Uses of Class mpicbg.models.Point (Fiji Javadocs 0-SNAPSHOT API)

Packages that use Point
Package	Description
edu.utexas.clm.archipelago.ijsupport.bottle
mpicbg.icp
mpicbg.ij
mpicbg.ij.blockmatching
mpicbg.ij.util
mpicbg.ij.visualization
mpicbg.imagefeatures
mpicbg.models
mpicbg.pointdescriptor
mpicbg.pointdescriptor.test
mpicbg.spim.mpicbg
mpicbg.spim.registration.bead
mpicbg.spim.registration.detection
mpicbg.spim.registration.detection.descriptor
mpicbg.spim.registration.segmentation
mpicbg.stitching
mpicbg.trakem2.align.concurrent
process
selection
spim.fiji.spimdata.interestpoints
spim.process.interestpointregistration
spim.process.interestpointregistration.geometrichashing

Uses of Point in edu.utexas.clm.archipelago.ijsupport.bottle

Subclasses of Point in edu.utexas.clm.archipelago.ijsupport.bottle
Modifier and Type	Class and Description
`class`	`PointBottle.IdPoint`

Methods in edu.utexas.clm.archipelago.ijsupport.bottle that return Point
Modifier and Type	Method and Description
`static Point`	PointBottle.`getPoint(long orig, Point localPoint)`
`Point`	PointBottle.`unBottle(MessageXC xc)`

Methods in edu.utexas.clm.archipelago.ijsupport.bottle that return types with arguments of type Point
Modifier and Type	Method and Description
`Bottle<Point>`	PointBottler.`bottle(Object o, MessageXC xc)`

Methods in edu.utexas.clm.archipelago.ijsupport.bottle with parameters of type Point
Modifier and Type	Method and Description
`static Point`	PointBottle.`getPoint(long orig, Point localPoint)`

Constructors in edu.utexas.clm.archipelago.ijsupport.bottle with parameters of type Point
Constructor and Description
`IdPoint(long id, Point pt)`
`PointBottle(Point point, boolean isOrigin)` Creates a Bottle containing a Point

Uses of Point in mpicbg.icp

Classes in mpicbg.icp with type parameters of type Point
Modifier and Type	Class and Description
`class`	`ICP<P extends Point & Leaf<P>>` Implementation of the ICP
`interface`	`PointMatchIdentification<P extends Point & Leaf<P>>`
`class`	`SimplePointMatchIdentification<P extends Point & Leaf<P>>`

Methods in mpicbg.icp with parameters of type Point
Modifier and Type	Method and Description
`protected static ArrayList<Integer>`	ICP.`getOccurences(Point pointTarget, Point pointReference, List<PointMatch> list)` Computes if one `Point` pair occurs more than once in a `List` of `PointMatch`es

Uses of Point in mpicbg.ij

Fields in mpicbg.ij declared as Point
Modifier and Type	Field and Description
`protected Point[]`	InteractiveMapping.`p`
`protected Point[]`	InteractiveInvertibleCoordinateTransform.`p`
`protected Point[]`	InteractiveMapping.`q`
`protected Point[]`	InteractiveInvertibleCoordinateTransform.`q`

Fields in mpicbg.ij with type parameters of type Point
Modifier and Type	Field and Description
`protected ArrayList<Point>`	InteractiveMapping.`hooks`

