Package net.preibisch.mvrecon.process.export

Class OpenSeaDragon

java.lang.Object

net.preibisch.mvrecon.process.export.OpenSeaDragon

All Implemented Interfaces:

ImgExport

public class OpenSeaDragon
extends Object
implements ImgExport

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	OpenSeaDragon.OpenSeaDragonImgLib2

Field Summary

Fields

Modifier and Type	Field	Description
static int	defaultChoiceB
static int	defaultChoiceG
static int	defaultChoiceR
static String	defaultDataset
static int	defaultFormat
static String	defaultPath
static int	defaultTileOverlap
static int	defaultTileSize

Constructor Summary

Constructors

Constructor	Description
OpenSeaDragon()

Method Summary

Modifier and Type	Method	Description
int[]	blocksize()	specify the desired 3d blocksize used for the Lazy instances
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> boolean	exportImage(net.imglib2.algorithm.blocks.BlockSupplier<T> supplier, net.imglib2.Interval bb, double downsampling, double anisoF, String title, Group<? extends mpicbg.spim.data.sequence.ViewDescription> fusionGroup)	Exports the image using a predefined min/max
boolean	finish()	Called last when the fusion is finished (e.g. to write the XML)
String	getDescription()
protected static String	getNameForFusionGroup(Group<mpicbg.spim.data.sequence.ViewDescription> group, int splittingType)
ImgExport	newInstance()
boolean	queryParameters(FusionExportInterface fusion)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

defaultPath

public static String defaultPath

defaultDataset

public static String defaultDataset

defaultChoiceR

public static int defaultChoiceR

defaultChoiceG

public static int defaultChoiceG

defaultChoiceB

public static int defaultChoiceB

defaultFormat

public static int defaultFormat

defaultTileSize

public static int defaultTileSize

defaultTileOverlap

public static int defaultTileOverlap

Constructor Details

OpenSeaDragon

public OpenSeaDragon()

Method Details

newInstance

public ImgExport newInstance()

Specified by:

newInstance in interface ImgExport

getDescription

public String getDescription()

Specified by:

getDescription in interface ImgExport

Returns:

- to be displayed in the generic dialog

blocksize

public int[] blocksize()

Description copied from interface: ImgExport

specify the desired 3d blocksize used for the Lazy instances

Specified by:

blocksize in interface ImgExport

Returns:

- the desired 3d blocksize

finish

public boolean finish()

Description copied from interface: ImgExport

Called last when the fusion is finished (e.g. to write the XML)

Specified by:

finish in interface ImgExport

Returns:

- true if the spimdata was modified, otherwise false

exportImage

public <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>
boolean exportImage(net.imglib2.algorithm.blocks.BlockSupplier<T> supplier,
 net.imglib2.Interval bb,
 double downsampling,
 double anisoF,
 String title,
 Group<? extends mpicbg.spim.data.sequence.ViewDescription> fusionGroup)

Description copied from interface: ImgExport

Exports the image using a predefined min/max

Specified by:

exportImage in interface ImgExport

Type Parameters:

T - pixel type

Parameters:

supplier - - Note, in rare cases this can be null (i.e. do nothing)

bb - - the bounding box used to fuse this image

downsampling - - how much it was downsampled (or NaN if not)

anisoF - - how much the z-dimension was scaled (or NaN if not)

title - - the name of the image

fusionGroup - - which views are part of this fusion

Returns:

success? true or false

queryParameters

public boolean queryParameters(FusionExportInterface fusion)

Specified by:

queryParameters in interface ImgExport

getNameForFusionGroup

protected static String getNameForFusionGroup(Group<mpicbg.spim.data.sequence.ViewDescription> group,
 int splittingType)