Package net.preibisch.mvrecon.process.export

Class Save3dTIFF

java.lang.Object

net.preibisch.mvrecon.process.export.Save3dTIFF

All Implemented Interfaces:

Calibrateable, ImgExport

public class Save3dTIFF
extends Object
implements ImgExport, Calibrateable

Field Summary

Fields

Modifier and Type	Field	Description
static String	defaultFN
static String	defaultPath
static boolean	defaultUseXMLPath

Constructor Summary

Constructors

Constructor	Description
Save3dTIFF(String path)
Save3dTIFF(String path, boolean compress)

Method Summary

Modifier and Type	Method	Description
int[]	blocksize()	specify the desired 3d blocksize used for the Lazy instances
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> boolean	exportImage(net.imglib2.algorithm.blocks.BlockSupplier<T> img, net.imglib2.Interval bb, double downsampling, double anisoF, String title, Group<? extends mpicbg.spim.data.sequence.ViewDescription> fusionGroup)	Exports the image using a predefined min/max
boolean	finish()	Called last when the fusion is finished (e.g. to write the XML)
String	getDescription()
String	getFileName(String title)
double[]	getPixelSize()
String	getUnit()
ImgExport	newInstance()
boolean	queryParameters(FusionExportInterface fusion)
static boolean	saveTiffStack(ij.ImagePlus imp, String path)
void	setCalibration(double[] pixelSize, String unit)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

defaultUseXMLPath

public static boolean defaultUseXMLPath

defaultPath

public static String defaultPath

defaultFN

public static String defaultFN

Constructor Details

Save3dTIFF

public Save3dTIFF(String path)

Save3dTIFF

public Save3dTIFF(String path,
 boolean compress)

Method Details

getFileName

public String getFileName(String title)

exportImage

public <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>
boolean exportImage(net.imglib2.algorithm.blocks.BlockSupplier<T> img,
 net.imglib2.Interval bb,
 double downsampling,
 double anisoF,
 String title,
 Group<? extends mpicbg.spim.data.sequence.ViewDescription> fusionGroup)

Description copied from interface: ImgExport

Exports the image using a predefined min/max

Specified by:

exportImage in interface ImgExport

Type Parameters:

T - pixel type

Parameters:

img - - Note, in rare cases this can be null (i.e. do nothing)

bb - - the bounding box used to fuse this image

downsampling - - how much it was downsampled (or NaN if not)

anisoF - - how much the z-dimension was scaled (or NaN if not)

title - - the name of the image

fusionGroup - - which views are part of this fusion

Returns:

success? true or false

saveTiffStack

public static boolean saveTiffStack(ij.ImagePlus imp,
 String path)

queryParameters

public boolean queryParameters(FusionExportInterface fusion)

Specified by:

queryParameters in interface ImgExport

newInstance

public ImgExport newInstance()

Specified by:

newInstance in interface ImgExport

getDescription

public String getDescription()

Specified by:

getDescription in interface ImgExport

Returns:

- to be displayed in the generic dialog

finish

public boolean finish()

Description copied from interface: ImgExport

Called last when the fusion is finished (e.g. to write the XML)

Specified by:

finish in interface ImgExport

Returns:

- true if the spimdata was modified, otherwise false

setCalibration

public void setCalibration(double[] pixelSize,
 String unit)

Specified by:

setCalibration in interface Calibrateable

getUnit

public String getUnit()

Specified by:

getUnit in interface Calibrateable

getPixelSize

public double[] getPixelSize()

Specified by:

getPixelSize in interface Calibrateable

blocksize

public int[] blocksize()

Description copied from interface: ImgExport

specify the desired 3d blocksize used for the Lazy instances

Specified by:

blocksize in interface ImgExport

Returns:

- the desired 3d blocksize