Hierarchy For All Packages

Package Hierarchies:

• fiji.plugin.trackmate,
• fiji.plugin.trackmate.action,
• fiji.plugin.trackmate.action.autonaming,
• fiji.plugin.trackmate.action.closegaps,
• fiji.plugin.trackmate.action.fit,
• fiji.plugin.trackmate.detection,
• fiji.plugin.trackmate.detection.semiauto,
• fiji.plugin.trackmate.detection.util,
• fiji.plugin.trackmate.features,
• fiji.plugin.trackmate.features.edges,
• fiji.plugin.trackmate.features.manual,
• fiji.plugin.trackmate.features.spot,
• fiji.plugin.trackmate.features.track,
• fiji.plugin.trackmate.graph,
• fiji.plugin.trackmate.gui,
• fiji.plugin.trackmate.gui.components,
• fiji.plugin.trackmate.gui.components.detector,
• fiji.plugin.trackmate.gui.components.tracker,
• fiji.plugin.trackmate.gui.displaysettings,
• fiji.plugin.trackmate.gui.wizard,
• fiji.plugin.trackmate.gui.wizard.descriptors,
• fiji.plugin.trackmate.io,
• fiji.plugin.trackmate.providers,
• fiji.plugin.trackmate.tracking,
• fiji.plugin.trackmate.tracking.jaqaman,
• fiji.plugin.trackmate.tracking.jaqaman.costfunction,
• fiji.plugin.trackmate.tracking.jaqaman.costmatrix,
• fiji.plugin.trackmate.tracking.kalman,
• fiji.plugin.trackmate.tracking.kdtree,
• fiji.plugin.trackmate.tracking.manual,
• fiji.plugin.trackmate.tracking.overlap,
• fiji.plugin.trackmate.util,
• fiji.plugin.trackmate.util.cli,
• fiji.plugin.trackmate.visualization,
• fiji.plugin.trackmate.visualization.hyperstack,
• fiji.plugin.trackmate.visualization.table,
• fiji.plugin.trackmate.visualization.trackscheme,
• fiji.plugin.trackmate.visualization.trackscheme.utils

Class Hierarchy

• java.lang.Object
  • javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
    • fiji.plugin.trackmate.visualization.trackscheme.SaveAction
    • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeActions.EditAction
  • fiji.plugin.trackmate.gui.wizard.AbstractAnimator
    • fiji.plugin.trackmate.gui.wizard.TransitionAnimator
  • org.jfree.chart.annotations.AbstractAnnotation (implements org.jfree.chart.annotations.Annotation, java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.annotations.AbstractXYAnnotation (implements org.jfree.chart.annotations.XYAnnotation)
      • fiji.plugin.trackmate.gui.components.XYTextSimpleAnnotation
  • org.scijava.AbstractContextual (implements org.scijava.Contextual)
    • org.scijava.plugin.AbstractRichPlugin (implements org.scijava.plugin.RichPlugin)
      • org.scijava.service.AbstractService (implements org.scijava.service.Service)
        • fiji.plugin.trackmate.TrackMateService (implements net.imagej.ImageJService)
  • org.jfree.data.general.AbstractDataset (implements java.lang.Cloneable, org.jfree.data.general.Dataset, java.io.ObjectInputValidation, java.io.Serializable)
    • org.jfree.data.general.AbstractSeriesDataset (implements java.io.Serializable, org.jfree.data.general.SeriesChangeListener, org.jfree.data.general.SeriesDataset)
      • org.jfree.data.xy.AbstractXYDataset (implements org.jfree.data.xy.XYDataset)
        • org.jfree.data.xy.AbstractIntervalXYDataset (implements org.jfree.data.xy.IntervalXYDataset)
          • org.jfree.data.statistics.HistogramDataset (implements java.lang.Cloneable, org.jfree.data.xy.IntervalXYDataset, org.jfree.chart.util.PublicCloneable, java.io.Serializable)
            • fiji.plugin.trackmate.gui.components.LogHistogramDataset
    • fiji.plugin.trackmate.features.ModelDataset (implements java.lang.Iterable<T>, org.jfree.data.xy.XYDataset)
      • fiji.plugin.trackmate.features.EdgeCollectionDataset
      • fiji.plugin.trackmate.features.SpotCollectionDataset (implements org.jfree.data.xy.XYDataset)
      • fiji.plugin.trackmate.features.TrackCollectionDataset
  • fiji.plugin.trackmate.features.edges.AbstractEdgeAnalyzer (implements fiji.plugin.trackmate.features.edges.EdgeAnalyzer)
    • fiji.plugin.trackmate.features.edges.DirectionalChangeAnalyzer
    • fiji.plugin.trackmate.features.edges.EdgeSpeedAnalyzer
    • fiji.plugin.trackmate.features.edges.EdgeTargetAnalyzer
    • fiji.plugin.trackmate.features.edges.EdgeTimeLocationAnalyzer
  • net.imglib2.AbstractEuclideanSpace (implements net.imglib2.EuclideanSpace)
    • fiji.plugin.trackmate.Spot (implements java.lang.Comparable<T>, net.imglib2.RealLocalizable)
  • fiji.plugin.trackmate.features.AbstractFeatureGrapher
    • fiji.plugin.trackmate.features.EdgeFeatureGrapher
    • fiji.plugin.trackmate.features.SpotFeatureGrapher
    • fiji.plugin.trackmate.features.TrackFeatureGrapher
  • org.jgrapht.traverse.AbstractGraphIterator<V,E> (implements org.jgrapht.traverse.GraphIterator<V,E>)
    • fiji.plugin.trackmate.graph.SortedDepthFirstIterator<V,E>
      • fiji.plugin.trackmate.graph.TimeDirectedDepthFirstIterator
      • fiji.plugin.trackmate.graph.TimeDirectedSortedDepthFirstIterator
  • fiji.plugin.trackmate.providers.AbstractProvider<K>
    • fiji.plugin.trackmate.providers.ActionProvider
    • fiji.plugin.trackmate.providers.DetectorProvider
    • fiji.plugin.trackmate.providers.EdgeAnalyzerProvider
    • fiji.plugin.trackmate.providers.SpotAnalyzerProvider
    • fiji.plugin.trackmate.providers.SpotMorphologyAnalyzerProvider
    • fiji.plugin.trackmate.providers.TrackAnalyzerProvider
    • fiji.plugin.trackmate.providers.TrackerProvider
    • fiji.plugin.trackmate.providers.ViewProvider
  • fiji.plugin.trackmate.detection.semiauto.AbstractSemiAutoTracker<T> (implements net.imglib2.algorithm.Algorithm, net.imglib2.algorithm.MultiThreaded)
    • fiji.plugin.trackmate.detection.semiauto.SemiAutoTracker<T>
  • fiji.plugin.trackmate.detection.semiauto.AbstractSemiAutoTracker.SearchRegion<R>
  • fiji.plugin.trackmate.features.spot.AbstractSpotFeatureAnalyzer<T> (implements net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.MultiThreaded, fiji.plugin.trackmate.features.spot.SpotAnalyzer<T>)
    • fiji.plugin.trackmate.features.spot.SpotContrastAndSNRAnalyzer<T>
