| Modifier and Type | Method and Description |
|---|---|
Channel |
ViewSetup.getChannel()
Get the
Channel. |
| Modifier and Type | Method and Description |
|---|---|
Map<Integer,Channel> |
SequenceDescription.getAllChannels()
|
static HashMap<Integer,Channel> |
ViewSetups.getAllChannels(Collection<? extends ViewSetup> setups) |
List<Channel> |
SequenceDescription.getAllChannelsOrdered()
|
| Modifier and Type | Method and Description |
|---|---|
int |
Channel.compareTo(Channel o)
Compares the
ids. |
protected void |
ViewSetup.setChannel(Channel channel)
Set the
Channel. |
| Constructor and Description |
|---|
ViewSetup(int id,
String name,
Dimensions size,
VoxelDimensions voxelSize,
Channel channel,
Angle angle,
Illumination illumination)
TODO
|
ViewSetup(int id,
String name,
Dimensions size,
VoxelDimensions voxelSize,
Tile tile,
Channel channel,
Angle angle,
Illumination illumination)
TODO
|
| Modifier and Type | Method and Description |
|---|---|
static String[] |
Interest_Point_Registration.getAllInterestPointLabelsForChannel(SpimData2 spimData,
List<ViewId> viewIdsToProcess,
Channel channel)
Goes through all ViewDescriptions and checks all available labels for interest point detection
|
static String[] |
Interest_Point_Registration.getAllInterestPointLabelsForChannel(SpimData2 spimData,
List<ViewId> viewIdsToProcess,
Channel channel,
String doWhat)
Goes through all ViewDescriptions and checks all available labels for interest point detection
|
| Modifier and Type | Method and Description |
|---|---|
protected String[] |
Duplicate_Transformation.assembleChannels(List<Channel> channels) |
| Modifier and Type | Field and Description |
|---|---|
protected List<Channel> |
Fusion.channelsToProcess |
| Modifier and Type | Method and Description |
|---|---|
protected ViewId |
DifferenceOf.getViewSelection(String dialogHeader,
String text,
Channel channel)
Figure out which view to use for the interactive preview
|
protected boolean |
DifferenceOfMean.setAdvancedValues(Channel channel) |
protected boolean |
DifferenceOfGaussian.setAdvancedValues(Channel channel) |
protected abstract boolean |
DifferenceOf.setAdvancedValues(Channel channel) |
protected boolean |
DifferenceOfMean.setDefaultValues(Channel channel,
int brightness) |
protected boolean |
DifferenceOfGaussian.setDefaultValues(Channel channel,
int brightness) |
protected abstract boolean |
DifferenceOf.setDefaultValues(Channel channel,
int brightness) |
protected boolean |
DifferenceOfMean.setInteractiveValues(Channel channel) |
protected boolean |
DifferenceOfGaussian.setInteractiveValues(Channel channel) |
protected abstract boolean |
DifferenceOf.setInteractiveValues(Channel channel) |
| Modifier and Type | Method and Description |
|---|---|
List<Channel> |
LoadParseQueryXML.getChannelsToProcess() |
| Constructor and Description |
|---|
ChannelProcessThinOut(Channel channel,
String label,
String newLabel,
boolean showHistogram,
int subsampling) |
| Modifier and Type | Method and Description |
|---|---|
static ArrayList<Channel> |
SpimData2.getAllChannelsSorted(SpimData data,
Collection<? extends ViewId> viewIds) |
| Modifier and Type | Method and Description |
|---|---|
static ArrayList<Angle> |
SpimData2.getAllAnglesForChannelTimepointSorted(SpimData data,
Collection<? extends ViewId> viewIds,
Channel c,
TimePoint t) |
static ArrayList<Illumination> |
SpimData2.getAllIlluminationsForChannelTimepointSorted(SpimData data,
Collection<? extends ViewId> viewIds,
Channel c,
TimePoint t) |
static ArrayList<ViewDescription> |
SpimData2.getAllViewIdsForChannelSorted(SpimData data,
Collection<? extends ViewId> viewIds,
Channel channel) |
static ArrayList<ViewDescription> |
SpimData2.getAllViewIdsForChannelTimePointSorted(SpimData data,
Collection<? extends ViewId> viewIds,
Channel channel,
TimePoint timePoint) |
static ViewId |
SpimData2.getViewId(SequenceDescription seqDesc,
TimePoint t,
Channel c,
Angle a,
Illumination i) |
static ViewSetup |
SpimData2.getViewSetup(List<? extends ViewSetup> list,
Channel c,
Angle a,
Illumination i) |
| Modifier and Type | Method and Description |
|---|---|
protected static Channel |
LegacySlideBook6ImgLoader.getChannel(BasicViewDescription<?> vd) |
protected static Channel |
LegacyLightSheetZ1ImgLoader.getChannel(BasicViewDescription<?> vd) |
| Modifier and Type | Method and Description |
|---|---|
static ArrayList<ViewDescription> |
FusionHelper.assembleInputData(SpimData2 spimData,
TimePoint timepoint,
Channel channel,
List<ViewId> viewIdsToProcess) |
| Modifier and Type | Method and Description |
|---|---|
protected String[] |
AutomaticBoundingBox.assembleChannels(List<Channel> channels) |
| Constructor and Description |
|---|
MinFilterThreshold(SpimData2 spimData,
List<ViewId> viewIdsToProcess,
Channel channel,
TimePoint timepoint,
BoundingBoxGUI bb,
double background,
int discardedObjectSize,
boolean loadSequentially,
boolean displaySegmentationImage) |
| Modifier and Type | Method and Description |
|---|---|
Channel |
ChannelPSF.getChannel() |
Channel |
ChannelPSF.getOtherChannel() |
| Modifier and Type | Method and Description |
|---|---|
protected ExtractPSF<FloatType> |
ProcessForDeconvolution.assignOtherChannel(Channel channel,
HashMap<Channel,ChannelPSF> extractPSFLabels) |
protected void |
EfficientBayesianBased.displayParametersAndPSFs(BoundingBoxGUI bb,
Channel channel,
HashMap<Channel,ChannelPSF> extractPSFLabels) |
boolean |
ProcessForDeconvolution.fuseStacksAndGetPSFs(TimePoint timepoint,
Channel channel,
ImgFactory<FloatType> imgFactory,
int osemIndex,
double osemspeedup,
ProcessForDeconvolution.WeightType weightType,
HashMap<Channel,ChannelPSF> extractPSFLabels,
long[] psfSize,
HashMap<Channel,ArrayList<Pair<Pair<Angle,Illumination>,String>>> psfFiles,
boolean transformLoadedPSFs)
Fuses one stack, i.e.
