All Classes
AbstractAnimator
AbstractEdgeAnalyzer
AbstractFeatureGrapher
AbstractProvider
AbstractSemiAutoTracker
AbstractSemiAutoTracker.SearchRegion
AbstractSpotFeatureAnalyzer
AbstractSpotFitter
AbstractSpotFitter.Observation
AbstractTMAction
AbstractTrackAnalyzer
AbstractTrackMateModelView
ActionChooserDescriptor
ActionChooserPanel
ActionProvider
AdvancedKalmanTracker
AdvancedKalmanTrackerFactory
AdvancedKalmanTrackerSettingsPanel
AllSpotsTableView
AlphanumComparator
AutoNamingAction
AutoNamingAction.Factory
AutoNamingController
AutoNamingPanel
AutoNamingPerformer
AutoNamingRule
BoundedValue
BoundedValue.UpdateListener
BoundedValueDouble
BoundedValueDouble.UpdateListener
BranchTableView
BranchTableView.Branch
CaptureOverlayAction
CaptureOverlayAction.Factory
CaptureOverlayPanel
CategoryJComboBox
ChartExporter
ChooseDetectorDescriptor
ChooseTrackerDescriptor
CLIConfigurator
CLIConfigurator.AbstractStringArgument
CLIConfigurator.Argument
CLIConfigurator.ArgumentVisitor
CLIConfigurator.BoundedValueArgument
CLIConfigurator.ChoiceArgument
CLIConfigurator.DoubleArgument
CLIConfigurator.Flag
CLIConfigurator.IntArgument
CLIConfigurator.PathArgument
CLIConfigurator.SelectableArguments
CLIConfigurator.StringArgument
CliGuiBuilder
CLIUtils
CLIUtils.LoggerTailerListener
CloseGapsAction
CloseGapsAction.Factory
CloseGapsByDetection
CloseGapsByLinearInterpolation
CloseGapsController
CloseGapsPanel
ColorIcon
Colormap
ColormapIO
CommandBuilder
CommandCLIConfigurator
CommandCLIConfigurator.ExecutablePath
CommonTrackMateArguments
ComputeDistanceToRoiAction
ComputeDistanceToRoiAction.DistanceToRoiFeature
ComputeDistanceToRoiAction.Factory
CondaCLIConfigurator
CondaCLIConfigurator.CondaEnvironmentCommand
CondaPathConfigCommand
ConfigTrackMateDisplaySettings
ConfigurationPanel
ConfigureViewsDescriptor
ConfigureViewsPanel
ConvexBranchesDecomposition
ConvexBranchesDecomposition.TrackBranchDecomposition
ConvexHull
CopyTrackNameNamingRule
CostFunction
CostMatrixCreator
CSVExporter
CTCExporter
CTCExporter.ExportType
CTCExporterAction
CTCExporterAction.Factory
CVMKalmanFilter
DefaultAutoNamingRule
DefaultCostMatrixCreator
DefaultCostMatrixCreator.Assignment
DefaultFileFilter
DefaultFileFilter.EditorFileFilter
DefaultFileFilter.ImageFileFilter
DetectionPreview
DetectionPreview.Builder
DetectionPreviewPanel
DetectionUtils
DetectorKeys
DetectorProvider
Dimension
DirectionalChangeAnalyzer
DisplaySettings
DisplaySettings.TrackDisplayMode
DisplaySettings.TrackMateObject
DisplaySettings.UpdateListener
DisplaySettingsIO
DisplaySettingsPanel
DogDetector
DogDetectorConfigurationPanel
DogDetectorFactory
EdgeAnalyzer
EdgeAnalyzerProvider
EdgeCollectionDataset
EdgeFeatureCalculator
EdgeFeatureGrapher
EdgeSpeedAnalyzer
EdgeTargetAnalyzer
EdgeTimeLocationAnalyzer
EverythingDisablerAndReenabler
ExecuteDetectionDescriptor
ExecuteTrackingDescriptor
ExportableChartPanel
ExportableChartValueTable
ExportAllSpotsStatsAction
ExportAllSpotsStatsAction.Factory
ExportStatsTablesAction
ExportStatsTablesAction.Factory
ExportTracksToXML
ExportTracksToXML.Factory
ExtractTrackStackAction
ExtractTrackStackAction.ExtractTrackStackActionFactory
FeatureAnalyzer
FeatureColorGenerator
FeatureDisplaySelector