    • fiji.plugin.trackmate.features.spot.SpotFitEllipseAnalyzer<T>
    • fiji.plugin.trackmate.features.spot.SpotIntensityMultiCAnalyzer<T>
    • fiji.plugin.trackmate.features.spot.SpotShapeAnalyzer<T>
  • fiji.plugin.trackmate.action.fit.AbstractSpotFitter (implements fiji.plugin.trackmate.action.fit.SpotFitter)
    • fiji.plugin.trackmate.action.fit.SpotGaussianFitter2D
    • fiji.plugin.trackmate.action.fit.SpotGaussianFitter2DFixedRadius
    • fiji.plugin.trackmate.action.fit.SpotGaussianFitter3D
    • fiji.plugin.trackmate.action.fit.SpotGaussianFitter3DFixedRadius
  • fiji.plugin.trackmate.action.fit.AbstractSpotFitter.Observation
  • fiji.plugin.trackmate.action.AbstractTMAction (implements fiji.plugin.trackmate.action.TrackMateAction)
    • fiji.plugin.trackmate.action.autonaming.AutoNamingAction
    • fiji.plugin.trackmate.action.CaptureOverlayAction
    • fiji.plugin.trackmate.action.closegaps.CloseGapsAction
    • fiji.plugin.trackmate.action.ComputeDistanceToRoiAction
    • fiji.plugin.trackmate.action.CTCExporterAction
    • fiji.plugin.trackmate.action.ExportAllSpotsStatsAction
    • fiji.plugin.trackmate.action.ExportStatsTablesAction
    • fiji.plugin.trackmate.action.ExportTracksToXML
    • fiji.plugin.trackmate.action.ExtractTrackStackAction
    • fiji.plugin.trackmate.action.IcyTrackExporter
    • fiji.plugin.trackmate.action.IJRoiExporter.IJRoiExporterAction
    • fiji.plugin.trackmate.action.ISBIChallengeExporter
    • fiji.plugin.trackmate.action.LabelImgExporter
    • fiji.plugin.trackmate.action.MergeFileAction
    • fiji.plugin.trackmate.action.MotilityLabExporter
    • fiji.plugin.trackmate.action.PlotNSpotsVsTimeAction
    • fiji.plugin.trackmate.action.RecomputeFeatureAction
    • fiji.plugin.trackmate.action.ResetSpotTimeFeatureAction
    • fiji.plugin.trackmate.action.fit.SpotGaussianFittingAction
    • fiji.plugin.trackmate.action.TrackBranchAnalysis
    • fiji.plugin.trackmate.action.TrimNotVisibleAction
  • fiji.tool.AbstractTool (implements ij.ImageListener, ij.plugin.PlugIn, java.awt.event.WindowFocusListener)
    • fiji.plugin.trackmate.visualization.hyperstack.SpotEditTool (implements java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, fiji.tool.ToolWithOptions)
  • fiji.plugin.trackmate.features.track.AbstractTrackAnalyzer (implements fiji.plugin.trackmate.features.track.TrackAnalyzer)
    • fiji.plugin.trackmate.features.track.TrackBranchingAnalyzer
    • fiji.plugin.trackmate.features.track.TrackDurationAnalyzer
    • fiji.plugin.trackmate.features.track.TrackLocationAnalyzer
    • fiji.plugin.trackmate.features.track.TrackSpeedStatisticsAnalyzer
    • fiji.plugin.trackmate.features.track.TrackSpotQualityFeatureAnalyzer
  • fiji.plugin.trackmate.visualization.AbstractTrackMateModelView (implements fiji.plugin.trackmate.ModelChangeListener, fiji.plugin.trackmate.SelectionChangeListener, fiji.plugin.trackmate.visualization.TrackMateModelView)
    • fiji.plugin.trackmate.visualization.hyperstack.HyperStackDisplayer
    • fiji.plugin.trackmate.visualization.trackscheme.TrackScheme
  • fiji.plugin.trackmate.tracking.kalman.AdvancedKalmanTracker (implements net.imglib2.algorithm.Benchmark, org.scijava.Cancelable, fiji.plugin.trackmate.tracking.SpotTracker)
  • fiji.plugin.trackmate.util.AlphanumComparator
  • fiji.plugin.trackmate.action.autonaming.AutoNamingAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.action.autonaming.AutoNamingController
  • fiji.plugin.trackmate.action.autonaming.AutoNamingPerformer
  • net.imglib2.algorithm.BenchmarkAlgorithm (implements net.imglib2.algorithm.Algorithm, net.imglib2.algorithm.Benchmark)
    • fiji.plugin.trackmate.tracking.jaqaman.JaqamanLinker<K,J> (implements net.imglib2.algorithm.OutputAlgorithm<F>)
    • fiji.plugin.trackmate.detection.util.MedianFilter2D<T> (implements net.imglib2.algorithm.OutputAlgorithm<F>)
  • fiji.plugin.trackmate.gui.displaysettings.BoundedValue
  • fiji.plugin.trackmate.gui.displaysettings.BoundedValueDouble
  • fiji.plugin.trackmate.visualization.table.BranchTableView.Branch (implements java.lang.Comparable<T>)
  • fiji.plugin.trackmate.action.CaptureOverlayAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.util.ChartExporter
  • fiji.plugin.trackmate.util.cli.CLIConfigurator
    • fiji.plugin.trackmate.util.cli.CommandCLIConfigurator
    • fiji.plugin.trackmate.util.cli.CondaCLIConfigurator
  • fiji.plugin.trackmate.util.cli.CLIConfigurator.Argument<T,O>
    • fiji.plugin.trackmate.util.cli.CLIConfigurator.AbstractStringArgument<T>
      • fiji.plugin.trackmate.util.cli.CLIConfigurator.ChoiceArgument
      • fiji.plugin.trackmate.util.cli.CLIConfigurator.PathArgument
      • fiji.plugin.trackmate.util.cli.CLIConfigurator.StringArgument
      • fiji.plugin.trackmate.util.cli.CommandCLIConfigurator.ExecutablePath
      • fiji.plugin.trackmate.util.cli.CondaCLIConfigurator.CondaEnvironmentCommand
    • fiji.plugin.trackmate.util.cli.CLIConfigurator.BoundedValueArgument<T,O>
      • fiji.plugin.trackmate.util.cli.CLIConfigurator.DoubleArgument
      • fiji.plugin.trackmate.util.cli.CLIConfigurator.IntArgument
    • fiji.plugin.trackmate.util.cli.CLIConfigurator.Flag
  • fiji.plugin.trackmate.util.cli.CLIConfigurator.ChoiceAdder
  • fiji.plugin.trackmate.util.cli.CLIConfigurator.DoubleAdder
  • fiji.plugin.trackmate.util.cli.CLIConfigurator.FlagAdder
  • fiji.plugin.trackmate.util.cli.CLIConfigurator.IntAdder
  • fiji.plugin.trackmate.util.cli.CLIConfigurator.PathAdder
  • fiji.plugin.trackmate.util.cli.CLIConfigurator.SelectableArguments
  • fiji.plugin.trackmate.util.cli.CLIConfigurator.StringAdder
  • fiji.plugin.trackmate.util.cli.CliGuiBuilder (implements fiji.plugin.trackmate.util.cli.CLIConfigurator.ArgumentVisitor)
  • fiji.plugin.trackmate.util.cli.CLIUtils
