Package net.preibisch.mvrecon.process.interestpointregistration.global.pointmatchcreating.weak

Class MetaDataWeakLinkCreator<N extends mpicbg.models.Model<N>>

java.lang.Object

net.preibisch.mvrecon.process.interestpointregistration.global.pointmatchcreating.weak.WeakLinkPointMatchCreator<N>

net.preibisch.mvrecon.process.interestpointregistration.global.pointmatchcreating.weak.MetaDataWeakLinkCreator<N>

All Implemented Interfaces:

PointMatchCreator

public class MetaDataWeakLinkCreator<N extends mpicbg.models.Model<N>>
extends WeakLinkPointMatchCreator<N>

Uses the previous state as an approximate knowledge for the metadata of the acquisition. New Groups (connected through strong links) will be transformed together, and are mapped back in average to their positions before the global opt run that aligned them relative to each other.

Constructor Summary

Constructors

Constructor	Description
MetaDataWeakLinkCreator(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<N>> models1, OverlapDetection<mpicbg.spim.data.sequence.ViewId> overlapDetection, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> viewRegistrations)

Method Summary

Modifier and Type	Method	Description
<M extends mpicbg.models.Model<M>> void	assignPointMatches(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> models2, ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews)	assign pointmatches for all views that this object knows and that are present in tileMap.keySet(), which comes from getAllViews() plus what is in the group definition of the globalopt called last
<M extends mpicbg.models.Model<M>> void	assignWeights(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> tileMap, ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews)	By default all weights are 1, if wanted one can adjust them here, otherwise simply return.

Methods inherited from class net.preibisch.mvrecon.process.interestpointregistration.global.pointmatchcreating.weak.WeakLinkPointMatchCreator

getAllViews

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

MetaDataWeakLinkCreator

public MetaDataWeakLinkCreator(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<N>> models1,
 OverlapDetection<mpicbg.spim.data.sequence.ViewId> overlapDetection,
 Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> viewRegistrations)

Parameters:

models1 - - the models from the first round of global optimization

overlapDetection - - an interface implementation to identify which views overlap

viewRegistrations - - the Registrations that are the basis for the whole global optimization (MetaData)

Method Details

assignPointMatches

public <M extends mpicbg.models.Model<M>> void assignPointMatches(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> models2,
 ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups,
 Collection<mpicbg.spim.data.sequence.ViewId> fixedViews)

Description copied from interface: PointMatchCreator

assign pointmatches for all views that this object knows and that are present in tileMap.keySet(), which comes from getAllViews() plus what is in the group definition of the globalopt called last

Type Parameters:

M - model type

Parameters:

models2 - - the map from viewId to Tile

groups - - which groups exist (one might need it?)

fixedViews - - which views are fixed (one might need it?)

assignWeights

public <M extends mpicbg.models.Model<M>> void assignWeights(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> tileMap,
 ArrayList<Group<mpicbg.spim.data.sequence.ViewId>> groups,
 Collection<mpicbg.spim.data.sequence.ViewId> fixedViews)

Description copied from interface: PointMatchCreator

By default all weights are 1, if wanted one can adjust them here, otherwise simply return. The idea is to modify the weights in the PointMatchGeneric objects, that are later on just added called second

Type Parameters:

M - model type

Parameters:

tileMap - - the map from viewId to Tile

groups - - which groups exist

fixedViews - - which views are fixed (one might need it?)