Hierarchy For All Packages

Package Hierarchies:

• bunwarpj.trakem2.transform,
• ini.trakem2,
• ini.trakem2.analysis,
• ini.trakem2.display,
• ini.trakem2.display.d3d,
• ini.trakem2.display.graphics,
• ini.trakem2.display.inspect,
• ini.trakem2.display.paint,
• ini.trakem2.imaging,
• ini.trakem2.imaging.filters,
• ini.trakem2.io,
• ini.trakem2.parallel,
• ini.trakem2.persistence,
• ini.trakem2.plugin,
• ini.trakem2.scripting,
• ini.trakem2.tree,
• ini.trakem2.utils,
• lenscorrection,
• mpi.fruitfly.general,
• mpi.fruitfly.math,
• mpi.fruitfly.math.datastructures,
• mpi.fruitfly.registration,
• mpicbg.trakem2.align,
• mpicbg.trakem2.align.concurrent,
• mpicbg.trakem2.transform,
• mpicbg.trakem2.util,
• org.janelia.intensity

Class Hierarchy

• java.lang.Object
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • ini.trakem2.display.Node.NodeCollection<I>
  • mpicbg.trakem2.align.AbstractLayerAlignmentParam (implements java.io.Serializable)
    • mpicbg.trakem2.align.ElasticLayerAlignment.Param (implements java.io.Serializable)
    • mpicbg.trakem2.align.RegularizedAffineLayerAlignment.Param (implements java.io.Serializable)
  • java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    • java.util.HashMap<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      • ini.trakem2.utils.TypedHashMap<K,V>
  • mpicbg.models.AbstractModel<M> (implements mpicbg.models.Model<M>, java.io.Serializable)
    • bunwarpj.trakem2.transform.CubicBSplineTransform (implements mpicbg.trakem2.transform.CoordinateTransform)
    • lenscorrection.PolynomialModel2D
  • ini.trakem2.tree.AbstractTreeTransferHandler (implements java.awt.dnd.DragGestureListener, java.awt.dnd.DragSourceListener, java.awt.dnd.DropTargetListener)
    • ini.trakem2.tree.DefaultTreeTransferHandler
  • ini.trakem2.display.graphics.AddARGBComposite (implements java.awt.Composite)
  • ini.trakem2.display.AffineTransformMode (implements ini.trakem2.display.Mode)
  • mpicbg.trakem2.align.Align
  • mpicbg.trakem2.align.Align.Param (implements java.io.Serializable)
    • mpicbg.trakem2.align.Align.ParamOptimize
  • mpicbg.trakem2.align.AlignLayersTask
  • mpicbg.trakem2.align.AlignmentUtils
  • mpicbg.trakem2.align.AlignmentUtils.ParamPointMatch (implements java.io.Serializable)
  • mpicbg.trakem2.align.AlignTask
  • mpicbg.trakem2.align.AlignTask.ReferenceData
  • ini.trakem2.io.AmiraImporter
  • ini.trakem2.utils.AreaUtils
  • ini.trakem2.display.AreaWrapper
  • ini.trakem2.display.AreaWrapper.PaintParameters
  • mpi.fruitfly.general.ArrayConverter
  • ini.trakem2.imaging.BinaryInterpolation2D (implements mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • ini.trakem2.imaging.Blending
  • mpicbg.trakem2.align.concurrent.BlockMatchPairCallable (implements java.util.concurrent.Callable<V>, java.io.Serializable)
  • mpicbg.trakem2.align.concurrent.BlockMatchPairCallable.BlockMatchResults (implements java.io.Serializable)
  • ini.trakem2.display.Bucket
  • ini.trakem2.persistence.Cache
  • ini.trakem2.analysis.Centrality
  • ini.trakem2.analysis.Centrality.EtchingStep<T> (implements java.util.Map.Entry<K,V>)
  • ini.trakem2.utils.CircularSequence
  • ini.trakem2.imaging.filters.CLAHE (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.display.graphics.ColorYCbCrComposite (implements java.awt.Composite)
  • ini.trakem2.analysis.Compare
  • ini.trakem2.analysis.Compare.CATAParameters
  • ini.trakem2.analysis.Compare.Chain