  • fiji.plugin.trackmate.action.closegaps.CloseGapsAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.action.closegaps.CloseGapsByDetection (implements fiji.plugin.trackmate.action.closegaps.GapClosingMethod)
  • fiji.plugin.trackmate.action.closegaps.CloseGapsByLinearInterpolation (implements fiji.plugin.trackmate.action.closegaps.GapClosingMethod)
  • fiji.plugin.trackmate.action.closegaps.CloseGapsController
  • fiji.plugin.trackmate.gui.displaysettings.ColorIcon (implements javax.swing.Icon)
  • fiji.plugin.trackmate.gui.displaysettings.Colormap (implements org.jfree.chart.renderer.PaintScale, java.io.Serializable)
  • fiji.plugin.trackmate.gui.displaysettings.ColormapIO
  • fiji.plugin.trackmate.util.cli.CommandBuilder (implements fiji.plugin.trackmate.util.cli.CLIConfigurator.ArgumentVisitor)
  • fiji.plugin.trackmate.util.cli.CommonTrackMateArguments
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.JComboBox<E> (implements javax.accessibility.Accessible, java.awt.event.ActionListener, java.awt.ItemSelectable, javax.swing.event.ListDataListener)
          • fiji.plugin.trackmate.gui.components.CategoryJComboBox<K,V>
        • javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • fiji.plugin.trackmate.util.JLabelLogger
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • fiji.plugin.trackmate.action.autonaming.AutoNamingPanel
          • fiji.plugin.trackmate.action.CaptureOverlayPanel
          • org.jfree.chart.ChartPanel (implements java.awt.event.ActionListener, org.jfree.chart.event.ChartChangeListener, org.jfree.chart.event.ChartProgressListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, org.jfree.chart.event.OverlayChangeListener, java.awt.print.Printable, java.io.Serializable)
            • fiji.plugin.trackmate.util.ExportableChartPanel
          • fiji.plugin.trackmate.util.cli.CliGuiBuilder.CliConfigPanel
          • fiji.plugin.trackmate.action.closegaps.CloseGapsPanel
          • fiji.plugin.trackmate.gui.components.ConfigurationPanel
            • fiji.plugin.trackmate.gui.components.tracker.AdvancedKalmanTrackerSettingsPanel
            • fiji.plugin.trackmate.gui.components.detector.HessianDetectorConfigurationPanel
            • fiji.plugin.trackmate.gui.components.tracker.KalmanTrackerConfigPanel
            • fiji.plugin.trackmate.gui.components.tracker.LAPTrackerSettingsPanel
            • fiji.plugin.trackmate.gui.components.detector.LogDetectorConfigurationPanel
              • fiji.plugin.trackmate.gui.components.detector.DogDetectorConfigurationPanel
            • fiji.plugin.trackmate.gui.components.detector.ManualDetectorConfigurationPanel
            • fiji.plugin.trackmate.gui.components.tracker.NearestNeighborTrackerSettingsPanel
            • fiji.plugin.trackmate.gui.components.tracker.OverlapTrackerSettingsPanel
            • fiji.plugin.trackmate.gui.components.tracker.SimpleLAPTrackerSettingsPanel
            • fiji.plugin.trackmate.gui.components.detector.ThresholdDetectorConfigurationPanel
              • fiji.plugin.trackmate.gui.components.detector.LabelImageDetectorConfigurationPanel
              • fiji.plugin.trackmate.gui.components.detector.MaskDetectorConfigurationPanel
          • fiji.plugin.trackmate.gui.components.ConfigureViewsPanel
          • fiji.plugin.trackmate.util.DetectionPreviewPanel
          • fiji.plugin.trackmate.gui.displaysettings.DisplaySettingsPanel
          • fiji.plugin.trackmate.gui.components.FeaturePlotSelectionPanel
          • fiji.plugin.trackmate.gui.components.FilterGuiPanel (implements javax.swing.event.ChangeListener)
          • fiji.plugin.trackmate.gui.components.FilterPanel
          • fiji.plugin.trackmate.gui.components.GrapherPanel
          • fiji.plugin.trackmate.visualization.trackscheme.InfoPane (implements fiji.plugin.trackmate.SelectionChangeListener)
          • fiji.plugin.trackmate.gui.components.InitFilterPanel
          • fiji.plugin.trackmate.gui.components.tracker.JPanelAdvancedKalmanTrackerSettingsMain
          • fiji.plugin.trackmate.gui.components.tracker.JPanelFeaturePenalty
          • fiji.plugin.trackmate.gui.components.tracker.JPanelFeatureSelectionGui
          • fiji.plugin.trackmate.gui.components.tracker.JPanelTrackerSettingsMain
          • fiji.plugin.trackmate.action.LabelImgExporterPanel
          • fiji.plugin.trackmate.gui.components.LogPanel
          • fiji.plugin.trackmate.gui.components.ModuleChooserPanel<K>
            • fiji.plugin.trackmate.gui.components.ActionChooserPanel
          • fiji.plugin.trackmate.util.QualityHistogramChart
          • fiji.plugin.trackmate.gui.displaysettings.SliderPanel (implements fiji.plugin.trackmate.gui.displaysettings.BoundedValue.UpdateListener)
          • fiji.plugin.trackmate.gui.displaysettings.SliderPanelDouble (implements fiji.plugin.trackmate.gui.displaysettings.BoundedValueDouble.UpdateListener)
          • fiji.plugin.trackmate.visualization.trackscheme.SmallFeaturePlotSelectionPanel
          • fiji.plugin.trackmate.action.fit.SpotFitterPanel
          • fiji.plugin.trackmate.gui.wizard.WizardPanel
        • javax.swing.JPopupMenu (implements javax.accessibility.Accessible, javax.swing.MenuElement)
          • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemePopupMenu
        • javax.swing.JScrollPane (implements javax.accessibility.Accessible, javax.swing.ScrollPaneConstants)
          • com.mxgraph.swing.mxGraphComponent (implements java.awt.print.Printable)
            • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeGraphComponent (implements com.mxgraph.util.mxEventSource.mxIEventListener)
        • javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • javax.swing.JTextField (implements javax.swing.SwingConstants)
            • fiji.plugin.trackmate.visualization.trackscheme.utils.SearchBar
        • javax.swing.JToolBar (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeToolbar
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • fiji.plugin.trackmate.visualization.table.AllSpotsTableView (implements fiji.plugin.trackmate.ModelChangeListener, fiji.plugin.trackmate.SelectionChangeListener, fiji.plugin.trackmate.visualization.TrackMateModelView)
            • fiji.plugin.trackmate.visualization.table.BranchTableView (implements fiji.plugin.trackmate.visualization.TrackMateModelView)
            • fiji.plugin.trackmate.util.ExportableChartValueTable
            • fiji.plugin.trackmate.visualization.hyperstack.SpotEditToolConfigPanel
            • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeFrame
            • fiji.plugin.trackmate.visualization.table.TrackTableView (implements fiji.plugin.trackmate.ModelChangeListener, fiji.plugin.trackmate.SelectionChangeListener, fiji.plugin.trackmate.visualization.TrackMateModelView)
  • fiji.plugin.trackmate.action.ComputeDistanceToRoiAction.DistanceToRoiFeature<T> (implements fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>)
  • fiji.plugin.trackmate.action.ComputeDistanceToRoiAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.util.cli.CondaPathConfigCommand (implements org.scijava.command.Command)
  • fiji.plugin.trackmate.gui.displaysettings.ConfigTrackMateDisplaySettings (implements org.scijava.command.Command)
  • fiji.plugin.trackmate.graph.ConvexBranchesDecomposition (implements net.imglib2.algorithm.Algorithm, net.imglib2.algorithm.Benchmark)
  • fiji.plugin.trackmate.graph.ConvexBranchesDecomposition.TrackBranchDecomposition
  • fiji.plugin.trackmate.features.spot.ConvexHull
  • fiji.plugin.trackmate.action.autonaming.CopyTrackNameNamingRule (implements fiji.plugin.trackmate.action.autonaming.AutoNamingRule)
  • fiji.plugin.trackmate.io.CSVExporter
  • fiji.plugin.trackmate.action.CTCExporter
  • fiji.plugin.trackmate.action.CTCExporterAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.tracking.kalman.CVMKalmanFilter
  • fiji.plugin.trackmate.action.autonaming.DefaultAutoNamingRule (implements fiji.plugin.trackmate.action.autonaming.AutoNamingRule)
  • fiji.plugin.trackmate.tracking.jaqaman.costmatrix.DefaultCostMatrixCreator<K,J> (implements fiji.plugin.trackmate.tracking.jaqaman.costmatrix.CostMatrixCreator<K,J>)
  • fiji.plugin.trackmate.tracking.jaqaman.costmatrix.DefaultCostMatrixCreator.Assignment (implements java.lang.Comparable<T>)
  • fiji.plugin.trackmate.util.DetectionPreview
  • fiji.plugin.trackmate.util.DetectionPreview.Builder
  • fiji.plugin.trackmate.detection.DetectionUtils
  • fiji.plugin.trackmate.detection.DetectorKeys
  • fiji.plugin.trackmate.gui.displaysettings.DisplaySettings
  • fiji.plugin.trackmate.gui.displaysettings.DisplaySettingsIO
  • java.util.EventObject (implements java.io.Serializable)
    • fiji.plugin.trackmate.ModelChangeEvent
    • fiji.plugin.trackmate.SelectionChangeEvent
  • fiji.plugin.trackmate.util.EverythingDisablerAndReenabler
  • fiji.plugin.trackmate.action.ExportAllSpotsStatsAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.action.ExportStatsTablesAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.action.ExportTracksToXML.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.action.ExtractTrackStackAction.ExtractTrackStackActionFactory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.gui.components.FeatureDisplaySelector
  • fiji.plugin.trackmate.features.FeatureFilter
  • fiji.plugin.trackmate.FeatureModel
  • fiji.plugin.trackmate.tracking.jaqaman.costfunction.FeaturePenaltyCostFunction (implements fiji.plugin.trackmate.tracking.jaqaman.costfunction.CostFunction<K,J>)
  • fiji.plugin.trackmate.features.FeatureUtils
  • fiji.plugin.trackmate.util.FileChooser
  • javax.swing.filechooser.FileFilter
    • fiji.plugin.trackmate.util.DefaultFileFilter
    • fiji.plugin.trackmate.util.DefaultFileFilter.EditorFileFilter
    • fiji.plugin.trackmate.util.DefaultFileFilter.ImageFileFilter
  • fiji.plugin.trackmate.tracking.kdtree.FlagNode<K>
  • fiji.plugin.trackmate.gui.Fonts
  • fiji.plugin.trackmate.graph.FromContinuousBranches (implements net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.OutputAlgorithm<F>)
  • fiji.plugin.trackmate.action.closegaps.GapClosingMethod.GapClosingParameter
  • fiji.plugin.trackmate.visualization.GlasbeyLut
  • fiji.plugin.trackmate.tracking.jaqaman.costmatrix.GraphSegmentSplitter
  • fiji.plugin.trackmate.graph.GraphUtils
  • fiji.plugin.trackmate.gui.GuiUtils
  • fiji.plugin.trackmate.detection.HessianDetector<T> (implements net.imglib2.algorithm.MultiThreaded, fiji.plugin.trackmate.detection.SpotDetector<T>)
  • fiji.plugin.trackmate.visualization.hyperstack.HyperStackDisplayerFactory (implements fiji.plugin.trackmate.visualization.ViewFactory)
  • fiji.plugin.trackmate.gui.Icons
  • fiji.plugin.trackmate.action.IcyTrackExporter.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.io.IcyTrackFormatWriter (implements net.imglib2.algorithm.Algorithm, net.imglib2.algorithm.Benchmark)
  • fiji.plugin.trackmate.action.IJRoiExporter
  • fiji.plugin.trackmate.action.IJRoiExporter.IJRoiExporterActionFactory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.util.ImageHelper
  • fiji.plugin.trackmate.io.IOUtils
  • fiji.plugin.trackmate.action.ISBIChallengeExporter.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.tracking.jaqaman.costmatrix.JaqamanLinkingCostMatrixCreator<K,J> (implements fiji.plugin.trackmate.tracking.jaqaman.costmatrix.CostMatrixCreator<K,J>)
  • fiji.plugin.trackmate.tracking.jaqaman.costmatrix.JaqamanSegmentCostMatrixCreator (implements fiji.plugin.trackmate.tracking.jaqaman.costmatrix.CostMatrixCreator<K,J>, net.imglib2.algorithm.MultiThreaded)
  • fiji.plugin.trackmate.tracking.kalman.KalmanTracker (implements net.imglib2.algorithm.Benchmark, org.scijava.Cancelable, fiji.plugin.trackmate.tracking.SpotTracker)
  • fiji.plugin.trackmate.tracking.kalman.KalmanTrackerFactory (implements fiji.plugin.trackmate.tracking.SpotTrackerFactory)
