org.janelia.intensity

Class MatchIntensities

java.lang.Object

org.janelia.intensity.MatchIntensities

All Implemented Interfaces:

TPlugIn

public class MatchIntensities
extends Object
implements TPlugIn

Author:

Stephan Saalfeld saalfelds@janelia.hhmi.org, Philipp Hanslovsky

Field Summary

Fields

Modifier and Type	Field and Description
protected static int	iterations
protected static double	lambda1
protected static double	lambda2
protected LayerSet	layerset
protected static double	neighborWeight
protected static int	numCoefficients
protected static int	radius
protected static double	scale

Constructor Summary

Constructors

Constructor and Description
MatchIntensities()

Method Summary

Modifier and Type	Method and Description
boolean	applies(Object ob) Returns true if this plugin can be applied to an Object like @param ob.
protected static <T extends Model<T> & Affine1D<T>> HashMap<Patch,ArrayList<Tile<T>>>	generateCoefficientsTiles(Collection<Patch> patches, T template, int nCoefficients)
protected static void	identityConnect(Tile<?> t1, Tile<?> t2, double weight)
Object	invoke(Object... params) Run the plugin directly.
static void	main(String... args)
<M extends Model<M> & Affine1D<M>> void	run(List<Layer> layers, int radius, double scale, int numCoefficients, double lambda1, double lambda2, double neighborWeight, Rectangle roi)
boolean	setup(Object... params) Setup with optional parameters (may be null).

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

layerset

protected LayerSet layerset

numCoefficients

protected static int numCoefficients

lambda1

protected static double lambda1

lambda2

protected static double lambda2

neighborWeight

protected static double neighborWeight

radius

protected static int radius

iterations

protected static int iterations

scale

protected static double scale

Constructor Detail

MatchIntensities

public MatchIntensities()

Method Detail

setup

public boolean setup(Object... params)

Description copied from interface: TPlugIn

Setup with optional parameters (may be null). Returns true of the setup was successful or not interrupted (like by clicking cancel on a dialog).

Specified by:

setup in interface TPlugIn

generateCoefficientsTiles

protected static final <T extends Model<T> & Affine1D<T>> HashMap<Patch,ArrayList<Tile<T>>> generateCoefficientsTiles(Collection<Patch> patches,
                                                                                                                      T template,
                                                                                                                      int nCoefficients)

identityConnect

protected static final void identityConnect(Tile<?> t1,
                                            Tile<?> t2,
                                            double weight)

invoke

public Object invoke(Object... params)

Description copied from interface: TPlugIn

Run the plugin directly.

Specified by:

invoke in interface TPlugIn

applies

public boolean applies(Object ob)

Description copied from interface: TPlugIn

Returns true if this plugin can be applied to an Object like @param ob. This may or may not be a Displayable object.

Specified by:

applies in interface TPlugIn

run

public <M extends Model<M> & Affine1D<M>> void run(List<Layer> layers,
                                                   int radius,
                                                   double scale,
                                                   int numCoefficients,
                                                   double lambda1,
                                                   double lambda2,
                                                   double neighborWeight,
                                                   Rectangle roi)
                                            throws InterruptedException,
                                                   ExecutionException

Parameters:

layers -

radius -

scale -

numCoefficients -

lambda1 -

lambda2 -

neighborWeight -

roi -

Throws:

InterruptedException

ExecutionException

main

public static final void main(String... args)