Uses of Package mpicbg.models (Fiji Javadocs 0-SNAPSHOT API)

Packages that use mpicbg.models
Package	Description
<Unnamed>
bigwarp
bigwarp.transforms
bunwarpj.trakem2.transform
edu.utexas.clm.archipelago.ijsupport
edu.utexas.clm.archipelago.ijsupport.bottle
ini.trakem2.analysis
ini.trakem2.display
ini.trakem2.utils
lenscorrection
mpicbg.icp
mpicbg.ij
mpicbg.ij.blockmatching
mpicbg.ij.plugin
mpicbg.ij.util
mpicbg.ij.visualization
mpicbg.imagefeatures
mpicbg.imglib.algorithm.transformation
mpicbg.imglib.image.display.imagej
mpicbg.models
mpicbg.panorama
mpicbg.pointdescriptor
mpicbg.pointdescriptor.matcher
mpicbg.pointdescriptor.model
mpicbg.pointdescriptor.similarity
mpicbg.pointdescriptor.test
mpicbg.spim.io
mpicbg.spim.mpicbg
mpicbg.spim.postprocessing.deconvolution
mpicbg.spim.preprocessing
mpicbg.spim.registration
mpicbg.spim.registration.bead
mpicbg.spim.registration.bead.laplace
mpicbg.spim.registration.detection
mpicbg.spim.registration.detection.descriptor
mpicbg.spim.registration.segmentation
mpicbg.stitching
mpicbg.stitching.fusion
mpicbg.trakem2.align
mpicbg.trakem2.align.concurrent
mpicbg.trakem2.transform
mpicbg.util
org.janelia.intensity
org.janelia.thickness.inference
plugin
process
register_virtual_stack
selection
spim.fiji.spimdata.interestpoints
spim.process.interestpointregistration
spim.process.interestpointregistration.geometrichashing
spim.process.interestpointregistration.optimizationtypes

Classes in mpicbg.models used by <Unnamed>
Class and Description

AbstractModel
Abstract class for arbitrary transformation models to be applied to Points in n-dimensional space.

Classes in mpicbg.models used by bigwarp
Class and Description
AbstractModel Abstract class for arbitrary transformation models to be applied to `Points` in n-dimensional space.
CoordinateTransform

Classes in mpicbg.models used by bigwarp.transforms
Class and Description
AbstractAffineModel2D
AbstractAffineModel3D
InvertibleCoordinateTransform
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.

Classes in mpicbg.models used by bunwarpj.trakem2.transform
Class and Description
AbstractModel Abstract class for arbitrary transformation models to be applied to `Points` in n-dimensional space.
CoordinateTransform
IllDefinedDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
NotEnoughDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.

Classes in mpicbg.models used by edu.utexas.clm.archipelago.ijsupport
Class and Description

AbstractAffineModel2D
Classes in mpicbg.models used by edu.utexas.clm.archipelago.ijsupport.bottle
Class and Description

Point
An n-dimensional point.
Classes in mpicbg.models used by ini.trakem2.analysis
Class and Description

AffineModel3D
3d-affine transformation models to be applied to points in 3d-space.
Classes in mpicbg.models used by ini.trakem2.display
Class and Description

CoordinateTransform

NoninvertibleModelException
Signalizes that a AbstractModel is not invertible.
Classes in mpicbg.models used by ini.trakem2.utils
Class and Description

CoordinateTransform

Classes in mpicbg.models used by ini.trakem2.analysis
Class and Description
AffineModel3D 3d-affine transformation models to be applied to points in 3d-space.

Classes in mpicbg.models used by lenscorrection
Class and Description
AbstractAffineModel2D
AbstractModel Abstract class for arbitrary transformation models to be applied to `Points` in n-dimensional space.
CoordinateTransform
IllDefinedDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
NotEnoughDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.

Classes in mpicbg.models used by mpicbg.icp
Class and Description
IllDefinedDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
NotEnoughDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
Point An n-dimensional point.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.

