Uses of Class
net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping.Group

Packages that use Group

Package	Description
net.preibisch.mvrecon.fiji.datasetmanager.grid
net.preibisch.mvrecon.fiji.plugin
net.preibisch.mvrecon.fiji.plugin.fusion
net.preibisch.mvrecon.fiji.plugin.interestpointdetection
net.preibisch.mvrecon.fiji.plugin.interestpointregistration.parameters
net.preibisch.mvrecon.fiji.spimdata
net.preibisch.mvrecon.fiji.spimdata.explorer.analyzeerror
net.preibisch.mvrecon.fiji.spimdata.stitchingresults
net.preibisch.mvrecon.process.deconvolution.util
net.preibisch.mvrecon.process.export
net.preibisch.mvrecon.process.interestpointregistration
net.preibisch.mvrecon.process.interestpointregistration.global
net.preibisch.mvrecon.process.interestpointregistration.global.linkremoval
net.preibisch.mvrecon.process.interestpointregistration.global.pointmatchcreating
net.preibisch.mvrecon.process.interestpointregistration.global.pointmatchcreating.strong
net.preibisch.mvrecon.process.interestpointregistration.global.pointmatchcreating.weak
net.preibisch.mvrecon.process.interestpointregistration.pairwise
net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation
net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping
net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.overlap
net.preibisch.mvrecon.process.n5api

Uses of Group in net.preibisch.mvrecon.fiji.datasetmanager.grid

Method parameters in net.preibisch.mvrecon.fiji.datasetmanager.grid with type arguments of type Group

Modifier and Type	Method	Description
static <AS extends mpicbg.spim.data.generic.AbstractSpimData<?>> void	RegularTranformHelpers.applyToSpimData(AS data, List<? extends Group<? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>>> viewDescriptions, RegularTranformHelpers.RegularTranslationParameters params, boolean applyToAllTimePoints)

Uses of Group in net.preibisch.mvrecon.fiji.plugin

Methods in net.preibisch.mvrecon.fiji.plugin with parameters of type Group

Modifier and Type	Method	Description
static double[]	Image_Fusion.determineInputBitDepth(Group<mpicbg.spim.data.sequence.ViewDescription> group, SpimData2 spimData, net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> virtual)
protected static boolean	Image_Deconvolution.export(net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> output, DeconvolutionGUI fusion, ImgExport exporter, Group<mpicbg.spim.data.sequence.ViewDescription> group)
protected static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> boolean	Image_Quality.export(net.imglib2.RandomAccessibleInterval<T> output, ExecutorService taskExecutor, T type, QualityGUI quality, ImgExport exporter, Group<mpicbg.spim.data.sequence.ViewDescription> group, double[] minmax)
static String	Image_Fusion.getTitle(int splittingType, Group<mpicbg.spim.data.sequence.ViewDescription> group)

Uses of Group in net.preibisch.mvrecon.fiji.plugin.fusion

Methods in net.preibisch.mvrecon.fiji.plugin.fusion that return types with arguments of type Group

Modifier and Type	Method	Description
List<Group<mpicbg.spim.data.sequence.ViewDescription>>	DeconvolutionGUI.getDeconvolutionGrouping(Group<mpicbg.spim.data.sequence.ViewDescription> group)
List<Group<mpicbg.spim.data.sequence.ViewDescription>>	DeconvolutionGUI.getFusionGroups()
List<Group<mpicbg.spim.data.sequence.ViewDescription>>	FusionExportInterface.getFusionGroups()
List<Group<mpicbg.spim.data.sequence.ViewDescription>>	FusionGUI.getFusionGroups()
static List<Group<mpicbg.spim.data.sequence.ViewDescription>>	FusionGUI.getFusionGroups(SpimData2 spimData, List<mpicbg.spim.data.sequence.ViewId> views, int splittingType)
List<Group<mpicbg.spim.data.sequence.ViewDescription>>	QualityGUI.getFusionGroups()

Methods in net.preibisch.mvrecon.fiji.plugin.fusion with parameters of type Group

Modifier and Type	Method	Description
List<Group<mpicbg.spim.data.sequence.ViewDescription>>	DeconvolutionGUI.getDeconvolutionGrouping(Group<mpicbg.spim.data.sequence.ViewDescription> group)

Uses of Group in net.preibisch.mvrecon.fiji.plugin.interestpointdetection

Methods in net.preibisch.mvrecon.fiji.plugin.interestpointdetection that return Group

Modifier and Type	Method	Description
protected Group<mpicbg.spim.data.sequence.ViewDescription>	DifferenceOfGUI.getGroupSelection(String dialogHeader, String text, List<Group<mpicbg.spim.data.sequence.ViewDescription>> groups)

Methods in net.preibisch.mvrecon.fiji.plugin.interestpointdetection that return types with arguments of type Group

Modifier and Type	Method	Description
protected List<Group<mpicbg.spim.data.sequence.ViewDescription>>	DifferenceOfGUI.getGroups()

Methods in net.preibisch.mvrecon.fiji.plugin.interestpointdetection with parameters of type Group

Modifier and Type	Method	Description
protected String	DifferenceOfGUI.nameForGroup(Group<mpicbg.spim.data.sequence.ViewDescription> group)

Method parameters in net.preibisch.mvrecon.fiji.plugin.interestpointdetection with type arguments of type Group

