySubIntervalCursor

TODO Javadoc

ArraySubIntervalCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.ArraySubIntervalCursor

TODO Javadoc

asArrayAccess(long, int, boolean, PrimitiveType) - Static method in interface net.imglib2.img.basictypeaccess.Accesses

 

asByteArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses

 

asCharArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses

 

asDoubleArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses

 

asDoubleArray(Iterable<? extends RealType<?>>) - Static method in class net.imglib2.util.Util

Returns the content of Iterable<RealType> as array of doubles.

asDoubleArray(RandomAccessibleInterval<? extends RealType<?>>) - Static method in class net.imglib2.util.Util

Returns the pixels of an RandomAccessibleInterval of RealType as array of doubles.

asDoubleArray(Img<? extends RealType<?>>) - Static method in class net.imglib2.util.Util

Returns the pixels of an image of RealType as array of doubles.

asFloatArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses

 

asIntArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses

 

asLongArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses

 

asLongArray(Localizable) - Static method in class net.imglib2.util.Localizables

Deprecated.

Use Localizable.positionAsLongArray().

assertImageEquals(RandomAccessibleInterval<? extends A>, RandomAccessibleInterval<? extends B>) - Static method in class net.imglib2.test.ImgLib2Assert

Throws an AssertionError, if the content or intervals of the two images differ.

assertImageEquals(RandomAccessibleInterval<? extends A>, RandomAccessibleInterval<? extends B>, BiPredicate<A, B>) - Static method in class net.imglib2.test.ImgLib2Assert

Throws an AssertionError, if the content or intervals of the two images differ.

assertImageEqualsIntegerType(RandomAccessibleInterval<? extends IntegerType<?>>, RandomAccessibleInterval<? extends IntegerType<?>>) - Static method in class net.imglib2.test.ImgLib2Assert

Throws an AssertionError, if the content or intervals of the two images differ.

assertImageEqualsRealType(RandomAccessibleInterval<? extends RealType<?>>, RandomAccessibleInterval<? extends RealType<?>>, double) - Static method in class net.imglib2.test.ImgLib2Assert

Throws an AssertionError, if the content or intervals of the two images differ.

assertIntervalEquals(Interval, Interval) - Static method in class net.imglib2.test.ImgLib2Assert

Throws an AssertionError, if the two Intervals differ.

assertIntervalEquals(RealInterval, RealInterval, double) - Static method in class net.imglib2.test.ImgLib2Assert

 

asShortArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses

 

asymmetric(double[], int) - Static method in class net.imglib2.algorithm.convolution.kernel.Kernel1D

Creates a one-dimensional asymmetric convolution kernel.

asymmetric(double[][], int[]) - Static method in class net.imglib2.algorithm.convolution.kernel.Kernel1D

Similar to Kernel1D.asymmetric(double[], int) but creates an array of one-dimensional convolution kernels.

ATrinaryFunction - Class in net.imglib2.algorithm.math.abstractions

 

ATrinaryFunction(Object, Object, Object) - Constructor for class net.imglib2.algorithm.math.abstractions.ATrinaryFunction

 

AUnaryFunction - Class in net.imglib2.algorithm.math.abstractions

 

AUnaryFunction(Object) - Constructor for class net.imglib2.algorithm.math.abstractions.AUnaryFunction

 

average(float[]) - Static method in class net.imglib2.util.Util

 

average(double[]) - Static method in class net.imglib2.util.Util

 

averageDouble(List<Double>) - Static method in class net.imglib2.util.Util

 

averageFloat(List<Float>) - Static method in class net.imglib2.util.Util

 

awaitTermination(long, TimeUnit) - Method in class net.imglib2.parallel.ForkJoinExecutorService

 

awaitTermination(long, TimeUnit) - Method in class net.imglib2.parallel.SequentialExecutorService

 

AWTScreenImage - Interface in net.imglib2.display.screenimage.awt

A ScreenImage that produces AWT Image objects.

AWTScreenImageUtil - Class in net.imglib2.display.screenimage.awt

Utility class to create AWTScreenImages.

AWTScreenImageUtil() - Constructor for class net.imglib2.display.screenimage.awt.AWTScreenImageUtil

 

axes - Variable in class net.imglib2.view.HyperSlice

 

axisFromR(double[][], double[]) - Static method in class net.imglib2.util.LinAlgHelpers

compute the axis of rotation from a rotation matrix.

B

b - Variable in class net.imglib2.algorithm.math.abstractions.ABinaryFunction

 

b - Variable in class net.imglib2.algorithm.math.abstractions.ATrinaryFunction

 

b - Variable in class net.imglib2.algorithm.math.execution.Comparison

 

b - Variable in class net.imglib2.type.numeric.ARGBDoubleType

 

b - Variable in class net.imglib2.util.ValuePair

 

b - Variable in class net.imglib2.view.RandomAccessiblePair.RandomAccess

 

background - Variable in class net.imglib2.converter.VolatileRealTypeARGBConverter

 

BacktrackingLineSearch - Class in net.imglib2.realtransform.inverse

A generic backtracking line search to iteratively estimate the inverse of a RealTransform.

BacktrackingLineSearch(int) - Constructor for class net.imglib2.realtransform.inverse.BacktrackingLineSearch

 

BacktrackingLineSearch(DifferentiableRealTransform) - Constructor for class net.imglib2.realtransform.inverse.BacktrackingLineSearch

 

backtrackingLineSearch(double, double, int, double) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

Perform backtracking line search.

backtrackingLineSearch(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

Uses Backtracking Line search to determine a step size.

backtrackingLineSearch(double, double, int, double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

Uses Backtracking Line search to determine a step size.

