fiji.plugin.trackmate.util

Class DetectionPreview

java.lang.Object

fiji.plugin.trackmate.util.DetectionPreview

public class DetectionPreview
extends Object

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	DetectionPreview.Builder

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	DetectionPreview(Model model, Settings settings, SpotDetectorFactoryBase<?> detectorFactory, Supplier<Map<String,Object>> detectionSettingsSupplier, Supplier<Integer> currentFrameSupplier, DoubleConsumer thresholdUpdater, String axisLabel, String thresholdKey)

Method Summary

Modifier and Type	Method and Description
static DetectionPreview.Builder	create()
Logger	getLogger()
DetectionPreviewPanel	getPanel()
protected void	preview(Model model, Settings settings, SpotDetectorFactoryBase<?> detectorFactory, Map<String,Object> detectorSettings, int frame, String thresholdKey)
protected Pair<Model,Double>	runPreviewDetection(Settings settings, int frame, SpotDetectorFactoryBase<?> detectorFactory, Map<String,Object> detectorSettings, String thresholdKey) Runs the preview with the specified parameters.
protected void	updateModelAndHistogram(Model targetModel, Model sourceModel, int frame, double threshold)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DetectionPreview

protected DetectionPreview(Model model,
                           Settings settings,
                           SpotDetectorFactoryBase<?> detectorFactory,
                           Supplier<Map<String,Object>> detectionSettingsSupplier,
                           Supplier<Integer> currentFrameSupplier,
                           DoubleConsumer thresholdUpdater,
                           String axisLabel,
                           String thresholdKey)

Method Detail

getPanel

public DetectionPreviewPanel getPanel()

getLogger

public Logger getLogger()

preview

protected void preview(Model model,
                       Settings settings,
                       SpotDetectorFactoryBase<?> detectorFactory,
                       Map<String,Object> detectorSettings,
                       int frame,
                       String thresholdKey)

runPreviewDetection

protected Pair<Model,Double> runPreviewDetection(Settings settings,
                                                 int frame,
                                                 SpotDetectorFactoryBase<?> detectorFactory,
                                                 Map<String,Object> detectorSettings,
                                                 String thresholdKey)

Runs the preview with the specified parameters.

Parameters:

settings - the settings object to use as preview. Will be used for its image and ROI fields.

frame - the frame in which to perform the preview.

detectorFactory - the detector to use for the preview.

detectorSettings - suitable detection settings for the detector.

thresholdKey - a key to a parameter that is used by the detector to threshold spots based on their quality. This will be used to configure the preview so that the generated histogram is interactive. If null or not used by the detector, this is simply ignored.

Returns:

a pair of objects: A) The model that contains the results of the preview (normally, the visible spots in the specified frame). B) The threshold value in case the thresholdKey parameter is used. This threshold value is to be used with the updateModelAndHistogram(Model, Model, int, double) method to properly display the quality histogram.

updateModelAndHistogram

protected void updateModelAndHistogram(Model targetModel,
                                       Model sourceModel,
                                       int frame,
                                       double threshold)

create

public static DetectionPreview.Builder create()