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Canvas (implements javax.accessibility.Accessible)
      • ini.trakem2.imaging.ContrastPlot
      • ij.gui.ImageCanvas (implements java.lang.Cloneable, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
        • ini.trakem2.display.DisplayCanvas (implements java.awt.event.KeyListener, java.awt.event.MouseWheelListener)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • javax.swing.tree.DefaultTreeCellRenderer (implements javax.swing.tree.TreeCellRenderer)
            • ini.trakem2.tree.DNDTree.NodeRenderer
              • ini.trakem2.tree.LayerTree.LayerThingNodeRender
              • ini.trakem2.tree.ProjectTree.ProjectThingNodeRenderer
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • ini.trakem2.display.Channel (implements java.awt.event.ItemListener, java.awt.event.MouseListener)
          • ini.trakem2.display.DisplayablePanel (implements java.awt.event.MouseListener)
          • ini.trakem2.display.DisplayNavigator (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
          • ini.trakem2.display.LayerPanel (implements java.awt.event.MouseListener)
          • ini.trakem2.utils.OptionPanel
          • ini.trakem2.display.RollingPanel (implements java.awt.event.AdjustmentListener, java.awt.event.ComponentListener, java.awt.event.MouseWheelListener)
          • ini.trakem2.display.SnapshotPanel (implements java.awt.event.MouseListener)
        • javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • javax.swing.JTextField (implements javax.swing.SwingConstants)
            • ini.trakem2.utils.IntegerField
        • javax.swing.JTree (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • ini.trakem2.tree.DNDTree (implements java.awt.event.KeyListener, javax.swing.event.TreeExpansionListener)
            • ini.trakem2.tree.LayerTree (implements java.awt.event.ActionListener, java.awt.event.MouseListener)
            • ini.trakem2.tree.ProjectTree (implements java.awt.event.ActionListener, java.awt.event.MouseListener)
            • ini.trakem2.tree.TemplateTree (implements java.awt.event.ActionListener, java.awt.event.MouseListener)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • ini.trakem2.display.YesNoDialog (implements java.awt.event.ActionListener, java.awt.event.KeyListener)
        • java.awt.Frame (implements java.awt.MenuContainer)
          • ij.gui.ImageWindow (implements java.awt.event.FocusListener, java.awt.event.MouseWheelListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener)
            • ini.trakem2.display.FakeImageWindow
  • ini.trakem2.imaging.ContrastEnhancerWrapper
  • ini.trakem2.ControlWindow
  • ini.trakem2.display.Coordinate<T>
  • ini.trakem2.io.CoordinateTransformXML
  • ini.trakem2.imaging.filters.CorrectBackground (implements ini.trakem2.imaging.filters.IFilter)
  • mpi.fruitfly.registration.CrossCorrelation2D
  • ini.trakem2.persistence.DBObject
    • ini.trakem2.display.Display (implements java.awt.event.ActionListener, ij.IJEventListener)
    • ini.trakem2.display.Displayable (implements ini.trakem2.display.Paintable)
      • ini.trakem2.display.DLabel (implements ini.trakem2.display.VectorData)
      • ini.trakem2.display.LayerSet (implements ini.trakem2.display.Bucketable)
      • ini.trakem2.display.Patch (implements ini.trakem2.display.ImageData)
      • ini.trakem2.display.Profile (implements ini.trakem2.display.VectorData)
      • ini.trakem2.display.ZDisplayable