Modifier and Type	Method	Description
protected Group<mpicbg.spim.data.sequence.ViewDescription>	DifferenceOfGUI.getGroupSelection(String dialogHeader, String text, List<Group<mpicbg.spim.data.sequence.ViewDescription>> groups)

Uses of Group in net.preibisch.mvrecon.fiji.plugin.interestpointregistration.parameters

Methods in net.preibisch.mvrecon.fiji.plugin.interestpointregistration.parameters that return types with arguments of type Group

Modifier and Type	Method	Description
static HashSet<Group<mpicbg.spim.data.sequence.ViewId>>	AdvancedRegistrationParameters.getGroups(SpimData2 data, List<? extends mpicbg.spim.data.sequence.ViewId> views, boolean groupTiles, boolean groupIllums, boolean groupChannels, boolean groupTimePoints)
HashSet<Group<mpicbg.spim.data.sequence.ViewId>>	AdvancedRegistrationParameters.getGroups(SpimData2 data, List<mpicbg.spim.data.sequence.ViewId> views, boolean groupTiles, boolean groupIllums, boolean groupChannels)

Method parameters in net.preibisch.mvrecon.fiji.plugin.interestpointregistration.parameters with type arguments of type Group

Modifier and Type	Method	Description
PairwiseSetup<mpicbg.spim.data.sequence.ViewId>	AdvancedRegistrationParameters.pairwiseSetupInstance(BasicRegistrationParameters.RegistrationType registrationType, List<mpicbg.spim.data.sequence.ViewId> views, Set<Group<mpicbg.spim.data.sequence.ViewId>> groups)

Uses of Group in net.preibisch.mvrecon.fiji.spimdata

Methods in net.preibisch.mvrecon.fiji.spimdata that return types with arguments of type Group

Modifier and Type	Method	Description
static <V extends mpicbg.spim.data.sequence.ViewId> ArrayList<Group<V>>	SpimData2.filterGroupsForMissingViews(mpicbg.spim.data.generic.AbstractSpimData<?> data, Collection<Group<V>> groupsIn)	Removes Views in Groups that are missing, and entire groups if no views are left

Method parameters in net.preibisch.mvrecon.fiji.spimdata with type arguments of type Group

Modifier and Type	Method	Description
static <V extends mpicbg.spim.data.sequence.ViewId> ArrayList<Group<V>>	SpimData2.filterGroupsForMissingViews(mpicbg.spim.data.generic.AbstractSpimData<?> data, Collection<Group<V>> groupsIn)	Removes Views in Groups that are missing, and entire groups if no views are left

Uses of Group in net.preibisch.mvrecon.fiji.spimdata.explorer.analyzeerror

Fields in net.preibisch.mvrecon.fiji.spimdata.explorer.analyzeerror declared as Group

Modifier and Type	Field	Description
final Group<mpicbg.spim.data.sequence.ViewDescription>	AnalyzeErrorsUtil.SingleGroupError.group
final Group<mpicbg.spim.data.sequence.ViewDescription>	AnalyzeErrorsUtil.GroupPairResult.groupA
final Group<mpicbg.spim.data.sequence.ViewDescription>	AnalyzeErrorsUtil.GroupPairResult.groupB

Fields in net.preibisch.mvrecon.fiji.spimdata.explorer.analyzeerror with type parameters of type Group

Modifier and Type	Field	Description
final List<Group<mpicbg.spim.data.sequence.ViewDescription>>	AnalyzeErrorsUtil.SingleGroupError.connectedGroups

Constructors in net.preibisch.mvrecon.fiji.spimdata.explorer.analyzeerror with parameters of type Group

Modifier	Constructor	Description
	GroupPairResult(Group<mpicbg.spim.data.sequence.ViewDescription> groupA, Group<mpicbg.spim.data.sequence.ViewDescription> groupB, int count, int numCorr, double min, double avg, double max)
	SingleGroupError(Group<mpicbg.spim.data.sequence.ViewDescription> group, List<Group<mpicbg.spim.data.sequence.ViewDescription>> connectedGroups, int numCorr, double min, double avg, double max)

Constructor parameters in net.preibisch.mvrecon.fiji.spimdata.explorer.analyzeerror with type arguments of type Group

Modifier	Constructor	Description
	SingleGroupError(Group<mpicbg.spim.data.sequence.ViewDescription> group, List<Group<mpicbg.spim.data.sequence.ViewDescription>> connectedGroups, int numCorr, double min, double avg, double max)

Uses of Group in net.preibisch.mvrecon.fiji.spimdata.stitchingresults

Methods in net.preibisch.mvrecon.fiji.spimdata.stitchingresults that return types with arguments of type Group

Modifier and Type	Method	Description
Set<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>>	PairwiseLinkImpl.getPairwiseLinks()
Set<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>>	PairwiseLinkImpl.getPairwiseLinks()
Set<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>>	PairwiseLinkInterface.getPairwiseLinks()
Set<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>>	PairwiseLinkInterface.getPairwiseLinks()
Set<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>>	StitchingResults.getPairwiseLinks()
Set<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>>	StitchingResults.getPairwiseLinks()
Map<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>,PairwiseStitchingResult<mpicbg.spim.data.sequence.ViewId>>	StitchingResults.getPairwiseResults()
Map<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>,PairwiseStitchingResult<mpicbg.spim.data.sequence.ViewId>>	StitchingResults.getPairwiseResults()
net.imglib2.util.Pair<Group<C>,Group<C>>	PairwiseStitchingResult.pair()
net.imglib2.util.Pair<Group<C>,Group<C>>	PairwiseStitchingResult.pair()