  • fiji.plugin.trackmate.detection.LabelImageDetector<T> (implements fiji.plugin.trackmate.detection.SpotDetector<T>)
  • fiji.plugin.trackmate.detection.LabelImageDetectorFactory<T> (implements fiji.plugin.trackmate.detection.SpotDetectorFactory<T>)
  • fiji.plugin.trackmate.action.LabelImgExporter.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.action.LabelImgExporter.SpotAsDotWriter<T> (implements fiji.plugin.trackmate.action.LabelImgExporter.SpotWriter)
  • fiji.plugin.trackmate.action.LabelImgExporter.SpotRoiWriter<T> (implements fiji.plugin.trackmate.action.LabelImgExporter.SpotWriter)
  • fiji.plugin.trackmate.tracking.jaqaman.costmatrix.LAPJV (implements net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.OutputAlgorithm<F>)
  • fiji.plugin.trackmate.tracking.jaqaman.LAPUtils
  • fiji.plugin.trackmate.detection.LogDetector<T> (implements net.imglib2.algorithm.MultiThreaded, fiji.plugin.trackmate.detection.SpotDetector<T>)
    • fiji.plugin.trackmate.detection.DogDetector<T>
  • fiji.plugin.trackmate.detection.LogDetectorFactory<T> (implements fiji.plugin.trackmate.detection.SpotDetectorFactory<T>)
    • fiji.plugin.trackmate.detection.DogDetectorFactory<T>
    • fiji.plugin.trackmate.detection.HessianDetectorFactory<T>
  • fiji.plugin.trackmate.detection.ManualDetectorFactory<T> (implements fiji.plugin.trackmate.detection.SpotDetectorFactory<T>)
  • fiji.plugin.trackmate.features.manual.ManualEdgeColorAnalyzer (implements fiji.plugin.trackmate.features.edges.EdgeAnalyzer)
  • fiji.plugin.trackmate.visualization.ManualEdgeColorGenerator (implements fiji.plugin.trackmate.visualization.TrackColorGenerator)
  • fiji.plugin.trackmate.visualization.ManualEdgePerSpotColorGenerator (implements fiji.plugin.trackmate.visualization.TrackColorGenerator)
  • fiji.plugin.trackmate.features.manual.ManualSpotColorAnalyzerFactory<T> (implements fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>)
  • fiji.plugin.trackmate.visualization.ManualSpotColorGenerator (implements fiji.plugin.trackmate.visualization.FeatureColorGenerator<K>)
  • fiji.plugin.trackmate.visualization.ManualSpotPerEdgeColorGenerator (implements fiji.plugin.trackmate.visualization.FeatureColorGenerator<K>)
  • fiji.plugin.trackmate.tracking.manual.ManualTrackerFactory (implements fiji.plugin.trackmate.tracking.SpotTrackerFactory)
  • fiji.plugin.trackmate.detection.MaskUtils
  • fiji.plugin.trackmate.action.MergeFileAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.Model
  • fiji.plugin.trackmate.features.ModelDataset.DataItem
  • fiji.plugin.trackmate.visualization.hyperstack.ModelEditActions
  • fiji.plugin.trackmate.features.ModelFeatureUpdater (implements fiji.plugin.trackmate.ModelChangeListener, net.imglib2.algorithm.MultiThreaded)
  • fiji.plugin.trackmate.util.ModelTools
  • fiji.plugin.trackmate.action.MotilityLabExporter.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • net.imglib2.algorithm.MultiThreadedAlgorithm (implements net.imglib2.algorithm.Algorithm, net.imglib2.algorithm.MultiThreaded)
    • net.imglib2.algorithm.MultiThreadedBenchmarkAlgorithm (implements net.imglib2.algorithm.Benchmark)
      • fiji.plugin.trackmate.features.EdgeFeatureCalculator (implements org.scijava.Cancelable)
      • fiji.plugin.trackmate.tracking.kdtree.NearestNeighborTracker (implements org.scijava.Cancelable, fiji.plugin.trackmate.tracking.SpotTracker)
      • fiji.plugin.trackmate.tracking.overlap.OverlapTracker (implements org.scijava.Cancelable, fiji.plugin.trackmate.tracking.SpotTracker)
      • fiji.plugin.trackmate.tracking.jaqaman.SparseLAPFrameToFrameTracker (implements org.scijava.Cancelable, fiji.plugin.trackmate.tracking.SpotTracker)
      • fiji.plugin.trackmate.tracking.jaqaman.SparseLAPTracker (implements org.scijava.Cancelable, fiji.plugin.trackmate.tracking.SpotTracker)
      • fiji.plugin.trackmate.features.SpotFeatureCalculator (implements org.scijava.Cancelable)
      • fiji.plugin.trackmate.features.TrackFeatureCalculator (implements org.scijava.Cancelable)
  • com.mxgraph.canvas.mxBasicCanvas (implements com.mxgraph.canvas.mxICanvas)
    • com.mxgraph.canvas.mxSvgCanvas
      • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeSvgCanvas
  • com.mxgraph.shape.mxBasicShape (implements com.mxgraph.shape.mxIShape)
    • com.mxgraph.shape.mxRectangleShape
      • fiji.plugin.trackmate.visualization.trackscheme.mxScaledLabelShape
  • com.mxgraph.util.mxEventSource
    • com.mxgraph.view.mxGraph
      • fiji.plugin.trackmate.visualization.trackscheme.JGraphXAdapter (implements org.jgrapht.event.GraphListener<V,E>)
  • com.mxgraph.layout.mxGraphLayout (implements com.mxgraph.layout.mxIGraphLayout)
    • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeGraphLayout (implements net.imglib2.algorithm.Benchmark)
  • fiji.plugin.trackmate.tracking.kdtree.NearestNeighborFlagSearchOnKDTree<T> (implements net.imglib2.neighborsearch.NearestNeighborSearch<T>)
  • fiji.plugin.trackmate.tracking.kdtree.NearestNeighborTrackerFactory (implements fiji.plugin.trackmate.tracking.SpotTrackerFactory)
  • org.jgrapht.alg.util.NeighborCache<V,E> (implements org.jgrapht.event.GraphListener<V,E>)
    • fiji.plugin.trackmate.graph.TimeDirectedNeighborIndex
  • fiji.plugin.trackmate.tracking.overlap.OverlapTrackerFactory (implements fiji.plugin.trackmate.tracking.SpotTrackerFactory)
  • fiji.plugin.trackmate.visualization.PerEdgeFeatureColorGenerator (implements fiji.plugin.trackmate.visualization.TrackColorGenerator)
  • fiji.plugin.trackmate.visualization.PerSpotFeatureColorGenerator (implements fiji.plugin.trackmate.visualization.TrackColorGenerator)
  • fiji.plugin.trackmate.visualization.PerTrackFeatureColorGenerator (implements fiji.plugin.trackmate.visualization.TrackColorGenerator)
