ThinplateSplineTransform (ImgLib2 Javadocs 0-SNAPSHOT API)

java.lang.Object
- net.imglib2.realtransform.inverse.AbstractDifferentiableRealTransform
- - net.imglib2.realtransform.ThinplateSplineTransform

All Implemented Interfaces:

DifferentiableRealTransform, RealTransform
```
public class ThinplateSplineTransform
extends AbstractDifferentiableRealTransform
implements RealTransform
```
An n-dimensional thin plate spline transform backed by John Bogovic's jitk-tps library.

Author:

Stephan Saalfeld, John Bogovic

Constructor Summary

Constructors
Constructor and Description
`ThinplateSplineTransform(double[][] p, double[][] q)`
`ThinplateSplineTransform(ThinPlateR2LogRSplineKernelTransform tps)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`apply(double[] source, double[] target)` Apply the `RealTransform` to a source vector to obtain a target vector.
`void`	`apply(RealLocalizable source, RealPositionable target)` Apply the `RealTransform` to a source `RealLocalizable` to obtain a target `RealPositionable`.
`ThinplateSplineTransform`	`copy()` Create a deep copy of this `RealTransform`.
`AffineTransform`	`jacobian(double[] x)` Returns the jacobian matrix of this transform at the point x.
`int`	`numSourceDimensions()` Returns n, the minimal number of dimension of the source vector.
`int`	`numTargetDimensions()` Returns m, the minimal dimension of the target vector.

Methods inherited from class net.imglib2.realtransform.inverse.AbstractDifferentiableRealTransform
directionToward, directionToward, matrixTranspose

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imglib2.realtransform.RealTransform
apply, isIdentity

- Constructor Detail
  - ThinplateSplineTransform
```
public ThinplateSplineTransform(ThinPlateR2LogRSplineKernelTransform tps)
```
  - ThinplateSplineTransform
```
public ThinplateSplineTransform(double[][] p,
                                double[][] q)
```
- Method Detail
  - apply
```
public void apply(double[] source,
                  double[] target)
```
    Description copied from interface: RealTransform
    
    Apply the RealTransform to a source vector to obtain a target vector.
    
    Specified by:
    
    apply in interface RealTransform
    
    Parameters:
    
    source - source coordinates, length must be >= RealTransform.numSourceDimensions()
    
    target - set this to the target coordinates, length must be >= RealTransform.numTargetDimensions()
  - apply
```
public void apply(RealLocalizable source,
                  RealPositionable target)
```
    Description copied from interface: RealTransform
    
    Apply the RealTransform to a source RealLocalizable to obtain a target RealPositionable.
    
    Specified by:
    
    apply in interface RealTransform
    
    Parameters:
    
    source - source coordinates, numDimensions() must be >= RealTransform.numSourceDimensions()
    
    target - set this to the target coordinates, numDimensions() must be >= RealTransform.numTargetDimensions()
  - copy
```
public ThinplateSplineTransform copy()
```
    Description copied from interface: RealTransform
    
    Create a deep copy of this RealTransform.
    Deep copying is required to make sure that stateful RealTransforms can be duplicated for concurrent code.
    
    Specified by:
    
    copy in interface DifferentiableRealTransform
    
    Specified by:
    
    copy in interface RealTransform
    
    Returns:
    
    deep copy
  - numSourceDimensions
```
public int numSourceDimensions()
```
    Description copied from interface: RealTransform
    
    Returns n, the minimal number of dimension of the source vector.
    
    Specified by:
    
    numSourceDimensions in interface RealTransform
    
    Returns:
    
    the dimension of the source vector.
  - numTargetDimensions
```
public int numTargetDimensions()
```
    Description copied from interface: RealTransform
    
    Returns m, the minimal dimension of the target vector.
    
    Specified by:
    
    numTargetDimensions in interface RealTransform
    
    Returns:
    
    the dimension of the target vector.
  - jacobian
```
public AffineTransform jacobian(double[] x)
```
    Description copied from class: AbstractDifferentiableRealTransform
    
    Returns the jacobian matrix of this transform at the point x.
    
    Specified by:
    
    jacobian in interface DifferentiableRealTransform
    
    Specified by:
    
    jacobian in class AbstractDifferentiableRealTransform
    
    Parameters:
    
    x - the point
    
    Returns:
    
    the jacobian

Class ThinplateSplineTransform

Constructor Summary

Method Summary

Methods inherited from class net.imglib2.realtransform.inverse.AbstractDifferentiableRealTransform

Methods inherited from class java.lang.Object

Methods inherited from interface net.imglib2.realtransform.RealTransform

Constructor Detail

ThinplateSplineTransform

ThinplateSplineTransform

Method Detail

apply

apply

copy

numSourceDimensions

numTargetDimensions

jacobian