Method parameters in net.preibisch.mvrecon.fiji.spimdata.stitchingresults with type arguments of type Group

Modifier and Type	Method	Description
PairwiseStitchingResult<mpicbg.spim.data.sequence.ViewId>	StitchingResults.getPairwiseResultsForPair(net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>> pair)
PairwiseStitchingResult<mpicbg.spim.data.sequence.ViewId>	StitchingResults.getPairwiseResultsForPair(net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>> pair)
void	StitchingResults.removePairwiseResultForPair(net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>> pair)
void	StitchingResults.removePairwiseResultForPair(net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>> pair)
void	StitchingResults.setPairwiseResultForPair(net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>> pair, PairwiseStitchingResult<mpicbg.spim.data.sequence.ViewId> res)
void	StitchingResults.setPairwiseResultForPair(net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>> pair, PairwiseStitchingResult<mpicbg.spim.data.sequence.ViewId> res)

Constructor parameters in net.preibisch.mvrecon.fiji.spimdata.stitchingresults with type arguments of type Group

Modifier	Constructor	Description
	PairwiseLinkImpl(Set<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>> results)
	PairwiseLinkImpl(Set<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>> results)
	PairwiseStitchingResult(net.imglib2.util.Pair<Group<C>,Group<C>> pair, net.imglib2.RealInterval boundingBox, net.imglib2.realtransform.AffineGet transform, double r, double hash)
	PairwiseStitchingResult(net.imglib2.util.Pair<Group<C>,Group<C>> pair, net.imglib2.RealInterval boundingBox, net.imglib2.realtransform.AffineGet transform, double r, double hash)

Uses of Group in net.preibisch.mvrecon.process.deconvolution.util

Methods in net.preibisch.mvrecon.process.deconvolution.util that return types with arguments of type Group

Modifier and Type	Method	Description
ArrayList<Group<V>>	ProcessInputImages.getGroups()
HashMap<Group<V>,net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>>	ProcessInputImages.getImages()
HashMap<Group<V>,net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>>	ProcessInputImages.getNormalizedWeights()
HashMap<Group<V>,net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>>	ProcessInputImages.getUnnormalizedWeights()
static <V extends mpicbg.spim.data.sequence.ViewId> HashMap<Group<V>,net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?>>	PSFPreparation.loadGroupTransformPSFs(PointSpreadFunctions pointSpreadFunctions, ProcessInputImages<V> fusion, boolean sameSizeForAll)
static <V extends mpicbg.spim.data.sequence.ViewId> HashMap<Group<V>,net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>>	ProcessInputImages.normalizeWeights(HashMap<Group<V>,net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>> unnormalizedWeights, List<Group<V>> groups, double osemspeedup, boolean additionalSmoothBlending, float maxDiffRange, float scalingRange)

Method parameters in net.preibisch.mvrecon.process.deconvolution.util with type arguments of type Group

Modifier and Type	Method	Description
static <V extends mpicbg.spim.data.sequence.ViewId> void	ProcessInputImages.cacheRandomAccessibleInterval(Collection<Group<V>> groups, int cellDim, int maxCacheSize, HashMap<Group<V>,net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>> images)
static <V extends mpicbg.spim.data.sequence.ViewId> void	ProcessInputImages.cacheRandomAccessibleInterval(Collection<Group<V>> groups, int cellDim, int maxCacheSize, HashMap<Group<V>,net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>> images)
static <V extends mpicbg.spim.data.sequence.ViewId> void	ProcessInputImages.copyRandomAccessibleInterval(Collection<Group<V>> groups, ExecutorService service, net.imglib2.img.ImgFactory<net.imglib2.type.numeric.real.FloatType> factory, HashMap<Group<V>,net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>> images)
static <V extends mpicbg.spim.data.sequence.ViewId> void	ProcessInputImages.copyRandomAccessibleInterval(Collection<Group<V>> groups, ExecutorService service, net.imglib2.img.ImgFactory<net.imglib2.type.numeric.real.FloatType> factory, HashMap<Group<V>,net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>> images)
static <V extends mpicbg.spim.data.sequence.ViewId> net.imglib2.Interval	ProcessInputImages.fuseGroups(mpicbg.spim.data.generic.AbstractSpimData<?> spimData, HashMap<Group<V>,net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>> tImgs, HashMap<Group<V>,net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>> tWeights, HashMap<V,net.imglib2.realtransform.AffineTransform3D> models, Collection<Group<V>> groups, net.imglib2.Interval boundingBox, double downsampling, float[] blendingRangeFusion, float[] blendingBorderFusion, float[] blendingRangeDecon, float[] blendingBorderDecon, Map<? extends mpicbg.spim.data.sequence.ViewId,mpicbg.models.AffineModel1D> intensityAdjustments)
static <V extends mpicbg.spim.data.sequence.ViewId> net.imglib2.Interval	ProcessInputImages.fuseGroups(mpicbg.spim.data.generic.AbstractSpimData<?> spimData, HashMap<Group<V>,net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>> tImgs, HashMap<Group<V>,net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>> tWeights, HashMap<V,net.imglib2.realtransform.AffineTransform3D> models, Collection<Group<V>> groups, net.imglib2.Interval boundingBox, double downsampling, float[] blendingRangeFusion, float[] blendingBorderFusion, float[] blendingRangeDecon, float[] blendingBorderDecon, Map<? extends mpicbg.spim.data.sequence.ViewId,mpicbg.models.AffineModel1D> intensityAdjustments)
static <V extends mpicbg.spim.data.sequence.ViewId> HashMap<Group<V>,net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>>	ProcessInputImages.normalizeWeights(HashMap<Group<V>,net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>> unnormalizedWeights, List<Group<V>> groups, double osemspeedup, boolean additionalSmoothBlending, float maxDiffRange, float scalingRange)
static <V extends mpicbg.spim.data.sequence.ViewId> HashMap<Group<V>,net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>>	ProcessInputImages.normalizeWeights(HashMap<Group<V>,net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>> unnormalizedWeights, List<Group<V>> groups, double osemspeedup, boolean additionalSmoothBlending, float maxDiffRange, float scalingRange)