Uses of Point in mpicbg.ij.blockmatching

Method parameters in mpicbg.ij.blockmatching with type arguments of type Point
Modifier and Type	Method and Description
`static void`	BlockMatching.`matchByMaximalPMCC(ij.process.FloatProcessor source, ij.process.FloatProcessor target, ij.process.FloatProcessor sourceMask, ij.process.FloatProcessor targetMask, double scale, CoordinateTransform transform, int blockRadiusX, int blockRadiusY, int searchRadiusX, int searchRadiusY, float minR, float rod, float maxCurvature, Collection<? extends Point> sourcePoints, Collection<PointMatch> sourceMatches, ErrorStatistic observer)` Estimate point correspondences for a `Collection` of `Points` among two images that are approximately related by an `InvertibleCoordinateTransform` using the Pearson product-moment correlation coefficient (PMCC) r of pixel intensities as similarity measure.
`static void`	BlockMatching.`matchByMaximalPMCC(ij.process.FloatProcessor source, ij.process.FloatProcessor target, ij.process.FloatProcessor sourceMask, ij.process.FloatProcessor targetMask, float scale, CoordinateTransform transform, int blockRadiusX, int blockRadiusY, int searchRadiusX, int searchRadiusY, Collection<? extends Point> sourcePoints, Collection<PointMatch> sourceMatches, ErrorStatistic observer)` Estimate point correspondences for a `Collection` of `Points` among two images that are approximately related by an `InvertibleCoordinateTransform` using the Pearson product-moment correlation coefficient (PMCC) r of pixel intensities as similarity measure.
`static void`	BlockMatching.`matchByMaximalPMCCFromPreScaledImages(ij.process.FloatProcessor source_scaled, ij.process.FloatProcessor target_scaled, double scale, int blockRadiusX, int blockRadiusY, int searchRadiusX, int searchRadiusY, float minR, float rod, float maxCurvature, Collection<? extends Point> sourcePoints, Collection<PointMatch> sourceMatches)` Estimate point correspondences for a `Collection` of `Points` among two images that are approximately related by an `InvertibleCoordinateTransform` using the Pearson product-moment correlation coefficient (PMCC) r of pixel intensities as similarity measure.
`static void`	BlockMatching.`matchByMinimalSquareDifference(ij.process.FloatProcessor source, ij.process.FloatProcessor target, InvertibleCoordinateTransform transform, int blockRadiusX, int blockRadiusY, int searchRadiusX, int searchRadiusY, Collection<? extends Point> sourcePoints, Collection<PointMatch> sourceMatches)` Estimate point correspondences for a `Collection` of `Points` among two images that are approximately related by an `InvertibleCoordinateTransform` using the square difference of pixel intensities as a similarity measure.

Uses of Point in mpicbg.ij.util

Methods in mpicbg.ij.util that return types with arguments of type Point
Modifier and Type	Method and Description
`static List<Point>`	Util.`pointRoiToPoints(PointRoi roi)`

Method parameters in mpicbg.ij.util with type arguments of type Point
Modifier and Type	Method and Description
`static PointRoi`	Util.`pointsToPointRoi(Collection<? extends Point> points)` Create an ImageJ `PointRoi` from a `Collection` of `Points`.

Uses of Point in mpicbg.ij.visualization

Method parameters in mpicbg.ij.visualization with type arguments of type Point
Modifier and Type	Method and Description
`static void`	PointVis.`drawLocalPoints(ij.process.ImageProcessor ip, Collection<? extends Point> points, Color color, int width)`
`static void`	PointVis.`drawLocalPoints(ij.process.ImageProcessor ip, Collection<? extends Point> points, Color color, int width, Rectangle srcRect, double magnification)`
`static void`	PointVis.`drawWorldPoints(ij.process.ImageProcessor ip, Collection<? extends Point> points, Color color, int width)`
`static void`	PointVis.`drawWorldPoints(ij.process.ImageProcessor ip, Collection<? extends Point> points, Color color, int width, Rectangle srcRect, double magnification)`

Uses of Point in mpicbg.imagefeatures

Method parameters in mpicbg.imagefeatures with type arguments of type Point
Modifier and Type	Method and Description
`static List<PointMatch>`	FloatArray2DMOPS.`createMatches(List<Feature> fs1, List<Feature> fs2, double rod, HashMap<Point,Feature> m1, HashMap<Point,Feature> m2)` Identify corresponding features.
`static List<PointMatch>`	FloatArray2DMOPS.`createMatches(List<Feature> fs1, List<Feature> fs2, double rod, HashMap<Point,Feature> m1, HashMap<Point,Feature> m2)` Identify corresponding features.

