| Modifier and Type | Class and Description |
|---|---|
class |
Curvatures_<T extends RealType<T>> |
class |
Frangi_<T extends RealType<T>> |
static class |
Frangi_.VesselnessCalculator<T extends RealType<T>>
A helper class for calculating the "vesselness" of an
image, designed for use from ExecutorService
|
| Modifier and Type | Class and Description |
|---|---|
class |
And<T extends RealType<T>>
TODO
|
class |
AxisLessThan<T extends RealType<T>>
TODO
|
interface |
Condition<T extends RealType<T>>
TODO
|
class |
Not<T extends RealType<T>>
TODO
|
class |
Or<T extends RealType<T>>
TODO
|
class |
PixelOnBorder<T extends RealType<T>>
TODO
|
class |
ValueGreaterThan<T extends RealType<T>>
TODO
|
class |
ValueLessThan<T extends RealType<T>>
TODO
|
| Modifier and Type | Interface and Description |
|---|---|
interface |
RealFunction<T extends RealType<T>>
TODO
|
| Modifier and Type | Method and Description |
|---|---|
void |
RealFunction.compute(T[] inputs,
T output) |
| Modifier and Type | Class and Description |
|---|---|
class |
UnaryOperatorFunction<T extends RealType<T>>
TODO
|
| Modifier and Type | Method and Description |
|---|---|
void |
UnaryOperatorFunction.compute(T[] inputs,
T output) |
| Modifier and Type | Class and Description |
|---|---|
class |
BinaryOperatorFunction<T extends RealType<T>>
TODO
|
| Modifier and Type | Method and Description |
|---|---|
void |
BinaryOperatorFunction.compute(T[] inputs,
T output) |
| Modifier and Type | Class and Description |
|---|---|
class |
AvgFunction<T extends RealType<T>>
TODO
|
class |
ConstFunction<T extends RealType<T>>
TODO
|
class |
NullFunction<T extends RealType<T>>
NullFunction is a function that does not change the output.
|
| Modifier and Type | Method and Description |
|---|---|
void |
NullFunction.compute(T[] inputs,
T output) |
void |
ConstFunction.compute(T[] inputs,
T output) |
void |
AvgFunction.compute(T[] inputs,
T output) |
| Modifier and Type | Class and Description |
|---|---|
class |
AssignOperation<T extends RealType<T>>
An AssignOperation computes values in an output image.
|
class |
MultiImageIterator<T extends RealType<T>> |
| Modifier and Type | Class and Description |
|---|---|
class |
ImgLibVolume<T extends RealType<T>>
This class encapsulates an mpicbg.imglib.Image object, for use in Marching Cubes.
|
| Modifier and Type | Method and Description |
|---|---|
<T extends RealType<T>> |
MCTriangulator.getTriangles(Image<T> img,
int threshold,
float[] origin) |
| Modifier and Type | Class and Description |
|---|---|
class |
ROIAlgorithm<T extends RealType<T>,S extends RealType<S>>
ROIAlgorithm implements a framework against which to build operations of one image against
another, like convolution, cross-correlation, or morphological operations.
|
class |
ROIAlgorithm<T extends RealType<T>,S extends RealType<S>>
ROIAlgorithm implements a framework against which to build operations of one image against
another, like convolution, cross-correlation, or morphological operations.
|
| Modifier and Type | Class and Description |
|---|---|
class |
CrossCorrelation<S extends RealType<S>,T extends RealType<T>>
TODO
|
class |
CrossCorrelation<S extends RealType<S>,T extends RealType<T>>
TODO
|
| Modifier and Type | Method and Description |
|---|---|
protected <R extends RealType<R>> |
CrossCorrelation.computeAvg(Image<R> image) |
static <S extends RealType<S>,T extends RealType<T>> |
CrossCorrelation.correlate(Image<S> img1,
Image<T> img2) |
static <S extends RealType<S>,T extends RealType<T>> |
CrossCorrelation.correlate(Image<S> img1,
Image<T> img2) |
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractRegionalExtremaFinder<T extends RealType<T>>
TODO
|
class |
RegionalExtremaFactory<T extends RealType<T>>
Provides a way for the user to automatically create the appropriate RegionalMaximaFinder class
without having to deal with the dimensionality.
|
interface |
RegionalExtremaFinder<T extends RealType<T>>
Provides a quick algorithm for finding regional maxima in 2- or 3-dimensional images.