Constructor parameters in net.preibisch.mvrecon.process.deconvolution.util with type arguments of type Group

Modifier	Constructor	Description
	ProcessInputImages(mpicbg.spim.data.generic.AbstractSpimData<?> spimData, Collection<Group<V>> groups, ExecutorService service, net.imglib2.Interval bb, double downsampling, boolean useWeightsFusion, float blendingRangeFusion, float blendingBorderFusion, boolean useWeightsDecon, float blendingRangeDeconvolution, float blendingBorderDeconvolution, Map<? extends mpicbg.spim.data.sequence.ViewId,mpicbg.models.AffineModel1D> intensityAdjustments)
	ProcessInputImages(mpicbg.spim.data.generic.AbstractSpimData<?> spimData, Collection<Group<V>> groups, ExecutorService service, net.imglib2.Interval bb, double downsampling, Map<? extends mpicbg.spim.data.sequence.ViewId,mpicbg.models.AffineModel1D> intensityAdjustments)
	ProcessInputImages(mpicbg.spim.data.generic.AbstractSpimData<?> spimData, Collection<Group<V>> groups, ExecutorService service, net.imglib2.Interval bb, Map<? extends mpicbg.spim.data.sequence.ViewId,mpicbg.models.AffineModel1D> intensityAdjustments)

Uses of Group in net.preibisch.mvrecon.process.export

Methods in net.preibisch.mvrecon.process.export with parameters of type Group

Modifier and Type	Method	Description
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> boolean	DisplayImage.exportImage(net.imglib2.algorithm.blocks.BlockSupplier<T> img, net.imglib2.Interval bb, double downsampling, double anisoF, String title, Group<? extends mpicbg.spim.data.sequence.ViewDescription> fusionGroup)
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> boolean	ExportLarge2DTIFF.exportImage(net.imglib2.algorithm.blocks.BlockSupplier<T> blocks, net.imglib2.Interval bb, double downsampling, double anisoF, String title, Group<? extends mpicbg.spim.data.sequence.ViewDescription> fusionGroup)
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> boolean	ExportN5Api.exportImage(net.imglib2.algorithm.blocks.BlockSupplier<T> blockSupplierIn, net.imglib2.Interval bb, double downsamplingF, double anisoF, String title, Group<? extends mpicbg.spim.data.sequence.ViewDescription> fusionGroup)
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> boolean	ImgExport.exportImage(net.imglib2.algorithm.blocks.BlockSupplier<T> img, net.imglib2.Interval bb, double downsampling, double anisoF, String title, Group<? extends mpicbg.spim.data.sequence.ViewDescription> fusionGroup)	Exports the image using a predefined min/max
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> boolean	OpenSeaDragon.exportImage(net.imglib2.algorithm.blocks.BlockSupplier<T> supplier, net.imglib2.Interval bb, double downsampling, double anisoF, String title, Group<? extends mpicbg.spim.data.sequence.ViewDescription> fusionGroup)
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> boolean	Save3dTIFF.exportImage(net.imglib2.algorithm.blocks.BlockSupplier<T> img, net.imglib2.Interval bb, double downsampling, double anisoF, String title, Group<? extends mpicbg.spim.data.sequence.ViewDescription> fusionGroup)
protected static String	OpenSeaDragon.getNameForFusionGroup(Group<mpicbg.spim.data.sequence.ViewDescription> group, int splittingType)

Uses of Group in net.preibisch.mvrecon.process.interestpointregistration

Method parameters in net.preibisch.mvrecon.process.interestpointregistration with type arguments of type Group

Modifier and Type	Method	Description
static void	TransformationTools.filterForOverlappingInterestPoints(Map<mpicbg.spim.data.sequence.ViewId,HashMap<String,Collection<InterestPoint>>> interestpoints, Collection<? extends Group<mpicbg.spim.data.sequence.ViewId>> groups, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> registrations, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.sequence.ViewDescription> viewDescriptions)
static void	TransformationTools.filterForOverlappingInterestPoints(Map<mpicbg.spim.data.sequence.ViewId,HashMap<String,Collection<InterestPoint>>> interestpoints, Collection<? extends Group<mpicbg.spim.data.sequence.ViewId>> groups, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> registrations, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.sequence.ViewDescription> viewDescriptions, int numThreads)