        • ini.trakem2.display.AreaList (implements ini.trakem2.display.AreaContainer, ini.trakem2.display.VectorData)
        • ini.trakem2.display.Ball (implements ini.trakem2.display.VectorData)
        • ini.trakem2.display.Dissector (implements ini.trakem2.display.VectorData)
        • ini.trakem2.display.Pipe (implements ini.trakem2.display.Line3D, ini.trakem2.display.VectorData)
        • ini.trakem2.display.Polyline (implements ini.trakem2.display.Line3D, ini.trakem2.display.VectorData)
        • ini.trakem2.display.Stack (implements ini.trakem2.display.ImageData)
        • ini.trakem2.display.Tree<T> (implements ini.trakem2.display.VectorData)
          • ini.trakem2.display.AreaTree (implements ini.trakem2.display.AreaContainer)
          • ini.trakem2.display.Treeline
            • ini.trakem2.display.Connector
    • ini.trakem2.display.Layer (implements ini.trakem2.display.Bucketable, java.lang.Comparable<T>)
    • ini.trakem2.tree.LayerThing (implements ini.trakem2.tree.TitledThing)
    • ini.trakem2.Project
    • ini.trakem2.tree.ProjectThing (implements ini.trakem2.tree.TitledThing)
    • ini.trakem2.tree.TemplateThing (implements java.lang.Comparable<T>, ini.trakem2.tree.Thing)
  • ini.trakem2.display.graphics.DefaultGraphicsSource (implements ini.trakem2.display.graphics.GraphicsSource)
  • org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
    • ini.trakem2.persistence.TMLHandler
  • ini.trakem2.imaging.filters.DefaultMinAndMax (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.display.DefaultMode (implements ini.trakem2.display.Mode)
  • ini.trakem2.display.graphics.DifferenceARGBComposite (implements java.awt.Composite)
  • ini.trakem2.utils.Dispatcher
  • ini.trakem2.utils.Dispatcher.DispatcherThreadFactory (implements java.util.concurrent.ThreadFactory)
  • ini.trakem2.display.Display.GridOverlay
  • ini.trakem2.display.Display3D
  • ini.trakem2.display.Display3D.VectorStringContent
  • ini.trakem2.display.d3d.Display3DGUI
  • ini.trakem2.display.Displayable.DataPackage
  • ini.trakem2.display.Displayable.DoEdit (implements ini.trakem2.display.DoStep)
  • ini.trakem2.display.Displayable.DoEdits (implements ini.trakem2.display.DoStep)
  • ini.trakem2.display.Displayable.DoTransforms (implements ini.trakem2.display.DoStep)
  • ini.trakem2.display.Displayable.SliderListener (implements java.awt.event.AdjustmentListener, java.awt.event.TextListener)
  • ini.trakem2.display.DisplayableChooser (implements java.awt.event.ActionListener)
  • ini.trakem2.display.DisplayCanvas.RepaintProperties (implements ini.trakem2.display.AbstractOffscreenThread.RepaintProperties)
  • ini.trakem2.display.DisplayCanvas.Screenshot
  • ini.trakem2.display.DisplayCanvas.ScreenshotProperties
  • lenscorrection.Distortion_Correction (implements ij.plugin.PlugIn)
  • lenscorrection.Distortion_Correction.BasicParam
    • lenscorrection.Distortion_Correction.PluginParam
    • lenscorrection.DistortionCorrectionTask.CorrectDistortionFromSelectionParam
  • lenscorrection.Distortion_Correction.PointMatchCollectionAndAffine
  • lenscorrection.DistortionCorrectionTask
  • ini.trakem2.utils.DNDInsertImage (implements java.awt.dnd.DropTargetListener)
  • ini.trakem2.persistence.DownsamplerMipMaps
  • ini.trakem2.tree.DTDParser
  • mpicbg.trakem2.align.ElasticLayerAlignment
  • mpicbg.trakem2.align.ElasticMontage
  • mpicbg.trakem2.align.ElasticMontage.Param (implements java.io.Serializable)
