fiji.plugin.trackmate.action.closegaps

Class CloseGapsByDetection

java.lang.Object

fiji.plugin.trackmate.action.closegaps.CloseGapsByDetection

All Implemented Interfaces:

GapClosingMethod

public class CloseGapsByDetection
extends Object
implements GapClosingMethod

This action allows to close gaps in tracks by executing detection in the vicinity of position that are linearly interpolated.

Author:

Jean-Yves Tinevez

Nested Class Summary

Nested classes/interfaces inherited from interface fiji.plugin.trackmate.action.closegaps.GapClosingMethod

GapClosingMethod.GapClosingParameter

Field Summary

Fields

Modifier and Type	Field and Description
static String	INFO_TEXT
static String	NAME

Constructor Summary

Constructors

Constructor and Description
CloseGapsByDetection()

Method Summary

Modifier and Type	Method and Description
void	execute(TrackMate trackmate, Logger logger) Performs the gap closing.
String	getInfoText() Returns a html string containing a descriptive information about this module.
List<GapClosingMethod.GapClosingParameter>	getParameters() Returns the list of parameters required to configure this method.
static void	main(String[] args)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface fiji.plugin.trackmate.action.closegaps.GapClosingMethod

countMissingSpots, countMissingSpots, getAllGaps, interpolate, interpolateFeature, makeSettingsForRoiAround

Field Detail

INFO_TEXT

public static final String INFO_TEXT

See Also:

Constant Field Values

NAME

public static final String NAME

See Also:

Constant Field Values

Constructor Detail

CloseGapsByDetection

public CloseGapsByDetection()

Method Detail

getParameters

public List<GapClosingMethod.GapClosingParameter> getParameters()

Description copied from interface: GapClosingMethod

Returns the list of parameters required to configure this method.

The list will be used to autogenerate a configuration panel.

Specified by:

getParameters in interface GapClosingMethod

Returns:

a list of parameters.

execute

public void execute(TrackMate trackmate,
                    Logger logger)

Description copied from interface: GapClosingMethod

Performs the gap closing.

Specified by:

execute in interface GapClosingMethod

getInfoText

public String getInfoText()

Description copied from interface: GapClosingMethod

Returns a html string containing a descriptive information about this module.

Specified by:

getInfoText in interface GapClosingMethod

Returns:

a html string.

toString

public String toString()

Overrides:

toString in class Object

main

public static void main(String[] args)