Uses of Group in net.preibisch.mvrecon.process.interestpointregistration.global

Methods in net.preibisch.mvrecon.process.interestpointregistration.global that return Group

Modifier and Type	Method	Description
static Group<mpicbg.spim.data.sequence.ViewId>	GlobalOptTwoRound.assembleViews(Set<mpicbg.models.Tile<?>> set, HashMap<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.models.Tile<?>> models)

Methods in net.preibisch.mvrecon.process.interestpointregistration.global that return types with arguments of type Group

Modifier and Type	Method	Description
static <M extends mpicbg.models.Model<M>> net.imglib2.util.Pair<HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>>,ArrayList<Group<mpicbg.spim.data.sequence.ViewId>>>	GlobalOpt.initGlobalOpt(M model, PointMatchCreator pmc, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews, Collection<Group<mpicbg.spim.data.sequence.ViewId>> groupsIn)

Method parameters in net.preibisch.mvrecon.process.interestpointregistration.global with type arguments of type Group

Modifier and Type	Method	Description
static <M extends mpicbg.models.Model<M>> HashMap<mpicbg.spim.data.sequence.ViewId,M>	GlobalOptIterative.computeModels(M model, boolean preAlign, PointMatchCreator pmc, IterativeConvergenceStrategy ics, LinkRemovalStrategy lms, Collection<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>> removedInconsistentPairs, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews, Collection<Group<mpicbg.spim.data.sequence.ViewId>> groupsIn)
static <M extends mpicbg.models.Model<M>> HashMap<mpicbg.spim.data.sequence.ViewId,M>	GlobalOptIterative.computeModels(M model, boolean preAlign, PointMatchCreator pmc, IterativeConvergenceStrategy ics, LinkRemovalStrategy lms, Collection<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>> removedInconsistentPairs, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews, Collection<Group<mpicbg.spim.data.sequence.ViewId>> groupsIn)
static <M extends mpicbg.models.Model<M> & mpicbg.models.Affine3D<M>> HashMap<mpicbg.spim.data.sequence.ViewId,M>	GlobalOptTwoRound.computeModels(M model, boolean preAlign, PointMatchCreator pmc, IterativeConvergenceStrategy csStrong, LinkRemovalStrategy lms, Collection<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>> removedInconsistentPairs, WeakLinkFactory wlf, ConvergenceStrategy csWeak, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews, Collection<Group<mpicbg.spim.data.sequence.ViewId>> groupsIn)
static <M extends mpicbg.models.Model<M> & mpicbg.models.Affine3D<M>> HashMap<mpicbg.spim.data.sequence.ViewId,M>	GlobalOptTwoRound.computeModels(M model, boolean preAlign, PointMatchCreator pmc, IterativeConvergenceStrategy csStrong, LinkRemovalStrategy lms, Collection<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>> removedInconsistentPairs, WeakLinkFactory wlf, ConvergenceStrategy csWeak, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews, Collection<Group<mpicbg.spim.data.sequence.ViewId>> groupsIn)
static <M extends mpicbg.models.Model<M>> HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>>	GlobalOptIterative.computeTiles(M model, boolean preAlign, PointMatchCreator pmc, IterativeConvergenceStrategy ics, LinkRemovalStrategy lms, Collection<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>> removedInconsistentPairs, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews, Collection<Group<mpicbg.spim.data.sequence.ViewId>> groupsIn)
static <M extends mpicbg.models.Model<M>> HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>>	GlobalOptIterative.computeTiles(M model, boolean preAlign, PointMatchCreator pmc, IterativeConvergenceStrategy ics, LinkRemovalStrategy lms, Collection<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>> removedInconsistentPairs, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews, Collection<Group<mpicbg.spim.data.sequence.ViewId>> groupsIn)
static <M extends mpicbg.models.Model<M> & mpicbg.models.Affine3D<M>> HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>>	GlobalOptTwoRound.computeTiles(M model, boolean preAlign, PointMatchCreator pmc, IterativeConvergenceStrategy csStrong, LinkRemovalStrategy lms, Collection<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>> removedInconsistentPairs, WeakLinkFactory wlf, ConvergenceStrategy csWeak, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews, Collection<Group<mpicbg.spim.data.sequence.ViewId>> groupsIn)
static <M extends mpicbg.models.Model<M> & mpicbg.models.Affine3D<M>> HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>>	GlobalOptTwoRound.computeTiles(M model, boolean preAlign, PointMatchCreator pmc, IterativeConvergenceStrategy csStrong, LinkRemovalStrategy lms, Collection<net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>> removedInconsistentPairs, WeakLinkFactory wlf, ConvergenceStrategy csWeak, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews, Collection<Group<mpicbg.spim.data.sequence.ViewId>> groupsIn)

Uses of Group in net.preibisch.mvrecon.process.interestpointregistration.global.linkremoval

Methods in net.preibisch.mvrecon.process.interestpointregistration.global.linkremoval that return Group

Modifier and Type	Method	Description
static Group<mpicbg.spim.data.sequence.ViewId>	MaxErrorLinkRemoval.findGroup(mpicbg.models.Tile<?> tile, HashMap<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.models.Tile<?>> map)

Methods in net.preibisch.mvrecon.process.interestpointregistration.global.linkremoval that return types with arguments of type Group