  • ini.trakem2.imaging.filters.EnhanceContrast (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.imaging.filters.EqualizeHistogram (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.parallel.ExecutorProvider
    • ini.trakem2.parallel.DefaultExecutorProvider
  • mpicbg.trakem2.transform.ExportARGB
  • mpicbg.trakem2.transform.ExportBestFlatImage
  • ini.trakem2.persistence.ExportMultilevelTiles
  • mpicbg.trakem2.transform.ExportUnsignedByte
  • mpicbg.trakem2.transform.ExportUnsignedByte.ImageData
  • mpicbg.trakem2.transform.ExportUnsignedByte.MipMapSource (implements mpicbg.trakem2.transform.ExportUnsignedByte.ImageSource)
  • mpicbg.trakem2.transform.ExportUnsignedByte.OriginalSource (implements mpicbg.trakem2.transform.ExportUnsignedByte.ImageSource)
  • mpicbg.trakem2.transform.ExportUnsignedShort
  • mpicbg.trakem2.transform.ExportUnsignedShort.PatchIntensityRange
  • mpicbg.trakem2.transform.ExportUnsignedShort.PatchTransform
  • ini.trakem2.imaging.FastIntegralImage
  • ini.trakem2.utils.FieldMapView (implements java.util.Map<K,V>)
  • ini.trakem2.persistence.FilePathRepair
  • ini.trakem2.imaging.filters.FilterEditor
  • mpi.fruitfly.math.datastructures.FloatArray
    • mpi.fruitfly.math.datastructures.FloatArray2D
    • mpi.fruitfly.math.datastructures.FloatArray3D
    • mpi.fruitfly.math.datastructures.FloatArray4D
  • ini.trakem2.display.FreeHandProfile
  • ini.trakem2.imaging.filters.GaussianBlur (implements ini.trakem2.imaging.filters.IFilter)
  • mpi.fruitfly.math.General
  • ini.trakem2.analysis.Graph
  • ini.trakem2.display.GroupingMode (implements ini.trakem2.display.Mode)
    • ini.trakem2.display.ContrastAdjustmentMode
    • ini.trakem2.display.NonLinearTransformMode
  • ini.trakem2.display.GroupingMode.GroupedGraphicsSource (implements ini.trakem2.display.graphics.GraphicsSource)
  • ini.trakem2.display.GroupingMode.PatchRange
  • ini.trakem2.display.GroupingMode.ScreenPatchRange<T> (implements ini.trakem2.display.Paintable)
  • ini.trakem2.utils.History
  • ini.trakem2.utils.IJError
  • mpi.fruitfly.general.ImageArrayConverter
  • ini.trakem2.persistence.ImageBytes
  • ini.trakem2.io.ImageFileFilter (implements java.io.FilenameFilter)
  • ini.trakem2.io.ImageFileHeader
  • mpi.fruitfly.registration.ImageFilter
  • ini.trakem2.display.ImageJCommandListener (implements ij.CommandListener)
  • ij.ImagePlus (implements java.lang.Cloneable, java.awt.image.ImageObserver, ij.measure.Measurements)
    • ini.trakem2.display.FakeImagePlus
    • ini.trakem2.imaging.PatchStack
  • ij.process.ImageProcessor (implements java.lang.Cloneable)
    • ij.process.FloatProcessor
      • ini.trakem2.imaging.FloatProcessorT2
  • ini.trakem2.io.ImageSaver
  • ij.ImageStack
    • ini.trakem2.imaging.LayerStack
    • ij.VirtualStack
      • ini.trakem2.imaging.LazyVirtualStack
  • java.io.InputStream (implements java.io.Closeable)
    • java.io.FilterInputStream
      • java.io.BufferedInputStream
        • ini.trakem2.io.LoggingInputStream
  • ini.trakem2.display.inspect.InspectPatchTrianglesMode (implements ini.trakem2.display.Mode)
  • ini.trakem2.imaging.IntegralHistogram2d
  • ini.trakem2.persistence.IntegralImageMipMaps
  • ini.trakem2.imaging.filters.Invert (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.display.Layer.DoMoveDisplayable (implements ini.trakem2.display.DoStep)
  • ini.trakem2.display.LayerSet.DoChangeTrees (implements ini.trakem2.display.DoStep)