FeatureFilter
FeatureModel
FeaturePenaltyCostFunction
FeaturePlotSelectionPanel
FeaturePlotSelectionPanel.PlotAction
FeatureUtils
FileChooser
FileChooser.DialogType
FileChooser.SelectionMode
FilterGuiPanel
FilterPanel
FlagNode
Fonts
FromContinuousBranches
Function1
Function2
GapClosingMethod
GapClosingMethod.GapClosingParameter
GlasbeyLut
GrapherDescriptor
GrapherPanel
GraphSegmentSplitter
GraphUtils
GuiUtils
HessianDetector
HessianDetectorConfigurationPanel
HessianDetectorFactory
HyperStackDisplayer
HyperStackDisplayerFactory
Icons
IcyTrackExporter
IcyTrackExporter.Factory
IcyTrackFormatWriter
IJRoiExporter
IJRoiExporter.IJRoiExporterAction
IJRoiExporter.IJRoiExporterActionFactory
ImageHelper
InfoPane
InitFilterDescriptor
InitFilterPanel
IOUtils
ISBIChallengeExporter
ISBIChallengeExporter.Factory
JaqamanLinker
JaqamanLinkingCostMatrixCreator
JaqamanSegmentCostMatrixCreator
JGraphXAdapter
JLabelLogger
JPanelAdvancedKalmanTrackerSettingsMain
JPanelFeaturePenalty
JPanelFeatureSelectionGui
JPanelTrackerSettingsMain
KalmanTracker
KalmanTrackerConfigPanel
KalmanTrackerFactory
LabelImageDetector
LabelImageDetectorConfigurationPanel
LabelImageDetectorFactory
LabelImgExporter
LabelImgExporter.Factory
LabelImgExporter.LabelIdPainting
LabelImgExporter.SpotAsDotWriter
LabelImgExporter.SpotRoiWriter
LabelImgExporter.SpotWriter
LabelImgExporterPanel
LAPJV
LAPTrackerSettingsPanel
LAPUtils
LoadTrackMatePlugIn
LogDetector
LogDetectorConfigurationPanel
LogDetectorFactory
Logger
Logger.SlaveLogger
Logger.StringBuilderLogger
LogHistogramDataset
LogPanel
LogPanelDescriptor2
LogRecorder
ManualDetectorConfigurationPanel
ManualDetectorFactory
ManualEdgeColorAnalyzer
ManualEdgeColorGenerator
ManualEdgePerSpotColorGenerator
ManualSpotColorAnalyzerFactory
ManualSpotColorGenerator
ManualSpotPerEdgeColorGenerator
ManualTrackerFactory
ManualTrackingPlugIn
MaskDetectorConfigurationPanel
MaskDetectorFactory
MaskUtils
MedianFilter2D
MergeFileAction
MergeFileAction.Factory
Model
ModelChangeEvent
ModelChangeListener
ModelDataset
ModelEditActions
ModelFeatureUpdater
ModelTools
ModuleChooserPanel
MotilityLabExporter
MotilityLabExporter.Factory
mxScaledLabelShape
NearestNeighborFlagSearchOnKDTree
NearestNeighborTracker
NearestNeighborTrackerFactory
NearestNeighborTrackerSettingsPanel
OnRequestUpdater
OnRequestUpdater.Refreshable
OutputFunction
OverlapTracker
OverlapTracker.IoUCalculation
OverlapTrackerFactory
OverlapTrackerSettingsPanel
PainterThread
PainterThread.Paintable
PerEdgeFeatureColorGenerator
PerSpotFeatureColorGenerator
PerTrackFeatureColorGenerator
PlotNSpotsVsTimeAction
PlotNSpotsVsTimeAction.Factory
QualityHistogramChart
RandomSpotColorGenerator
RecomputeFeatureAction
RecomputeFeatureAction.Factory
RecursiveCumSum
ResetSpotTimeFeatureAction
ResetSpotTimeFeatureAction.Factory
ResizableDoubleArray
SaveAction
SaveDescriptor
SearchBar
SegmentTracker
SegmentTrackerFactory
SelectionChangeEvent
SelectionChangeListener
SelectionModel
SemiAutoTracker
Settings
SettingsPersistence
SimpleLAPTrackerSettingsPanel
SimpleSparseLAPTrackerFactory
SliderPanel
SliderPanelDouble
SliderPanelDouble.RangeListener
SmallFeaturePlotSelectionPanel
SortedDepthFirstIterator