Modifier and Type	Method	Description
net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>	LinkRemovalStrategy.removeLink(mpicbg.models.TileConfiguration tc, HashMap<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.models.Tile<?>> map)
net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>	LinkRemovalStrategy.removeLink(mpicbg.models.TileConfiguration tc, HashMap<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.models.Tile<?>> map)
net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>	MaxErrorLinkRemoval.removeLink(mpicbg.models.TileConfiguration tc, HashMap<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.models.Tile<?>> map)
net.imglib2.util.Pair<Group<mpicbg.spim.data.sequence.ViewId>,Group<mpicbg.spim.data.sequence.ViewId>>	MaxErrorLinkRemoval.removeLink(mpicbg.models.TileConfiguration tc, HashMap<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.models.Tile<?>> map)

Uses of Group in net.preibisch.mvrecon.process.interestpointregistration.global.pointmatchcreating

Method parameters in net.preibisch.mvrecon.process.interestpointregistration.global.pointmatchcreating with type arguments of type Group

Modifier and Type	Method	Description
<M extends mpicbg.models.Model<M>> void	PointMatchCreator.assignPointMatches(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> tileMap, ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews)	assign pointmatches for all views that this object knows and that are present in tileMap.keySet(), which comes from getAllViews() plus what is in the group definition of the globalopt called last
<M extends mpicbg.models.Model<M>> void	PointMatchCreator.assignWeights(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> tileMap, ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews)	By default all weights are 1, if wanted one can adjust them here, otherwise simply return.

Uses of Group in net.preibisch.mvrecon.process.interestpointregistration.global.pointmatchcreating.strong

Method parameters in net.preibisch.mvrecon.process.interestpointregistration.global.pointmatchcreating.strong with type arguments of type Group

Modifier and Type	Method	Description
static <M extends mpicbg.models.Model<M>> void	ImageCorrelationPointMatchCreator.addPointMatches(Link<Group<? extends mpicbg.spim.data.sequence.ViewId>> link, mpicbg.models.Tile<M> tileA, mpicbg.models.Tile<M> tileB)
<M extends mpicbg.models.Model<M>> void	ImageCorrelationPointMatchCreator.assignPointMatches(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> tileMap, ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews)
<M extends mpicbg.models.Model<M>> void	InterestPointMatchCreator.assignPointMatches(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> tileMap, ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews)
<M extends mpicbg.models.Model<M>> void	ImageCorrelationPointMatchCreator.assignWeights(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> tileMap, ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews)
<M extends mpicbg.models.Model<M>> void	InterestPointMatchCreator.assignWeights(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> tileMap, ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews)
static <M extends mpicbg.models.Model<M>> void	InterestPointMatchCreator.assignWeights(List<? extends net.imglib2.util.Pair<? extends net.imglib2.util.Pair<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.sequence.ViewId>,? extends PairwiseResult<?>>> pairs, ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups, HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> tileMap)

Uses of Group in net.preibisch.mvrecon.process.interestpointregistration.global.pointmatchcreating.weak

Method parameters in net.preibisch.mvrecon.process.interestpointregistration.global.pointmatchcreating.weak with type arguments of type Group

Modifier and Type	Method	Description
<M extends mpicbg.models.Model<M>> void	MetaDataWeakLinkCreator.assignPointMatches(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> models2, ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews)
<M extends mpicbg.models.Model<M>> void	MetaDataWeakLinkCreator.assignWeights(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> tileMap, ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews)

Uses of Group in net.preibisch.mvrecon.process.interestpointregistration.pairwise

Methods in net.preibisch.mvrecon.process.interestpointregistration.pairwise with parameters of type Group

Modifier and Type	Method	Description
static <V> HashSet<V>	MatcherPairwiseTools.allViews(Group<? extends V> a, Group<? extends V> b)

Uses of Group in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation

Subclasses of Group in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation

Modifier and Type	Class	Description
class	Subset<V>

Fields in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation with type parameters of type Group

Modifier and Type	Field	Description
protected Set<Group<V>>	PairwiseSetup.groups

Methods in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation that return types with arguments of type Group

Modifier and Type	Method	Description
static <V> ArrayList<Group<V>>	Subset.createGroupsForAllViews(Set<V> views, Set<Group<V>> groups)	Create a Set of groups that contains all views, with |group| >= 1.
static <V> HashSet<Group<V>>	PairwiseSetup.findGroupsAssociatedWithSubset(HashSet<V> setsViews, Set<Group<V>> groups)
List<net.imglib2.util.Pair<Group<V>,Group<V>>>	Subset.getGroupedPairs()	Computes a list of grouped views that need to be compared, expressed as pairs.
List<net.imglib2.util.Pair<Group<V>,Group<V>>>	Subset.getGroupedPairs()	Computes a list of grouped views that need to be compared, expressed as pairs.
Set<Group<V>>	PairwiseSetup.getGroups()
Set<Group<V>>	Subset.getGroups()
static <V> Set<Group<V>>	PairwiseSetup.removeNonExistentViewsInGroups(List<V> views, Set<Group<V>> groups)	Remove all views in groups that do not exist in the views list - called from constructor

Methods in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation with parameters of type Group

Modifier and Type	Method	Description
static <V> HashSet<Integer>	PairwiseSetup.subsetsLinkedByGroup(List<? extends Set<V>> vSets, Group<V> group)	which subsets are part of a group - called by detectSubsets()