|
class |
RegionalExtremaFinder2D<T extends RealType<T>>
*
|
class |
RegionalExtremaFinder3D<T extends RealType<T>>
This class finds the regional extrema of a 3 dimensional image.
|
| Modifier and Type | Field and Description |
|---|---|
protected T |
AbstractRegionalExtremaFinder.threshold |
| Modifier and Type | Class and Description |
|---|---|
class |
FourierConvolution<T extends RealType<T>,S extends RealType<S>>
TODO
|
class |
FourierConvolution<T extends RealType<T>,S extends RealType<S>>
TODO
|
class |
FourierTransform<T extends RealType<T>,S extends ComplexType<S>>
TODO
|
class |
InverseFourierConvolution<T extends RealType<T>,S extends RealType<S>>
Convolve an image with the inverse of a kernel which is division in the Fourier domain.
|
class |
InverseFourierConvolution<T extends RealType<T>,S extends RealType<S>>
Convolve an image with the inverse of a kernel which is division in the Fourier domain.
|
class |
InverseFourierTransform<T extends RealType<T>,S extends ComplexType<S>>
TODO
|
class |
PhaseCorrelation<T extends RealType<T>,S extends RealType<S>>
TODO
|
class |
PhaseCorrelation<T extends RealType<T>,S extends RealType<S>>
TODO
|
| Modifier and Type | Method and Description |
|---|---|
static <T extends RealType<T>,S extends ComplexType<S>> |
FFTFunctions.computeFFT(Image<T> img,
S complexType,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory,
int[] imageOffset,
int[] imageSize,
int numThreads,
boolean scale) |
static <T extends RealType<T>,S extends ComplexType<S>> |
FFTFunctions.computeInverseFFT(Image<S> complex,
T type,
int numThreads,
boolean scale,
boolean cropBack,
int[] originalSize,
int[] originalOffset,
float additionalNormalization) |
static <T extends RealType<T>> |
FourierConvolution.getGaussianKernel(ImageFactory<T> imgFactory,
double[] sigma) |
static <T extends RealType<T>> |
FourierConvolution.getGaussianKernel(ImageFactory<T> imgFactory,
double sigma,
int numDimensions) |
static <T extends RealType<T>,S extends RealType<S>> |
PhaseCorrelation.testCrossCorrelation(int[] shift,
Image<T> image1,
Image<S> image2) |
static <T extends RealType<T>,S extends RealType<S>> |
PhaseCorrelation.testCrossCorrelation(int[] shift,
Image<T> image1,
Image<S> image2) |
static <T extends RealType<T>,S extends RealType<S>> |
PhaseCorrelation.testCrossCorrelation(int[] shift,
Image<T> image1,
Image<S> image2,
int minOverlapPx) |
static <T extends RealType<T>,S extends RealType<S>> |
PhaseCorrelation.testCrossCorrelation(int[] shift,
Image<T> image1,
Image<S> image2,
int minOverlapPx) |
static <T extends RealType<T>,S extends RealType<S>> |
PhaseCorrelation.testCrossCorrelation(int[] shift,
Image<T> image1,
Image<S> image2,
int[] minOverlapPx) |
static <T extends RealType<T>,S extends RealType<S>> |
PhaseCorrelation.testCrossCorrelation(int[] shift,
Image<T> image1,
Image<S> image2,
int[] minOverlapPx) |
static <T extends RealType<T>,S extends RealType<S>> |
PhaseCorrelation.testCrossCorrelation(int[] shift,
Image<T> image1,
Image<S> image2,
int[] minOverlapPx,
long[] numPixels) |
static <T extends RealType<T>,S extends RealType<S>> |
PhaseCorrelation.testCrossCorrelation(int[] shift,
Image<T> image1,
Image<S> image2,
int[] minOverlapPx,
long[] numPixels) |
static <T extends RealType<T>,S extends RealType<S>> |
PhaseCorrelation.testCrossCorrelation(int[] shift,
Image<T> image1,
Image<S> image2,
int minOverlapPx,
long[] numPixels) |
static <T extends RealType<T>,S extends RealType<S>> |
PhaseCorrelation.testCrossCorrelation(int[] shift,
Image<T> image1,
Image<S> image2,
int minOverlapPx,
long[] numPixels) |
| Modifier and Type | Class and Description |
|---|---|
class |
FloydSteinbergDithering<T extends RealType<T>>
TODO
|
| Modifier and Type | Method and Description |
|---|---|
static <T extends RealType<T>> |
FloydSteinbergDithering.getThreshold(Image<T> img) |
| Modifier and Type | Class and Description |
|---|---|
class |
NormMinMax<A extends RealType<A>>
TODO
|
class |