Uses of Point in mpicbg.models

Classes in mpicbg.models with type parameters of type Point
Modifier and Type	Interface and Description
`interface`	`PointFactory<P extends Point>`

Subclasses of Point in mpicbg.models
Modifier and Type	Class and Description
`class`	`Vertex` An n-dimensional `Vertex` being connected to other `Vertices` by `Springs`

Fields in mpicbg.models declared as Point
Modifier and Type	Field and Description
`protected Point`	PointMatch.`p1`
`protected Point`	PointMatch.`p2`

Fields in mpicbg.models with type parameters of type Point
Modifier and Type	Field and Description
`protected static PointFactory<Point>`	TransformMesh.`defaultPointFactory`

Methods in mpicbg.models with type parameters of type Point
Modifier and Type	Method and Description
`static <P extends Point> void`	Point.`apply(CoordinateTransform t, Iterable<P> points)` Apply a `CoordinateTransform` to an `Iterable` collection of `Points`.

Methods in mpicbg.models that return Point
Modifier and Type	Method and Description
`Point`	Point.`clone()` Clone this `Point` instance.
`Point`	PointMatch.`getP1()`
`Point`	PointMatch.`getP2()`

Methods in mpicbg.models with parameters of type Point
Modifier and Type	Method and Description
`void`	Spring.`calculateForce(Point p1, Point p2, double[] force)` Estimate the force vector effective to `p1` if this `Spring` would connect both `Vertices`.
`M`	PointMatchFactory.`createPointMatch(Point p1, Point p2)`
`M`	PointMatchFactory.`createPointMatch(Point p1, Point p2, double w)`
`static double`	Point.`distance(Point p1, Point p2)` Estimate the Euclidean distance of two `Points` in world space.
`static double`	Point.`localDistance(Point p1, Point p2)` Estimate the Euclidean distance of two `Points` in local space.
`static double`	Point.`squareDistance(Point p1, Point p2)` Estimate the square Euclidean distance of two `Points` in world space.
`static double`	Point.`squareLocalDistance(Point p1, Point p2)` Estimate the square Euclidean distance of two `Points` in local space.

Method parameters in mpicbg.models with type arguments of type Point
Modifier and Type	Method and Description
`static void`	Point.`applyInverse(InverseCoordinateTransform t, Iterable<Point> points)` Apply an `InverseCoordinateTransform` to an `Iterable` collection of `Points`.
`static void`	PointMatch.`cloneSourcePoints(Collection<PointMatch> matches, Collection<Point> sourcePoints)`
`static void`	PointMatch.`cloneTargetPoints(Collection<PointMatch> matches, Collection<Point> targetPoints)`
`Collection<PointMatch>`	Model.`icp(List<Point> p, List<Point> q)` Estimate the best model in terms of the Iterative Closest Point Algorithm \cite{Zhang94} for matching two point clouds into each other.
`Collection<PointMatch>`	Model.`icp(List<Point> p, List<Point> q)` Estimate the best model in terms of the Iterative Closest Point Algorithm \cite{Zhang94} for matching two point clouds into each other.
`Collection<PointMatch>`	AbstractModel.`icp(List<Point> p, List<Point> q)` Estimate the best model in terms of the Iterative Closest Point Algorithm \cite{Zhang94} for matching two point clouds into each other.
`Collection<PointMatch>`	AbstractModel.`icp(List<Point> p, List<Point> q)` Estimate the best model in terms of the Iterative Closest Point Algorithm \cite{Zhang94} for matching two point clouds into each other.
`static boolean`	Transforms.`isIdentity(CoordinateTransform t, Iterable<Point> points, double tolerance)` Check if a `CoordinateTransform` is the identity transform with respect to a set of `Points` and a given tolerance.
`static void`	PointMatch.`sourcePoints(Collection<PointMatch> matches, Collection<Point> sourcePoints)`
`static void`	PointMatch.`targetPoints(Collection<PointMatch> matches, Collection<Point> targetPoints)`

