| Modifier and Type | Method and Description |
|---|---|
void |
Multi_View_Deconvolution.deconvolve(ViewStructure viewStructure,
SPIMConfiguration conf,
int timePoint) |
| Modifier and Type | Method and Description |
|---|---|
protected void |
RegistrationStatistics.collect(ViewStructure viewStructure) |
| Constructor and Description |
|---|
RegistrationStatistics(ViewStructure viewStructure)
Call this class after a registration is performed and it will collect the
information it wants
|
| Modifier and Type | Method and Description |
|---|---|
ViewStructure |
Reconstruction.getCurrentViewStructure() |
| Modifier and Type | Method and Description |
|---|---|
protected void |
Reconstruction.addExternalTransformation(ViewStructure viewStructure) |
| Modifier and Type | Field and Description |
|---|---|
protected ViewStructure |
SPIMImageFusion.viewStructure |
| Modifier and Type | Method and Description |
|---|---|
static void |
PreDeconvolutionFusionSequential.computeOverlap(Image<FloatType> overlap,
ArrayList<ViewDataBeads> views,
ViewStructure viewStructure,
int cropOffsetX,
int cropOffsetY,
int cropOffsetZ,
int scale,
Point3f min) |
void |
FusionControl.fuse(ViewStructure viewStructure,
int timePoint) |
void |
FusionControl.fuse(ViewStructure viewStructure,
ViewStructure referenceViewStructure,
int timePoint) |
| Modifier and Type | Method and Description |
|---|---|
static ExtractPSF |
ExtractPSF.loadAndTransformPSF(ArrayList<String> fileName,
boolean transformPSFs,
ViewStructure viewStructure) |
| Constructor and Description |
|---|
ExtractPSF(ViewStructure viewStructure) |
| Constructor and Description |
|---|
AutomaticAngleSetup(ViewStructure viewStructure) |
| Modifier and Type | Field and Description |
|---|---|
protected ViewStructure |
ViewDataBeads.viewStructure
The structure of the views that will be aligned
|
| Modifier and Type | Method and Description |
|---|---|
ViewStructure |
ViewDataBeads.getViewStructure() |
static <M extends AbstractAffineModel3D<M>> |
ViewStructure.initViewStructure(SPIMConfiguration conf,
int timePointIndex,
M model,
String id,
int debugLevel)
This static methods creates an instance of
ViewStructure with all ViewDataBeads completely instantiated. |
| Modifier and Type | Method and Description |
|---|---|
protected void |
ViewDataBeads.setViewStructure(ViewStructure viewStructure) |
| Modifier and Type | Field and Description |
|---|---|
ViewStructure |
BeadSegmentation.viewStructure |
| Modifier and Type | Method and Description |
|---|---|
ViewStructure |
BeadRegistration.getViewStructure()
The
ViewStructure this BeadRegistration is working with |
| Modifier and Type | Method and Description |
|---|---|
static TileConfigurationSPIM |
BeadRegistration.registerViews(ViewStructure viewStructure) |
static TileConfigurationSPIM |
BeadRegistration.registerViews(ViewStructure viewStructure,
boolean resetW)
Registers all
ViewDataBeads within a given ViewStructure, taking the first view as fixed Tile
Registration works without z-scaling, it has to be concatenated afterwards if wanted |
void |
BeadRegistration.registerViewStructure(ViewStructure template)
Registers the template
ViewStructure to the ViewStructure of this BeadRegistration object, see BeadRegistration.registerViewStructure(ViewStructure, ViewStructure) |
static void |
BeadRegistration.registerViewStructure(ViewStructure reference,
ViewStructure template)
Registers the
ViewDataBeads of the template ViewStructure to the ViewDataBeads of the reference ViewStructure. |
| Constructor and Description |
|---|
BeadRegistration(ViewStructure viewStructure)
Instantiates the object with a certain
ViewStructure it is working on when using non-static method calls |
BeadSegmentation(ViewStructure viewStructure) |
| Constructor and Description |
|---|
PreviewRegistration(ViewStructure viewStructure) |
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