fiji.plugin.trackmate.util.cli

Class CondaCLIConfigurator

java.lang.Object

fiji.plugin.trackmate.util.cli.CLIConfigurator

fiji.plugin.trackmate.util.cli.CondaCLIConfigurator

public abstract class CondaCLIConfigurator
extends CLIConfigurator

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	CondaCLIConfigurator.CondaEnvironmentCommand

Nested classes/interfaces inherited from class fiji.plugin.trackmate.util.cli.CLIConfigurator

CLIConfigurator.AbstractStringArgument<T extends CLIConfigurator.AbstractStringArgument<T>>, CLIConfigurator.Argument<T extends CLIConfigurator.Argument<T,O>,O>, CLIConfigurator.ArgumentVisitor, CLIConfigurator.BoundedValueArgument<T extends CLIConfigurator.BoundedValueArgument<T,O>,O>, CLIConfigurator.ChoiceAdder, CLIConfigurator.ChoiceArgument, CLIConfigurator.DoubleAdder, CLIConfigurator.DoubleArgument, CLIConfigurator.Flag, CLIConfigurator.FlagAdder, CLIConfigurator.IntAdder, CLIConfigurator.IntArgument, CLIConfigurator.PathAdder, CLIConfigurator.PathArgument, CLIConfigurator.SelectableArguments, CLIConfigurator.StringAdder, CLIConfigurator.StringArgument

Field Summary

Fields

Modifier and Type	Field and Description
static String	KEY_CONDA_ENV

Fields inherited from class fiji.plugin.trackmate.util.cli.CLIConfigurator

arguments, selectables, translators

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	CondaCLIConfigurator()

Method Summary

Modifier and Type	Method and Description
protected abstract String	getCommand() Returns the command that must be run in the configured conda environment.
CondaCLIConfigurator.CondaEnvironmentCommand	getCommandArg() Returns the command object of this tool.

Methods inherited from class fiji.plugin.trackmate.util.cli.CLIConfigurator

addChoiceArgument, addDoubleArgument, addExtraArgument, addFlag, addIntArgument, addPathArgument, addSelectableArguments, addStringArgument, check, getArguments, getSelectables, getSelectedArguments, setTranslator, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

KEY_CONDA_ENV

public static final String KEY_CONDA_ENV

See Also:

Constant Field Values

Constructor Detail

CondaCLIConfigurator

protected CondaCLIConfigurator()

Method Detail

getCommandArg

public CondaCLIConfigurator.CondaEnvironmentCommand getCommandArg()

Description copied from class: CLIConfigurator

Returns the command object of this tool.

Specified by:

getCommandArg in class CLIConfigurator

Returns:

the command object, as an argument.

getCommand

protected abstract String getCommand()

Returns the command that must be run in the configured conda environment. In case the command is made of several tokens, they can be returned separated by space (as in a normal command line).

Returns:

the command for this tool.