Constructors in mpicbg.models with parameters of type Point
Constructor and Description
`PointMatch(Point p1, Point p2)` Constructor Create a `PointMatch` without weight.
`PointMatch(Point p1, Point p2, double weight)` Constructor Create a `PointMatch` with one weight.
`PointMatch(Point p1, Point p2, double[] weights)` Constructor Create a `PointMatch` with an Array of weights.
`PointMatch(Point p1, Point p2, double[] weights, double strength)` Constructor Create a `PointMatch` with an Array of weights and a strength.
`PointMatch(Point p1, Point p2, double weight, double strength)` Constructor Create a `PointMatch` with one weight and strength.
`Spring(Point p1, Point p2)` Constructor Create a `Spring` between two `Points` without weight.
`Spring(Point p1, Point p2, double weight)` Constructor Create a `Spring` between two `Points` with one weight.
`Spring(Point p1, Point p2, double[] weights)` Constructor Create a `Spring` between two `Points` with an Array of weights.
`Spring(Point p1, Point p2, double[] weights, double maxStretch)` Constructor Create a `Spring` between two `Points` with an Array of weights.
`Spring(Point p1, Point p2, double weight, double maxStretch)` Constructor Create a `Spring` between two `Points` with one weight.
`Vertex(Point point)` Constructor The `Vertex` takes over the coordinates of the `Point` by pointer.

Uses of Point in mpicbg.pointdescriptor

Classes in mpicbg.pointdescriptor with type parameters of type Point
Modifier and Type	Class and Description
`class`	`AbstractPointDescriptor<P extends Point,F extends AbstractPointDescriptor<P,F>>`
`class`	`LocalCoordinateSystemPointDescriptor<P extends Point>`
`class`	`ModelPointDescriptor<P extends Point>`
`class`	`SimplePointDescriptor<P extends Point>`

Subclasses of Point in mpicbg.pointdescriptor
Modifier and Type	Class and Description
`class`	`LinkedPoint<P>`

Methods in mpicbg.pointdescriptor that return Point
Modifier and Type	Method and Description
`Point`	AbstractPointDescriptor.`getDescriptorPoint(int index)` Returns a certain nearest neighbor (relative to the basis point) of this `AbstractPointDescriptor`

Uses of Point in mpicbg.pointdescriptor.test

Classes in mpicbg.pointdescriptor.test with type parameters of type Point
Modifier and Type	Class and Description
`class`	`VirtualPointNode<P extends Point>`

Subclasses of Point in mpicbg.pointdescriptor.test
Modifier and Type	Class and Description
`class`	`PointNode`

Methods in mpicbg.pointdescriptor.test with type parameters of type Point
Modifier and Type	Method and Description
`static <P extends Point> ArrayList<LocalCoordinateSystemPointDescriptor<P>>`	TestPointDescriptor.`createLocalCoordinateSystemPointDescriptors(KDTree<VirtualPointNode<P>> tree, ArrayList<VirtualPointNode<P>> basisPoints, int numNeighbors, boolean normalize)`
`static <P extends Point> ArrayList<ModelPointDescriptor<P>>`	TestPointDescriptor.`createModelPointDescriptors(KDTree<VirtualPointNode<P>> tree, ArrayList<VirtualPointNode<P>> basisPoints, int numNeighbors, TranslationInvariantModel<?> model, Matcher matcher, SimilarityMeasure similarityMeasure)`
`static <P extends Point> ArrayList<VirtualPointNode<P>>`	TestPointDescriptor.`createVirtualNodeList(ArrayList<P> points)`

Methods in mpicbg.pointdescriptor.test with parameters of type Point
Modifier and Type	Method and Description
`protected static void`	TestPointDescriptor.`add(Point p1, Point p2)`
`protected static boolean`	TestPointDescriptor.`isCorrect(Point a, Point b)`

