Package net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation

Class ReferenceTimepoint

java.lang.Object

net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.PairwiseSetup<mpicbg.spim.data.sequence.ViewId>

net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.AllToAllRange<mpicbg.spim.data.sequence.ViewId,ReferenceTimepointRange<mpicbg.spim.data.sequence.ViewId>>

net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.ReferenceTimepoint

public class ReferenceTimepoint
extends AllToAllRange<mpicbg.spim.data.sequence.ViewId,ReferenceTimepointRange<mpicbg.spim.data.sequence.ViewId>>

Field Summary

Fields inherited from class net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.PairwiseSetup

groups, pairs, subsets, views

Constructor Summary

Constructors

Constructor	Description
ReferenceTimepoint(List<mpicbg.spim.data.sequence.ViewId> views, Set<Group<mpicbg.spim.data.sequence.ViewId>> groups, int referenceTimepointId)
ReferenceTimepoint(List<mpicbg.spim.data.sequence.ViewId> views, Set<Group<mpicbg.spim.data.sequence.ViewId>> groups, mpicbg.spim.data.sequence.TimePoint referenceTimepoint)

Method Summary

Modifier and Type	Method	Description
void	detectSubsets()	Given a list of pairs of views that need to be compared, find subsets that are not overlapping
ArrayList<mpicbg.spim.data.sequence.ViewId>	getDefaultFixedViews()	Get a list of fixed views necessary for the specific strategy to work
static <V extends mpicbg.spim.data.sequence.ViewId> boolean	groupsSpanTimepoints(Set<Group<V>> groups)	Checks if groups exist than span multiple timepoints
static <V extends mpicbg.spim.data.sequence.ViewId> boolean	pairsSpanTimepoints(List<net.imglib2.util.Pair<V,V>> pairs, int referenceTimepointId)	Tests if pairs span over different timepoints (that are not the reference timepoint)

Methods inherited from class net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.AllToAllRange

allPairs, definePairsAbstract

Methods inherited from class net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.PairwiseSetup

definePairs, detectSubsets, findGroupsAssociatedWithSubset, fixViewsInAllSubsets, getGroups, getPairs, getSubsets, getViews, main, mergeSets, mergeSets, removeNonExistentViewsInGroups, removeNonOverlappingPairs, removeNonOverlappingPairs, removeRedundantPairs, reorderPairs, reorderPairs, setId, setPairs, sortSets, sortSubsets, subsetsLinkedByGroup

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ReferenceTimepoint

public ReferenceTimepoint(List<mpicbg.spim.data.sequence.ViewId> views,
 Set<Group<mpicbg.spim.data.sequence.ViewId>> groups,
 int referenceTimepointId)

ReferenceTimepoint

public ReferenceTimepoint(List<mpicbg.spim.data.sequence.ViewId> views,
 Set<Group<mpicbg.spim.data.sequence.ViewId>> groups,
 mpicbg.spim.data.sequence.TimePoint referenceTimepoint)

Method Details

detectSubsets

public void detectSubsets()

Given a list of pairs of views that need to be compared, find subsets that are not overlapping

Overrides:

detectSubsets in class PairwiseSetup<mpicbg.spim.data.sequence.ViewId>

getDefaultFixedViews

public ArrayList<mpicbg.spim.data.sequence.ViewId> getDefaultFixedViews()

Description copied from class: PairwiseSetup

Get a list of fixed views necessary for the specific strategy to work

Overrides:

getDefaultFixedViews in class AllToAllRange<mpicbg.spim.data.sequence.ViewId,ReferenceTimepointRange<mpicbg.spim.data.sequence.ViewId>>

Returns:

list of default fixed views

pairsSpanTimepoints

public static <V extends mpicbg.spim.data.sequence.ViewId>
boolean pairsSpanTimepoints(List<net.imglib2.util.Pair<V,V>> pairs,
 int referenceTimepointId)

Tests if pairs span over different timepoints (that are not the reference timepoint)

Type Parameters:

V - view id type

Parameters:

pairs - list if view pairs

referenceTimepointId - reference timepoint id

Returns:

test result

groupsSpanTimepoints

public static <V extends mpicbg.spim.data.sequence.ViewId>
boolean groupsSpanTimepoints(Set<Group<V>> groups)

Checks if groups exist than span multiple timepoints

Type Parameters:

V - view id type

Parameters:

groups - the view groups

Returns:

test result