Classes in mpicbg.models used by mpicbg.ij
Class and Description
AffineModel2D 2d-affine transformation models to be applied to points in 2d-space.
CoordinateTransform
IllDefinedDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
InverseCoordinateTransform
InvertibleCoordinateTransform
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
NotEnoughDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
Point An n-dimensional point.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.
TransformMesh Triangular transformation mesh.

Classes in mpicbg.models used by mpicbg.ij.blockmatching
Class and Description
AbstractAffineModel2D
CoordinateTransform
ErrorStatistic
InvertibleCoordinateTransform
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
Point An n-dimensional point.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.

Classes in mpicbg.models used by mpicbg.ij.plugin
Class and Description
AbstractModel Abstract class for arbitrary transformation models to be applied to `Points` in n-dimensional space.
IllDefinedDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
InverseCoordinateTransform
NotEnoughDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.

Classes in mpicbg.models used by mpicbg.ij.util
Class and Description
Point An n-dimensional point.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.

Classes in mpicbg.models used by mpicbg.ij.visualization
Class and Description
Point An n-dimensional point.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.

Classes in mpicbg.models used by mpicbg.imagefeatures
Class and Description
AbstractModel Abstract class for arbitrary transformation models to be applied to `Points` in n-dimensional space.
Point An n-dimensional point.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.

Classes in mpicbg.models used by mpicbg.imglib.algorithm.transformation
Class and Description
Boundable A `CoordinateTransform` that, for a given source interval in n-space, can estimate the target interval in n-space.
InvertibleCoordinateTransform

Classes in mpicbg.models used by mpicbg.imglib.image.display.imagej
Class and Description

InvertibleBoundable

Classes in mpicbg.models used by mpicbg.models
Class and Description
AbstractAffineModel1D
AbstractAffineModel2D
AbstractAffineModel3D
AbstractModel Abstract class for arbitrary transformation models to be applied to `Points` in n-dimensional space.
AbstractMovingLeastSquaresTransform Smooth coordinate transformation interpolating between a set of control points that are maped exactly on top of each other using landmark based deformation by means of Moving Least Squares as described by \citet{SchaeferAl06}.
Affine1D
Affine2D
Affine3D
AffineModel1D
AffineModel2D 2d-affine transformation models to be applied to points in 2d-space.
AffineModel3D 3d-affine transformation models to be applied to points in 3d-space.
Boundable A `CoordinateTransform` that, for a given source interval in n-space, can estimate the target interval in n-space.
ConstantAffineModel1D 1D affine specialization of `ConstantModel`.
ConstantModel Wraps another models but does not pass through calls to `Model.fit(float[][], float[][], float[])`.
CoordinateTransform
CoordinateTransformMap2D A `CoordinateTransform` that is saved as a LUT on integer coordinates.
ErrorStatistic
IdentityModel nd-identity `AbstractModel`.
IllDefinedDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
InterpolatedAffineModel1D 1D affine specialization of `InterpolatedModel`.
InterpolatedAffineModel2D 2D affine specialization of `InterpolatedModel`.
InterpolatedAffineModel3D 3D affine specialization of `InterpolatedModel`.
InterpolatedModel Linearly interpolates between two independent models.
InverseBoundable An `InverseCoordinateTransform` that, for a given source interval in n-space, can estimate the target interval in n-space.
InverseCoordinateTransform
InvertibleBoundable
InvertibleConstantModel Invertible specialization of `ConstantModel`.
InvertibleCoordinateTransform
InvertibleInterpolatedModel Invertible specialization of `InterpolatedModel`.
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
MovingLeastSquaresMesh A transformation mesh that implements a landmark based deformation by means of Moving Least Squares as described by \citet{SchaeferAl06} inspired by the implementation of Johannes Schindelin.
NoninvertibleModelException Signalizes that a `AbstractModel` is not invertible.
NotEnoughDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
Point An n-dimensional point.
PointFactory
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.
PointMatchFactory
RigidModel2D 2d-rigid transformation models to be applied to points in 2d-space.
RigidModel3D
SimilarityModel2D 2d-similarity transformation models to be applied to points in 2d-space.
SimilarityModel3D 3d-rigid transformation models to be applied to points in 3d-space.
Spring A simple spring model.
SpringMesh A `TransformMesh` with all Vertices being interconnected by springs.
Tile
TileConfiguration A configuration of tiles.
TransformList A generic list of transforms
TransformMesh Triangular transformation mesh.
TranslationModel1D 1d-translation `AbstractModel` to be applied to points in 1d-space.
TranslationModel2D 2d-translation `AbstractModel` to be applied to points in 2d-space.
TranslationModel3D
Vertex An n-dimensional `Vertex` being connected to other `Vertices` by `Springs`