Method parameters in mpicbg.pointdescriptor.test with type arguments of type Point
Modifier and Type	Method and Description
`protected void`	TestPointDescriptor.`addAdvancedPoints(ArrayList<Point> points1, ArrayList<Point> points2)`
`protected void`	TestPointDescriptor.`addAdvancedPoints(ArrayList<Point> points1, ArrayList<Point> points2)`
`protected void`	TestPointDescriptor.`addSimplePoints(ArrayList<Point> points1, ArrayList<Point> points2)`
`protected void`	TestPointDescriptor.`addSimplePoints(ArrayList<Point> points1, ArrayList<Point> points2)`
`protected void`	TestPointDescriptor.`applyTransform(ArrayList<Point> points)`

Constructors in mpicbg.pointdescriptor.test with parameters of type Point
Constructor and Description
`PointNode(Point p)`

Uses of Point in mpicbg.spim.mpicbg

Classes in mpicbg.spim.mpicbg with type parameters of type Point
Modifier and Type Class and Description

class PointMatchGeneric<P extends Point>
Uses of Point in mpicbg.spim.registration.bead

Subclasses of Point in mpicbg.spim.registration.bead
Modifier and Type Class and Description

class Bead

Classes in mpicbg.spim.mpicbg with type parameters of type Point
Modifier and Type	Class and Description
`class`	`PointMatchGeneric<P extends Point>`

Subclasses of Point in mpicbg.spim.registration.bead
Modifier and Type	Class and Description
`class`	`Bead`

Uses of Point in mpicbg.spim.registration.detection

Subclasses of Point in mpicbg.spim.registration.detection
Modifier and Type	Class and Description
`class`	`AbstractDetection<T extends AbstractDetection<T>>`
`class`	`DetectionView<S extends DetectionIdentification<S,T>,T extends DetectionView<S,T>>`

Methods in mpicbg.spim.registration.detection with parameters of type Point
Modifier and Type	Method and Description
`double`	AbstractDetection.`getDistance(Point point2)`

Uses of Point in mpicbg.spim.registration.detection.descriptor

Methods in mpicbg.spim.registration.detection.descriptor with type parameters of type Point
Modifier and Type	Method and Description
`static <P extends Point & Leaf<P>> ArrayList<LocalCoordinateSystemPointDescriptor<P>>`	CoordSystem3d.`createLocalCoordinateSystemPointDescriptors(KDTree<P> tree, ArrayList<P> basisPoints, int numNeighbors, boolean normalize)`
`static <P extends Point & Leaf<P>> ArrayList<ModelPointDescriptor<P>>`	ModelBased3d.`createModelPointDescriptors(KDTree<P> tree, ArrayList<P> basisPoints, int numNeighbors, TranslationInvariantModel<?> model, Matcher matcher, SimilarityMeasure similarityMeasure)`

Uses of Point in mpicbg.spim.registration.segmentation

Subclasses of Point in mpicbg.spim.registration.segmentation
Modifier and Type Class and Description

class Nucleus

Subclasses of Point in mpicbg.spim.registration.segmentation
Modifier and Type	Class and Description
`class`	`Nucleus`

Uses of Point in mpicbg.stitching

Constructors in mpicbg.stitching with parameters of type Point
Constructor and Description
`PointMatchStitching(Point p1, Point p2, float weight, ComparePair pair)` Constructor Create a `PointMatch` with one weight.

Uses of Point in mpicbg.trakem2.align.concurrent

Fields in mpicbg.trakem2.align.concurrent with type parameters of type Point
Modifier and Type	Field and Description
`Collection<? extends Point>`	BlockMatchPairCallable.BlockMatchResults.`v1`
`Collection<? extends Point>`	BlockMatchPairCallable.BlockMatchResults.`v2`

