| Interface | Description |
|---|---|
| CPU_Meter.CLibrary | |
| DisplayChangeListener |
The Listener interface for receiving DisplayChange events.
|
| Class | Description |
|---|---|
| _3D_objects_counter | |
| _3D_OC_Options | |
| About_RATS | |
| Align_Image |
Select two images with a Line ROI in each, and rotate/translate/scale one to
the other.
|
| Align_Image.BilinearInterpolator | |
| Align_Image.Interpolator | |
| AmiraMeshReader_ | |
| AmiraMeshWriter_ | |
| AmiraTableWriter_ | |
| Average_Color | |
| Bilateral_Filter | |
| Biorad_Reader |
Imports a Z series(image stack) from a Biorad MRC 600
confocal microscope.
|
| Biorad_Writer | |
| BorderPanel |
A panel with a border and an optional title.
|
| Calculator_Plus |
This plugin does various calculations on two images or stacks.
|
| CollectGarbage_ | |
| Color_Inspector_3D | |
| ColorHistogram_ |
This plugin is based on the Histogram plugin,
the HistogramWindow class and the LookUpTable class.
|
| ColorKLT | |
| Compute_Curvatures | |
| Compute_Topography |
Created by IntelliJ IDEA.
|
| CPU_Meter | |
| CropEditor_ | |
| Daltonize_ |
This plugin can simulate color blindness.
|
| DateUtils | |
| DeInterleave_ | |
| Delaunay_Voronoi |
Draw Delaunay triangulation or Voronoi Diagram as an overlay.
|
| DeltaVision_Converter | |
| Despeckle_ | |
| Dichromacy_ | |
| DisplayChangeEvent |
To be raised when a property of the image display has been changed
|
| Fill_holes | |
| Find_PointRoi | |
| FindIt_ | |
| FlowJ_ | |
| GrayMorphology_ | |
| HandleExtraFileTypes |
Plugin to handle file types which are not implemented directly in ImageJ
through io.Opener.
|
| Helmholtz_Analysis |
This plugin uses the Helmholtz equation to estimage the wavelength of a harmonic image.
|
| HybridDateFormat |
SimpleDateFormat provides convenient methods for parsing and formatting dates
using Gregorian calendars (see java.util.GregorianCalendar).
|
| IJ_Robot | |
| IJEventMulticaster |
Multicaster for events special to ImageJ
|
| Implicit_Interpolate_Binary | |
| Implicit_Interpolate_Binary.ImplicitSamples | |
| Interactive_3D_Surface_Plot | |
| IntField |
TextField that takes only integers, and sends an ActionEvent
when the integer Value has changed either by hitting return or by
loss of Mouse Focus.
|
| IntSlider | |
| IsoData_Classifier | |
| Kalman_Filter | |
| KD_Cartoon | |
| KLT |
Karhunen-Loeve-Tranformation
|
| Kuwahara_Filter | |
| Kuwahara_LinearStructure_Filter_v3 |
A version of the Kuwahara filter that uses linear kernels rather than square ones.
|
| LSM_Reader | |
| LSM_Toolbox | |
| Manual_Tracking | |
| MC_Test | |
| Menu_Font | |
| MOPS_ExtractPointRoi |
Extract landmark correspondences in two images as PointRoi.
|
| Moving_Least_Squares |
This plugin implements the algorithms from the paper
Image Deformation Using Moving Least Squares, Schaefer S.
|
| MTrack2_ |
Uses ImageJ's particle analyzer to track the movement of
multiple objects through a stack.
|
| MultipleImageProcessor | |
| OpenImage5DAdapter |
This class contains static methods, which handle the "open"-specific features of
OpenImage5DWindow and OpenStackWindow:
- converting a StackWindow to the appropriate class
- adding and removing displayChangeListener
OpenImage5DAdapter is the implementation for the case that the Image5D plugins
are installed along with SyncWindows.
|
| OpenImage5DWindow |
Image5DWindow, which issues DispChanged Events
to registered Listeners, when the displayed slice has been changed.
|
| OpenStackAdapter |
This class contains static methods, which handle the "open"-specific features of
OpenStackWindow:
- converting a StackWindow to the appropriate class
- adding and removing displayChangeListener
OpenStackAdapter is the implementation for the case that the Image5D plugins
are not installed along with SyncWindows.