Classes in mpicbg.models used by mpicbg.panorama
Class and Description
CoordinateTransform
InverseCoordinateTransform
InvertibleCoordinateTransform
NoninvertibleModelException Signalizes that a `AbstractModel` is not invertible.

Classes in mpicbg.models used by mpicbg.pointdescriptor
Class and Description
Point An n-dimensional point.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.

Classes in mpicbg.models used by mpicbg.pointdescriptor.matcher
Class and Description
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.
RigidModel3D

Classes in mpicbg.models used by mpicbg.pointdescriptor.model
Class and Description
AbstractModel Abstract class for arbitrary transformation models to be applied to `Points` in n-dimensional space.
CoordinateTransform
IllDefinedDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
NotEnoughDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.

Classes in mpicbg.models used by mpicbg.pointdescriptor.similarity
Class and Description
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.

Classes in mpicbg.models used by mpicbg.pointdescriptor.test
Class and Description

Point
An n-dimensional point.
Classes in mpicbg.models used by mpicbg.spim.io
Class and Description

AbstractAffineModel3D

AffineModel3D
3d-affine transformation models to be applied to points in 3d-space.

Classes in mpicbg.models used by mpicbg.spim.mpicbg
Class and Description
AbstractAffineModel3D
IllDefinedDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
NoninvertibleModelException Signalizes that a `AbstractModel` is not invertible.
NotEnoughDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
Point An n-dimensional point.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.
Tile
TileConfiguration A configuration of tiles.

Classes in mpicbg.models used by mpicbg.spim.postprocessing.deconvolution
Class and Description

AbstractAffineModel3D
Classes in mpicbg.models used by mpicbg.spim.preprocessing
Class and Description

AffineModel3D
3d-affine transformation models to be applied to points in 3d-space.
Classes in mpicbg.models used by mpicbg.spim.registration
Class and Description

AbstractAffineModel3D
Classes in mpicbg.models used by mpicbg.spim.registration.bead
Class and Description

AbstractAffineModel3D

Point
An n-dimensional point.
Classes in mpicbg.models used by mpicbg.spim.registration.bead.laplace
Class and Description

NoninvertibleModelException
Signalizes that a AbstractModel is not invertible.

Classes in mpicbg.models used by mpicbg.spim.preprocessing
Class and Description
AffineModel3D 3d-affine transformation models to be applied to points in 3d-space.

Classes in mpicbg.models used by mpicbg.spim.registration.bead.laplace
Class and Description
NoninvertibleModelException Signalizes that a `AbstractModel` is not invertible.

Classes in mpicbg.models used by mpicbg.spim.registration.detection
Class and Description
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
Point An n-dimensional point.
RigidModel3D
Tile

Classes in mpicbg.models used by mpicbg.spim.registration.detection.descriptor
Class and Description
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
Point An n-dimensional point.

Classes in mpicbg.models used by mpicbg.spim.registration.segmentation
Class and Description
AbstractAffineModel3D
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
Point An n-dimensional point.

Classes in mpicbg.models used by mpicbg.stitching
Class and Description
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
Point An n-dimensional point.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.
Tile
TileConfiguration A configuration of tiles.

Classes in mpicbg.models used by mpicbg.stitching.fusion
Class and Description

InvertibleBoundable

Classes in mpicbg.models used by mpicbg.trakem2.align
Class and Description
AbstractModel Abstract class for arbitrary transformation models to be applied to `Points` in n-dimensional space.
Affine2D
AffineModel2D 2d-affine transformation models to be applied to points in 2d-space.
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.
RigidModel2D 2d-rigid transformation models to be applied to points in 2d-space.
SimilarityModel2D 2d-similarity transformation models to be applied to points in 2d-space.
Tile
TileConfiguration A configuration of tiles.
TranslationModel2D 2d-translation `AbstractModel` to be applied to points in 2d-space.