Constructor parameters in mpicbg.trakem2.align.concurrent with type arguments of type Point
Constructor and Description
`BlockMatchPairCallable(Triple<Integer,Integer,AbstractModel<?>> pair, List<Layer> layerRange, boolean layer1Fixed, boolean layer2Fixed, Filter<Patch> filter, ElasticLayerAlignment.Param param, Collection<? extends Point> sourcePoints1, Collection<? extends Point> sourcePoints2, Rectangle box)`
`BlockMatchPairCallable(Triple<Integer,Integer,AbstractModel<?>> pair, List<Layer> layerRange, boolean layer1Fixed, boolean layer2Fixed, Filter<Patch> filter, ElasticLayerAlignment.Param param, Collection<? extends Point> sourcePoints1, Collection<? extends Point> sourcePoints2, Rectangle box)`
`BlockMatchResults(Collection<? extends Point> v1, Collection<? extends Point> v2, Collection<PointMatch> pm12, Collection<PointMatch> pm21, boolean layer1Fixed, boolean layer2Fixed, Triple<Integer,Integer,AbstractModel<?>> pair)`
`BlockMatchResults(Collection<? extends Point> v1, Collection<? extends Point> v2, Collection<PointMatch> pm12, Collection<PointMatch> pm21, boolean layer1Fixed, boolean layer2Fixed, Triple<Integer,Integer,AbstractModel<?>> pair)`

Uses of Point in process

Subclasses of Point in process
Modifier and Type Class and Description

class Particle

Subclasses of Point in process
Modifier and Type	Class and Description
`class`	`Particle`

Uses of Point in selection

Methods in selection with parameters of type Point
Modifier and Type	Method and Description
`static String`	Select_Points.`getStringForPoint(Point p, double r)`

Constructors in selection with parameters of type Point
Constructor and Description
`ExtendedPointMatch(Point p1, Point p2, double radius1L, double radius1W, double radius2L, double radius2W)`

Uses of Point in spim.fiji.spimdata.interestpoints

Subclasses of Point in spim.fiji.spimdata.interestpoints
Modifier and Type	Class and Description
`class`	`InterestPoint` Single interest point, extends mpicbg Point by an id
`class`	`InterestPointValue`

Uses of Point in spim.process.interestpointregistration

Subclasses of Point in spim.process.interestpointregistration
Modifier and Type Class and Description

class Detection

Methods in spim.process.interestpointregistration with parameters of type Point
Modifier and Type Method and Description

double Detection.getDistance(Point point2)

Subclasses of Point in spim.process.interestpointregistration
Modifier and Type	Class and Description
`class`	`Detection`

Methods in spim.process.interestpointregistration with parameters of type Point
Modifier and Type	Method and Description
`double`	Detection.`getDistance(Point point2)`

Uses of Point in spim.process.interestpointregistration.geometrichashing

Methods in spim.process.interestpointregistration.geometrichashing with type parameters of type Point
Modifier and Type	Method and Description
`static <P extends Point & Leaf<P>> ArrayList<LocalCoordinateSystemPointDescriptor<P>>`	GeometricHasher.`createLocalCoordinateSystemPointDescriptors(KDTree<P> tree, ArrayList<P> basisPoints, int numNeighbors, boolean normalize)`

Uses of Classmpicbg.models.Point

Uses of Point in edu.utexas.clm.archipelago.ijsupport.bottle

Uses of Point in mpicbg.icp

Uses of Point in mpicbg.ij

Uses of Point in mpicbg.ij.blockmatching

Uses of Point in mpicbg.ij.util

Uses of Point in mpicbg.ij.visualization

Uses of Point in mpicbg.imagefeatures

Uses of Point in mpicbg.models

Uses of Point in mpicbg.pointdescriptor

Uses of Point in mpicbg.pointdescriptor.test

Uses of Point in mpicbg.spim.mpicbg

Uses of Point in mpicbg.spim.registration.bead

Uses of Point in mpicbg.spim.registration.detection

Uses of Point in mpicbg.spim.registration.detection.descriptor

Uses of Point in mpicbg.spim.registration.segmentation

Uses of Point in mpicbg.stitching

Uses of Point in mpicbg.trakem2.align.concurrent

Uses of Point in process

Uses of Point in selection

Uses of Point in spim.fiji.spimdata.interestpoints

Uses of Point in spim.process.interestpointregistration

Uses of Point in spim.process.interestpointregistration.geometrichashing

Uses of Class
mpicbg.models.Point