Bandpass<T extends NumericType<T>> - Class in net.imglib2.algorithm.fft

Deprecated.

use FFT instead

Bandpass(RandomAccessibleInterval<T>, int, int, ImgFactory<T>) - Constructor for class net.imglib2.algorithm.fft.Bandpass

Deprecated.

 

Bandpass(Img<T>, int, int) - Constructor for class net.imglib2.algorithm.fft.Bandpass

Deprecated.

 

BasePairBitType - Class in net.imglib2.type.label

Representation of base pairs using 3 bits per entry, supported characters: gap, N, A, T, G, C, U Bases are handled using the BasePairBitType.Base enumeration.

BasePairBitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.label.BasePairBitType

 

BasePairBitType(BasePairBitType.Base) - Constructor for class net.imglib2.type.label.BasePairBitType

 

BasePairBitType() - Constructor for class net.imglib2.type.label.BasePairBitType

 

BasePairBitType.Base - Enum in net.imglib2.type.label

 

BasePairCharType - Class in net.imglib2.type.label

Representation of base pairs using one char per entry, supported characters: gap, N, A, T, G, C, U Bases are handled using the BasePairBitType.Base enumeration.

BasePairCharType(NativeImg<?, ? extends CharAccess>) - Constructor for class net.imglib2.type.label.BasePairCharType

 

BasePairCharType(BasePairBitType.Base) - Constructor for class net.imglib2.type.label.BasePairCharType

 

BasePairCharType(char) - Constructor for class net.imglib2.type.label.BasePairCharType

 

BasePairCharType() - Constructor for class net.imglib2.type.label.BasePairCharType

 

BasePairType<T extends BasePairType<T>> - Interface in net.imglib2.type

TODO

baseToValue() - Method in interface net.imglib2.type.BasePairType

 

baseToValue() - Method in class net.imglib2.type.label.BasePairBitType

 

baseToValue() - Method in class net.imglib2.type.label.BasePairCharType

 

bck(int) - Method in class net.imglib2.AbstractWrappedPositionableLocalizable

 

bck(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess

 

bck(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess

 

bck(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess

 

bck(int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess

 

bck(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess

 

bck(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess

 

bck(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess

 

bck(int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood

 

bck(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess

 

bck(int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess

 

bck(int) - Method in class net.imglib2.converter.read.BiConvertedRandomAccess

 

bck(int) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess

 

bck(int) - Method in class net.imglib2.img.array.ArrayRandomAccess

 

bck(int) - Method in class net.imglib2.img.cell.CellRandomAccess

 

bck(int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess

 

bck(int) - Method in class net.imglib2.img.list.ListRandomAccess

 

bck(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess

 

bck(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D

 

bck(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess

 

bck(int) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess

 

bck(int) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator

 

bck(int) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator

 

bck(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue

 

bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder

 

bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary

 

bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary

 

bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic

 

bck(int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess

 

bck(int) - Method in class net.imglib2.Point

 

bck(int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform

 

bck(int) - Method in interface net.imglib2.Positionable

Move by -1 in one dimension.

bck(int) - Method in class net.imglib2.RealPoint

 

bck(int) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

 

bck(int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

 

bck(int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

 

bck(int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess

Deprecated.

 

bck(int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess

 

bck(int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint

 

bck(int) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable

 

bck(int) - Method in class net.imglib2.roi.util.PositionableInterval

 

bck(int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper

 

bck(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess

 

bck(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess

 

bck(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess

 

bck(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess

 

bck(int) - Method in class net.imglib2.view.MixedRandomAccess

 

bck(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible

 

bck(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess

 

bck(int) - Method in class net.imglib2.view.SlicingRandomAccess

 

bck(int) - Method in class net.imglib2.view.StackView.DefaultRA

 

bck(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA

 

bck(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess

 

bck(int) - Method in class net.imglib2.view.TransformRandomAccess

 

bck(int) - Method in class net.imglib2.view.TranslationRandomAccess

 

bckDim0() - Method in class net.imglib2.img.array.ArrayRandomAccess

Moves one step backward in dimension 0

bckDim0() - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess

Moves one step backward in dimension 0

beforeMin - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder

 

beforeMin - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic

 

Benchmark - Interface in net.imglib2.algorithm

TODO

benchmark(int, Runnable) - Static method in class net.imglib2.util.BenchmarkHelper

Run a benchmark numRuns times and record the milliseconds taken for each run.

BenchmarkAlgorithm - Class in net.imglib2.algorithm

This is a convenience implementation of an algorithm that implements Benchmark and Algorithm so that less code has to be re-implemented.

BenchmarkAlgorithm() - Constructor for class net.imglib2.algorithm.BenchmarkAlgorithm

 

benchmarkAndPrint(int, boolean, Runnable) - Static method in class net.imglib2.util.BenchmarkHelper

Run a benchmark numRuns times and print the results to System.out .

BenchmarkHelper - Class in net.imglib2.util

Tools for setting up basic benchmarks.

BenchmarkHelper() - Constructor for class net.imglib2.util.BenchmarkHelper

 

bestPoint - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree

 

bestPoints - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree

 

bestSquDistance - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree

 

bestSquDistances - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree

 

BiConvertedCursor<A,B,C extends Type<C>> - Class in net.imglib2.converter.read

TODO

BiConvertedCursor(Cursor<A>, Cursor<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedCursor

Creates a copy of c for conversion that can be accessed through BiConvertedCursor.get().

BiConvertedCursor(Cursor<A>, Cursor<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedCursor

Creates a copy of c for conversion that can be accessed through BiConvertedCursor.get().

BiConvertedIterableInterval<A,B,C extends Type<C>> - Class in net.imglib2.converter.read

TODO

BiConvertedIterableInterval(IterableInterval<A>, IterableInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedIterableInterval

Creates a copy of c for conversion.