|
| OpenStackWindow |
StackWindow, which issues DispChanged Events
to registered Listeners, when the displayed slice has been changed.
|
| parObject | |
| PIV_analyser |
PIV analysis
|
| PIVAnalyserTestDrive | |
| Psychomorph_TEM_Reader | |
| RATS_ |
RATS_ (Robust Automatic Threshold Selection) ImageJ plugin.
|
| RATSQuadtree | |
| Remove_Slope |
Created by IntelliJ IDEA.
|
| Replace_Value | |
| Reslice_Z | |
| Retinex_ | |
| RGB_to_CIELAB | |
| Rohlfing_SBA | |
| ROI_3D | |
| ROIBrush_ |
User: Tom Larkworthy
Date: 08-Jun-2006
Time: 17:32:42
|
| Scrollable_StackWindow | |
| Seam_Remover | |
| Segmentation_Editor | |
| Series_Labeler |
This plugin is inspired by the Time_Stamper plugins from ImageJ
and from Tony Collins' plugin collection at macbiophotonics.
|
| Show_Label_Centers | |
| ShowAmiraSurface_ | |
| SIFT_Align |
Align a stack consecutively using automatically extracted robust landmark
correspondences.
|
| SIFT_ExtractPointRoi |
Extract landmark correspondences in two images as PointRoi.
|
| SIFT_Test |
Extract and display Scale Invariant Features after the method of David Lowe
\cite{Lowe04} in an image.
|
| Slice_Keeper |
This plugin keeps slices from a stack.
|
| Slice_Remover |
This plugin removes slices from a stack.
|
| SRM_ | |
| Stack_Interleaver |
Interleaves two stacks to create a new stack
This plugin is modified from Stack_Combiner (see Wayne Rasband)
|
| Stack_Rotate | |
| Stack_Sorter |
Bob Dougherty.
|
| Stack_Splitter |
Splits a stack into multiple substacks.
|
| Stitch_Image_Collection | |
| Stitch_Image_Directory | |
| Stitch_Image_Grid | |
| Stitch_Image_Grid_Sequence |
Plugin class to stitch a sequence of grid of images (fixed X/Y configuration)
|
| Stitch_Many_Images | |
| Stitch_Multiple_Series_File | |
| Stitching_2D | |
| Stitching_3D | |
| Stopwatch |
Time the execution of any block of code.
|
| SurfaceJ_ |
This class interfaces the VolumeJ package to a ImageJ plugin.
|
| SymMat | |
| Sync_Measure_3D |
This PlugIn synchronizes the cursor and z-slice in all selected windows, and performs measurements on 3D ROIs in all selected windows.
|
| Sync_Windows |
This class "synchronizes" mouse input in multiple windows.
|
| Test_Java3D | |
| TextFieldFocus |
TextField that sends an ActionEvent when the integer Value has changed
either by hitting return (as the normal AWT TextField) or by
loss of Mouse Focus (new).
|
| Thread_Killer | |
| Time_Stamper | |
| ToAST25_ | |
| Transform_Affine | |
| Transform_MovingLeastSquaresMesh |
Smooth image deformation using landmark based deformation by means
of Moving Least Squares as described by \citet{SchaeferAl06} inspired by the
implementation of Johannes Schindelin.
|
| Transform_Perspective | |
| Transform_RegularizedAffine | |
| Transform_Rigid | |
| Transform_Roi |
Use two sets of
landmarks selected in two images to map
one image to the other. |
| Transform_Similarity | |
| Transform_SpringMesh | |
| Transform_ThinPlateSpline |
Smooth image deformation using landmark based deformation by means
of Thin Plate Spline inspired by the implementation of Kitware (ITK).
|
| Triangle_Algorithm | |
| Two_Point_Correlation | |
| Vaa3d_Writer | |
| VIB_Protocol | |
| Visual_Grep | |
| Volume_Reconstructor_ |
Volume Reconstructor is a plugin for ImageJ that reconstructs volumes.
|
| VolumeJ_ |
This class interfaces the VolumeJ package to a ImageJ plugin.
|
| Enum | Description |
|---|---|
| PIV_analyser.WINDOW_SIZE |
Enumeration constant that stores all possible window size for this plugin.
|
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