Uses of Interface bdv.viewer.Source (Fiji Javadocs 0-SNAPSHOT API)

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Packages that use Source
Package	Description
bdv
bdv.ij
bdv.img
bdv.tools
bdv.tools.boundingbox
bdv.tools.crop
bdv.tools.transformation
bdv.util
bdv.viewer
bdv.viewer.render
bdv.viewer.state
bigwarp
bigwarp.source

Uses of Source in bdv

Classes in bdv that implement Source
Modifier and Type	Class and Description
`class`	`AbstractSpimSource<T extends NumericType<T>>`
`class`	`SpimSource<T extends NumericType<T>>`
`class`	`VolatileSpimSource<V extends Volatile<?> & NumericType<V>>`

Uses of Source in bdv.ij

Methods in bdv.ij with parameters of type Source
Modifier and Type	Method and Description
`static Interval`	ApplyBigwarpPlugin.`getPixelInterval(Source<?> source, LandmarkTableModel landmarks, InvertibleRealTransform transform, String fieldOfViewOption, double[] outputResolution)`
`static double[]`	ApplyBigwarpPlugin.`getResolution(Source<?> source, String resolutionOption, double[] resolutionSpec)`
`static double[]`	ApplyBigwarpPlugin.`resolutionFromSource(Source<?> src)`

Uses of Source in bdv.img

Classes in bdv.img that implement Source
Modifier and Type	Class and Description
`class`	`BwRandomAccessibleIntervalSource<T extends NumericType<T>>` A `RandomAccessibleIntervalSource` with set-able `VoxelDimensions`.
`class`	`RenamableSource<T>`
`class`	`WarpedSource<T>`

Methods in bdv.img that return Source
Modifier and Type	Method and Description
`Source<T>`	WarpedSource.`getWrappedSource()`
`Source<T>`	RenamableSource.`getWrappedSource()`

Constructors in bdv.img with parameters of type Source
Constructor and Description
`RenamableSource(Source<T> src)`
`RenamableSource(Source<T> src, String name)`
`WarpedSource(Source<T> source, String name)`
`WarpedSource(Source<T> source, String name, Supplier<Boolean> doBoundingBoxCulling)`

Uses of Source in bdv.tools

Methods in bdv.tools with parameters of type Source
Modifier and Type	Method and Description
`static Bounds`	InitializeViewerState.`estimateSourceRange(Source<?> source, int timepoint, double cumulativeMinCutoff, double cumulativeMaxCutoff)`

Uses of Source in bdv.tools.boundingbox

Method parameters in bdv.tools.boundingbox with type arguments of type Source
Modifier and Type	Method and Description
`static Interval`	BoundingBoxUtil.`getSourcesBoundingBox(Collection<? extends Source<?>> sources, int minTimepointIndex, int maxTimepointIndex)`
`static RealInterval`	BoundingBoxUtil.`getSourcesBoundingBoxReal(Collection<? extends Source<?>> sources, int minTimepointIndex, int maxTimepointIndex)`

Uses of Source in bdv.tools.crop

Methods in bdv.tools.crop with parameters of type Source
Modifier and Type	Method and Description
`static <T> Pair<RandomAccessibleInterval<T>,AffineTransform3D>`	CropImgLoader.`crop(AffineTransform3D globalToCropTransform, RealInterval interval, Source<T> source, int timepoint)` Crop a region from a `Source`.

Constructors in bdv.tools.crop with parameters of type Source
Constructor and Description
`SetupImgLoader(Source<T> source)`

Constructor parameters in bdv.tools.crop with type arguments of type Source
Constructor and Description
`CropImgLoader(ArrayList<Source<?>> sources, AffineTransform3D globalToCropTransform, RealInterval cropInterval, Map<Integer,Integer> timepointIdToTimepointIndex, Map<Integer,Integer> setupIdToSourceIndex)`

Uses of Source in bdv.tools.transformation

Classes in bdv.tools.transformation that implement Source
Modifier and Type	Class and Description
`class`	`TransformedSource<T>` A `Source` that wraps another `Source` and allows to decorate it with an extra `AffineTransform3D`.