SubtractNormReal<A extends RealType<A>,B extends RealType<B>,C extends RealType<C>>
TODO
|
class |
SubtractNormReal<A extends RealType<A>,B extends RealType<B>,C extends RealType<C>>
TODO
|
class |
SubtractNormReal<A extends RealType<A>,B extends RealType<B>,C extends RealType<C>>
TODO
|
class |
SubtractReal<A extends RealType<A>,B extends RealType<B>,C extends RealType<C>>
TODO
|
class |
SubtractReal<A extends RealType<A>,B extends RealType<B>,C extends RealType<C>>
TODO
|
class |
SubtractReal<A extends RealType<A>,B extends RealType<B>,C extends RealType<C>>
TODO
|
| Modifier and Type | Class and Description |
|---|---|
class |
DownSample<T extends RealType<T>>
TODO
|
class |
GaussianConvolutionReal<T extends RealType<T>>
TODO
|
| Modifier and Type | Class and Description |
|---|---|
class |
RealHistogramBinFactory<T extends RealType<T>>
TODO
|
| Modifier and Type | Class and Description |
|---|---|
class |
ScaleAreaAveraging2d<T extends RealType<T>,R extends RealType<R>>
TODO
|
class |
ScaleAreaAveraging2d<T extends RealType<T>,R extends RealType<R>>
TODO
|
| Modifier and Type | Class and Description |
|---|---|
class |
GradientWatershed<T extends RealType<T>,L extends Comparable<L>>
This class labels an image where the objects in question have
edges that are defined by sharp intensity gradients and have
centers of high intensity and a low intensity background.
|
| Modifier and Type | Class and Description |
|---|---|
class |
NormalizeImageFloat<T extends RealType<T>>
Normalizes a given
Image so that the sum of all of its pixels is equal to one
(or approximately so). |
class |
NormalizeImageMinMax<T extends RealType<T>>
TODO
|
class |
PickImagePeaks<T extends RealType<T>>
This class implements a very simple peak-picker, with optional ellipsoidal peak suppression.
|
| Modifier and Type | Method and Description |
|---|---|
static <T extends RealType<T>> |
NormalizeImageMinMax.sumImage(Image<T> image) |
static <T extends RealType<T>> |
NormalizeImageFloat.sumImage(Image<T> image) |
| Modifier and Type | Class and Description |
|---|---|
class |
AnisotropicDiffusion<T extends RealType<T>>
Perona & Malik Anisotropic diffusion
|
| Modifier and Type | Class and Description |
|---|---|
class |
GaussianPeakFitterND<T extends RealType<T>>
A simple class fit a gaussian to the peaks in a n-dim, 0-background
image.
|
| Modifier and Type | Class and Description |
|---|---|
class |
DirectConvolution<T extends RealType<T>,R extends RealType<R>,S extends RealType<S>>
DirectConvolution is an ROIAlgorithm designed to do both convolution and cross-correlation
by operating on the image and kernel directly, rather than by using such time-saving tricks as
FFT.
|
class |
DirectConvolution<T extends RealType<T>,R extends RealType<R>,S extends RealType<S>>
DirectConvolution is an ROIAlgorithm designed to do both convolution and cross-correlation
by operating on the image and kernel directly, rather than by using such time-saving tricks as
FFT.
|
class |
DirectConvolution<T extends RealType<T>,R extends RealType<R>,S extends RealType<S>>
DirectConvolution is an ROIAlgorithm designed to do both convolution and cross-correlation
by operating on the image and kernel directly, rather than by using such time-saving tricks as
FFT.
|
class |
DirectCrossCorr<T extends RealType<T>,R extends RealType<R>,S extends RealType<S>>
DirectCrossCorr performs direct cross-correlation of a kernel against an image.
|
class |
DirectCrossCorr<T extends RealType<T>,R extends RealType<R>,S extends RealType<S>>
DirectCrossCorr performs direct cross-correlation of a kernel against an image.
|
class |
DirectCrossCorr<T extends RealType<T>,R extends RealType<R>,S extends RealType<S>>
DirectCrossCorr performs direct cross-correlation of a kernel against an image.
|
class |
MedianFilter<T extends RealType<T>>
Median filter / morphological operation.
|
class |
MorphClose<T extends RealType<T>>
Close morphological operation.
|
class |
MorphDilate<T extends RealType<T>>
Dilation morphological operation.
