Package net.preibisch.mvrecon.fiji.plugin.fusion

Class QualityGUI

java.lang.Object

net.preibisch.mvrecon.fiji.plugin.fusion.QualityGUI

All Implemented Interfaces:

FusionExportInterface

public class QualityGUI
extends Object
implements FusionExportInterface

Field Summary

Fields

Modifier and Type	Field	Description
protected double	avgAnisoF
protected int	boundingBox
static int	defaultBB
static double	defaultDownsampling
static int	defaultFFTSize
static int	defaultFRCStepSize
static int	defaultImgExportAlgorithm
static boolean	defaultPreserveAnisotropy
static int	defaultSplittingType
static boolean	defaultUseRelativeFRC
protected double	downsampling
protected int	fftSize
protected int	frcStepSize
protected int	imgExport
static final String[]	imgExportDescriptions
protected boolean	preserveAnisotropy
protected final SpimData2	spimData
protected int	splittingType
static String[]	splittingTypes
static final ArrayList<ImgExport>	staticImgExportAlgorithms
protected boolean	useRelativeFRC

Constructor Summary

Constructors

Constructor	Description
QualityGUI(SpimData2 spimData, List<mpicbg.spim.data.sequence.ViewId> views)

Method Summary

Modifier and Type	Method	Description
double	getAnisotropyFactor()
net.imglib2.Interval	getBoundingBox()
net.imglib2.Interval	getDownsampledBoundingBox()
double	getDownsampling()
int	getFFTSize()
int	getFRCStepSize()
List<Group<mpicbg.spim.data.sequence.ViewDescription>>	getFusionGroups()
ImgExport	getNewExporterInstance()
int	getPixelType()	0 == "32-bit floating point", 1 == "16-bit unsigned integer"
SpimData2	getSpimData()
int	getSplittingType()	0 == "Each timepoint & channel", 1 == "Each timepoint, channel & illumination", 2 == "All views together", 3 == "Each view"
boolean	getUseRelativeFRC()
List<mpicbg.spim.data.sequence.ViewId>	getViews()
boolean	isImgLoaderVirtual()
boolean	isMultiResolution()
boolean	queryDetails()
void	setBoundingBox(net.imglib2.Interval bb)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

defaultDownsampling

public static double defaultDownsampling

defaultBB

public static int defaultBB

defaultUseRelativeFRC

public static boolean defaultUseRelativeFRC

defaultFFTSize

public static int defaultFFTSize

defaultFRCStepSize

public static int defaultFRCStepSize

splittingTypes

public static String[] splittingTypes

defaultSplittingType

public static int defaultSplittingType

defaultPreserveAnisotropy

public static boolean defaultPreserveAnisotropy

staticImgExportAlgorithms

public static final ArrayList<ImgExport> staticImgExportAlgorithms

imgExportDescriptions

public static final String[] imgExportDescriptions

defaultImgExportAlgorithm

public static int defaultImgExportAlgorithm

boundingBox

protected int boundingBox

splittingType

protected int splittingType

downsampling

protected double downsampling

preserveAnisotropy

protected boolean preserveAnisotropy

avgAnisoF

protected double avgAnisoF

useRelativeFRC

protected boolean useRelativeFRC

fftSize

protected int fftSize

frcStepSize

protected int frcStepSize

imgExport

protected int imgExport

spimData

protected final SpimData2 spimData

Constructor Details

QualityGUI

public QualityGUI(SpimData2 spimData,
 List<mpicbg.spim.data.sequence.ViewId> views)

Method Details

getSpimData

public SpimData2 getSpimData()

Specified by:

getSpimData in interface FusionExportInterface

getViews

public List<mpicbg.spim.data.sequence.ViewId> getViews()

Specified by:

getViews in interface FusionExportInterface

getBoundingBox

public net.imglib2.Interval getBoundingBox()

setBoundingBox

public void setBoundingBox(net.imglib2.Interval bb)

getDownsampledBoundingBox

public net.imglib2.Interval getDownsampledBoundingBox()

Specified by:

getDownsampledBoundingBox in interface FusionExportInterface

getPixelType

public int getPixelType()

Description copied from interface: FusionExportInterface

0 == "32-bit floating point", 1 == "16-bit unsigned integer"

Specified by:

getPixelType in interface FusionExportInterface

Returns:

the pixel type

getDownsampling

public double getDownsampling()

Specified by:

getDownsampling in interface FusionExportInterface

Returns:

the downsampling used for the fusion, or Double.NaN if no downsampling

getAnisotropyFactor

public double getAnisotropyFactor()

Specified by:

getAnisotropyFactor in interface FusionExportInterface

Returns:

the average anisotropy factor in z of all views used to "flatten" the fused image, or Double.NaN if no change

getUseRelativeFRC

public boolean getUseRelativeFRC()

getFFTSize

public int getFFTSize()

getFRCStepSize

public int getFRCStepSize()

getSplittingType

public int getSplittingType()

Description copied from interface: FusionExportInterface

0 == "Each timepoint & channel", 1 == "Each timepoint, channel & illumination", 2 == "All views together", 3 == "Each view"

Specified by:

getSplittingType in interface FusionExportInterface

Returns:

- how the views that are processed are split up

getNewExporterInstance

public ImgExport getNewExporterInstance()

Specified by:

getNewExporterInstance in interface FusionExportInterface

Returns:

- creates a new instance of the exporter object

queryDetails

public boolean queryDetails()

isImgLoaderVirtual

public boolean isImgLoaderVirtual()

isMultiResolution

public boolean isMultiResolution()

getFusionGroups

public List<Group<mpicbg.spim.data.sequence.ViewDescription>> getFusionGroups()

Specified by:

getFusionGroups in interface FusionExportInterface