  • ini.trakem2.display.LayerSet.DoMoveZDisplayable (implements ini.trakem2.display.DoStep)
  • ini.trakem2.display.LayerSet.LayerBucket
  • org.janelia.intensity.LinearIntensityMap<T>
  • ini.trakem2.persistence.Loader
    • ini.trakem2.persistence.DBLoader
    • ini.trakem2.persistence.FSLoader
  • ini.trakem2.persistence.Loader.ImageLoadingLock
  • ini.trakem2.utils.Lock
  • ini.trakem2.imaging.filters.LUTBlue (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.imaging.filters.LUTCustom (implements ini.trakem2.imaging.filters.IFilter)
    • ini.trakem2.imaging.filters.LUTOrange
  • ini.trakem2.imaging.filters.LUTCyan (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.imaging.filters.LUTGreen (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.imaging.filters.LUTMagenta (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.imaging.filters.LUTRed (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.imaging.filters.LUTYellow (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.utils.M
  • ini.trakem2.display.ManualAlignMode (implements ini.trakem2.display.Mode)
  • ini.trakem2.display.ManualAlignMode.Landmarks
  • org.janelia.intensity.MatchIntensities (implements ini.trakem2.plugin.TPlugIn)
  • ini.trakem2.utils.MCCube
  • ini.trakem2.utils.MCTriangulator (implements isosurface.Triangulator)
  • ini.trakem2.utils.Merger
  • ini.trakem2.display.MipMapImage
  • ini.trakem2.utils.Montage
  • ini.trakem2.display.graphics.MultiplyARGBComposite (implements java.awt.Composite)
  • mpi.fruitfly.general.MultiThreading
  • ini.trakem2.io.NeuroML
  • ini.trakem2.New_DB_Project (implements ij.plugin.PlugIn)
  • ini.trakem2.New_Project (implements ij.plugin.PlugIn)
  • ini.trakem2.display.Node<T> (implements ini.trakem2.display.Taggable)
    • ini.trakem2.display.AreaTree.AreaNode
    • ini.trakem2.display.Treeline.RadiusNode
      • ini.trakem2.display.Connector.ConnectorNode
  • ini.trakem2.display.Node.NodeIterator<I> (implements java.util.Iterator<E>)
    • ini.trakem2.display.Node.SubtreeIterator<I>
      • ini.trakem2.display.Node.BreadthFirstSubtreeIterator<I>
      • ini.trakem2.display.Node.FilteredIterator<I>
        • ini.trakem2.display.Node.BranchAndEndNodeIterator<I>
        • ini.trakem2.display.Node.BranchNodeIterator<I>
        • ini.trakem2.display.Node.EndNodeIterator<I>
      • ini.trakem2.display.Node.SlabIterator<I>
  • mpicbg.trakem2.transform.NonLinearCoordinateTransform (implements mpicbg.trakem2.transform.CoordinateTransform)
    • lenscorrection.NonLinearTransform
  • ini.trakem2.imaging.filters.Normalize (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.imaging.filters.NormalizeLocalContrast (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.Open_DB_Project (implements ij.plugin.PlugIn)
  • ini.trakem2.Open_Project (implements ij.plugin.PlugIn)
  • ini.trakem2.utils.OptionPanel.Setter
    • ini.trakem2.utils.OptionPanel.BooleanSetter
    • ini.trakem2.utils.OptionPanel.ChoiceIntSetter
    • ini.trakem2.utils.OptionPanel.ChoiceObjectSetter
    • ini.trakem2.utils.OptionPanel.ChoiceStringSetter
    • ini.trakem2.utils.OptionPanel.NumericalSetter
      • ini.trakem2.utils.OptionPanel.DoubleSetter
      • ini.trakem2.utils.OptionPanel.FloatSetter
      • ini.trakem2.utils.OptionPanel.IntSetter
    • ini.trakem2.utils.OptionPanel.StringSetter
  • ini.trakem2.display.Overlay
  • ini.trakem2.imaging.P
  • ini.trakem2.parallel.ParallelMapping<I,O> (implements java.lang.Iterable<T>)