|
class |
MorphErode<T extends RealType<T>>
Erosion morphological operation.
|
class |
MorphOpen<T extends RealType<T>>
Open morphological operation.
|
class |
StatisticalOperation<T extends RealType<T>>
StatisticalOperation provides the framework to create Order Statistic operations.
|
class |
StatisticalOperation.SimpleCollectionStrategy<R extends RealType<R>>
Simple, dumb statistics collection implementation.
|
static interface |
StatisticalOperation.StatisticsCollectionStrategy<R extends RealType<R>>
Implements a strategy for populating the sorted list associated with this
StatisticalOperation.
|
| Modifier and Type | Class and Description |
|---|---|
class |
AdaptiveNonMaximalSuppression<T extends RealType<T>>
TODO
|
class |
DifferenceOfGaussianReal<A extends RealType<A>,B extends RealType<B>>
TODO
|
class |
DifferenceOfGaussianReal<A extends RealType<A>,B extends RealType<B>>
TODO
|
class |
DifferenceOfGaussianReal1<A extends RealType<A>>
TODO
|
class |
ScaleSpace<A extends Type<A>,B extends RealType<B>>
TODO
|
class |
SubpixelLocalization<T extends RealType<T>>
TODO
|
| Modifier and Type | Method and Description |
|---|---|
static <T extends RealType<T>> |
SubpixelLocalization.computeDerivativeVector(LocalizableByDimCursor<T> cursor)
Computes the n-dimensional 1st derivative vector in 3x3x3...x3 environment for a certain
Image location
defined by the position of the LocalizableByDimCursor. |
static <T extends RealType<T>> |
SubpixelLocalization.computeDerivativeVector(LocalizableByDimCursor<T> cursor,
Image<DoubleType> derivativeVector)
Computes the n-dimensional 1st derivative vector in 3x3x3...x3 environment for a certain
Image location
defined by the position of the LocalizableByDimCursor. |
static <T extends RealType<T>> |
SubpixelLocalization.computeHessianMatrix(LocalizableByDimCursor<T> cursor)
Computes the n-dimensional Hessian Matrix in 3x3x3...x3 environment for a certain
Image location
defined by the position of the LocalizableByDimCursor. |
static <T extends RealType<T>> |
SubpixelLocalization.computeHessianMatrix(LocalizableByDimCursor<T> cursor,
Image<DoubleType> hessianMatrix)
Computes the n-dimensional Hessian Matrix in 3x3x3...x3 environment for a certain
Image location
defined by the position of the LocalizableByDimCursor. |
protected static <T extends RealType<T>> |
DifferenceOfGaussianReal.createVariable(ImageFactory<T> img,
double value) |
static <S extends RealType<S>> |
SubpixelLocalization.getMatrix(Image<S> maxtrixImage)
Converts an
Image into a matrix |
| Modifier and Type | Class and Description |
|---|---|
class |
HoughLineTransform<S extends RealType<S>,T extends Type<T> & Comparable<T>>
A class that extends
HoughTransform to handle Hough Line voting over an edge map. |
class |
HoughTransform<S extends RealType<S>,T extends Type<T> & Comparable<T>>
This abstract class provides some basic functionality for use with arbitrary Hough-like
transforms.
|
| Modifier and Type | Class and Description |
|---|---|
class |
DiscCursor<T extends RealType<T>>
TODO
|
| Modifier and Type | Class and Description |
|---|---|
class |
RealTypeConverter<A extends RealType<A>,B extends RealType<B>>
TODO
|
class |
RealTypeConverter<A extends RealType<A>,B extends RealType<B>>
TODO
|
| Modifier and Type | Method and Description |
|---|---|
static <T extends RealType<T>> |
ImagePlusAdapter.wrap(ij.ImagePlus imp) |
| Modifier and Type | Class and Description |
|---|---|
class |
RealTypeDisplay<T extends RealType<T>>
TODO
|
| Modifier and Type | Method and Description |
|---|---|
static <T extends RealType<T>> |
ImageJFunctions.wrap(ij.ImagePlus imp) |
| Modifier and Type | Class and Description |
|---|---|
class |
DCTInterpolator<T extends RealType<T>>
TODO
|
class |
DCTInterpolatorFactory<T extends RealType<T>>
TODO
|
| Modifier and Type | Class and Description |
|---|---|
class |
LanczosInterpolator<T extends RealType<T>>
TODO
|
class |
LanczosInterpolatorFactory<T extends RealType<T>>
TODO
|
| Modifier and Type | Class and Description |
|---|---|
class |
LinearInterpolator2DRealType<T extends RealType<T>>
TODO
|
class |
LinearInterpolator3DRealType<T extends RealType<T>>
TODO
|
class |
LinearInterpolatorFactory<T extends RealType<T>>
TODO
|
| Modifier and Type | Method and Description |
|---|---|
static <T extends RealType<T>> |
ImageOpener.makeType(int pixelType)
Converts Bio-Formats pixel type to imglib Type object.
