Package net.preibisch.mvrecon.process.interestpointregistration.global

Class GlobalOpt

java.lang.Object

net.preibisch.mvrecon.process.interestpointregistration.global.GlobalOpt

public class GlobalOpt
extends Object

Author:

Stephan Preibisch (stephan.preibisch@gmx.de)

Constructor Summary

Constructors

Constructor	Description
GlobalOpt()

Method Summary

Modifier and Type	Method	Description
protected static <M extends mpicbg.models.Model<M>> mpicbg.models.TileConfiguration	addAndFixTiles(Collection<mpicbg.spim.data.sequence.ViewId> views, HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> map, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews, Collection<? extends Group<mpicbg.spim.data.sequence.ViewId>> groups)
protected static <M extends mpicbg.models.Model<M>> HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>>	assignViewsToTiles(M model, List<mpicbg.spim.data.sequence.ViewId> views, List<Group<mpicbg.spim.data.sequence.ViewId>> groups)
static <M extends mpicbg.models.Model<M>> HashMap<mpicbg.spim.data.sequence.ViewId,M>	computeModels(M model, boolean preAlign, PointMatchCreator pmc, ConvergenceStrategy cs, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews, Collection<Group<mpicbg.spim.data.sequence.ViewId>> groupsIn)
static <M extends mpicbg.models.Model<M>> HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>>	computeTiles(M model, boolean preAlign, PointMatchCreator pmc, ConvergenceStrategy cs, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews, Collection<Group<mpicbg.spim.data.sequence.ViewId>> groupsIn)
static <M extends mpicbg.models.Model<M>> net.imglib2.util.Pair<HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>>,ArrayList<Group<mpicbg.spim.data.sequence.ViewId>>>	initGlobalOpt(M model, PointMatchCreator pmc, Collection<mpicbg.spim.data.sequence.ViewId> fixedViews, Collection<Group<mpicbg.spim.data.sequence.ViewId>> groupsIn)
static void	main(String[] args)
static <M extends mpicbg.models.Model<M>> HashMap<mpicbg.spim.data.sequence.ViewId,M>	toModels(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> map)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

GlobalOpt

public GlobalOpt()

Method Details

computeModels

public static <M extends mpicbg.models.Model<M>>
HashMap<mpicbg.spim.data.sequence.ViewId,M> computeModels(M model,
 boolean preAlign,
 PointMatchCreator pmc,
 ConvergenceStrategy cs,
 Collection<mpicbg.spim.data.sequence.ViewId> fixedViews,
 Collection<Group<mpicbg.spim.data.sequence.ViewId>> groupsIn)

computeTiles

public static <M extends mpicbg.models.Model<M>>
HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> computeTiles(M model,
 boolean preAlign,
 PointMatchCreator pmc,
 ConvergenceStrategy cs,
 Collection<mpicbg.spim.data.sequence.ViewId> fixedViews,
 Collection<Group<mpicbg.spim.data.sequence.ViewId>> groupsIn)

initGlobalOpt

public static <M extends mpicbg.models.Model<M>>
net.imglib2.util.Pair<HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>>,ArrayList<Group<mpicbg.spim.data.sequence.ViewId>>> initGlobalOpt(M model,
 PointMatchCreator pmc,
 Collection<mpicbg.spim.data.sequence.ViewId> fixedViews,
 Collection<Group<mpicbg.spim.data.sequence.ViewId>> groupsIn)

addAndFixTiles

protected static <M extends mpicbg.models.Model<M>>
mpicbg.models.TileConfiguration addAndFixTiles(Collection<mpicbg.spim.data.sequence.ViewId> views,
 HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> map,
 Collection<mpicbg.spim.data.sequence.ViewId> fixedViews,
 Collection<? extends Group<mpicbg.spim.data.sequence.ViewId>> groups)

assignViewsToTiles

protected static <M extends mpicbg.models.Model<M>>
HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> assignViewsToTiles(M model,
 List<mpicbg.spim.data.sequence.ViewId> views,
 List<Group<mpicbg.spim.data.sequence.ViewId>> groups)

toModels

public static <M extends mpicbg.models.Model<M>>
HashMap<mpicbg.spim.data.sequence.ViewId,M> toModels(HashMap<mpicbg.spim.data.sequence.ViewId,mpicbg.models.Tile<M>> map)

main

public static void main(String[] args)