| Modifier and Type | Field and Description |
|---|---|
protected MovingLeastSquaresMesh<? extends AbstractModel<?>> |
Transform_MovingLeastSquaresMesh.mesh |
| Modifier and Type | Field and Description |
|---|---|
protected AbstractModel<?>[] |
BigWarp.baseXfmList |
| Modifier and Type | Class and Description |
|---|---|
class |
CubicBSplineTransform
Class to implement elastic transforms based on cubic B-splines.
|
| Modifier and Type | Class and Description |
|---|---|
class |
PolynomialModel2D
A wrpper for
NonLinearTransform and the AbstractAffineModel2D
to which it is regularized. |
| Modifier and Type | Method and Description |
|---|---|
static <M extends AbstractModel<M> & InverseCoordinateTransform> |
AlignStacksWithLandmarks.createAlignedStack(ij.ImagePlus source,
ij.ImagePlus target,
Collection<PointMatch> pointMatches,
M model) |
| Modifier and Type | Method and Description |
|---|---|
static AbstractModel<?> |
ElasticAlign.createModel(int modelIndex) |
| Modifier and Type | Method and Description |
|---|---|
static Vector<PointMatch> |
FloatArray2DSIFT.createMatches(List<Feature> fs1,
List<Feature> fs2,
double max_sd,
AbstractModel<?> model,
double max_id,
double rod)
identify corresponding features using spatial constraints
|
static List<PointMatch> |
FloatArray2DMOPS.createMatches(List<Feature> fs1,
List<Feature> fs2,
double max_sd,
AbstractModel<?> model,
double max_id,
double rod)
identify corresponding features using spatial constraints
|
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractModel<M extends AbstractModel<M>>
Abstract class for arbitrary transformation models to be applied
to
Points in n-dimensional space. |
class |
ElasticMovingLeastSquaresMesh<M extends AbstractModel<M>> |
class |
MovingLeastSquaresMesh<M extends AbstractModel<M>>
A transformation mesh that implements a landmark based deformation by means
of Moving Least Squares as described by \citet{SchaeferAl06} inspired by the
implementation of Johannes Schindelin.
|
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractAffineModel1D<M extends AbstractAffineModel1D<M>> |
class |
AbstractAffineModel2D<M extends AbstractAffineModel2D<M>> |
class |
AbstractAffineModel3D<M extends AbstractAffineModel3D<M>> |
class |
AffineModel1D |
class |
AffineModel2D
2d-affine transformation models to be applied to points in 2d-space.
|
class |
AffineModel3D
3d-affine transformation models to be applied to points in 3d-space.
|
class |
ConstantAffineModel1D<A extends Model<A> & Affine1D<A> & InvertibleBoundable>
1D affine specialization of
ConstantModel. |
class |
ConstantModel<A extends Model<A>,M extends ConstantModel<A,M>>
Wraps another models but does not pass through calls to
Model.fit(float[][], float[][], float[]). |
class |
HomographyModel2D
2d-homography
AbstractModel to be applied to points in 2d-space. |
class |
IdentityModel
nd-identity
AbstractModel. |
class |
InterpolatedAffineModel1D<A extends Model<A> & Affine1D<A>,B extends Model<B> & Affine1D<B>>
1D affine specialization of
InterpolatedModel. |
class |
InterpolatedAffineModel2D<A extends Model<A> & Affine2D<A>,B extends Model<B> & Affine2D<B>>
2D affine specialization of
InterpolatedModel. |
class |
InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model<B> & Affine3D<B>>
3D affine specialization of
InterpolatedModel. |
class |
InterpolatedModel<A extends Model<A>,B extends Model<B>,M extends InterpolatedModel<A,B,M>>
Linearly interpolates between two independent models.
|
class |
InvertibleConstantModel<A extends Model<A> & InvertibleCoordinateTransform,M extends InvertibleConstantModel<A,M>>
Invertible specialization of
ConstantModel. |
class |
InvertibleInterpolatedModel<A extends Model<A> & InvertibleCoordinateTransform,B extends Model<B> & InvertibleCoordinateTransform,M extends InvertibleInterpolatedModel<A,B,M>>
Invertible specialization of
InterpolatedModel. |
class |
RigidModel2D
2d-rigid transformation models to be applied to points in 2d-space.
|
class |
RigidModel3D |
class |
SimilarityModel2D
2d-similarity transformation models to be applied to points in 2d-space.
|
class |
SimilarityModel3D
3d-rigid transformation models to be applied to points in 3d-space.
|
class |
TranslationModel1D
1d-translation
AbstractModel to be applied to points in 1d-space. |
class |
TranslationModel2D
2d-translation
AbstractModel to be applied to points in 2d-space. |
class |
TranslationModel3D |
| Modifier and Type | Class and Description |
|---|---|
class |
FixedModel
This model just applies some other
TranslationInvariantModel without computing anything. |
class |
TranslationInvariantAffineModel3D
3d-affine transformation models to be applied to points in 3d-space.
|
class |
TranslationInvariantFixedModel
This model just applies some other
TranslationInvariantModel without computing anything. |
class |
TranslationInvariantModel<M extends TranslationInvariantModel<M>>
This class is a subtle hint that
Models which are used to fit AbstractPointDescriptors should be translation invariant. |
class |
TranslationInvariantRigidModel2D
2d-rigid transformation models to be applied to points in 2d-space.
|
class |
TranslationInvariantRigidModel3D
3d-rigid transformation models to be applied to points in 3d-space.
|
class |
TranslationInvariantSimilarityModel3D
3d-rigid transformation models to be applied to points in 3d-space.
|
| Modifier and Type | Method and Description |
|---|---|
static AbstractModel<?> |
Util.createModel(int modelIndex) |
| Modifier and Type | Field and Description |
|---|---|
Triple<Integer,Integer,AbstractModel<?>> |
BlockMatchPairCallable.BlockMatchResults.pair |
| Constructor and Description |
|---|
BlockMatchPairCallable(Triple<Integer,Integer,AbstractModel<?>> pair,
List<Layer> layerRange,
boolean layer1Fixed,
boolean layer2Fixed,
Filter<Patch> filter,
ElasticLayerAlignment.Param param,
Collection<? extends Point> sourcePoints1,
Collection<? extends Point> sourcePoints2,
Rectangle box) |
BlockMatchResults(Collection<? extends Point> v1,
Collection<? extends Point> v2,
Collection<PointMatch> pm12,
Collection<PointMatch> pm21,
boolean layer1Fixed,
boolean layer2Fixed,
Triple<Integer,Integer,AbstractModel<?>> pair) |
| Modifier and Type | Field and Description |
|---|---|
protected AbstractModel<?> |
DescriptorParameters.initialModel |
AbstractModel<?> |
DescriptorParameters.model |
| Modifier and Type | Method and Description |
|---|---|
AbstractModel<?> |
DescriptorParameters.getInitialModel() |
| Modifier and Type | Method and Description |
|---|---|
AbstractModel |
TransformationModel.getModel() |
| Modifier and Type | Method and Description |
|---|---|
AbstractModel<?> |
GlobalOptimizationType.getMapBackModel()
The transformation model used to map back to the reference frame (can be null)
|
| Modifier and Type | Method and Description |
|---|---|
void |
GlobalOptimizationType.setMapBackModel(AbstractModel<?> model) |
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