Classes in mpicbg.models used by mpicbg.trakem2.align.concurrent
Class and Description
AbstractModel Abstract class for arbitrary transformation models to be applied to `Points` in n-dimensional space.
Point An n-dimensional point.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.

Classes in mpicbg.models used by mpicbg.trakem2.transform
Class and Description
AffineModel2D 2d-affine transformation models to be applied to points in 2d-space.
AffineModel3D 3d-affine transformation models to be applied to points in 3d-space.
CoordinateTransform
CoordinateTransformList TODO Think about if it should really implement Boundable.
HomographyModel2D 2d-homography `AbstractModel` to be applied to points in 2d-space.
InvertibleCoordinateTransform
InvertibleCoordinateTransformList
MovingLeastSquaresTransform Smooth coordinate transformation interpolating between a set of control points that are maped exactly on top of each other using landmark based deformation by means of Moving Least Squares as described by \citet{SchaeferAl06}.
MovingLeastSquaresTransform2 Alternative implementation of the smooth coordinate transformation interpolating between a set of control points that are maped exactly on top of each other using landmark based deformation by means of Moving Least Squares as described by \citet{SchaeferAl06}.
PolynomialTransform2D
RigidModel2D 2d-rigid transformation models to be applied to points in 2d-space.
SimilarityModel2D 2d-similarity transformation models to be applied to points in 2d-space.
TransformMesh Triangular transformation mesh.
TranslationModel2D 2d-translation `AbstractModel` to be applied to points in 2d-space.
TranslationModel3D

Classes in mpicbg.models used by mpicbg.util
Class and Description
AbstractAffineModel3D
AffineModel3D 3d-affine transformation models to be applied to points in 3d-space.
CoordinateTransform
NoninvertibleModelException Signalizes that a `AbstractModel` is not invertible.
RigidModel3D

Classes in mpicbg.models used by org.janelia.intensity
Class and Description
Affine1D
AffineModel2D 2d-affine transformation models to be applied to points in 2d-space.
CoordinateTransform
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.
Tile

Classes in mpicbg.models used by org.janelia.thickness.inference
Class and Description
IllDefinedDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
NotEnoughDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.

Classes in mpicbg.models used by plugin
Class and Description
AbstractModel Abstract class for arbitrary transformation models to be applied to `Points` in n-dimensional space.
InvertibleBoundable
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.

Classes in mpicbg.models used by process
Class and Description
InvertibleBoundable
InvertibleCoordinateTransform
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
NotEnoughDataPointsException Signalizes that there were not enough data points available to estimate the `AbstractModel`.
Point An n-dimensional point.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.
Tile

Classes in mpicbg.models used by register_virtual_stack
Class and Description
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.

Classes in mpicbg.models used by selection
Class and Description
Point An n-dimensional point.
PointMatch A link between two `Points` that are expected to be ideally at the same location in the world coordinate space.

Classes in mpicbg.models used by spim.fiji.spimdata.interestpoints
Class and Description

Point
An n-dimensional point.

Classes in mpicbg.models used by spim.process.interestpointregistration
Class and Description
AbstractAffineModel3D
AbstractModel Abstract class for arbitrary transformation models to be applied to `Points` in n-dimensional space.
Affine3D
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
Point An n-dimensional point.
RigidModel3D
Tile
TileConfiguration A configuration of tiles.

Classes in mpicbg.models used by spim.process.interestpointregistration.geometrichashing
Class and Description

Point
An n-dimensional point.

Classes in mpicbg.models used by spim.process.interestpointregistration.optimizationtypes
Class and Description
AbstractModel Abstract class for arbitrary transformation models to be applied to `Points` in n-dimensional space.
Model `CoordinateTransform` whose parameters can be estimated through a least-squares(like) fit.
Tile

Uses of Packagempicbg.models

Uses of Package
mpicbg.models