|
static <T extends RealType<T>> |
LOCI.open(String fileName) |
<T extends RealType<T>> |
ImageOpener.openImage(IFormatReader r,
ImageFactory<T> imageFactory)
|
<T extends RealType<T>> |
ImageOpener.openImage(String id)
Reads in an imglib
Image from the given source
(e.g., file on disk). |
<T extends RealType<T>> |
ImageOpener.openImage(String id,
ContainerFactory containerFactory)
Reads in an imglib
Image from the given source
(e.g., file on disk), using the given ContainerFactory
to construct the Image. |
<T extends RealType<T>> |
ImageOpener.openImage(String id,
ImageFactory<T> imageFactory)
Reads in an imglib
Image from the given source
(e.g., file on disk), using the given ImageFactory
to construct the Image. |
static <T extends RealType<T>> |
LOCI.openLOCI(String fileName,
ContainerFactory containerFactory) |
static <T extends RealType<T>> |
LOCI.openLOCI(String path,
String fileName,
ContainerFactory containerFactory) |
static <T extends RealType<T>> |
LOCI.openLOCI(String path,
String fileName,
ContainerFactory containerFactory,
int from,
int to) |
| Modifier and Type | Class and Description |
|---|---|
class |
OutOfBoundsStrategyMirrorExpWindowing<T extends RealType<T>>
TODO
|
class |
OutOfBoundsStrategyMirrorExpWindowingFactory<T extends RealType<T>>
TODO
|
| Modifier and Type | Class and Description |
|---|---|
class |
BitType
TODO
|
| Modifier and Type | Interface and Description |
|---|---|
interface |
RealType<T extends RealType<T>>
TODO
|
| Modifier and Type | Interface and Description |
|---|---|
interface |
ExponentialMathType<T extends ExponentialMathType<T>>
TODO
|
interface |
IntegerType<T extends IntegerType<T>>
TODO
|
| Modifier and Type | Class and Description |
|---|---|
class |
ByteType
TODO
|
class |
GenericByteType<T extends GenericByteType<T>>
TODO
|
class |
GenericIntType<T extends GenericIntType<T>>
TODO
|
class |
GenericShortType<T extends GenericShortType<T>>
TODO
|
class |
IntegerTypeImpl<T extends IntegerTypeImpl<T>>
TODO
|
class |
IntType
TODO
|
class |
LongType
TODO
|
class |
ShortType
TODO
|
class |
Unsigned12BitType
TODO
|
class |
UnsignedByteType
TODO
|
class |
UnsignedIntType
TODO
|
class |
UnsignedShortType
TODO
|
| Modifier and Type | Class and Description |
|---|---|
class |
DoubleType
TODO
|
class |
FloatType
TODO
|
class |
RealTypeImpl<T extends RealTypeImpl<T>>
TODO
|
| Modifier and Type | Method and Description |
|---|---|
static <T extends RealType<T>> |
DetectionSegmentation.extractBeadsLaPlaceImgLib(Image<T> img,
float initialSigma,
float minPeakValue,
float minInitialPeakValue) |
static <T extends RealType<T>> |
DetectionSegmentation.extractBeadsLaPlaceImgLib(Image<T> img,
OutOfBoundsStrategyFactory<T> oobsFactory,
float imageSigma,
float sigma1,
float sigma2,
float minPeakValue,
float minInitialPeakValue,
boolean findMax,
boolean findMin,
int debugLevel) |
static <T extends RealType<T>> |
DetectionSegmentation.extractBeadsLaPlaceImgLib(Image<T> img,
OutOfBoundsStrategyFactory<T> oobsFactory,
float imageSigma,
float initialSigma,
float minPeakValue,
float minInitialPeakValue,
int stepsPerOctave,
boolean findMax,
boolean findMin,
int debugLevel) |
| Modifier and Type | Method and Description |
|---|---|
protected static <T extends RealType<T>,S extends RealType<S>> |
PairWiseStitchingImgLib.averageAllChannels(Image<T> target,
ArrayList<Image<S>> sources,
int[] offset)
Averages all channels into the target image.