BiConvertedIterableInterval(IterableInterval<A>, IterableInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedIterableInterval

Creates a copy of c for conversion.

BiConvertedIterableRealInterval<A,B,C extends Type<C>> - Class in net.imglib2.converter.read

TODO

BiConvertedIterableRealInterval(IterableRealInterval<A>, IterableRealInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedIterableRealInterval

Creates a copy of c for conversion.

BiConvertedIterableRealInterval(IterableRealInterval<A>, IterableRealInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedIterableRealInterval

Creates a copy of c for conversion.

BiConvertedRandomAccess<A,B,C extends Type<C>> - Class in net.imglib2.converter.read

TODO

BiConvertedRandomAccess(RandomAccess<A>, RandomAccess<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccess

 

BiConvertedRandomAccess(RandomAccess<A>, RandomAccess<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccess

 

BiConvertedRandomAccessible<A,B,C extends Type<C>> - Class in net.imglib2.converter.read

TODO

BiConvertedRandomAccessible(RandomAccessible<A>, RandomAccessible<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccessible

 

BiConvertedRandomAccessible(RandomAccessible<A>, RandomAccessible<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccessible

 

BiConvertedRandomAccessibleInterval<A,B,C extends Type<C>> - Class in net.imglib2.converter.read

TODO

BiConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccessibleInterval

 

BiConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccessibleInterval

 

BiConvertedRealCursor<A,B,C extends Type<C>> - Class in net.imglib2.converter.read

TODO

BiConvertedRealCursor(RealCursor<A>, RealCursor<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealCursor

Creates a copy of c for conversion that can be accessed through BiConvertedRealCursor.get().

BiConvertedRealCursor(RealCursor<A>, RealCursor<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealCursor

Creates a copy of c for conversion that can be accessed through BiConvertedRealCursor.get().

BiConvertedRealRandomAccess<A,B,C extends Type<C>> - Class in net.imglib2.converter.read

TODO

BiConvertedRealRandomAccess(RealRandomAccess<A>, RealRandomAccess<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccess

 

BiConvertedRealRandomAccess(RealRandomAccess<A>, RealRandomAccess<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccess

 

BiConvertedRealRandomAccessible<A,B,C extends Type<C>> - Class in net.imglib2.converter.read

TODO

BiConvertedRealRandomAccessible(RealRandomAccessible<A>, RealRandomAccessible<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccessible

 

BiConvertedRealRandomAccessible(RealRandomAccessible<A>, RealRandomAccessible<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccessible

 

BiConvertedRealRandomAccessibleRealInterval<A,B,C extends Type<C>> - Class in net.imglib2.converter.read

TODO

BiConvertedRealRandomAccessibleRealInterval(RealRandomAccessibleRealInterval<A>, RealRandomAccessibleRealInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccessibleRealInterval

 

BiConvertedRealRandomAccessibleRealInterval(RealRandomAccessibleRealInterval<A>, RealRandomAccessibleRealInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccessibleRealInterval

 

BiConverter<A,B,C> - Interface in net.imglib2.converter

This interface would be a TriConsumer if such an interface existed in the JDK.

bigIntegerCollection(IterableInterval<? extends IntegerType<?>>) - Static method in class net.imglib2.util.FlatCollections

Wraps an IntegerType iterable image as a collection.

bigIntegerList(RandomAccessibleInterval<? extends IntegerType<?>>) - Static method in class net.imglib2.util.FlatCollections

Wraps a IntegerType random-accessible image as a list.

BinaryCompositeMaskPredicate<T> - Interface in net.imglib2.roi.composite

A CompositeMaskPredicate with a binary operator and two operands.

BinaryMaskOperator(BinaryOperator<BoundaryType>, Bounds.BinaryBoundsOperator, BinaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.Operators.BinaryMaskOperator

 

BinaryMaskRegionOfInterest<T extends BitType,I extends RandomAccessibleInterval<T>> - Class in net.imglib2.roi

Deprecated.

BinaryMaskRegionOfInterest(I) - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest

Deprecated.

 

BinaryMaskRegionOfInterest.BMROIIterableInterval<TT extends Type<TT>> - Class in net.imglib2.roi

Deprecated.

 

BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor - Class in net.imglib2.roi

Deprecated.

The cursor works by managing a cursor from the original image.

BinaryMaskRegionOfInterest.BMROIIterationOrder - Class in net.imglib2.roi

Deprecated.

 

binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, DistanceTransform.DISTANCE_TYPE, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform

Create binary distance transform on source using squared Euclidian (L2) or L1 distance.

binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, DistanceTransform.DISTANCE_TYPE, ExecutorService, int, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform

Create binary distance transform on source using squared Euclidian (L2) or L1 distance.

binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, RandomAccessibleInterval<V>, DistanceTransform.DISTANCE_TYPE, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform

Create binary distance transform on source using squared Euclidian (L2) or L1 distance.

binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, RandomAccessibleInterval<V>, DistanceTransform.DISTANCE_TYPE, ExecutorService, int, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform

Create binary distance transform on source using squared Euclidian (L2) or L1 distance.

binaryTransform(RandomAccessibleInterval<B>, Distance, ExecutorService, int) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform

Create binary distance transform on source using arbitrary Distance d.

binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, Distance) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform

Create binary distance transform on source using arbitrary Distance d.

binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, Distance, ExecutorService, int) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform

Create binary distance transform on source using arbitrary Distance d.

binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, RandomAccessibleInterval<V>, Distance) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform

Create binary distance transform on source using arbitrary Distance d.

binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, RandomAccessibleInterval<V>, Distance, ExecutorService, int) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform

Create binary distance transform on source using arbitrary Distance d.