|
| Modifier and Type | Method and Description |
|---|---|
protected void |
EfficientBayesianBased.assembleAvailableCorrespondences(HashMap<Channel,ArrayList<EfficientBayesianBased.Correspondence>> correspondences,
HashMap<Channel,Integer> viewsPresent,
boolean onlyValid) |
protected void |
EfficientBayesianBased.assembleAvailableCorrespondences(HashMap<Channel,ArrayList<EfficientBayesianBased.Correspondence>> correspondences,
HashMap<Channel,Integer> viewsPresent,
boolean onlyValid) |
protected ExtractPSF<FloatType> |
ProcessForDeconvolution.assignOtherChannel(Channel channel,
HashMap<Channel,ChannelPSF> extractPSFLabels) |
protected void |
EfficientBayesianBased.displayParametersAndPSFs(BoundingBoxGUI bb,
Channel channel,
HashMap<Channel,ChannelPSF> extractPSFLabels) |
boolean |
ProcessForDeconvolution.fuseStacksAndGetPSFs(TimePoint timepoint,
Channel channel,
ImgFactory<FloatType> imgFactory,
int osemIndex,
double osemspeedup,
ProcessForDeconvolution.WeightType weightType,
HashMap<Channel,ChannelPSF> extractPSFLabels,
long[] psfSize,
HashMap<Channel,ArrayList<Pair<Pair<Angle,Illumination>,String>>> psfFiles,
boolean transformLoadedPSFs)
Fuses one stack, i.e.
|
boolean |
ProcessForDeconvolution.fuseStacksAndGetPSFs(TimePoint timepoint,
Channel channel,
ImgFactory<FloatType> imgFactory,
int osemIndex,
double osemspeedup,
ProcessForDeconvolution.WeightType weightType,
HashMap<Channel,ChannelPSF> extractPSFLabels,
long[] psfSize,
HashMap<Channel,ArrayList<Pair<Pair<Angle,Illumination>,String>>> psfFiles,
boolean transformLoadedPSFs)
Fuses one stack, i.e.
|
| Constructor and Description |
|---|
ChannelPSF(Channel channel) |
ChannelPSF(Channel channel,
Channel otherPSF) |
ChannelPSF(Channel channel,
String label) |
| Modifier and Type | Method and Description |
|---|---|
static Set<Channel> |
XMLTIFFImgTitler.getAllChannels(List<ViewSetup> viewSetups) |
| Modifier and Type | Method and Description |
|---|---|
<T extends RealType<T> & NativeType<T>> |
ProcessSequential.fuseStack(T type,
InterpolatorFactory<T,RandomAccessible<T>> interpolatorFactory,
TimePoint timepoint,
Channel channel)
Fuses one stack, i.e.
|
<T extends RealType<T> & NativeType<T>> |
ProcessParalell.fuseStack(T type,
InterpolatorFactory<T,RandomAccessible<T>> interpolatorFactory,
TimePoint timepoint,
Channel channel)
Fuses one stack, i.e.
|
<T extends RealType<T> & NativeType<T>> |
ProcessIndependent.fuseStack(T type,
InterpolatorFactory<T,RandomAccessible<T>> interpolatorFactory,
TimePoint timepoint,
Channel channel)
Fuses one stack, i.e.
|
abstract <T extends RealType<T> & NativeType<T>> |
ProcessFusion.fuseStack(T type,
InterpolatorFactory<T,RandomAccessible<T>> interpolatorFactory,
TimePoint timepoint,
Channel channel) |
| Modifier and Type | Field and Description |
|---|---|
protected Channel |
ChannelProcess.channel |
| Modifier and Type | Method and Description |
|---|---|
Channel |
ChannelProcess.getChannel() |
| Constructor and Description |
|---|
ChannelProcess(Channel channel,
String label) |
| Modifier and Type | Method and Description |
|---|---|
protected static ChannelProcess |
GlobalOptimizationType.getChannelProcessForChannel(List<ChannelProcess> cpList,
Channel c) |
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