|
protected static <T extends RealType<T>,S extends RealType<S>> |
PairWiseStitchingImgLib.averageAllChannels(Image<T> target,
ArrayList<Image<S>> sources,
int[] offset)
Averages all channels into the target image.
|
static <T extends RealType<T>> |
PairWiseStitchingImgLib.averageAllChannels(Image<T> target,
int[] offset,
ij.ImagePlus imp,
int timepoint)
Averages all channels into the target image.
|
static <T extends RealType<T>,S extends RealType<S>> |
PairWiseStitchingImgLib.computePhaseCorrelation(Image<T> img1,
Image<S> img2,
int numPeaks,
boolean subpixelAccuracy) |
static <T extends RealType<T>,S extends RealType<S>> |
PairWiseStitchingImgLib.computePhaseCorrelation(Image<T> img1,
Image<S> img2,
int numPeaks,
boolean subpixelAccuracy) |
static <T extends RealType<T>> |
PairWiseStitchingImgLib.fillInChannel(Image<T> target,
int[] offset,
ij.ImagePlus imp,
int channel,
int timepoint)
Averages all channels into the target image.
|
static <T extends RealType<T>> |
PairWiseStitchingImgLib.getImage(ij.ImagePlus imp,
Roi roi,
ImageFactory<T> imgFactory,
int channel,
int timepoint)
return an
Image<T> as input for the PhaseCorrelation. |
static <T extends RealType<T>,S extends RealType<S>> |
PairWiseStitchingImgLib.performStitching(Image<T> img1,
Image<S> img2,
StitchingParameters params) |
static <T extends RealType<T>,S extends RealType<S>> |
PairWiseStitchingImgLib.performStitching(Image<T> img1,
Image<S> img2,
StitchingParameters params) |
| Modifier and Type | Method and Description |
|---|---|
static <T extends RealType<T>> |
OverlayFusion.createOverlay(T targetType,
ArrayList<ij.ImagePlus> images,
ArrayList<InvertibleBoundable> models,
int dimensionality,
int timepoint,
InterpolatorFactory<FloatType> factory) |
protected static <T extends RealType<T>> |
OverlayFusion.createOverlay(T targetType,
ij.ImagePlus imp1,
ij.ImagePlus imp2,
InvertibleBoundable finalModel1,
InvertibleBoundable finalModel2,
int dimensionality,
int interpolation) |
static <T extends RealType<T>> |
OverlayFusion.createReRegisteredSeries(T targetType,
ij.ImagePlus imp,
ArrayList<InvertibleBoundable> models,
int dimensionality,
String directory,
int interpolation) |
static <T extends RealType<T>> |
OverlayFusion.fuseChannel(Image<T> output,
Image<FloatType> input,
float[] offset,
InvertibleCoordinateTransform transform,
InterpolatorFactory<FloatType> factory)
Fuse one slice/volume (one channel)
|
| Modifier and Type | Method and Description |
|---|---|
static <T extends RealType<T>> |
ImgLib.open(String pathOrURL)
Open an image from a file path or a web URL.
|
static <T extends RealType<T>> |
ImgLib.save(Image<T> image,
String path)
Save an image in the appropriate file format according to
the filename extension specified in .
|
static <T extends RealType<T>> |
ImgLib.save(Image<T> image,
String fileType,
String path)
Save an image in the format specified by , which can be any of:
"tif", "tiff", "zip", "gif", "jpg", "jpeg", "bmp", "pgm", "png", "raw".
|
static <T extends RealType<T>> |
ImgLib.wrap(ij.ImagePlus imp)
Wrap an ImageJ's
ImagePlus as an Imglib Image of the appropriate type. |
| Modifier and Type | Class and Description |
|---|---|
class |
BandpassFilter<T extends RealType<T>>
TODO
|
class |
Close<T extends RealType<T>>
TODO
|
class |
Dilate<T extends RealType<T>>
TODO
|
class |
Dither<T extends RealType<T>>
TODO
|
class |
Downsample<T extends RealType<T>>
TODO
|
class |
Erode<T extends RealType<T>>
TODO
|
class |
FFT<T extends RealType<T>>
TODO
|
class |
Gauss<T extends RealType<T>>
TODO
|
class |
HoughLineTransform<T extends RealType<T>>
TODO
|
class |
InverseFFT<T extends RealType<T>>
TODO
|
class |
MedianFilter<T extends RealType<T>>
TODO
|
class |
NormalizeSum<T extends RealType<T>>
TODO
|
class |
Open<T extends RealType<T>>
TODO
|
| Modifier and Type | Method and Description |
|---|---|
Image<? extends RealType<?>> |
Process.getResult() |
| Constructor and Description |
|---|
Process(Class<Algorithm> algorithmClass,
Image<? extends RealType<?>> img,
Object... parameters)
Initialize and execute the given
Algorithm and prepare a cursor
to deliver its pixel values one by one in successive calls to eval(). |
Process(OutputAlgorithm<? extends RealType<?>> algorithm)
Execute the given
OutputAlgorithm and prepare a cursor to deliver
its pixel values one by one in successive calls to eval(). |
| Modifier and Type | Class and Description |
|---|---|
class |
Morph<T extends RealType<T>>
Morphological operations such as Open, Close, Erode and Dilate.