  • fiji.plugin.trackmate.action.PlotNSpotsVsTimeAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.visualization.RandomSpotColorGenerator (implements fiji.plugin.trackmate.visualization.FeatureColorGenerator<K>)
  • fiji.plugin.trackmate.action.RecomputeFeatureAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.graph.RecursiveCumSum<V,E>
  • fiji.plugin.trackmate.action.ResetSpotTimeFeatureAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.tracking.jaqaman.costmatrix.ResizableDoubleArray
  • ij.gui.Roi (implements java.lang.Cloneable, java.lang.Iterable<T>, java.io.Serializable)
    • fiji.plugin.trackmate.visualization.hyperstack.SpotOverlay
    • fiji.plugin.trackmate.visualization.hyperstack.TrackOverlay
  • fiji.plugin.trackmate.tracking.jaqaman.SegmentTracker (implements net.imglib2.algorithm.Benchmark, fiji.plugin.trackmate.tracking.SpotTracker)
  • fiji.plugin.trackmate.tracking.jaqaman.SegmentTrackerFactory (implements fiji.plugin.trackmate.tracking.SpotTrackerFactory)
    • fiji.plugin.trackmate.tracking.kalman.AdvancedKalmanTrackerFactory
    • fiji.plugin.trackmate.tracking.jaqaman.SparseLAPTrackerFactory
      • fiji.plugin.trackmate.tracking.jaqaman.SimpleSparseLAPTrackerFactory
  • fiji.plugin.trackmate.SelectionModel
  • fiji.plugin.trackmate.Settings
  • fiji.plugin.trackmate.io.SettingsPersistence
  • fiji.plugin.trackmate.tracking.jaqaman.costmatrix.SparseCostMatrix
  • fiji.plugin.trackmate.features.spot.SpotAnalyzer.DummySpotAnalyzer<T> (implements fiji.plugin.trackmate.features.spot.SpotAnalyzer<T>)
  • fiji.plugin.trackmate.SpotCollection (implements net.imglib2.algorithm.MultiThreaded)
  • fiji.plugin.trackmate.visualization.SpotColorGenerator (implements fiji.plugin.trackmate.visualization.FeatureColorGenerator<K>)
  • fiji.plugin.trackmate.visualization.SpotColorGeneratorPerEdgeFeature (implements fiji.plugin.trackmate.visualization.FeatureColorGenerator<K>)
  • fiji.plugin.trackmate.visualization.SpotColorGeneratorPerTrackFeature (implements fiji.plugin.trackmate.visualization.FeatureColorGenerator<K>)
  • fiji.plugin.trackmate.features.spot.SpotContrastAndSNRAnalyzerFactory<T> (implements fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>)
  • fiji.plugin.trackmate.features.spot.SpotFitEllipseAnalyzerFactory<T> (implements fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>)
  • fiji.plugin.trackmate.action.fit.SpotFitterController
  • fiji.plugin.trackmate.action.fit.SpotGaussianFittingAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.visualization.trackscheme.SpotIconGrabber<T>
  • fiji.plugin.trackmate.visualization.trackscheme.SpotImageUpdater
  • fiji.plugin.trackmate.features.spot.SpotIntensityMultiCAnalyzerFactory<T> (implements fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>)
  • fiji.plugin.trackmate.util.SpotNeighborhood<T> (implements net.imglib2.algorithm.neighborhood.Neighborhood<T>)
  • fiji.plugin.trackmate.util.SpotNeighborhoodCursor<T> (implements net.imglib2.Cursor<T>)
  • fiji.plugin.trackmate.SpotRoi
  • fiji.plugin.trackmate.features.spot.SpotShapeAnalyzerFactory<T> (implements fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>)
  • fiji.plugin.trackmate.util.SpotUtil
  • fiji.plugin.trackmate.tracking.jaqaman.costfunction.SquareDistCostFunction (implements fiji.plugin.trackmate.tracking.jaqaman.costfunction.CostFunction<K,J>)
  • fiji.plugin.trackmate.detection.util.SquareNeighborhood3x3<T> (implements net.imglib2.IterableInterval<T>, net.imglib2.Positionable)
  • fiji.plugin.trackmate.detection.util.SquareNeighborhoodCursor3x3<T> (implements net.imglib2.outofbounds.Bounded, net.imglib2.Cursor<T>)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.BooleanElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.BoundedDoubleElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.ColorElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.ColormapElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.DoubleElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.EnumElement<E> (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.FeatureElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.FontElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.IntElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.LabelElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.ListElement<E> (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.Separator (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.StringElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.visualization.table.TablePanel<O>
  • org.apache.commons.io.input.TailerListenerAdapter (implements org.apache.commons.io.input.TailerListener)
    • fiji.plugin.trackmate.util.cli.CLIUtils.LoggerTailerListener
  • fiji.plugin.trackmate.io.TGMMImporter (implements net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.OutputAlgorithm<F>)
  • java.lang.Thread (implements java.lang.Runnable)
    • fiji.plugin.trackmate.util.OnRequestUpdater
    • fiji.plugin.trackmate.util.PainterThread
  • fiji.plugin.trackmate.util.Threads
  • fiji.plugin.trackmate.detection.ThresholdDetector<T> (implements net.imglib2.algorithm.MultiThreaded, fiji.plugin.trackmate.detection.SpotDetector<T>)
  • fiji.plugin.trackmate.detection.ThresholdDetectorFactory<T> (implements fiji.plugin.trackmate.detection.SpotDetectorFactory<T>)
    • fiji.plugin.trackmate.detection.MaskDetectorFactory<T>
  • fiji.plugin.trackmate.util.TMUtils
  • fiji.plugin.trackmate.io.TmXmlKeys
  • fiji.plugin.trackmate.io.TmXmlReader
  • fiji.plugin.trackmate.io.TmXmlWriter
  • fiji.plugin.trackmate.action.TrackBranchAnalysis.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.tracking.TrackerKeys
  • fiji.plugin.trackmate.features.track.TrackIndexAnalyzer (implements fiji.plugin.trackmate.features.track.TrackAnalyzer)
  • fiji.plugin.trackmate.TrackMate (implements net.imglib2.algorithm.Algorithm, net.imglib2.algorithm.Benchmark, org.scijava.Cancelable, net.imglib2.algorithm.MultiThreaded, org.scijava.Named)