Method parameters in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation with type arguments of type Group

Modifier and Type	Method	Description
static <V> List<net.imglib2.util.Pair<V,V>>	AllToAll.allPairs(List<? extends V> views, Collection<? extends Group<V>> groups)
static <V> List<net.imglib2.util.Pair<V,V>>	AllToAllRange.allPairs(List<? extends V> views, Collection<? extends Group<V>> groups, RangeComparator<V> rangeComparator)
static <V extends mpicbg.spim.data.sequence.ViewId> List<net.imglib2.util.Pair<V,V>>	IndividualTimepoints.allPairs(List<? extends V> views, Collection<? extends Group<V>> groups)
static <V> ArrayList<Subset<V>>	PairwiseSetup.detectSubsets(List<V> views, List<net.imglib2.util.Pair<V,V>> pairs, Set<Group<V>> groups)	Given a list of views, pairs of views that need to be compared, and groups - find subsets that are not overlapping
static <V> HashSet<Group<V>>	PairwiseSetup.findGroupsAssociatedWithSubset(HashSet<V> setsViews, Set<Group<V>> groups)
static <V> ArrayList<net.imglib2.util.Pair<V,V>>	Subset.fixViews(HashSet<V> fixedSubsetViews, List<net.imglib2.util.Pair<V,V>> pairs, Set<Group<V>> groups)
static <V extends mpicbg.spim.data.sequence.ViewId> boolean	ReferenceTimepoint.groupsSpanTimepoints(Set<Group<V>> groups)	Checks if groups exist than span multiple timepoints
static <V> Set<Group<V>>	PairwiseSetup.removeNonExistentViewsInGroups(List<V> views, Set<Group<V>> groups)	Remove all views in groups that do not exist in the views list - called from constructor
static <V> ArrayList<net.imglib2.util.Pair<V,V>>	PairwiseSetup.removeRedundantPairs(List<net.imglib2.util.Pair<V,V>> pairs, Set<Group<V>> groups)	Checks all pairs if both views are contained in the same group, and if so removes the pair from the list - called from definePairs()

Constructor parameters in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation with type arguments of type Group

Modifier	Constructor	Description
	AllToAll(List<V> views, Set<Group<V>> groups)
	AllToAllRange(List<V> views, Set<Group<V>> groups, R rangeComparator)
	IndividualTimepoints(List<mpicbg.spim.data.sequence.ViewId> views, Set<Group<mpicbg.spim.data.sequence.ViewId>> groups)
	PairwiseSetup(List<V> views, Set<Group<V>> groups)	Sets up all pairwise comparisons 1) definePairs() 2) removeNonOverlappingPairs() - if wanted 3) reorderPairs() - if wanted 4) detectSubsets() 5) sortSubsets() - if wanted 6) getSubsets() within each subset 7) subset.fixViews( this.getDefaultFixedViews() ) 8) subset.fixViews() - fixed some of the views necessary for the strategy to work
	ReferenceTimepoint(List<mpicbg.spim.data.sequence.ViewId> views, Set<Group<mpicbg.spim.data.sequence.ViewId>> groups, int referenceTimepointId)
	ReferenceTimepoint(List<mpicbg.spim.data.sequence.ViewId> views, Set<Group<mpicbg.spim.data.sequence.ViewId>> groups, mpicbg.spim.data.sequence.TimePoint referenceTimepoint)

Uses of Group in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping

Methods in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping that return Group

Modifier and Type	Method	Description
static <V> Group<V>	Group.isContained(V view, Collection<? extends Group<V>> groupCollection)
static <V> Group<V>	Group.merge(Group<V> groupA, Group<V> groupB)	Merges two Groups of views
static <V> Group<V>	Group.mergeOverlapping(Group<V> groupA, Group<V> groupB)	Merges two Groups of views

Methods in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping that return types with arguments of type Group