SparseCostMatrix
SparseLAPFrameToFrameTracker
SparseLAPTracker
SparseLAPTrackerFactory
Spot
SpotAnalyzer
SpotAnalyzer.DummySpotAnalyzer
SpotAnalyzerFactory
SpotAnalyzerFactoryBase
SpotAnalyzerProvider
SpotCollection
SpotCollectionDataset
SpotColorGenerator
SpotColorGeneratorPerEdgeFeature
SpotColorGeneratorPerTrackFeature
SpotContrastAndSNRAnalyzer
SpotContrastAndSNRAnalyzerFactory
SpotDetector
SpotDetectorDescriptor
SpotDetectorFactory
SpotDetectorFactoryBase
SpotEditTool
SpotEditToolConfigPanel
SpotFeatureCalculator
SpotFeatureGrapher
SpotFilterDescriptor
SpotFitEllipseAnalyzer
SpotFitEllipseAnalyzerFactory
SpotFitter
SpotFitterController
SpotFitterPanel
SpotGaussianFitter2D
SpotGaussianFitter2DFixedRadius
SpotGaussianFitter3D
SpotGaussianFitter3DFixedRadius
SpotGaussianFittingAction
SpotGaussianFittingAction.Factory
SpotGlobalDetector
SpotGlobalDetectorFactory
SpotIconGrabber
SpotImageTrackerFactory
SpotImageUpdater
SpotIntensityMultiCAnalyzer
SpotIntensityMultiCAnalyzerFactory
SpotMorphologyAnalyzerFactory
SpotMorphologyAnalyzerProvider
SpotNeighborhood
SpotNeighborhoodCursor
SpotOverlay
SpotRoi
SpotShapeAnalyzer
SpotShapeAnalyzerFactory
SpotTracker
SpotTrackerDescriptor
SpotTrackerFactory
SpotUtil
SquareDistCostFunction
SquareNeighborhood3x3
SquareNeighborhoodCursor3x3
StartDialogDescriptor
StringFormater
StyleElements
StyleElements.BooleanElement
StyleElements.BoundedDoubleElement
StyleElements.ColorElement
StyleElements.ColormapElement
StyleElements.DoubleElement
StyleElements.EnumElement
StyleElements.FeatureElement
StyleElements.FontElement
StyleElements.IntElement
StyleElements.LabelElement
StyleElements.ListElement
StyleElements.Separator
StyleElements.StringElement
StyleElements.StyleElement
StyleElements.StyleElementVisitor
TablePanel
TGMMImporter
Threads
ThresholdDetector
ThresholdDetectorConfigurationPanel
ThresholdDetectorFactory
TimeDirectedDepthFirstIterator
TimeDirectedNeighborIndex
TimeDirectedSortedDepthFirstIterator
TMUtils
TmXmlKeys
TmXmlReader
TmXmlWriter
TrackAnalyzer
TrackAnalyzerProvider
TrackBranchAnalysis
TrackBranchAnalysis.Factory
TrackBranchingAnalyzer
TrackCollectionDataset
TrackColorGenerator
TrackDurationAnalyzer
TrackerKeys
TrackerProvider
TrackFeatureCalculator
TrackFeatureGrapher
TrackFilterDescriptor
TrackIndexAnalyzer
TrackLocationAnalyzer
TrackMate
TrackMateAction
TrackMateActionFactory
TrackMateModelView
TrackMateModule
TrackMatePlugIn
TrackMateRunner
TrackMateService
TrackMateSettingsBuilder
TrackMateWizardSequence
TrackModel
TrackMotilityAnalyzer
TrackNavigator
TrackOverlay
TrackScheme
TrackSchemeActions
TrackSchemeActions.EditAction
TrackSchemeFactory
TrackSchemeFrame
TrackSchemeGraphComponent
TrackSchemeGraphLayout
TrackSchemeKeyboardHandler
TrackSchemePopupMenu
TrackSchemeStylist
TrackSchemeSvgCanvas
TrackSchemeToolbar
TrackSpeedStatisticsAnalyzer
TrackSpotQualityFeatureAnalyzer
TrackTableView
TransitionAnimator
TransitionAnimator.Direction
TrimNotVisibleAction
TrimNotVisibleAction.Factory
UniformSpotColorGenerator
UniformTrackColorGenerator
ViewFactory
ViewProvider
ViewUtils
WholeTrackFeatureColorGenerator
WizardController
WizardPanel
WizardPanelDescriptor
WizardSequence
XYTextSimpleAnnotation