  • ini.trakem2.display.Patch.PatchImage
  • ini.trakem2.display.Patch.TransformProperties
  • ini.trakem2.scripting.PatchScript
  • ini.trakem2.imaging.PhaseCorrelationCalculator
  • ini.trakem2.parallel.Process
  • ini.trakem2.tree.ProjectThing.Profile_List
  • ini.trakem2.persistence.ProjectTiler
  • ini.trakem2.utils.ProjectToolbar (implements java.awt.event.MouseListener)
  • ini.trakem2.io.RagMipMaps
  • ini.trakem2.imaging.filters.RankFilter (implements ini.trakem2.imaging.filters.IFilter)
  • org.janelia.intensity.RansacRegressionFilter (implements org.janelia.intensity.PointMatchFilter)
  • org.janelia.intensity.RansacRegressionReduceFilter (implements org.janelia.intensity.PointMatchFilter)
  • ini.trakem2.io.RawMipMaps
  • ini.trakem2.utils.ReconstructArea
  • ini.trakem2.utils.RedPhone
  • ini.trakem2.display.Region<T>
  • mpicbg.trakem2.align.RegularizedAffineLayerAlignment
  • ini.trakem2.tree.RenameThingStep (implements ini.trakem2.display.DoStep)
  • ini.trakem2.utils.Render
  • org.janelia.intensity.Render
  • ini.trakem2.imaging.filters.ResetMinAndMax (implements ini.trakem2.imaging.filters.IFilter)
  • mpicbg.trakem2.util.RobustNormalizeLocalContrast
  • ini.trakem2.imaging.filters.RobustNormalizeLocalContrast (implements ini.trakem2.imaging.filters.IFilter)
  • mpicbg.trakem2.util.RobustNormalizeLocalContrast.ByteSetter (implements mpicbg.trakem2.util.RobustNormalizeLocalContrast.PixelSetter)
  • mpicbg.trakem2.util.RobustNormalizeLocalContrast.FloatSetter (implements mpicbg.trakem2.util.RobustNormalizeLocalContrast.PixelSetter)
  • mpicbg.trakem2.util.RobustNormalizeLocalContrast.ShortSetter (implements mpicbg.trakem2.util.RobustNormalizeLocalContrast.PixelSetter)
  • ini.trakem2.utils.Saver
  • org.jogamp.java3d.SceneGraphObject
    • org.jogamp.java3d.Node
      • org.jogamp.java3d.Leaf
        • org.jogamp.java3d.Behavior
          • ij3d.behaviors.InteractiveBehavior
            • ini.trakem2.display.d3d.ControlClickBehavior
  • ini.trakem2.utils.Search
  • ini.trakem2.imaging.Segmentation
  • ini.trakem2.imaging.Segmentation.BlowCommander
  • ini.trakem2.imaging.Segmentation.BlowRunner
  • ini.trakem2.imaging.Segmentation.FastMarchingParam
  • ini.trakem2.display.Selection
  • ini.trakem2.display.inspect.ShapeProxy (implements java.awt.Shape)
  • ini.trakem2.persistence.StaleFiles
  • ini.trakem2.persistence.StaleFiles.AlphaMaskPath (implements ini.trakem2.persistence.StaleFiles.Path)
  • ini.trakem2.persistence.StaleFiles.CoordinateTransformPath (implements ini.trakem2.persistence.StaleFiles.Path)
  • ini.trakem2.utils.StdOutWindow
  • ini.trakem2.imaging.StitchingTEM
  • ini.trakem2.imaging.StitchingTEM.PhaseCorrelationParam
  • ini.trakem2.utils.StopWatch
  • ini.trakem2.display.graphics.SubtractARGBComposite (implements java.awt.Composite)
  • ini.trakem2.imaging.filters.SubtractBackground (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.display.Tag (implements java.lang.Comparable<T>)
  • ini.trakem2.parallel.TaskFactory<I,O>
    • ini.trakem2.parallel.CountingTaskFactory<I,O>
  • ini.trakem2.utils.TaskOnEDT<V> (implements java.util.concurrent.Future<V>)
  • ini.trakem2.display.graphics.TestGraphicsSource (implements ini.trakem2.display.graphics.GraphicsSource)
  • java.lang.Thread (implements java.lang.Runnable)
    • mpicbg.trakem2.align.Align.ExtractFeaturesThread
    • mpicbg.trakem2.align.Align.MatchFeaturesAndFindModelThread