BinMapper1d<T> - Interface in net.imglib2.histogram

An interface for defining a bin mapping algorithm.

Binning - Class in net.imglib2.util

Static utility methods to convert from a value to a bin, useful for dealing with histograms and LUTs.

Binning() - Constructor for class net.imglib2.util.Binning

 

bits(long...) - Static method in class net.imglib2.img.array.ArrayImgs

Create an ArrayImg<BitType, LongArray>.

bits(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs

Deprecated.

use ArrayImgs.booleans(BooleanAccess, long...)

bits(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs

Creates an ArrayImg<BitType, LongAccess> using a LongAccess passed as argument.

bits(long...) - Static method in class net.imglib2.img.planar.PlanarImgs

Create an PlanarImg<BitType, LongArray>.

BitType - Class in net.imglib2.type.logic

TODO

BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.logic.BitType

 

BitType(boolean) - Constructor for class net.imglib2.type.logic.BitType

 

BitType(LongAccess) - Constructor for class net.imglib2.type.logic.BitType

 

BitType() - Constructor for class net.imglib2.type.logic.BitType

 

BlackTopHat - Class in net.imglib2.algorithm.morphology

Black top-hat (bottom-hat) transform for ImgLib2.

blackTopHat(Img<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat

Performs the black top-hat (or bottom-hat) morphological operation, on a RealType Img using a list of Shapes as a flat structuring element.

blackTopHat(Img<T>, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat

Performs the black top-hat (or bottom-hat) morphological operation, using a list of Shapes as a flat structuring element.

blackTopHat(Img<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat

Performs the black top-hat (or bottom-hat) morphological operation, on a RealType Img using a Shape as a flat structuring element.

blackTopHat(Img<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat

Performs the black top-hat (or bottom-hat) morphological operation, using a Shape as a flat structuring element.

blackTopHat(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat

Performs the black top-hat (or bottom-hat) morphological operation on a RealType source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.

blackTopHat(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat

Performs the black top-hat (or bottom-hat) morphological operation on a source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.

blackTopHat(RandomAccessible<T>, IterableInterval<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat

Performs the black top-hat (or bottom-hat) morphological operation on a RealType source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.

blackTopHat(RandomAccessible<T>, IterableInterval<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat

Performs the black top-hat (or bottom-hat) morphological operation on a source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.

blackTopHatInPlace(RandomAccessible<T>, Interval, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat

Performs the black top-hat (or bottom-hat) morphological operation, on a RealType Img using a list of Shapes as a flat structuring element.

blackTopHatInPlace(RandomAccessible<T>, Interval, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat

Performs the black top-hat (or bottom-hat) morphological operation, using a list of Shapes as a flat structuring element.

blackTopHatInPlace(RandomAccessible<T>, Interval, Shape, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat

Performs the black top-hat (or bottom-hat) morphological operation, on a RealType Img using a Shape as a flat structuring element.

blackTopHatInPlace(RandomAccessible<T>, Interval, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat

Performs the black top-hat (or bottom-hat) morphological operation, using a Shape as a flat structuring element.

block(RandomAccessible<T>, long[]) - Static method in class net.imglib2.algorithm.math.ImgMath

 

block(RandomAccessible<T>, long) - Static method in class net.imglib2.algorithm.math.ImgMath

 

block(RandomAccessible<T>, long[][]) - Static method in class net.imglib2.algorithm.math.ImgMath

 

BlockingFetchQueues<E> - Class in net.imglib2.cache.queue

TODO revise javadoc Queueing structure (intended for cache entries to be fetched).

BlockingFetchQueues(int, int) - Constructor for class net.imglib2.cache.queue.BlockingFetchQueues

 

BlockingFetchQueues(int, int, int) - Constructor for class net.imglib2.cache.queue.BlockingFetchQueues

 

BlockReadingDirect<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution

 

BlockReadingDirect(O, RandomAccessible<O>, long[][], byte[]) - Constructor for class net.imglib2.algorithm.math.execution.BlockReadingDirect

 

BlockReadingSource<I extends RealType<I>,O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution

 

BlockReadingSource(O, Converter<RealType<?>, O>, RandomAccessible<I>, long[][], byte[]) - Constructor for class net.imglib2.algorithm.math.execution.BlockReadingSource

 

BlockReadSource<I extends RealType<I>> - Class in net.imglib2.algorithm.math

Intended for reading cuboid blocks out of an integral image.

BlockReadSource(RandomAccessible<I>, long[]) - Constructor for class net.imglib2.algorithm.math.BlockReadSource

A block centered on a particular pixel.

BlockReadSource(RandomAccessible<I>, long) - Constructor for class net.imglib2.algorithm.math.BlockReadSource

A block centered on a particular pixel.

BlockReadSource(RandomAccessible<I>, long[][]) - Constructor for class net.imglib2.algorithm.math.BlockReadSource

 

blockSize - Variable in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory

 

BLUE - Static variable in interface net.imglib2.display.ColorTable

 

blue(int) - Static method in class net.imglib2.type.numeric.ARGBLongAccessType

 

blue(int) - Static method in class net.imglib2.type.numeric.ARGBType

 

BMROICursor() - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor

Deprecated.

 

BMROIIterableInterval(RandomAccess<TT>) - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval

Deprecated.

 

BMROIIterationOrder() - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterationOrder

Deprecated.

 

BOOLEAN(Function<NativeImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeTypeFactory

 

BooleanAccess - Interface in net.imglib2.img.basictypeaccess

TODO

BooleanArray - Class in net.imglib2.img.basictypeaccess.array

 

BooleanArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.BooleanArray

 

BooleanArray(boolean[]) - Constructor for class net.imglib2.img.basictypeaccess.array.BooleanArray

 

booleanCollection(IterableInterval<? extends BooleanType<?>>) - Static method in class net.imglib2.util.FlatCollections

Wraps a BooleanType iterable image as a collection.

booleanList(RandomAccessibleInterval<? extends BooleanType<?>>) - Static method in class net.imglib2.util.FlatCollections

Wraps a BooleanType random-accessible image as a list.

