fiji.plugin.trackmate.features

Class TrackFeatureCalculator

java.lang.Object

net.imglib2.algorithm.MultiThreadedAlgorithm

net.imglib2.algorithm.MultiThreadedBenchmarkAlgorithm

fiji.plugin.trackmate.features.TrackFeatureCalculator

All Implemented Interfaces:

Algorithm, Benchmark, MultiThreaded, Cancelable

public class TrackFeatureCalculator
extends MultiThreadedBenchmarkAlgorithm
implements Cancelable

A class dedicated to centralizing the calculation of the numerical features of tracks, through TrackAnalyzers.

Author:

Jean-Yves Tinevez - 2013

Field Summary

Fields inherited from class net.imglib2.algorithm.MultiThreadedBenchmarkAlgorithm

processingTime

Fields inherited from class net.imglib2.algorithm.MultiThreadedAlgorithm

errorMessage, numThreads

Constructor Summary

Constructors

Constructor and Description
TrackFeatureCalculator(Model model, Settings settings, boolean doLogIt)

Method Summary

Modifier and Type	Method and Description
void	cancel(String reason)
boolean	checkInput()
void	computeTrackFeatures(Collection<Integer> trackIDs, boolean doLogIt) Calculates all the track features configured in the Settings object for the specified tracks.
String	getCancelReason()
boolean	isCanceled()
boolean	process() Calculates the track features configured in the Settings for all the tracks of this model.

Methods inherited from class net.imglib2.algorithm.MultiThreadedBenchmarkAlgorithm

getProcessingTime

Methods inherited from class net.imglib2.algorithm.MultiThreadedAlgorithm

getErrorMessage, getNumThreads, setNumThreads, setNumThreads

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TrackFeatureCalculator

public TrackFeatureCalculator(Model model,
                              Settings settings,
                              boolean doLogIt)

Method Detail

checkInput

public boolean checkInput()

Specified by:

checkInput in interface Algorithm

process

public boolean process()

Calculates the track features configured in the Settings for all the tracks of this model.

Specified by:

process in interface Algorithm

computeTrackFeatures

public void computeTrackFeatures(Collection<Integer> trackIDs,
                                 boolean doLogIt)

Calculates all the track features configured in the Settings object for the specified tracks.

isCanceled

public boolean isCanceled()

Specified by:

isCanceled in interface Cancelable

cancel

public void cancel(String reason)

Specified by:

cancel in interface Cancelable

getCancelReason

public String getCancelReason()

Specified by:

getCancelReason in interface Cancelable