Fields in bdv.tools.transformation declared as Source
Modifier and Type	Field and Description
`protected Source<T>`	TransformedSource.`source`

Methods in bdv.tools.transformation that return Source
Modifier and Type	Method and Description
`Source<T>`	TransformedSource.`getWrappedSource()`

Constructors in bdv.tools.transformation with parameters of type Source
Constructor and Description
`TransformedSource(Source<T> source)` Instantiates a new `TransformedSource` wrapping the specified source with the identity transform.
`TransformedSource(Source<T> source, TransformedSource<?> shareTransform)`

Uses of Source in bdv.util

Classes in bdv.util that implement Source
Modifier and Type	Class and Description
`class`	`AbstractSource<T extends NumericType<T>>`
`class`	`PlaceHolderSource` A dummy `Source` that represents a `BdvOverlay`.
`class`	`RandomAccessibleIntervalMipmapSource<T extends NumericType<T>>`
`class`	`RandomAccessibleIntervalSource<T extends NumericType<T>>`
`class`	`RandomAccessibleIntervalSource4D<T extends NumericType<T>>`
`class`	`RandomAccessibleSource<T extends NumericType<T>>`
`class`	`RandomAccessibleSource4D<T extends NumericType<T>>`
`class`	`RealRandomAccessibleIntervalSource<T extends Type<T>>`
`class`	`RealRandomAccessibleSource<T extends Type<T>>` A `Source` wrapping some `RealRandomAccessible`.
`class`	`VolatileRandomAccessibleIntervalMipmapSource<T extends NumericType<T>,V extends Volatile<T> & NumericType<V>>`

Methods in bdv.util with parameters of type Source
Modifier and Type	Method and Description
`static int`	MipmapTransforms.`getBestMipMapLevel(AffineTransform3D screenTransform, Source<?> source, int timepoint)` Get the mipmap level that best matches the given screen scale for the given source.
`static double[]`	MipmapTransforms.`getPixelSourceSize(AffineTransform3D screenTransform, Source<?> source, int timepoint, int mipmapIndex)` Compute the size of the backprojected screen pixel in the `Source` space.
`static double`	MipmapTransforms.`getVoxelScreenSize(AffineTransform3D screenTransform, Source<?> source, int timepoint, int mipmapIndex)` Compute the projected voxel size at the given screen transform and mipmap level of a `Source`.
`static <T> BdvStackSource<T>`	BdvFunctions.`show(Source<T> source)`
`static <T> BdvStackSource<T>`	BdvFunctions.`show(Source<T> source, BdvOptions options)`
`static <T> BdvStackSource<T>`	BdvFunctions.`show(Source<T> source, int numTimePoints)`
`static <T> BdvStackSource<T>`	BdvFunctions.`show(Source<T> source, int numTimePoints, BdvOptions options)`

Uses of Source in bdv.viewer

Fields in bdv.viewer declared as Source
Modifier and Type	Field and Description
`protected Source<T>`	SourceAndConverter.`spimSource` provides image data for all timepoints of one view.

Methods in bdv.viewer that return Source
Modifier and Type	Method and Description
`Source<T>`	SourceAndConverter.`getSpimSource()` Get the `Source` (provides image data for all timepoints of one angle).

Methods in bdv.viewer with parameters of type Source
Modifier and Type	Method and Description
`void`	ViewerPanel.`removeSource(Source<?> source)` Deprecated. Modify `ViewerPanel.state()` directly
`void`	VisibilityAndGrouping.`setCurrentSource(Source<?> source)` Deprecated.
`void`	VisibilityAndGrouping.`setSourceActive(Source<?> source, boolean isActive)` Deprecated.