BooleanNtree - Class in net.imglib2.img.sparse

BitAccess based on a Ntree.

BooleanNtree(long[], long[], boolean) - Constructor for class net.imglib2.img.sparse.BooleanNtree

 

booleans(long...) - Static method in class net.imglib2.img.array.ArrayImgs

Create an ArrayImg<NativeBoolType, BooleanArray>.

booleans(boolean[], long...) - Static method in class net.imglib2.img.array.ArrayImgs

Creates an ArrayImg<NativeBoolType, BooleanArray> reusing a passed byte[] array.

booleans(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs

Creates an ArrayImg<NativeBoolType, BooleanAccess> using a BooleanAccess passed as argument.

booleans(long...) - Static method in class net.imglib2.img.planar.PlanarImgs

Create an PlanarImg<NativeBoolType, BooleanArray>.

BooleanType<T extends BooleanType<T>> - Interface in net.imglib2.type

TODO

BoolType - Class in net.imglib2.type.logic

A BooleanType wrapping a single primitive boolean variable.

BoolType() - Constructor for class net.imglib2.type.logic.BoolType

 

BoolType(boolean) - Constructor for class net.imglib2.type.logic.BoolType

 

BoolType(T) - Constructor for class net.imglib2.type.logic.BoolType

 

boundary - Variable in class net.imglib2.outofbounds.OutOfBoundsMirrorFactory

 

Boundary<T extends BooleanType<T>> - Class in net.imglib2.roi.boundary

An IterableRegion of the boundary pixels of a source boolean RandomAccessibleInterval.

Boundary(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.boundary.Boundary

 

Boundary(RandomAccessibleInterval<T>, Boundary.StructuringElement) - Constructor for class net.imglib2.roi.boundary.Boundary

 

Boundary.StructuringElement - Enum in net.imglib2.roi.boundary

 

BoundaryRandomAccess4<T extends BooleanType<T>> - Class in net.imglib2.roi.boundary

A BoolType RandomAccess on a BooleanType source RandomAccessibleInterval.

BoundaryRandomAccess4(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.boundary.BoundaryRandomAccess4

 

BoundaryRandomAccess8<T extends BooleanType<T>> - Class in net.imglib2.roi.boundary

A BoolType RandomAccess on a BooleanType source RandomAccessibleInterval.

BoundaryRandomAccess8(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.boundary.BoundaryRandomAccess8

 

BoundaryType - Enum in net.imglib2.roi

Defines the edge behavior of the Mask.

boundaryType() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask

 

boundaryType() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval

 

boundaryType() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask

 

boundaryType() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval

 

boundaryType() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask

 

boundaryType() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval

 

boundaryType() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask

 

boundaryType() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval

 

boundaryType() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask

 

boundaryType() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval

 

boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritableBox

 

boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritableEllipsoid

 

boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritablePolygon2D

 

boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritableSphere

 

boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritableSuperEllipsoid

 

boundaryType() - Method in interface net.imglib2.roi.geom.real.Line

 

boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritableBox

 

boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritableEllipsoid

 

boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritablePolygon2D

 

boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritableSphere

 

boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritableSuperEllipsoid

 

boundaryType() - Method in interface net.imglib2.roi.geom.real.PointMask

 

boundaryType() - Method in interface net.imglib2.roi.geom.real.Polyline

 

boundaryType() - Method in interface net.imglib2.roi.geom.real.RealPointCollection

 

boundaryType() - Method in class net.imglib2.roi.mask.integer.DefaultMask

 

boundaryType() - Method in class net.imglib2.roi.mask.integer.DefaultMaskInterval

 

boundaryType() - Method in class net.imglib2.roi.mask.real.DefaultRealMask

 

boundaryType() - Method in class net.imglib2.roi.mask.real.DefaultRealMaskRealInterval

 

boundaryType() - Method in interface net.imglib2.roi.MaskPredicate

Returns the boundary behavior of this Mask.

Bounded - Interface in net.imglib2.outofbounds

Interface implemented by entities (Samplers, Positionables, Localizables) that can tell whether they are currently located outside of the image boundaries.

BoundedSoftRefLoaderCache<K,V> - Class in net.imglib2.cache.ref

A cache that forwards to some other cache (usually WeakRefLoaderCache) and additionally keeps SoftReferences to the N most recently accessed values.

BoundedSoftRefLoaderCache(int, LoaderCache<K, V>) - Constructor for class net.imglib2.cache.ref.BoundedSoftRefLoaderCache

 

BoundedSoftRefLoaderCache(int) - Constructor for class net.imglib2.cache.ref.BoundedSoftRefLoaderCache

 

BoundingBox - Class in net.imglib2.labeling

Deprecated.

BoundingBox(int) - Constructor for class net.imglib2.labeling.BoundingBox

Deprecated.

 

BoundingBox - Class in net.imglib2.roi.labeling

A bounding box Interval around a region that is build by aggregating positions contained in the region.

BoundingBox(int) - Constructor for class net.imglib2.roi.labeling.BoundingBox

 

BoundingBox - Class in net.imglib2.transform.integer

TODO

BoundingBox(int) - Constructor for class net.imglib2.transform.integer.BoundingBox

 

BoundingBox(long[], long[]) - Constructor for class net.imglib2.transform.integer.BoundingBox

 

BoundingBox(Interval) - Constructor for class net.imglib2.transform.integer.BoundingBox

 

boundingBox - Variable in class net.imglib2.view.TransformBuilder

Interval transformed to the currently visited view.