Modifier and Type	Method	Description
static <V extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> List<Group<V>>	Group.combineBy(List<V> vds, Set<Class<? extends mpicbg.spim.data.generic.base.Entity>> groupingFactors)	Combining means to combine all views that share everything except what they are grouped after, e.g. channel (for example used to group GFP, RFP, DAPI for a Tile) v1: angle 0, channel 0 v2: angle 1, channel 0 v3: angle 1, channel 1 combine by channel: [v1], [v2 v3]
static <V extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> List<Group<V>>	Group.combineOrSplitBy(List<V> vds, Set<Class<? extends mpicbg.spim.data.generic.base.Entity>> groupingFactors, boolean combine)	Combining means to combine all views that share everything except what they are grouped after, e.g. channel (for example used to group GFP, RFP, DAPI for a Tile) Split means the opposite in some way, make a group for every instance of an attribute, e.g. channel (for example group everthing that is GFP and everything that it RFP) v1: angle 0, channel 0 v2: angle 1, channel 0 v3: angle 1, channel 1 combine by channel: [v1], [v2 v3] split by channel: [v1 v2], [v3]
static <V extends mpicbg.spim.data.sequence.ViewId> ArrayList<Group<V>>	Group.getGroupsSorted(Collection<Group<V>> groups)
static <V extends mpicbg.spim.data.sequence.ViewId> ArrayList<Group<V>>	Group.groupByChannel(List<V> viewIds, mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>,?> sd)
static <V> ArrayList<Group<V>>	Group.memberOf(V view, Set<Group<V>> groups)	Identifies all groups that a certain view is a member of
static <V> ArrayList<Group<V>>	Group.mergeAllOverlappingGroups(Collection<Group<V>> groups)	Merges all overlapping groups into a new List, the input remains unchanged
static <V> ArrayList<net.imglib2.util.Pair<Group<V>,Group<V>>>	Group.overlappingGroups(Collection<Group<V>> groups)	Identify all pairs of overlapping groups
static <V> ArrayList<net.imglib2.util.Pair<Group<V>,Group<V>>>	Group.overlappingGroups(Collection<Group<V>> groups)	Identify all pairs of overlapping groups
static <V extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> List<Group<V>>	Group.splitBy(List<V> vds, Set<Class<? extends mpicbg.spim.data.generic.base.Entity>> groupingFactors)	Split means to make a group for every instance of an attribute, e.g. channel (for example group everthing that is GFP and everything that it RFP) v1: angle 0, channel 0 v2: angle 1, channel 0 v3: angle 1, channel 1 split by channel: [v1 v2], [v3]
static <V extends mpicbg.spim.data.sequence.ViewId> ArrayList<Group<V>>	Group.toGroup(Collection<V> views)
static <V extends mpicbg.spim.data.sequence.ViewId> ArrayList<Group<V>>	Group.toGroups(Collection<V> views)
static ArrayList<Group<mpicbg.spim.data.sequence.ViewId>>	Group.toViewIdGroup(Collection<? extends mpicbg.spim.data.sequence.ViewId> views)
static ArrayList<Group<mpicbg.spim.data.sequence.ViewId>>	Group.toViewIdGroups(Collection<? extends mpicbg.spim.data.sequence.ViewId> views)

Methods in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping with parameters of type Group

Modifier and Type	Method	Description
static <V> void	Group.filterMissingViews(Group<V> group, Set<? extends V> missingViews)
X	Grouping.group(Group<V> group)
HashMap<String,Collection<GroupedInterestPoint<V>>>	InterestPointGrouping.group(Group<V> group)
static String	Group.gvids(Group<?> group)
static <V> Group<V>	Group.merge(Group<V> groupA, Group<V> groupB)	Merges two Groups of views
static <V> Group<V>	Group.mergeOverlapping(Group<V> groupA, Group<V> groupB)	Merges two Groups of views
static <V> boolean	Group.overlaps(Group<V> groupA, Group<V> groupB)	Test if there is any overlap between two groups (at least one view part of both)

Method parameters in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping with type arguments of type Group

Modifier and Type	Method	Description
static <V> boolean	Group.containsBoth(V viewIdA, V viewIdB, Collection<? extends Group<V>> groupCollection)
static <V extends mpicbg.spim.data.sequence.ViewId> ArrayList<Group<V>>	Group.getGroupsSorted(Collection<Group<V>> groups)
static <V> Group<V>	Group.isContained(V view, Collection<? extends Group<V>> groupCollection)
static <V> ArrayList<Group<V>>	Group.memberOf(V view, Set<Group<V>> groups)	Identifies all groups that a certain view is a member of
static <V> ArrayList<Group<V>>	Group.mergeAllOverlappingGroups(Collection<Group<V>> groups)	Merges all overlapping groups into a new List, the input remains unchanged
static <V> net.imglib2.util.Pair<Integer,Integer>	Group.nextOverlappingGroup(List<Group<V>> groups)	Identify the indices of the next overlapping groups ordered by size, or return null if none are overlapping
static <V> ArrayList<net.imglib2.util.Pair<Group<V>,Group<V>>>	Group.overlappingGroups(Collection<Group<V>> groups)	Identify all pairs of overlapping groups
static <V> void	Group.removeEmptyGroups(List<Group<V>> groups)

Uses of Group in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.overlap

Method parameters in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.overlap with type arguments of type Group

Modifier and Type	Method	Description
List<net.imglib2.util.Pair<V,V>>	SimpleBoundingBoxOverlap.generateOverlappingPairs(List<V> views, Collection<? extends Group<V>> groups)	Generate overlapping pairs directly without creating all n^2 pairs first.

Uses of Group in net.preibisch.mvrecon.process.n5api

Methods in net.preibisch.mvrecon.process.n5api with parameters of type Group

Modifier and Type	Method	Description
static int	N5ApiTools.channelIndex(Group<? extends mpicbg.spim.data.sequence.ViewDescription> queryGroup, ArrayList<mpicbg.spim.data.sequence.Channel> channels)
static int	N5ApiTools.timepointIndex(Group<? extends mpicbg.spim.data.sequence.ViewDescription> queryGroup, ArrayList<mpicbg.spim.data.sequence.TimePoint> timepoints)

Method parameters in net.preibisch.mvrecon.process.n5api with type arguments of type Group

Modifier and Type	Method	Description
static ArrayList<mpicbg.spim.data.sequence.Channel>	N5ApiTools.channels(List<? extends Group<? extends mpicbg.spim.data.sequence.ViewDescription>> fusionGroups)
static ArrayList<mpicbg.spim.data.sequence.TimePoint>	N5ApiTools.timepoints(List<? extends Group<? extends mpicbg.spim.data.sequence.ViewDescription>> fusionGroups)