fiji.plugin.trackmate.tracking.kalman

Class AdvancedKalmanTracker

java.lang.Object

fiji.plugin.trackmate.tracking.kalman.AdvancedKalmanTracker

All Implemented Interfaces:

SpotTracker, Algorithm, Benchmark, MultiThreaded, OutputAlgorithm<org.jgrapht.graph.SimpleWeightedGraph<Spot,org.jgrapht.graph.DefaultWeightedEdge>>, Cancelable

public class AdvancedKalmanTracker
extends Object
implements SpotTracker, Benchmark, Cancelable

Kalman tracker factory with features cost addition and segment splitting / merging.

Author:

G. Letort (Institut Pasteur)

Field Summary

Fields

Modifier and Type	Field and Description
protected Map<String,Object>	settings

Constructor Summary

Constructors

Constructor and Description
AdvancedKalmanTracker(SpotCollection spots, Map<String,Object> settings)

Method Summary

Modifier and Type	Method and Description
void	cancel(String reason)
boolean	checkInput()
protected boolean	checkSettingsValidity(Map<String,Object> settings, StringBuilder str)
String	getCancelReason()
String	getErrorMessage()
int	getNumThreads()
long	getProcessingTime()
org.jgrapht.graph.SimpleWeightedGraph<Spot,org.jgrapht.graph.DefaultWeightedEdge>	getResult()
boolean	isCanceled()
boolean	process()
void	setLogger(Logger logger) Sets the Logger instance that will receive messages from this SpotTracker.
void	setNumThreads()
void	setNumThreads(int numThreads)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

settings

protected final Map<String,Object> settings

Constructor Detail

AdvancedKalmanTracker

public AdvancedKalmanTracker(SpotCollection spots,
                             Map<String,Object> settings)

Parameters:

spots - the spots to track.

settings - tracker specific settings list

Method Detail

getResult

public org.jgrapht.graph.SimpleWeightedGraph<Spot,org.jgrapht.graph.DefaultWeightedEdge> getResult()

Specified by:

getResult in interface OutputAlgorithm<org.jgrapht.graph.SimpleWeightedGraph<Spot,org.jgrapht.graph.DefaultWeightedEdge>>

checkInput

public boolean checkInput()

Specified by:

checkInput in interface Algorithm

process

public boolean process()

Specified by:

process in interface Algorithm

getErrorMessage

public String getErrorMessage()

Specified by:

getErrorMessage in interface Algorithm

setNumThreads

public void setNumThreads()

Specified by:

setNumThreads in interface MultiThreaded

setNumThreads

public void setNumThreads(int numThreads)

Specified by:

setNumThreads in interface MultiThreaded

getNumThreads

public int getNumThreads()

Specified by:

getNumThreads in interface MultiThreaded

getProcessingTime

public long getProcessingTime()

Specified by:

getProcessingTime in interface Benchmark

setLogger

public void setLogger(Logger logger)

Description copied from interface: SpotTracker

Sets the Logger instance that will receive messages from this SpotTracker.

Specified by:

setLogger in interface SpotTracker

Parameters:

logger - the logger to echo messages to.

checkSettingsValidity

protected boolean checkSettingsValidity(Map<String,Object> settings,
                                        StringBuilder str)

isCanceled

public boolean isCanceled()

Specified by:

isCanceled in interface Cancelable

cancel

public void cancel(String reason)

Specified by:

cancel in interface Cancelable

getCancelReason

public String getCancelReason()

Specified by:

getCancelReason in interface Cancelable