|
| Modifier and Type | Class and Description |
|---|---|
class |
DoGPeaks<N extends RealType<N>>
|
class |
Histogram<T extends RealType<T>>
An histogram of the image (or an image computed from an IFunction)
between its minimum and maximum values,
with as many bins as desired (defaults to 256 bins).
|
class |
PickPeaks<T extends RealType<T>>
TODO
|
| Constructor and Description |
|---|
HSB(Image<? extends RealType<?>> img)
Interpret the @param img as an HSB image.
|
RGBA(Image<? extends RealType<?>> img)
Interpret the @param img as an ARGB image.
|
| Constructor and Description |
|---|
Channel(Image<? extends RealType<?>> img,
int channel)
In RGBALegacyType, A=4, R=3, G=2, B=1, or H=3, S=2, B=1
|
| Modifier and Type | Method and Description |
|---|---|
static <R extends RealType<R>> |
Compute.apply(IFunction op,
R output,
int numThreads)
|
| Modifier and Type | Method and Description |
|---|---|
static Image<DoubleType> |
Compute.inDoubles(Image<? extends RealType<?>> img)
Convenience method to avoid confusion with script wrappers that are themselves
Image
rather than IFunction; this method ends up creating a copy of the image, in DoubleType. |
static Image<FloatType> |
Compute.inFloats(Image<? extends RealType<?>> img)
|
static Image<RGBALegacyType> |
Compute.inRGBA(Image<? extends RealType<?>> img)
Convenience method to avoid confusion with script wrappers that are themselves
Image
rather than IFunction; this method ends up creating a copy of the image, in RGBALegacyType. |
| Constructor and Description |
|---|
Abs(Image<? extends RealType<?>> img) |
ACos(Image<? extends RealType<?>> img) |
Add(IFunction fn,
Image<? extends RealType<?>> right) |
Add(Image<? extends RealType<?>> left,
IFunction fn) |
Add(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Add(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Add(Image<? extends RealType<?>> left,
Number val) |
Add(Number val,
Image<? extends RealType<?>> right) |
And(IFunction fn,
Image<? extends RealType<?>> right) |
And(Image<? extends RealType<?>> left,
IFunction fn) |
And(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
And(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
And(Image<? extends RealType<?>> left,
Number val) |
And(Number val,
Image<? extends RealType<?>> right) |
ASin(Image<? extends RealType<?>> img) |
ATan(Image<? extends RealType<?>> img) |
ATan2(IFunction fn,
Image<? extends RealType<?>> right) |
ATan2(Image<? extends RealType<?>> left,
IFunction fn) |
ATan2(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
ATan2(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
ATan2(Image<? extends RealType<?>> left,
Number val) |
ATan2(Number val,
Image<? extends RealType<?>> right) |
Average(IFunction fn,
Image<? extends RealType<?>> right) |
Average(Image<? extends RealType<?>> left,
IFunction fn) |
Average(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Average(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Average(Image<? extends RealType<?>> left,
Number val) |
Average(Number val,
Image<? extends RealType<?>> right) |
Cbrt(Image<? extends RealType<?>> img) |
Ceil(Image<? extends RealType<?>> img) |
Cos(Image<? extends RealType<?>> img) |
Cosh(Image<? extends RealType<?>> img) |
Difference(IFunction fn,
Image<? extends RealType<?>> right) |
Difference(Image<? extends RealType<?>> left,
IFunction fn) |
Difference(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Difference(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Difference(Image<? extends RealType<?>> left,
Number val) |
Difference(Number val,
Image<? extends RealType<?>> right) |
Divide(IFunction fn,
Image<? extends RealType<?>> right) |
Divide(Image<? extends RealType<?>> right)
1 / img
|
Divide(Image<? extends RealType<?>> left,
IFunction fn) |
Divide(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Divide(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Divide(Image<? extends RealType<?>> left,
Number val) |
Divide(Number val,
Image<? extends RealType<?>> right) |
Exp(Image<? extends RealType<?>> img) |
Expm1(Image<? extends RealType<?>> img) |
Floor(Image<? extends RealType<?>> img) |
Hypot(IFunction fn,
Image<? extends RealType<?>> right) |
