org.janelia.intensity

Class LinearIntensityMap<T extends RealType<T>>

java.lang.Object

org.janelia.intensity.LinearIntensityMap<T>

public class LinearIntensityMap<T extends RealType<T>>
extends Object

Transfer intensities by a linear function y=ax+b with the coefficients a and b being stored as a RealComposite<T> 2d-vector (a, b) in a map. The map is a RealRandomAccessible and the defined interval as passed as an independent parameter. If the coefficients are passed as a raster, the interval is that of a raster. The map is scaled such that it applies to the interval of the input image.

Author:

Stephan Saalfeld saalfelds@janelia.hhmi.org

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	LinearIntensityMap.Interpolation

Field Summary

Fields

Modifier and Type	Field and Description
protected RealRandomAccessible<RealComposite<T>>	coefficients
protected Dimensions	dimensions
protected InterpolatorFactory<RealComposite<T>,RandomAccessible<RealComposite<T>>>	interpolatorFactory
protected Translation	translation

Constructor Summary

Constructors

Constructor and Description
LinearIntensityMap(RandomAccessibleInterval<T> source)
LinearIntensityMap(RandomAccessibleInterval<T> source, InterpolatorFactory<RealComposite<T>,RandomAccessible<RealComposite<T>>> interpolatorFactory)
LinearIntensityMap(RandomAccessibleInterval<T> source, LinearIntensityMap.Interpolation interpolation)

Method Summary

Modifier and Type	Method and Description
static void	main(String[] args)
protected static <S extends RealType<S>,T extends RealType<T>> void	map(IterableInterval<S> image, IterableInterval<RealComposite<T>> coefficients)
protected static <T extends RealType<T>> void	mapARGB(IterableInterval<ARGBType> image, IterableInterval<RealComposite<T>> coefficients)
protected static <S extends RealType<S>,T extends RealType<T>> void	mapComposite(IterableInterval<RealComposite<S>> image, IterableInterval<RealComposite<T>> coefficients)
protected static <S extends RealType<S>,T extends RealType<T>> void	mapCrop(IterableInterval<S> image, IterableInterval<RealComposite<T>> coefficients)
<S extends NumericType<S>> void	run(RandomAccessibleInterval<S> image)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

dimensions

protected final Dimensions dimensions

translation

protected final Translation translation

coefficients

protected final RealRandomAccessible<RealComposite<T extends RealType<T>>> coefficients

interpolatorFactory

protected final InterpolatorFactory<RealComposite<T extends RealType<T>>,RandomAccessible<RealComposite<T extends RealType<T>>>> interpolatorFactory

Constructor Detail

LinearIntensityMap

public LinearIntensityMap(RandomAccessibleInterval<T> source,
                          InterpolatorFactory<RealComposite<T>,RandomAccessible<RealComposite<T>>> interpolatorFactory)

LinearIntensityMap

public LinearIntensityMap(RandomAccessibleInterval<T> source)

LinearIntensityMap

public LinearIntensityMap(RandomAccessibleInterval<T> source,
                          LinearIntensityMap.Interpolation interpolation)

Method Detail

run

public <S extends NumericType<S>> void run(RandomAccessibleInterval<S> image)

map

protected static final <S extends RealType<S>,T extends RealType<T>> void map(IterableInterval<S> image,
                                                                              IterableInterval<RealComposite<T>> coefficients)

mapCrop

protected static final <S extends RealType<S>,T extends RealType<T>> void mapCrop(IterableInterval<S> image,
                                                                                  IterableInterval<RealComposite<T>> coefficients)

mapComposite

protected static final <S extends RealType<S>,T extends RealType<T>> void mapComposite(IterableInterval<RealComposite<S>> image,
                                                                                       IterableInterval<RealComposite<T>> coefficients)

mapARGB

protected static final <T extends RealType<T>> void mapARGB(IterableInterval<ARGBType> image,
                                                            IterableInterval<RealComposite<T>> coefficients)

main

public static void main(String[] args)