Package net.preibisch.mvrecon.process.export

Class DisplayImage

java.lang.Object

net.preibisch.mvrecon.process.export.DisplayImage

All Implemented Interfaces:

Calibrateable, ImgExport

public class DisplayImage
extends Object
implements ImgExport, Calibrateable

Field Summary

Fields

Modifier and Type	Field	Description
static int	defaultBlocksizePrecomputeX
static int	defaultBlocksizePrecomputeY
static int	defaultBlocksizePrecomputeZ
static int	defaultBlocksizeVirtualX
static int	defaultBlocksizeVirtualY
static int	defaultBlocksizeVirtualZ
static int	defaultChoice
static int	defaultMaxIntensity
static int	defaultMinIntensity
static final ExecutorService	service

Constructor Summary

Constructors

Constructor	Description
DisplayImage()
DisplayImage(boolean virtualDisplay)

Method Summary

Modifier and Type	Method	Description
int[]	blocksize()	specify the desired 3d blocksize used for the Lazy instances
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> boolean	exportImage(net.imglib2.algorithm.blocks.BlockSupplier<T> img, net.imglib2.Interval bb, double downsampling, double anisoF, String title, Group<? extends mpicbg.spim.data.sequence.ViewDescription> fusionGroup)	Exports the image using a predefined min/max
boolean	finish()	Called last when the fusion is finished (e.g. to write the XML)
String	getDescription()
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> ij.ImagePlus	getImagePlusInstance(net.imglib2.algorithm.blocks.BlockSupplier<T> supplier, net.imglib2.Interval interval, int[] blockSize, boolean virtualDisplay, String title, double min, double max, ExecutorService service)
double[]	getPixelSize()
String	getUnit()
ImgExport	newInstance()
boolean	queryParameters(FusionExportInterface fusion)
void	setCalibration(double[] pixelSize, String unit)
static void	setCalibration(ij.ImagePlus imp, net.imglib2.Interval bb, double downsampling, double anisoF, double[] cal, String unit)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

service

public static final ExecutorService service

defaultChoice

public static int defaultChoice

defaultBlocksizeVirtualX

public static int defaultBlocksizeVirtualX

defaultBlocksizeVirtualY

public static int defaultBlocksizeVirtualY

defaultBlocksizeVirtualZ

public static int defaultBlocksizeVirtualZ

defaultBlocksizePrecomputeX

public static int defaultBlocksizePrecomputeX

defaultBlocksizePrecomputeY

public static int defaultBlocksizePrecomputeY

defaultBlocksizePrecomputeZ

public static int defaultBlocksizePrecomputeZ

defaultMinIntensity

public static int defaultMinIntensity

defaultMaxIntensity

public static int defaultMaxIntensity

Constructor Details

DisplayImage

public DisplayImage()

DisplayImage

public DisplayImage(boolean virtualDisplay)

Method Details

exportImage

public <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>
boolean exportImage(net.imglib2.algorithm.blocks.BlockSupplier<T> img,
 net.imglib2.Interval bb,
 double downsampling,
 double anisoF,
 String title,
 Group<? extends mpicbg.spim.data.sequence.ViewDescription> fusionGroup)

Description copied from interface: ImgExport

Exports the image using a predefined min/max

Specified by:

exportImage in interface ImgExport

Type Parameters:

T - pixel type

Parameters:

img - - Note, in rare cases this can be null (i.e. do nothing)

bb - - the bounding box used to fuse this image

downsampling - - how much it was downsampled (or NaN if not)

anisoF - - how much the z-dimension was scaled (or NaN if not)

title - - the name of the image

fusionGroup - - which views are part of this fusion

Returns:

success? true or false

setCalibration

public static void setCalibration(ij.ImagePlus imp,
 net.imglib2.Interval bb,
 double downsampling,
 double anisoF,
 double[] cal,
 String unit)

getImagePlusInstance

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>
ij.ImagePlus getImagePlusInstance(net.imglib2.algorithm.blocks.BlockSupplier<T> supplier,
 net.imglib2.Interval interval,
 int[] blockSize,
 boolean virtualDisplay,
 String title,
 double min,
 double max,
 ExecutorService service)

queryParameters

public boolean queryParameters(FusionExportInterface fusion)

Specified by:

queryParameters in interface ImgExport

newInstance

public ImgExport newInstance()

Specified by:

newInstance in interface ImgExport

getDescription

public String getDescription()

Specified by:

getDescription in interface ImgExport

Returns:

- to be displayed in the generic dialog

finish

public boolean finish()

Description copied from interface: ImgExport

Called last when the fusion is finished (e.g. to write the XML)

Specified by:

finish in interface ImgExport

Returns:

- true if the spimdata was modified, otherwise false

setCalibration

public void setCalibration(double[] pixelSize,
 String unit)

Specified by:

setCalibration in interface Calibrateable

getUnit

public String getUnit()

Specified by:

getUnit in interface Calibrateable

getPixelSize

public double[] getPixelSize()

Specified by:

getPixelSize in interface Calibrateable

blocksize

public int[] blocksize()

Description copied from interface: ImgExport

specify the desired 3d blocksize used for the Lazy instances

Specified by:

blocksize in interface ImgExport

Returns:

- the desired 3d blocksize