Package net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation

Class Subset<V>

java.lang.Object

net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping.Group<V>

net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.Subset<V>

All Implemented Interfaces:

Serializable, Iterable<V>

public class Subset<V>
extends Group<V>

See Also:

• Serialized Form

Field Summary

Fields inherited from class net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping.Group

views

Constructor Summary

Constructors

Constructor	Description
Subset(Set<V> views, List<net.imglib2.util.Pair<V,V>> pairs, Set<Group<V>> groups)

Method Summary

Modifier and Type	Method	Description
static <V> ArrayList<Group<V>>	createGroupsForAllViews(Set<V> views, Set<Group<V>> groups)	Create a Set of groups that contains all views, with |group| >= 1.
static <V> HashSet<V>	filterPresentViews(Set<V> views, List<V> fixedViews)	Checks which fixed views are present in the views list and puts them into a HashMap
static <V> ArrayList<net.imglib2.util.Pair<V,V>>	fixViews(HashSet<V> fixedSubsetViews, List<net.imglib2.util.Pair<V,V>> pairs, Set<Group<V>> groups)
ArrayList<net.imglib2.util.Pair<V,V>>	fixViews(List<V> fixedViews)	Fix an additional list of views (removes pairs from subsets and sets list of fixed views)
Set<V>	getFixedViews()
List<net.imglib2.util.Pair<Group<V>,Group<V>>>	getGroupedPairs()	Computes a list of grouped views that need to be compared, expressed as pairs.
Set<Group<V>>	getGroups()
List<net.imglib2.util.Pair<V,V>>	getPairs()
protected void	setFixedViews(Set<V> fixedViews)

Methods inherited from class net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping.Group

combineBy, combineOrSplitBy, contains, containsBoth, equals, filterMissingViews, filterMissingViews, getGroupsSorted, getViews, getViewsSorted, groupByChannel, gvids, gvids, hashCode, isContained, iterator, main, memberOf, merge, mergeAllOverlappingGroups, mergeOverlapping, nextOverlappingGroup, overlappingGroups, overlaps, pvid, pvids, removeEmptyGroups, size, splitBy, toGroup, toGroups, toString, toViewIdGroup, toViewIdGroups

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Constructor Details

Subset

public Subset(Set<V> views,
 List<net.imglib2.util.Pair<V,V>> pairs,
 Set<Group<V>> groups)

Method Details

getPairs

public List<net.imglib2.util.Pair<V,V>> getPairs()

getGroups

public Set<Group<V>> getGroups()

getFixedViews

public Set<V> getFixedViews()

setFixedViews

protected void setFixedViews(Set<V> fixedViews)

fixViews

public ArrayList<net.imglib2.util.Pair<V,V>> fixViews(List<V> fixedViews)

Fix an additional list of views (removes pairs from subsets and sets list of fixed views)

Parameters:

fixedViews - - the fixed views

Returns:

- the removed pairs due to fixed views

getGroupedPairs

public List<net.imglib2.util.Pair<Group<V>,Group<V>>> getGroupedPairs()

Computes a list of grouped views that need to be compared, expressed as pairs. Single views are expressed as groups with cardinality 1. Then idea is that for pairwise comparisons, the algorithm groups views (e.g. all interestpoints) before running the actual algorithm.

Returns:

list of grouped views that need to be compared

createGroupsForAllViews

public static <V> ArrayList<Group<V>> createGroupsForAllViews(Set<V> views,
 Set<Group<V>> groups)

Create a Set of groups that contains all views, with |group| >= 1.

Type Parameters:

V - view id type

Parameters:

views - all views

groups - the groups

Returns:

set of groups

filterPresentViews

public static <V> HashSet<V> filterPresentViews(Set<V> views,
 List<V> fixedViews)

Checks which fixed views are present in the views list and puts them into a HashMap

Type Parameters:

V - view id type

Parameters:

views - all views to consider

fixedViews - input fixed views

Returns:

fixed views that area also in views

fixViews

public static <V>
ArrayList<net.imglib2.util.Pair<V,V>> fixViews(HashSet<V> fixedSubsetViews,
 List<net.imglib2.util.Pair<V,V>> pairs,
 Set<Group<V>> groups)