mpicbg.models (Fiji Javadocs 0-SNAPSHOT API)

Interface Summary
Interface	Description
Affine1D<T extends Affine1D<T>>
Affine2D<T extends Affine2D<T>>
Affine3D<T extends Affine3D<T>>
Boundable	A `CoordinateTransform` that, for a given source interval in n-space, can estimate the target interval in n-space.
CoordinateTransform
InverseBoundable	An `InverseCoordinateTransform` that, for a given source interval in n-space, can estimate the target interval in n-space.
InverseCoordinateTransform
InvertibleBoundable
InvertibleCoordinateTransform
Model<M extends Model<M>>	`CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
PointFactory<P extends Point>
PointMatchFactory<M extends PointMatch>
TransformList<E>	A generic list of transforms

Class Summary
Class	Description
AbstractAffineModel1D<M extends AbstractAffineModel1D<M>>
AbstractAffineModel2D<M extends AbstractAffineModel2D<M>>
AbstractAffineModel3D<M extends AbstractAffineModel3D<M>>
AbstractModel<M extends AbstractModel<M>>	Abstract class for arbitrary transformation models to be applied to `Points` in n-dimensional space.
AbstractMovingLeastSquaresTransform	Smooth coordinate transformation interpolating between a set of control points that are maped exactly on top of each other using landmark based deformation by means of Moving Least Squares as described by \citet{SchaeferAl06}.
AffineModel1D
AffineModel2D	2d-affine transformation models to be applied to points in 2d-space.
AffineModel3D	3d-affine transformation models to be applied to points in 3d-space.
ConstantAffineModel1D<A extends Model<A> & Affine1D<A> & InvertibleBoundable>	1D affine specialization of `ConstantModel`.
ConstantModel<A extends Model<A>,M extends ConstantModel<A,M>>	Wraps another models but does not pass through calls to `Model.fit(float[][], float[][], float[])`.
CoordinateTransformList<E extends CoordinateTransform>	TODO Think about if it should really implement Boundable.
CoordinateTransformMap2D	A `CoordinateTransform` that is saved as a LUT on integer coordinates.
CoordinateTransformMesh
ElasticMovingLeastSquaresMesh<M extends AbstractModel<M>>
ErrorStatistic
HomographyModel2D	2d-homography `AbstractModel` to be applied to points in 2d-space.
IdentityModel	nd-identity `AbstractModel`.
InterpolatedAffineModel1D<A extends Model<A> & Affine1D<A>,B extends Model<B> & Affine1D<B>>	1D affine specialization of `InterpolatedModel`.
InterpolatedAffineModel2D<A extends Model<A> & Affine2D<A>,B extends Model<B> & Affine2D<B>>	2D affine specialization of `InterpolatedModel`.
InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model<B> & Affine3D<B>>	3D affine specialization of `InterpolatedModel`.
InterpolatedCoordinateTransform<A extends CoordinateTransform,B extends CoordinateTransform>	Linearly interpolates between two independent `CoordinateTransforms`.
InterpolatedModel<A extends Model<A>,B extends Model<B>,M extends InterpolatedModel<A,B,M>>	Linearly interpolates between two independent models.
InverseCoordinateTransformList<E extends InverseCoordinateTransform>	TODO Think about if it should really implement InverseBoundable.
InverseCoordinateTransformMap2D	An `InverseCoordinateTransform` that is saved as a LUT on integer coordinates.
InvertibleConstantModel<A extends Model<A> & InvertibleCoordinateTransform,M extends InvertibleConstantModel<A,M>>	Invertible specialization of `ConstantModel`.
InvertibleCoordinateTransformList<E extends InvertibleCoordinateTransform>
InvertibleInterpolatedModel<A extends Model<A> & InvertibleCoordinateTransform,B extends Model<B> & InvertibleCoordinateTransform,M extends InvertibleInterpolatedModel<A,B,M>>	Invertible specialization of `InterpolatedModel`.
MovingLeastSquaresMesh<M extends AbstractModel<M>>	A transformation mesh that implements a landmark based deformation by means of Moving Least Squares as described by \citet{SchaeferAl06} inspired by the implementation of Johannes Schindelin.
MovingLeastSquaresTransform	Smooth coordinate transformation interpolating between a set of control points that are maped exactly on top of each other using landmark based deformation by means of Moving Least Squares as described by \citet{SchaeferAl06}.
MovingLeastSquaresTransform2	Alternative implementation of the smooth coordinate transformation interpolating between a set of control points that are maped exactly on top of each other using landmark based deformation by means of Moving Least Squares as described by \citet{SchaeferAl06}.
Point	An n-dimensional point.
PointMatch	A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.
PolynomialTransform2D
RigidModel2D	2d-rigid transformation models to be applied to points in 2d-space.
RigidModel3D
SimilarityModel2D	2d-similarity transformation models to be applied to points in 2d-space.
SimilarityModel3D	3d-rigid transformation models to be applied to points in 3d-space.
Spring	A simple spring model.
SpringMesh	A `TransformMesh` with all Vertices being interconnected by springs.
Tile<M extends Model<M>>
TileConfiguration	A configuration of tiles.
TileUtil
TransformMesh	Triangular transformation mesh.
TransformMeshMap2D
Transforms	Exclusively static methods that would ideally be implemented in `CoordinateTransform` and related interfaces, but well---this is Java where multiple inheritance is considered evil...
TranslationModel1D	1d-translation `AbstractModel` to be applied to points in 1d-space.
TranslationModel2D	2d-translation `AbstractModel` to be applied to points in 2d-space.
TranslationModel3D
Vertex	An n-dimensional `Vertex` being connected to other `Vertices` by `Springs`

Exception Summary
Exception	Description
IllDefinedDataPointsException	Signalizes that there were not enough data points available to estimate the `AbstractModel`.
NoninvertibleModelException	Signalizes that a `AbstractModel` is not invertible.
NotEnoughDataPointsException	Signalizes that there were not enough data points available to estimate the `AbstractModel`.

Package mpicbg.models