Hypot(Image<? extends RealType<?>> left,
IFunction fn) |
Hypot(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Hypot(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Hypot(Image<? extends RealType<?>> left,
Number val) |
Hypot(Number val,
Image<? extends RealType<?>> right) |
IEEEremainder(IFunction fn,
Image<? extends RealType<?>> right) |
IEEEremainder(Image<? extends RealType<?>> left,
IFunction fn) |
IEEEremainder(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
IEEEremainder(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
IEEEremainder(Image<? extends RealType<?>> left,
Number val) |
IEEEremainder(Number val,
Image<? extends RealType<?>> right) |
Log(Image<? extends RealType<?>> img) |
Log10(Image<? extends RealType<?>> img) |
Log1p(Image<? extends RealType<?>> img) |
Max(IFunction fn,
Image<? extends RealType<?>> right) |
Max(Image<? extends RealType<?>> left,
IFunction fn) |
Max(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Max(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Max(Image<? extends RealType<?>> left,
Number val) |
Max(Number val,
Image<? extends RealType<?>> right) |
Min(IFunction fn,
Image<? extends RealType<?>> right) |
Min(Image<? extends RealType<?>> left,
IFunction fn) |
Min(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Min(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Min(Image<? extends RealType<?>> left,
Number val) |
Min(Number val,
Image<? extends RealType<?>> right) |
Multiply(IFunction fn,
Image<? extends RealType<?>> right) |
Multiply(Image<? extends RealType<?>> left,
IFunction fn) |
Multiply(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Multiply(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Multiply(Image<? extends RealType<?>> left,
Number val) |
Multiply(Number val,
Image<? extends RealType<?>> right) |
Or(IFunction fn,
Image<? extends RealType<?>> right) |
Or(Image<? extends RealType<?>> left,
IFunction fn) |
Or(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Or(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Or(Image<? extends RealType<?>> left,
Number val) |
Or(Number val,
Image<? extends RealType<?>> right) |
Pow(IFunction fn,
Image<? extends RealType<?>> right) |
Pow(Image<? extends RealType<?>> left,
IFunction fn) |
Pow(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Pow(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Pow(Image<? extends RealType<?>> left,
Number val) |
Pow(Number val,
Image<? extends RealType<?>> right) |
Rint(Image<? extends RealType<?>> img) |
Round(Image<? extends RealType<?>> img) |
Signum(Image<? extends RealType<?>> img) |
Sin(Image<? extends RealType<?>> img) |
Sinh(Image<? extends RealType<?>> img) |
Sqrt(Image<? extends RealType<?>> img) |
Subtract(IFunction fn,
Image<? extends RealType<?>> right) |
Subtract(Image<? extends RealType<?>> left,
IFunction fn) |
Subtract(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Subtract(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Subtract(Image<? extends RealType<?>> left,
Number val) |
Subtract(Number val,
Image<? extends RealType<?>> right) |
Tan(Image<? extends RealType<?>> img) |
Tanh(Image<? extends RealType<?>> img) |
ToDegrees(Image<? extends RealType<?>> img) |
ToRadians(Image<? extends RealType<?>> img) |
Xor(IFunction fn,
Image<? extends RealType<?>> right) |
Xor(Image<? extends RealType<?>> left,
IFunction fn) |
Xor(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Xor(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
Xor(Image<? extends RealType<?>> left,
Number val) |
Xor(Number val,
Image<? extends RealType<?>> right) |
| Constructor and Description |
|---|
BinaryOperation(IFunction fn,
Image<? extends RealType<?>> right) |
BinaryOperation(Image<? extends RealType<?>> left,
IFunction fn) |
BinaryOperation(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
BinaryOperation(Image<? extends RealType<?>> left,
Image<? extends RealType<?>> right) |
BinaryOperation(Image<? extends RealType<?>> left,
Number val) |
BinaryOperation(Number val,
Image<? extends RealType<?>> right) |
ImageFunction(Image<? extends RealType<?>> img) |
UnaryOperation(Image<? extends RealType<?>> img) |
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