Package net.preibisch.mvrecon.process.interestpointregistration.global.pointmatchcreating.strong

Class InterestPointMatchCreator

java.lang.Object

net.preibisch.mvrecon.process.interestpointregistration.global.pointmatchcreating.strong.InterestPointMatchCreator

All Implemented Interfaces:

PointMatchCreator

public class InterestPointMatchCreator
extends Object
implements PointMatchCreator

Field Summary

Fields

Modifier and Type	Field	Description
static int	maxPerPairLog	Maximum number of per-pair "Connecting … <-> …" lines to print from assignPointMatches(java.util.HashMap<mpicbg.spim.data.sequence.ViewId, mpicbg.models.Tile<M>>, java.util.ArrayList<net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping.Group<mpicbg.spim.data.sequence.ViewId>>, java.util.Collection<mpicbg.spim.data.sequence.ViewId>) before the per-pair output is suppressed.

Constructor Summary

Constructors

Constructor	Description
InterestPointMatchCreator(List<? extends net.imglib2.util.Pair<? extends net.imglib2.util.Pair<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.sequence.ViewId>,? extends PairwiseResult<?>>> pairs, Map<mpicbg.spim.data.sequence.ViewId,? extends Map<String,Double>> labelMap)

Method Summary

Modifier and Type	Method	Description
<M extends mpicbg.models.Model<M>> void	assignPointMatches(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> tileMap, ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews)	assign pointmatches for all views that this object knows and that are present in tileMap.keySet(), which comes from getAllViews() plus what is in the group definition of the globalopt called last
<M extends mpicbg.models.Model<M>> void	assignWeights(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> tileMap, ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews)	By default all weights are 1, if wanted one can adjust them here, otherwise simply return.
static <M extends mpicbg.models.Model<M>> void	assignWeights(List<? extends net.imglib2.util.Pair<? extends net.imglib2.util.Pair<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.sequence.ViewId>,? extends PairwiseResult<?>>> pairs, ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups, HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> tileMap)
HashSet<mpicbg.spim.data.sequence.ViewId>	getAllViews()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

maxPerPairLog

public static int maxPerPairLog

Maximum number of per-pair "Connecting … <-> …" lines to print from assignPointMatches(java.util.HashMap<mpicbg.spim.data.sequence.ViewId, mpicbg.models.Tile<M>>, java.util.ArrayList<net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping.Group<mpicbg.spim.data.sequence.ViewId>>, java.util.Collection<mpicbg.spim.data.sequence.ViewId>) before the per-pair output is suppressed. Set to Integer.MAX_VALUE to print everything (legacy behavior). The end-of-run summary (per-(labelA,labelB) pair-count + min/avg/max correspondences) is always emitted regardless of this threshold.

Constructor Details

InterestPointMatchCreator

public InterestPointMatchCreator(List<? extends net.imglib2.util.Pair<? extends net.imglib2.util.Pair<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.sequence.ViewId>,? extends PairwiseResult<?>>> pairs,
 Map<mpicbg.spim.data.sequence.ViewId,? extends Map<String,Double>> labelMap)

Method Details

getAllViews

public HashSet<mpicbg.spim.data.sequence.ViewId> getAllViews()

Specified by:

getAllViews in interface PointMatchCreator

Returns:

- all views that this class knows and that are part of the global opt, called first

assignPointMatches

public <M extends mpicbg.models.Model<M>> void assignPointMatches(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> tileMap,
 ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups,
 Collection<mpicbg.spim.data.sequence.ViewId> fixedViews)

Description copied from interface: PointMatchCreator

assign pointmatches for all views that this object knows and that are present in tileMap.keySet(), which comes from getAllViews() plus what is in the group definition of the globalopt called last

Specified by:

assignPointMatches in interface PointMatchCreator

Type Parameters:

M - model type

Parameters:

tileMap - - the map from viewId to Tile

groups - - which groups exist (one might need it?)

fixedViews - - which views are fixed (one might need it?)

assignWeights

public <M extends mpicbg.models.Model<M>> void assignWeights(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> tileMap,
 ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups,
 Collection<mpicbg.spim.data.sequence.ViewId> fixedViews)

Description copied from interface: PointMatchCreator

By default all weights are 1, if wanted one can adjust them here, otherwise simply return. The idea is to modify the weights in the PointMatchGeneric objects, that are later on just added called second

Specified by:

assignWeights in interface PointMatchCreator

Type Parameters:

M - model type

Parameters:

tileMap - - the map from viewId to Tile

groups - - which groups exist

fixedViews - - which views are fixed (one might need it?)

assignWeights

public static <M extends mpicbg.models.Model<M>>
void assignWeights(List<? extends net.imglib2.util.Pair<? extends net.imglib2.util.Pair<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.sequence.ViewId>,? extends PairwiseResult<?>>> pairs,
 ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups,
 HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> tileMap)