fiji.plugin.trackmate.action.closegaps

Class CloseGapsByLinearInterpolation

java.lang.Object

fiji.plugin.trackmate.action.closegaps.CloseGapsByLinearInterpolation

All Implemented Interfaces:

GapClosingMethod

public class CloseGapsByLinearInterpolation
extends Object
implements GapClosingMethod

This action allows to close gaps in tracks by creating new intermediate spots which are located at interpolated positions. This is useful if you want to measure signal intensity changing during time, even if the spot is not visible. Thus, TrackMate is usable for Fluorescence Recovery after Photobleaching (FRAP) analysis. Author: Robert Haase, Scientific Computing Facility, MPI-CBG, rhaase@mpi-cbg.de Date: June 2016

Nested Class Summary

Nested classes/interfaces inherited from interface fiji.plugin.trackmate.action.closegaps.GapClosingMethod

GapClosingMethod.GapClosingParameter

Field Summary

Fields

Modifier and Type	Field and Description
static String	INFO_TEXT
static String	NAME

Constructor Summary

Constructors

Constructor and Description
CloseGapsByLinearInterpolation()

Method Summary

Modifier and Type	Method and Description
void	execute(TrackMate trackmate, Logger logger) Performs the gap closing.
String	getInfoText() Returns a html string containing a descriptive information about this module.
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface fiji.plugin.trackmate.action.closegaps.GapClosingMethod

countMissingSpots, countMissingSpots, getAllGaps, getParameters, interpolate, interpolateFeature, makeSettingsForRoiAround

Field Detail

INFO_TEXT

public static final String INFO_TEXT

See Also:

Constant Field Values

NAME

public static final String NAME

See Also:

Constant Field Values

Constructor Detail

CloseGapsByLinearInterpolation

public CloseGapsByLinearInterpolation()

Method Detail

execute

public void execute(TrackMate trackmate,
                    Logger logger)

Description copied from interface: GapClosingMethod

Performs the gap closing.

Specified by:

execute in interface GapClosingMethod

getInfoText

public String getInfoText()

Description copied from interface: GapClosingMethod

Returns a html string containing a descriptive information about this module.

Specified by:

getInfoText in interface GapClosingMethod

Returns:

a html string.

toString

public String toString()

Overrides:

toString in class Object