BoundingBoxTransform - Interface in net.imglib2.transform.integer

Implemented by Transforms that can transform (easily) a BoundingBox in the source space to a bounding box in the target space.

Bounds<I extends RealInterval,B extends Bounds<I,B>> - Class in net.imglib2.roi

Operations on mask bounds.

Bounds(I) - Constructor for class net.imglib2.roi.Bounds

 

Bounds.AbstractAdaptingInterval - Class in net.imglib2.roi

Abstract base class which adapts to changes in source interval, leaving Interval.min(int) and Interval.max(int) methods to be implemented by derived classes.

Bounds.AbstractAdaptingRealInterval - Class in net.imglib2.roi

Abstract base class for bounds which adapt to changes in the source interval, leaving RealInterval.realMin(int) and RealInterval.realMax(int) methods to be implemented by derived classes.

Bounds.BinaryBoundsOperator - Interface in net.imglib2.roi

 

Bounds.IntBounds - Class in net.imglib2.roi

Implement Bounds for integer intervals.

Bounds.IntersectionInterval - Class in net.imglib2.roi

The intersection of two intervals.

Bounds.IntersectionRealInterval - Class in net.imglib2.roi

The intersection of two intervals.

Bounds.RealBounds - Class in net.imglib2.roi

Implement Bounds for real intervals.

Bounds.RealTransformRealInterval - Class in net.imglib2.roi

The Bounds for a transformed source.

Bounds.SmallestContainingInterval - Class in net.imglib2.roi

Represents the smallest Interval completely containing a specified RealInterval.

Bounds.UnaryBoundsOperator - Interface in net.imglib2.roi

 

Bounds.UnionInterval - Class in net.imglib2.roi

The union of two intervals.

Bounds.UnionRealInterval - Class in net.imglib2.roi

The union of two intervals.

Box - Interface in net.imglib2.roi.geom.real

A RealMaskRealInterval which defines an n-d box, cuboid, hyperrectangle, etc.

Branchpoints - Class in net.imglib2.algorithm.morphology.table2d

Removes all pixels except those that are the branchpoints of a skeleton.

Branchpoints() - Constructor for class net.imglib2.algorithm.morphology.table2d.Branchpoints

 

branchpoints(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Branchpoints

 

branchpoints(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Branchpoints

 

bresenham(List<? extends RealLocalizable>) - Static method in class net.imglib2.roi.geom.GeomMaths

 

BresenhamLine<T> - Class in net.imglib2.algorithm.region

n-Dimension Bresenham line (http://en.wikipedia.org/wiki/Bresenham%27s_line_algorithm") : an iterator that iterates all the pixels between two points.

BresenhamLine(RandomAccessible<T>) - Constructor for class net.imglib2.algorithm.region.BresenhamLine

 

BresenhamLine(RandomAccessible<T>, Localizable, Localizable) - Constructor for class net.imglib2.algorithm.region.BresenhamLine

 

BresenhamLine(RandomAccess<T>, Localizable, Localizable) - Constructor for class net.imglib2.algorithm.region.BresenhamLine

 

Bridge - Class in net.imglib2.algorithm.morphology.table2d

Sets a pixel to 1 if it has two non-zero neighbors that are on opposite sides of this pixel.

Bridge() - Constructor for class net.imglib2.algorithm.morphology.table2d.Bridge

 

bridge(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Bridge

 

bridge(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Bridge

 

BrightToDark() - Constructor for class net.imglib2.algorithm.componenttree.BuildComponentTree.BrightToDark

 

BSplineCoefficientsInterpolator<T extends RealType<T>> - Interface in net.imglib2.algorithm.bspline

Performs b-spline interpolation for order up to and including 5.

BSplineCoefficientsInterpolatorEven<T extends RealType<T>> - Class in net.imglib2.algorithm.bspline

Computes b-spline coefficients for splines of even order.

BSplineCoefficientsInterpolatorEven(int, RandomAccessible<T>, T) - Constructor for class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorEven

 

BSplineCoefficientsInterpolatorFactory<T extends RealType<T>,S extends RealType<S>> - Class in net.imglib2.algorithm.interpolation.randomaccess

 

BSplineCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean, ImgFactory<S>, OutOfBoundsFactory<? extends RealType<?>, ?>) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory

Creates a new BSplineCoefficientsInterpolatorFactory using the BSpline interpolation in a certain window

BSplineCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean, S) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory

 

BSplineCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory

 

BSplineCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory

 

BSplineCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory

 

BSplineCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory

 

BSplineCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int, boolean, S) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory

 

BSplineCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int, boolean) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory

 

BSplineCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory

 

BSplineCoefficientsInterpolatorFactory(RandomAccessibleInterval<S>, int, boolean, OutOfBoundsFactory<? extends RealType<?>, ?>) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory

 

BSplineCoefficientsInterpolatorFunction<T extends RealType<T>> - Class in net.imglib2.algorithm.bspline

Performs b-spline interpolation using pre-computed coefficients.

BSplineCoefficientsInterpolatorFunction(int, RandomAccess<Neighborhood<T>>, RealLocalizable, T) - Constructor for class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorFunction

 

BSplineCoefficientsInterpolatorFunction(int, RandomAccess<Neighborhood<T>>, RealLocalizable, T, boolean) - Constructor for class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorFunction

 

BSplineCoefficientsInterpolatorOdd<T extends RealType<T>> - Class in net.imglib2.algorithm.bspline

Computes b-spline coefficients for splines of odd order.

BSplineCoefficientsInterpolatorOdd(int, RandomAccessible<T>, T) - Constructor for class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorOdd

 

BSplineDecomposition<T extends RealType<T>,S extends RealType<S>> - Class in net.imglib2.algorithm.bspline

Compute Bspline coefficients from an image.