Method parameters in bdv.viewer with type arguments of type Source
Modifier and Type	Method and Description
`void`	ViewerPanel.`removeSources(Collection<Source<?>> sources)` Deprecated. Modify `ViewerPanel.state()` directly

Constructors in bdv.viewer with parameters of type Source
Constructor and Description
`SourceAndConverter(Source<T> spimSource, Converter<T,ARGBType> converter)`
`SourceAndConverter(Source<T> spimSource, Converter<T,ARGBType> converter, SourceAndConverter<? extends Volatile<T>> volatileSourceAndConverter)`

Uses of Source in bdv.viewer.render

Method parameters in bdv.viewer.render with type arguments of type Source
Modifier and Type	Method and Description
`default VolatileProjector`	AccumulateProjectorFactory.`createAccumulateProjector(ArrayList<VolatileProjector> sourceProjectors, ArrayList<Source<?>> sources, ArrayList<? extends RandomAccessible<? extends A>> sourceScreenImages, RandomAccessibleInterval<A> targetScreenImage, int numThreads, ExecutorService executorService)` Deprecated. Use `AccumulateProjectorFactory.createProjector(List, List, List, RandomAccessibleInterval, int, ExecutorService)` instead.

Constructors in bdv.viewer.render with parameters of type Source
Constructor and Description
`DefaultMipmapOrdering(Source<?> source)`
`DefaultMipmapOrdering(Source<?> source, boolean createHints, LoadingStrategy renderLoadingStrategy, boolean renderEnqueuToFront, LoadingStrategy prefetchLoadingStrategy, boolean prefetchEnqueuToFront)`

Uses of Source in bdv.viewer.state

Methods in bdv.viewer.state with parameters of type Source
Modifier and Type	Method and Description
`int`	ViewerState.`getBestMipMapLevel(AffineTransform3D screenScaleTransform, Source<?> source)` Deprecated. Get the mipmap level that best matches the given screen scale for the given source.
`void`	ViewerState.`removeSource(Source<?> source)` Deprecated.
`void`	ViewerState.`setCurrentSource(Source<?> source)` Deprecated. Make the given source current.

Uses of Source in bigwarp

Methods in bigwarp that return Source
Modifier and Type	Method and Description
`static Source<?>`	BigWarpInit.`loadN5Source(String n5Root, String n5Dataset)`
`static <T extends org.janelia.saalfeldlab.n5.metadata.N5Metadata> Source<?>`	BigWarpInit.`openAsSource(org.janelia.saalfeldlab.n5.N5Reader n5, T meta, boolean isVolatile)`
`static Source<?>`	BigWarpInit.`openAsSourceMulti(org.janelia.saalfeldlab.n5.N5Reader n5, org.janelia.saalfeldlab.n5.metadata.MultiscaleMetadata<?> multiMeta, boolean isVolatile)`

Methods in bigwarp with parameters of type Source
Modifier and Type	Method and Description
`static <T> BigWarp.BigWarpData<?>`	BigWarpInit.`add(BigWarp.BigWarpData bwdata, Source<T> src, int setupId, int numTimepoints, boolean isMoving)`
`static BigWarp.BigWarpData<?>`	BigWarpInit.`createBigWarpData(Source<?>[] movingSourceList, Source<?>[] fixedSourceList, String[] names)` Create `BigWarp.BigWarpData` from two `AbstractSpimData`.
`static BigWarp.BigWarpData<?>`	BigWarpInit.`createBigWarpData(Source<?>[] movingSourceList, Source<?>[] fixedSourceList, String[] names)` Create `BigWarp.BigWarpData` from two `AbstractSpimData`.
`static void`	BigWarpInit.`initSetup(Source<?> src, int setupId, List<ConverterSetup> converterSetups, List<SourceAndConverter<?>> sources)`
`static void`	BigWarpInit.`initSourceARGB(Source<ARGBType> src, int setupId, List<ConverterSetup> converterSetups, List<SourceAndConverter<?>> sources)`
`static <T extends RealType<T>> void`	BigWarpInit.`initSourceReal(Source<T> src, int setupId, List<ConverterSetup> converterSetups, List<SourceAndConverter<?>> sources)`

Uses of Source in bigwarp.source

Classes in bigwarp.source that implement Source
Modifier and Type	Class and Description
`class`	`GridSource<T extends RealType<T>>`
`class`	`JacobianDeterminantSource<T extends RealType<T>>`
`class`	`WarpMagnitudeSource<T extends RealType<T>>`

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