  • fiji.plugin.trackmate.TrackMatePlugIn (implements ij.plugin.PlugIn)
    • fiji.plugin.trackmate.LoadTrackMatePlugIn
    • fiji.plugin.trackmate.ManualTrackingPlugIn
    • fiji.plugin.trackmate.TrackMateRunner
  • fiji.plugin.trackmate.util.cli.TrackMateSettingsBuilder
  • fiji.plugin.trackmate.gui.wizard.TrackMateWizardSequence (implements fiji.plugin.trackmate.gui.wizard.WizardSequence)
  • fiji.plugin.trackmate.TrackModel
  • fiji.plugin.trackmate.features.track.TrackMotilityAnalyzer (implements fiji.plugin.trackmate.features.track.TrackAnalyzer)
  • fiji.plugin.trackmate.util.TrackNavigator
  • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeActions
  • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeFactory (implements fiji.plugin.trackmate.visualization.ViewFactory)
  • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeKeyboardHandler
  • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeStylist
  • fiji.plugin.trackmate.action.TrimNotVisibleAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.visualization.UniformSpotColorGenerator (implements fiji.plugin.trackmate.visualization.FeatureColorGenerator<K>)
  • fiji.plugin.trackmate.visualization.UniformTrackColorGenerator (implements fiji.plugin.trackmate.visualization.TrackColorGenerator)
  • fiji.plugin.trackmate.visualization.ViewUtils
  • fiji.plugin.trackmate.visualization.WholeTrackFeatureColorGenerator (implements fiji.plugin.trackmate.visualization.FeatureColorGenerator<K>)
  • fiji.plugin.trackmate.gui.wizard.WizardController
  • fiji.plugin.trackmate.gui.wizard.WizardPanelDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.ActionChooserDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.ChooseDetectorDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.ChooseTrackerDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.ConfigureViewsDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.ExecuteDetectionDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.ExecuteTrackingDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.GrapherDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.InitFilterDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.LogPanelDescriptor2
    • fiji.plugin.trackmate.gui.wizard.descriptors.SaveDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.SpotDetectorDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.SpotFilterDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.SpotTrackerDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.StartDialogDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.TrackFilterDescriptor
  • java.io.Writer (implements java.lang.Appendable, java.io.Closeable, java.io.Flushable)
    • java.io.PrintWriter
      • fiji.plugin.trackmate.Logger
        • fiji.plugin.trackmate.Logger.SlaveLogger
        • fiji.plugin.trackmate.Logger.StringBuilderLogger
        • fiji.plugin.trackmate.util.LogRecorder

Interface Hierarchy

• net.imglib2.algorithm.Algorithm
  • fiji.plugin.trackmate.tracking.jaqaman.costmatrix.CostMatrixCreator<K,J> (also extends net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.OutputAlgorithm<F>)
  • net.imglib2.algorithm.OutputAlgorithm<F>
    • fiji.plugin.trackmate.tracking.jaqaman.costmatrix.CostMatrixCreator<K,J> (also extends net.imglib2.algorithm.Benchmark)
    • fiji.plugin.trackmate.detection.SpotDetector<T> (also extends net.imglib2.algorithm.Benchmark)
    • fiji.plugin.trackmate.detection.SpotGlobalDetector<T> (also extends net.imglib2.algorithm.Benchmark)
    • fiji.plugin.trackmate.tracking.SpotTracker (also extends net.imglib2.algorithm.MultiThreaded)
  • fiji.plugin.trackmate.detection.SpotDetector<T> (also extends net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.OutputAlgorithm<F>)
  • fiji.plugin.trackmate.detection.SpotGlobalDetector<T> (also extends net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.OutputAlgorithm<F>)
  • fiji.plugin.trackmate.tracking.SpotTracker (also extends net.imglib2.algorithm.MultiThreaded, net.imglib2.algorithm.OutputAlgorithm<F>)
• fiji.plugin.trackmate.action.autonaming.AutoNamingRule
• net.imglib2.algorithm.Benchmark
  • fiji.plugin.trackmate.tracking.jaqaman.costmatrix.CostMatrixCreator<K,J> (also extends net.imglib2.algorithm.OutputAlgorithm<F>)
  • fiji.plugin.trackmate.features.edges.EdgeAnalyzer (also extends fiji.plugin.trackmate.features.FeatureAnalyzer, net.imglib2.algorithm.MultiThreaded)
  • fiji.plugin.trackmate.detection.SpotDetector<T> (also extends net.imglib2.algorithm.OutputAlgorithm<F>)
  • fiji.plugin.trackmate.action.fit.SpotFitter (also extends net.imglib2.algorithm.MultiThreaded)
  • fiji.plugin.trackmate.detection.SpotGlobalDetector<T> (also extends net.imglib2.algorithm.OutputAlgorithm<F>)
  • fiji.plugin.trackmate.features.track.TrackAnalyzer (also extends fiji.plugin.trackmate.features.FeatureAnalyzer, net.imglib2.algorithm.MultiThreaded)
• fiji.plugin.trackmate.gui.displaysettings.BoundedValue.UpdateListener
• fiji.plugin.trackmate.gui.displaysettings.BoundedValueDouble.UpdateListener
• fiji.plugin.trackmate.util.cli.CLIConfigurator.ArgumentVisitor
• fiji.plugin.trackmate.tracking.jaqaman.costfunction.CostFunction<K,J>
• fiji.plugin.trackmate.gui.displaysettings.DisplaySettings.UpdateListener
• java.util.EventListener
  • fiji.plugin.trackmate.ModelChangeListener
  • fiji.plugin.trackmate.SelectionChangeListener
• fiji.plugin.trackmate.gui.components.FeaturePlotSelectionPanel.PlotAction
• java.util.function.Function<T,R>
  • fiji.plugin.trackmate.visualization.FeatureColorGenerator<K>
    • fiji.plugin.trackmate.visualization.TrackColorGenerator
  • fiji.plugin.trackmate.visualization.TrackColorGenerator
• fiji.plugin.trackmate.graph.Function1<T1,T2>
• fiji.plugin.trackmate.graph.Function2<T1,T2>