BSplineDecomposition(int, RandomAccessible<T>) - Constructor for class net.imglib2.algorithm.bspline.BSplineDecomposition

 

BSplineDecomposition(RandomAccessible<T>) - Constructor for class net.imglib2.algorithm.bspline.BSplineDecomposition

 

BSplineInterpolator<T extends RealType<T>> - Class in net.imglib2.algorithm.interpolation.randomaccess

Performs cubic b-spline interpolation by pre-computing coefficients on the fly.

BSplineInterpolator(BSplineInterpolator<T>) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator

 

BSplineInterpolator(RandomAccessible<T>, int, boolean) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator

 

BSplineInterpolator(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator

Build a default cubic-bspline interpolator.

BSplineInterpolatorFactory<T extends RealType<T>> - Class in net.imglib2.algorithm.interpolation.randomaccess

 

BSplineInterpolatorFactory(boolean, int) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolatorFactory

Creates a new BSplineInterpolatorFactory using the BSpline interpolation in a certain window

BSplineInterpolatorFactory(boolean) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolatorFactory

Creates a new BSplineInterpolatorFactory using the BSpline interpolation in a certain window

BSplineInterpolatorFactory(int) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolatorFactory

Creates a new BSplineInterpolatorFactory using the BSpline interpolation in a certain window

BSplineInterpolatorFactory() - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolatorFactory

Creates a new BSplineInterpolatorFactory with standard parameters (third-order, with clipping)

BsplineKernel0 - Class in net.imglib2.algorithm.bspline

A zeroth-order Bspline kernel Trivial, but included for completeness.

BsplineKernel0() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel0

 

BsplineKernel1 - Class in net.imglib2.algorithm.bspline

A first-order Bspline kernel Trivial, but included for completeness.

BsplineKernel1() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel1

 

BsplineKernel2 - Class in net.imglib2.algorithm.bspline

A second-order Bspline kernel

BsplineKernel2() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel2

 

BsplineKernel3 - Class in net.imglib2.algorithm.bspline

A third-order Bspline kernel

BsplineKernel3() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel3

 

BsplineKernel4 - Class in net.imglib2.algorithm.bspline

A fourth-order Bspline kernel

BsplineKernel4() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel4

 

BsplineKernel5 - Class in net.imglib2.algorithm.bspline

A fifth-order Bspline kernel

BsplineKernel5() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel5

 

BSplineLazyCoefficientsInterpolatorFactory<T extends RealType<T>,S extends RealType<S> & NativeType<S>> - Class in net.imglib2.algorithm.bspline

 

BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean, S, int[], OutOfBoundsFactory<? extends RealType<?>, ?>) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory

Creates a new BSplineLazyCoefficientsInterpolatorFactory.

BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean, S, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory

 

BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, int, boolean, S, int[], OutOfBoundsFactory<? extends RealType<?>, ?>) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory

 

BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, int, boolean, S, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory

 

BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory

 

BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory

 

BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory

 

BSplineLazyCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory

 

BSplineLazyCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int, boolean, S, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory

 

BSplineLazyCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int, boolean, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory

 

BSplineLazyCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory

 

BSplineLazyCoefficientsInterpolatorFactory.LazyCellImgFactory<T extends RealType<T>,S extends RealType<S> & NativeType<S>> - Class in net.imglib2.algorithm.bspline

Returns an image of coefficients that is lazily evaluated and cached.

bsplineOrder - Variable in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorEven

 

bsplineOrder - Variable in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorOdd

 

BufferedRectangularNeighborhood<T extends Type<T>> - Class in net.imglib2.algorithm.region.localneighborhood

 

BufferedRectangularNeighborhood(RandomAccessibleInterval<T>, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, long[]) - Constructor for class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhood

 

BufferedRectangularNeighborhood(int, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, long[]) - Constructor for class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhood

 

BufferedRectangularNeighborhoodCursor<T extends Type<T>> - Class in net.imglib2.algorithm.region.localneighborhood

 

BufferedRectangularNeighborhoodCursor(BufferedRectangularNeighborhood<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor

 

BufferedRectangularNeighborhoodCursor(BufferedRectangularNeighborhoodCursor<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor

 

build(int, RandomAccessible<S>, S) - Static method in interface net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolator

 

build(Function<S, T>, Function<T, S>) - Static method in interface net.imglib2.cache.util.KeyBimap

 

build() - Method in class net.imglib2.view.TransformBuilder

Create a sequence of wrapped RandomAccessibles from the TransformBuilder.transforms list.

BuildComponentTree<T extends Type<T>,C extends PartialComponent<T,C>> - Class in net.imglib2.algorithm.componenttree

Build the component tree of an image.

buildComponentTree(RandomAccessibleInterval<T>, PartialComponent.Generator<T, C>, PartialComponent.Handler<C>, Comparator<T>) - Static method in class net.imglib2.algorithm.componenttree.BuildComponentTree

Run the algorithm.

buildComponentTree(RandomAccessibleInterval<T>, PartialComponent.Generator<T, C>, PartialComponent.Handler<C>, boolean) - Static method in class net.imglib2.algorithm.componenttree.BuildComponentTree

Run the algorithm.

buildComponentTree(RandomAccessibleInterval<T>, T, boolean) - Static method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree

Build a component tree from an input image.

buildComponentTree(RandomAccessibleInterval<T>, T, ImgFactory<LongType>, boolean) - Static method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree

Build a component tree from an input image.

buildComponentTree(RandomAccessibleInterval<T>, T, Comparator<T>) - Static method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree

Build a component tree from an input image.

buildComponentTree(RandomAccessibleInterval<T>, T, Comparator<T>, ImgFactory<LongType>) - Static method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree

Build a component tree from an input image.