    • ini.trakem2.utils.Bureaucrat
    • ini.trakem2.utils.CachingThread
      • ini.trakem2.display.AbstractOffscreenThread
      • ini.trakem2.display.AbstractRepaintThread
    • lenscorrection.DistortionCorrectionTask.AppendCoordinateTransformThread
    • lenscorrection.DistortionCorrectionTask.SetCoordinateTransformThread
    • ini.trakem2.display.GroupingMode.SimpleThread
      • ini.trakem2.display.GroupingMode.Painter
    • ini.trakem2.display.inspect.InspectPatchTrianglesMode.Inspector
  • java.lang.ThreadGroup (implements java.lang.Thread.UncaughtExceptionHandler)
    • ini.trakem2.utils.BigBrother
  • mpicbg.models.Tile<M> (implements java.io.Serializable)
    • mpicbg.trakem2.align.AbstractAffineTile2D<A>
      • mpicbg.trakem2.align.AffineTile2D
      • mpicbg.trakem2.align.GenericAffineTile2D<A>
      • mpicbg.trakem2.align.RigidTile2D
      • mpicbg.trakem2.align.SimilarityTile2D
      • mpicbg.trakem2.align.TranslationTile2D
  • mpicbg.models.TileConfiguration (implements java.io.Serializable)
    • mpicbg.trakem2.align.TileConfiguration
  • ini.trakem2.tree.TrakEM2MLParser
  • ini.trakem2.tree.TransferableNode (implements java.awt.datatransfer.Transferable)
  • ini.trakem2.display.TransformationStep (implements ini.trakem2.utils.History.Step<T>)
  • ini.trakem2.display.Tree.MeasurePathDistance<I>
  • ini.trakem2.display.Tree.MeshData
  • ini.trakem2.display.Tree.Pair
    • ini.trakem2.display.Tree.NodePath
      • ini.trakem2.display.Tree.MeasurementPair
  • ini.trakem2.display.TreeConnectorsView
  • ini.trakem2.display.paint.USHORTPaint (implements java.awt.Paint)
  • mpicbg.trakem2.align.Util
  • mpicbg.trakem2.align.Util.Features (implements java.io.Serializable)
  • mpicbg.trakem2.align.Util.PointMatches (implements java.io.Serializable)
  • ini.trakem2.utils.Utils (implements ij.plugin.PlugIn)
  • ini.trakem2.imaging.filters.ValueToNoise (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.utils.Vector3
  • ini.trakem2.display.VectorDataTransform
  • ini.trakem2.display.VectorDataTransform.ROITransform
  • ini.trakem2.analysis.Vertex<T>
  • ij3d.Volume
    • ini.trakem2.utils.ImgLibVolume<T>
  • ini.trakem2.utils.Worker (implements java.lang.Runnable)
    • ini.trakem2.utils.Worker.Task
  • ini.trakem2.io.XMLFileFilter (implements java.io.FilenameFilter)
  • ini.trakem2.persistence.XMLOptions

Interface Hierarchy

• ini.trakem2.display.AbstractOffscreenThread.RepaintProperties
• ini.trakem2.display.AreaContainer
• ini.trakem2.display.Bucketable
• ini.trakem2.display.DoStep
• mpicbg.trakem2.transform.ExportUnsignedByte.ImageSource
• ini.trakem2.display.graphics.GraphicsSource
• ini.trakem2.utils.History.Step<T>
• ini.trakem2.imaging.filters.IFilter
• ini.trakem2.imaging.ImagePreprocessor
• ini.trakem2.display.Line3D
• ini.trakem2.display.Mode
• ini.trakem2.display.Node.Operation<I>
• ini.trakem2.utils.Operation<I,O>
• ini.trakem2.display.Paintable
  • ini.trakem2.display.ImageData
• org.janelia.intensity.PointMatchFilter
• mpi.fruitfly.math.Quicksortable
• mpicbg.trakem2.util.RobustNormalizeLocalContrast.PixelSetter
• java.io.Serializable
  • ini.trakem2.utils.Filter<T>
• ini.trakem2.persistence.StaleFiles.Path
• ini.trakem2.display.Taggable
• ini.trakem2.tree.Thing
  • ini.trakem2.tree.TitledThing
• ini.trakem2.plugin.TPlugIn
• ini.trakem2.display.VectorData

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.janelia.intensity.LinearIntensityMap.Interpolation