• fiji.plugin.trackmate.action.closegaps.GapClosingMethod
• fiji.plugin.trackmate.action.LabelImgExporter.SpotWriter
• net.imglib2.algorithm.MultiThreaded
  • fiji.plugin.trackmate.features.edges.EdgeAnalyzer (also extends net.imglib2.algorithm.Benchmark, fiji.plugin.trackmate.features.FeatureAnalyzer)
  • fiji.plugin.trackmate.action.fit.SpotFitter (also extends net.imglib2.algorithm.Benchmark)
  • fiji.plugin.trackmate.tracking.SpotTracker (also extends net.imglib2.algorithm.OutputAlgorithm<F>)
  • fiji.plugin.trackmate.features.track.TrackAnalyzer (also extends net.imglib2.algorithm.Benchmark, fiji.plugin.trackmate.features.FeatureAnalyzer)
• fiji.plugin.trackmate.util.OnRequestUpdater.Refreshable
• fiji.plugin.trackmate.graph.OutputFunction<E>
• fiji.plugin.trackmate.util.PainterThread.Paintable
• org.scijava.plugin.SciJavaPlugin
  • fiji.plugin.trackmate.features.edges.EdgeAnalyzer (also extends net.imglib2.algorithm.Benchmark, fiji.plugin.trackmate.features.FeatureAnalyzer, net.imglib2.algorithm.MultiThreaded)
  • fiji.plugin.trackmate.features.FeatureAnalyzer
    • fiji.plugin.trackmate.features.edges.EdgeAnalyzer (also extends net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.MultiThreaded)
    • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>
    • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactoryBase<T>
      • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>
      • fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>
    • fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>
    • fiji.plugin.trackmate.features.track.TrackAnalyzer (also extends net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.MultiThreaded)
  • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>
  • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactoryBase<T>
    • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>
    • fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>
  • fiji.plugin.trackmate.detection.SpotDetectorFactory<T>
  • fiji.plugin.trackmate.detection.SpotDetectorFactoryBase<T>
    • fiji.plugin.trackmate.detection.SpotDetectorFactory<T>
    • fiji.plugin.trackmate.detection.SpotGlobalDetectorFactory<T>
  • fiji.plugin.trackmate.detection.SpotGlobalDetectorFactory<T>
  • fiji.plugin.trackmate.tracking.SpotImageTrackerFactory
  • fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>
  • fiji.plugin.trackmate.tracking.SpotTrackerFactory
    • fiji.plugin.trackmate.tracking.SpotImageTrackerFactory
  • fiji.plugin.trackmate.features.track.TrackAnalyzer (also extends net.imglib2.algorithm.Benchmark, fiji.plugin.trackmate.features.FeatureAnalyzer, net.imglib2.algorithm.MultiThreaded)
  • fiji.plugin.trackmate.action.TrackMateActionFactory
  • fiji.plugin.trackmate.TrackMateModule
    • fiji.plugin.trackmate.features.edges.EdgeAnalyzer (also extends net.imglib2.algorithm.Benchmark, fiji.plugin.trackmate.features.FeatureAnalyzer, net.imglib2.algorithm.MultiThreaded)
    • fiji.plugin.trackmate.features.FeatureAnalyzer
      • fiji.plugin.trackmate.features.edges.EdgeAnalyzer (also extends net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.MultiThreaded)
      • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>
      • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactoryBase<T>
        • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>
        • fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>
      • fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>
      • fiji.plugin.trackmate.features.track.TrackAnalyzer (also extends net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.MultiThreaded)
    • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>
    • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactoryBase<T>
      • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>
      • fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>
    • fiji.plugin.trackmate.detection.SpotDetectorFactory<T>
    • fiji.plugin.trackmate.detection.SpotDetectorFactoryBase<T>
      • fiji.plugin.trackmate.detection.SpotDetectorFactory<T>
      • fiji.plugin.trackmate.detection.SpotGlobalDetectorFactory<T>
    • fiji.plugin.trackmate.detection.SpotGlobalDetectorFactory<T>
    • fiji.plugin.trackmate.tracking.SpotImageTrackerFactory
    • fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>
    • fiji.plugin.trackmate.tracking.SpotTrackerFactory
      • fiji.plugin.trackmate.tracking.SpotImageTrackerFactory
    • fiji.plugin.trackmate.features.track.TrackAnalyzer (also extends net.imglib2.algorithm.Benchmark, fiji.plugin.trackmate.features.FeatureAnalyzer, net.imglib2.algorithm.MultiThreaded)
    • fiji.plugin.trackmate.action.TrackMateActionFactory
    • fiji.plugin.trackmate.visualization.ViewFactory
  • fiji.plugin.trackmate.visualization.ViewFactory
• fiji.plugin.trackmate.gui.displaysettings.SliderPanelDouble.RangeListener
• fiji.plugin.trackmate.features.spot.SpotAnalyzer<T>
• fiji.plugin.trackmate.graph.StringFormater<V>
• fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement
• fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElementVisitor
• fiji.plugin.trackmate.action.TrackMateAction
• fiji.plugin.trackmate.visualization.TrackMateModelView
• fiji.plugin.trackmate.gui.wizard.WizardSequence

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • fiji.plugin.trackmate.Dimension
    • fiji.plugin.trackmate.action.LabelImgExporter.LabelIdPainting
    • fiji.plugin.trackmate.action.CTCExporter.ExportType
    • fiji.plugin.trackmate.gui.wizard.TransitionAnimator.Direction
    • fiji.plugin.trackmate.gui.displaysettings.DisplaySettings.TrackDisplayMode
    • fiji.plugin.trackmate.gui.displaysettings.DisplaySettings.TrackMateObject
    • fiji.plugin.trackmate.tracking.overlap.OverlapTracker.IoUCalculation
    • fiji.plugin.trackmate.util.FileChooser.DialogType
    • fiji.plugin.trackmate.util.FileChooser.SelectionMode