BuildComponentTree.BrightToDark<T extends Comparable<T>> - Class in net.imglib2.algorithm.componenttree

Default comparator for Comparable pixel values for bright-to-dark pass.

BuildComponentTree.DarkToBright<T extends Comparable<T>> - Class in net.imglib2.algorithm.componenttree

Default comparator for Comparable pixel values for dark-to-bright pass.

buildIterableInterval() - Method in class net.imglib2.view.iteration.IterableTransformBuilder

Create an IterableInterval on the Interval specified in the constructor of the RandomAccessible specified in the constructor.

buildMserTree(RandomAccessibleInterval<T>, double, long, long, double, double, boolean) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree

Build a MSER tree from an input image.

buildMserTree(RandomAccessibleInterval<T>, T, long, long, double, double, boolean) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree

Build a MSER tree from an input image.

buildMserTree(RandomAccessibleInterval<T>, T, long, long, double, double, ImgFactory<LongType>, boolean) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree

Build a MSER tree from an input image.

buildMserTree(RandomAccessibleInterval<T>, ComputeDelta<T>, long, long, double, double, T, Comparator<T>) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree

Build a MSER tree from an input image.

buildMserTree(RandomAccessibleInterval<T>, ComputeDelta<T>, long, long, double, double, ImgFactory<LongType>, T, Comparator<T>) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree

Build a MSER tree from an input image.

BYTE(Function<NativeLongAccessImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeLongAccessTypeFactory

 

BYTE(Function<NativeImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeTypeFactory

 

ByteAccess - Interface in net.imglib2.img.basictypeaccess

TODO

ByteAccessProxy<T extends GenericByteType<T>> - Class in net.imglib2.img.io.proxyaccess

Proxy access over any GenericByteType container.

ByteAccessProxy(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.img.io.proxyaccess.ByteAccessProxy

 

ByteArray - Class in net.imglib2.img.basictypeaccess.array

 

ByteArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.ByteArray

 

ByteArray(byte[]) - Constructor for class net.imglib2.img.basictypeaccess.array.ByteArray

 

byteArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo

 

ByteArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.ByteArrayType

 

ByteAWTScreenImage - Class in net.imglib2.display.screenimage.awt

A AWTScreenImage that is an ArrayImg<ByteType, ByteArray>.

ByteAWTScreenImage(ArrayImg<ByteType, ByteArray>) - Constructor for class net.imglib2.display.screenimage.awt.ByteAWTScreenImage

 

ByteAWTScreenImage(ByteType, ByteArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.ByteAWTScreenImage

 

ByteImagePlus<T extends NativeType<T>> - Class in net.imglib2.img.imageplus

ImagePlusImg for byte-stored data.

ByteImagePlus(long[], Fraction) - Constructor for class net.imglib2.img.imageplus.ByteImagePlus

 

ByteImagePlus(ImagePlus) - Constructor for class net.imglib2.img.imageplus.ByteImagePlus

 

ByteLongAccess - Interface in net.imglib2.img.basictypelongaccess

TODO

ByteLongAccessType - Class in net.imglib2.type.numeric.integer

 

ByteLongAccessType(NativeLongAccessImg<?, ? extends ByteLongAccess>) - Constructor for class net.imglib2.type.numeric.integer.ByteLongAccessType

 

ByteLongAccessType(byte) - Constructor for class net.imglib2.type.numeric.integer.ByteLongAccessType

 

ByteLongAccessType(ByteLongAccess) - Constructor for class net.imglib2.type.numeric.integer.ByteLongAccessType

 

ByteLongAccessType() - Constructor for class net.imglib2.type.numeric.integer.ByteLongAccessType

 

ByteLongAccessTypeByteTypeConverter - Class in net.imglib2.converter.readwrite.longaccess

 

ByteLongAccessTypeByteTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.ByteLongAccessTypeByteTypeConverter

 

ByteLongAccessTypeByteTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess

 

ByteNtree - Class in net.imglib2.img.sparse

ByteAccess based on a Ntree.

ByteNtree(long[], long[], byte) - Constructor for class net.imglib2.img.sparse.ByteNtree

 

bytes(long...) - Static method in class net.imglib2.img.array.ArrayImgs

Create an ArrayImg<ByteType, ByteArray>.

bytes(byte[], long...) - Static method in class net.imglib2.img.array.ArrayImgs

Creates an ArrayImg<ByteType, ByteArray> reusing a passed byte[] array.

bytes(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs

Creates an ArrayImg<ByteType, ByteAccess> using a ByteAccess passed as argument.

bytes(long...) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs

Create a ByteImagePlus<ByteType>.

bytes(long...) - Static method in class net.imglib2.img.planar.PlanarImgs

Create an PlanarImg<ByteType, ByteArray>.

bytes(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs

Create an UnsafeImg<ByteLongAccessType, ByteArray>.

bytes(ByteLongAccess, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs

Creates an UnsafeImg<ByteLongAccessType, ByteArray> reusing a passed byte[] array.

bytes - Variable in class net.imglib2.type.numeric.integer.Unsigned128BitType

 

ByteType - Class in net.imglib2.type.numeric.integer

TODO

ByteType(NativeImg<?, ? extends ByteAccess>) - Constructor for class net.imglib2.type.numeric.integer.ByteType

 

ByteType(byte) - Constructor for class net.imglib2.type.numeric.integer.ByteType

 

ByteType(ByteAccess) - Constructor for class net.imglib2.type.numeric.integer.ByteType

 

ByteType() - Constructor for class net.imglib2.type.numeric.integer.ByteType

 

ByteUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe

 

ByteUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe

 

ByteUnsafe(long, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe

 

ByteUnsafe(long, Object) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe

 

ByteUnsafe(long, Object, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe