Modifier and Type | Method and Description |
---|---|
protected WizardSequence |
TrackMatePlugIn.createSequence(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings)
Hook for subclassers:
Will create and position the sequence that will be played by the wizard launched by this plugin. |
protected WizardSequence |
ManualTrackingPlugIn.createSequence(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
Modifier and Type | Method and Description |
---|---|
static BranchTableView |
TrackBranchAnalysis.createBranchTable(Model model,
SelectionModel selectionModel) |
static AllSpotsTableView |
ExportAllSpotsStatsAction.createSpotsTable(Model model,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
static TrackTableView |
ExportStatsTablesAction.createTrackTables(Model model,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
void |
TrimNotVisibleAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
TrackMateAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent)
Executes this action within an application specified by the parameters.
|
void |
TrackBranchAnalysis.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
SpotGaussianFitter.SpotGaussianFitterAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
ResetSpotTimeFeatureAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
RecomputeFeatureAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
PlotNSpotsVsTimeAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
MergeFileAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
LabelImgExporter.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame gui) |
void |
IcyTrackExporter.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
ISBIChallengeExporter.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
ExtractTrackStackAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
ExportTracksToXML.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
ExportStatsTablesAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
ExportAllSpotsStatsAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
CloseGapsByLinearInterpolationAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
CaptureOverlayAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame gui) |
Constructor and Description |
---|
AbstractSemiAutoTracker(Model model,
SelectionModel selectionModel,
Logger logger) |
SemiAutoTracker(Model model,
SelectionModel selectionModel,
ij.ImagePlus imp,
Logger logger) |
Modifier and Type | Field and Description |
---|---|
protected SelectionModel |
ModelDataset.selectionModel |
Constructor and Description |
---|
EdgeCollectionDataset(Model model,
SelectionModel selectionModel,
DisplaySettings ds,
String xFeature,
List<String> yFeatures,
List<org.jgrapht.graph.DefaultWeightedEdge> edges) |
EdgeFeatureGrapher(List<org.jgrapht.graph.DefaultWeightedEdge> edges,
String xFeature,
List<String> yFeatures,
Model model,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
ModelDataset(Model model,
SelectionModel selectionModel,
DisplaySettings ds,
String xFeature,
List<String> yFeatures) |
SpotCollectionDataset(Model model,
SelectionModel selectionModel,
DisplaySettings ds,
String xFeature,
List<String> yFeatures,
List<Spot> spots) |
SpotFeatureGrapher(List<Spot> spots,
String xFeature,
List<String> yFeatures,
Model model,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
TrackCollectionDataset(Model model,
SelectionModel selectionModel,
DisplaySettings ds,
String xFeature,
List<String> yFeatures,
List<Integer> trackIDs) |
TrackFeatureGrapher(List<Integer> trackIDs,
String xFeature,
List<String> yFeatures,
Model model,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
Constructor and Description |
---|
ActionChooserPanel(ActionProvider actionProvider,
TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
GrapherPanel(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
Constructor and Description |
---|
TrackMateWizardSequence(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
Constructor and Description |
---|
ActionChooserDescriptor(ActionProvider actionProvider,
TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
GrapherDescriptor(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
Modifier and Type | Method and Description |
---|---|
Collection<TrackMateModelView> |
TmXmlReader.getViews(ViewProvider provider,
Model model,
Settings settings,
SelectionModel selectionModel,
DisplaySettings displaySettings)
Returns the collection of views that were saved in this file.
|
Modifier and Type | Method and Description |
---|---|
static void |
ModelTools.linkSpots(Model model,
SelectionModel selectionModel)
Links all the spots in the selection, in time-forward order.
|
static void |
ModelTools.selectTrack(SelectionModel selectionModel)
Sets the content of the specified selection model to be the whole tracks
the selected spots belong to.
|
static void |
ModelTools.selectTrackDownward(SelectionModel selectionModel)
Sets the content of the specified selection model to be the whole tracks
the selected spots belong to, but searched for only forward in time
(downward).
|
static void |
ModelTools.selectTrackUpward(SelectionModel selectionModel)
Sets the content of the specified selection model to be the whole tracks
the selected spots belong to, but searched for only backward in time
(backward).
|
Constructor and Description |
---|
TrackNavigator(Model model,
SelectionModel selectionModel) |
Modifier and Type | Field and Description |
---|---|
protected SelectionModel |
AbstractTrackMateModelView.selectionModel |
Modifier and Type | Method and Description |
---|---|
TrackMateModelView |
ViewFactory.create(Model model,
Settings settings,
SelectionModel selectionModel,
DisplaySettings displaySettings)
Returns a new instance of the concrete view.
|
Constructor and Description |
---|
AbstractTrackMateModelView(Model model,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
Modifier and Type | Method and Description |
---|---|
SelectionModel |
HyperStackDisplayer.getSelectionModel() |
Modifier and Type | Method and Description |
---|---|
TrackMateModelView |
HyperStackDisplayerFactory.create(Model model,
Settings settings,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
Constructor and Description |
---|
HyperStackDisplayer(Model model,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
HyperStackDisplayer(Model model,
SelectionModel selectionModel,
ij.ImagePlus imp,
DisplaySettings displaySettings) |
Modifier and Type | Method and Description |
---|---|
static TablePanel<BranchTableView.Branch> |
BranchTableView.createBranchTable(Model model,
SelectionModel selectionModel) |
Constructor and Description |
---|
AllSpotsTableView(Model model,
SelectionModel selectionModel,
DisplaySettings ds) |
BranchTableView(Model model,
SelectionModel selectionModel) |
TrackTableView(Model model,
SelectionModel selectionModel,
DisplaySettings ds) |
Modifier and Type | Method and Description |
---|---|
SelectionModel |
TrackScheme.getSelectionModel() |
Modifier and Type | Method and Description |
---|---|
TrackMateModelView |
TrackSchemeFactory.create(Model model,
Settings settings,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
Constructor and Description |
---|
InfoPane(Model model,
SelectionModel selectionModel)
Creates a new Info pane that displays information on the current spot
selection in a table.
|
TrackScheme(Model model,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
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