Uses of Class spim.process.fusion.boundingbox.BoundingBoxGUI (Fiji Javadocs 0-SNAPSHOT API)

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Packages that use BoundingBoxGUI
Package	Description
spim.fiji.plugin
spim.fiji.plugin.fusion
spim.process.fusion.boundingbox
spim.process.fusion.boundingbox.automatic
spim.process.fusion.deconvolution
spim.process.fusion.export
spim.process.fusion.weightedavg

Uses of BoundingBoxGUI in spim.fiji.plugin

Fields in spim.fiji.plugin with type parameters of type BoundingBoxGUI
Modifier and Type	Field and Description
`static ArrayList<BoundingBoxGUI>`	Image_Fusion.`staticBoundingBoxAlgorithms`
`static ArrayList<BoundingBoxGUI>`	Define_Bounding_Box.`staticBoundingBoxAlgorithms`

Uses of BoundingBoxGUI in spim.fiji.plugin.fusion

Methods in spim.fiji.plugin.fusion with parameters of type BoundingBoxGUI
Modifier and Type	Method and Description
`protected abstract Map<ViewSetup,ViewSetup>`	Fusion.`createNewViewSetups(BoundingBoxGUI bb)` Set up the list of new viewsetups that are created with this fusion.
`void`	Fusion.`defineNewViewSetups(BoundingBoxGUI bb)`
`abstract boolean`	Fusion.`fuseData(BoundingBoxGUI bb, ImgExport exporter)` Fuses and saves/displays

Uses of BoundingBoxGUI in spim.process.fusion.boundingbox

Subclasses of BoundingBoxGUI in spim.process.fusion.boundingbox
Modifier and Type	Class and Description
`class`	`AutomaticBoundingBox`
`class`	`AutomaticReorientation`
`class`	`BigDataViewerBoundingBox`
`class`	`PreDefinedBoundingBox`

Methods in spim.process.fusion.boundingbox that return BoundingBoxGUI
Modifier and Type	Method and Description
`BoundingBoxGUI`	BoundingBoxGUI.`newInstance(SpimData2 spimData, List<ViewId> viewIdsToProcess)`

Uses of BoundingBoxGUI in spim.process.fusion.boundingbox.automatic

Constructors in spim.process.fusion.boundingbox.automatic with parameters of type BoundingBoxGUI
Constructor and Description
`MinFilterThreshold(SpimData2 spimData, List<ViewId> viewIdsToProcess, Channel channel, TimePoint timepoint, BoundingBoxGUI bb, double background, int discardedObjectSize, boolean loadSequentially, boolean displaySegmentationImage)`

Uses of BoundingBoxGUI in spim.process.fusion.deconvolution

Methods in spim.process.fusion.deconvolution with parameters of type BoundingBoxGUI
Modifier and Type	Method and Description
`protected Map<ViewSetup,ViewSetup>`	EfficientBayesianBased.`createNewViewSetups(BoundingBoxGUI bb)`
`protected void`	EfficientBayesianBased.`displayParametersAndPSFs(BoundingBoxGUI bb, Channel channel, HashMap<Channel,ChannelPSF> extractPSFLabels)`
`boolean`	EfficientBayesianBased.`fuseData(BoundingBoxGUI bb, ImgExport exporter)`

Constructors in spim.process.fusion.deconvolution with parameters of type BoundingBoxGUI
Constructor and Description
`ProcessForDeconvolution(SpimData2 spimData, List<ViewId> viewIdsToProcess, BoundingBoxGUI bb, int[] blendingBorder, int[] blendingRange)`

Uses of BoundingBoxGUI in spim.process.fusion.export

Methods in spim.process.fusion.export with parameters of type BoundingBoxGUI
Modifier and Type	Method and Description
`<T extends RealType<T> & NativeType<T>> void`	DisplayImage.`exportImage(RandomAccessibleInterval<T> img, BoundingBoxGUI bb, String title)`
`<T extends RealType<T> & NativeType<T>> boolean`	Save3dTIFF.`exportImage(RandomAccessibleInterval<T> img, BoundingBoxGUI bb, TimePoint tp, ViewSetup vs)`
`<T extends RealType<T> & NativeType<T>> boolean`	ImgExport.`exportImage(RandomAccessibleInterval<T> img, BoundingBoxGUI bb, TimePoint tp, ViewSetup vs)` Exports the image (min and max intensity will be computed)
`<T extends RealType<T> & NativeType<T>> boolean`	ExportSpimData2TIFF.`exportImage(RandomAccessibleInterval<T> img, BoundingBoxGUI bb, TimePoint tp, ViewSetup vs)`
`<T extends RealType<T> & NativeType<T>> boolean`	ExportSpimData2HDF5.`exportImage(RandomAccessibleInterval<T> img, BoundingBoxGUI bb, TimePoint tp, ViewSetup vs)`
`<T extends RealType<T> & NativeType<T>> boolean`	DisplayImage.`exportImage(RandomAccessibleInterval<T> img, BoundingBoxGUI bb, TimePoint tp, ViewSetup vs)`
`<T extends RealType<T> & NativeType<T>> boolean`	AppendSpimData2HDF5.`exportImage(RandomAccessibleInterval<T> img, BoundingBoxGUI bb, TimePoint tp, ViewSetup vs)`
`<T extends RealType<T> & NativeType<T>> boolean`	AppendSpimData2.`exportImage(RandomAccessibleInterval<T> img, BoundingBoxGUI bb, TimePoint tp, ViewSetup vs)`
`<T extends RealType<T> & NativeType<T>> boolean`	Save3dTIFF.`exportImage(RandomAccessibleInterval<T> img, BoundingBoxGUI bb, TimePoint tp, ViewSetup vs, double min, double max)`
`<T extends RealType<T> & NativeType<T>> boolean`	ImgExport.`exportImage(RandomAccessibleInterval<T> img, BoundingBoxGUI bb, TimePoint tp, ViewSetup vs, double min, double max)` Exports the image using a predefined min/max
`<T extends RealType<T> & NativeType<T>> boolean`	ExportSpimData2TIFF.`exportImage(RandomAccessibleInterval<T> img, BoundingBoxGUI bb, TimePoint tp, ViewSetup vs, double min, double max)`
`<T extends RealType<T> & NativeType<T>> boolean`	ExportSpimData2HDF5.`exportImage(RandomAccessibleInterval<T> img, BoundingBoxGUI bb, TimePoint tp, ViewSetup vs, double min, double max)`
`<T extends RealType<T> & NativeType<T>> boolean`	DisplayImage.`exportImage(RandomAccessibleInterval<T> img, BoundingBoxGUI bb, TimePoint tp, ViewSetup vs, double min, double max)`
`<T extends RealType<T> & NativeType<T>> boolean`	AppendSpimData2HDF5.`exportImage(RandomAccessibleInterval<T> img, BoundingBoxGUI bb, TimePoint tp, ViewSetup vs, double min, double max)`
`<T extends RealType<T> & NativeType<T>> boolean`	AppendSpimData2.`exportImage(RandomAccessibleInterval<T> img, BoundingBoxGUI bb, TimePoint tp, ViewSetup vs, double min, double max)`

Uses of BoundingBoxGUI in spim.process.fusion.weightedavg

Methods in spim.process.fusion.weightedavg with parameters of type BoundingBoxGUI
Modifier and Type	Method and Description
`static Map<ViewSetup,ViewSetup>`	WeightedAverageFusion.`assembleNewViewSetupsFusion(SpimData2 spimData, List<ViewId> viewIdsToProcess, BoundingBoxGUI bb, String newAngleName, String newIlluminationName)` Creates one new Angle and one new Illumination for the fused dataset.
`static Map<ViewSetup,ViewSetup>`	WeightedAverageFusion.`assembleNewViewSetupsSequential(SpimData2 spimData, List<ViewId> viewIdsToProcess, BoundingBoxGUI bb)` Duplicates all Angles and Illuminations that are processed.
`protected Map<ViewSetup,ViewSetup>`	WeightedAverageFusion.`createNewViewSetups(BoundingBoxGUI bb)`
`boolean`	WeightedAverageFusion.`fuseData(BoundingBoxGUI bb, ImgExport exporter)`

Constructors in spim.process.fusion.weightedavg with parameters of type BoundingBoxGUI
Constructor and Description
`ProcessFusion(SpimData2 spimData, List<ViewId> viewIdsToProcess, BoundingBoxGUI bb, boolean useBlending, boolean useContentBased)`
`ProcessIndependent(SpimData2 spimData, List<ViewId> viewIdsToProcess, BoundingBoxGUI bb, ImgExport export, Map<ViewSetup,ViewSetup> newViewsetups)`
`ProcessIndependentPortion(ImagePortion portion, RandomAccessibleInterval<T> img, InterpolatorFactory<T,RandomAccessible<T>> interpolatorFactory, AffineTransform3D transform, Img<T> fusedImg, BoundingBoxGUI bb)`
`ProcessParalell(SpimData2 spimData, List<ViewId> viewIdsToProcess, BoundingBoxGUI bb, boolean useBlending, boolean useContentBased)`
`ProcessParalellPortion(ImagePortion portion, ArrayList<RandomAccessibleInterval<T>> imgs, InterpolatorFactory<T,RandomAccessible<T>> interpolatorFactory, AffineTransform3D[] transforms, Img<T> fusedImg, BoundingBoxGUI bb)`
`ProcessParalellPortionWeight(ImagePortion portion, ArrayList<RandomAccessibleInterval<T>> imgs, ArrayList<RealRandomAccessible<FloatType>> weights, InterpolatorFactory<T,RandomAccessible<T>> interpolatorFactory, AffineTransform3D[] transforms, Img<T> fusedImg, BoundingBoxGUI bb)`
`ProcessParalellPortionWeights(ImagePortion portion, ArrayList<RandomAccessibleInterval<T>> imgs, ArrayList<ArrayList<RealRandomAccessible<FloatType>>> weights, InterpolatorFactory<T,RandomAccessible<T>> interpolatorFactory, AffineTransform3D[] transforms, Img<T> fusedImg, BoundingBoxGUI bb)`
`ProcessSequential(SpimData2 spimData, List<ViewId> viewIdsToProcess, BoundingBoxGUI bb, boolean useBlending, boolean useContentBased, int numSequentialViews)`
`ProcessSequentialPortion(ImagePortion portion, ArrayList<RandomAccessibleInterval<T>> imgs, InterpolatorFactory<T,RandomAccessible<T>> interpolatorFactory, AffineTransform3D[] transforms, Img<T> fusedImg, Img<FloatType> weightImg, BoundingBoxGUI bb)`
`ProcessSequentialPortionWeight(ImagePortion portion, ArrayList<RandomAccessibleInterval<T>> imgs, ArrayList<RealRandomAccessible<FloatType>> weights, InterpolatorFactory<T,RandomAccessible<T>> interpolatorFactory, AffineTransform3D[] transforms, Img<T> fusedImg, Img<FloatType> weightImg, BoundingBoxGUI bb)`
`ProcessSequentialPortionWeights(ImagePortion portion, ArrayList<RandomAccessibleInterval<T>> imgs, ArrayList<ArrayList<RealRandomAccessible<FloatType>>> weights, InterpolatorFactory<T,RandomAccessible<T>> interpolatorFactory, AffineTransform3D[] transforms, Img<T> fusedImg, Img<FloatType> weightImg, BoundingBoxGUI bb)`

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