mpi.fruitfly.general

Class ImageArrayConverter

java.lang.Object

mpi.fruitfly.general.ImageArrayConverter

public class ImageArrayConverter
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
static boolean	CUTOFF_VALUES
static int	DRAWTYPE_ERRORMAP
static int	DRAWTYPE_OVERLAP
static boolean	NORM_VALUES

Constructor Summary

Constructors

Constructor and Description
ImageArrayConverter()

Method Summary

Modifier and Type	Method and Description
static void	ArrayToByteProcessor(ij.process.ImageProcessor ip, float[][] pixels)
static void	ArrayToByteProcessor(ij.process.ImageProcessor ip, int[][] pixels)
static void	ArrayToFloatProcessor(ij.process.ImageProcessor ip, double[] pixels, int width, int height)
static void	ArrayToFloatProcessor(ij.process.ImageProcessor ip, float[] pixels, int width, int height)
static ij.ImagePlus	DoubleArrayToStack(double[] image, int width, int height, int nstacks, String name, float min, float max)
static FloatArray2D	drawTranslatedImages(FloatArray2D img1, FloatArray2D img2, Point shift, int drawType)
static void	FloatArrayToFloatProcessor(ij.process.ImageProcessor ip, FloatArray2D pixels)
static ij.ImagePlus	FloatArrayToImagePlus(FloatArray2D image, String name, float min, float max)
static ij.ImagePlus	FloatArrayToStack(FloatArray3D image, String name, float min, float max)
static double[]	ImageToDoubleArray1D(ij.process.ImageProcessor ip)
static double[]	ImageToDoubleArray1DZeroPadding(ij.process.ImageProcessor ip, int width, int height)
static FloatArray2D	ImageToFloatArray2D(ij.process.ImageProcessor ip)
static float[][]	ImageToFloatArray2DDeprecated(ij.process.ImageProcessor ip)
static FloatArray2D	ImageToFloatArray2DZeroPadding(ij.process.ImageProcessor ip, int width, int height)
static int[][]	ImageToIntArray(ij.process.ImageProcessor ip)
static void	normFloatArray(FloatArray img)
static void	normPixelValuesToByte(float[][][] pixels, boolean cutoff)
static void	normPixelValuesToByte(float[][] pixels, boolean cutoff)
static void	normPixelValuesToByte(int[][] pixels, boolean cutoff)
static double[]	StackToDoubleArray1D(ij.ImageStack stack)
static double[]	StackToDoubleArrayZeroPadding(ij.ImageStack stack, int wZP, int hZP, int dZP)
static FloatArray3D	StackToFloatArray(ij.ImageStack stack)
static FloatArray4D	StackToFloatArrayComplex(ij.ImageStack stack)
static FloatArray4D	StackToFloatArrayComplexZeroPadding(ij.ImageStack stack, int wZP, int hZP, int dZP)
static float[][][]	StackToFloatArrayDeprecated(ij.ImageStack stack)
static FloatArray3D	StackToFloatArrayZeroPadding(ij.ImageStack stack, int wZP, int hZP, int dZP)
static FloatArray2D	zeroPad(FloatArray2D ip, int width, int height)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

CUTOFF_VALUES

public static boolean CUTOFF_VALUES

NORM_VALUES

public static boolean NORM_VALUES

DRAWTYPE_OVERLAP

public static int DRAWTYPE_OVERLAP

DRAWTYPE_ERRORMAP

public static int DRAWTYPE_ERRORMAP

Constructor Detail

ImageArrayConverter

public ImageArrayConverter()

Method Detail

FloatArrayToImagePlus

public static ij.ImagePlus FloatArrayToImagePlus(FloatArray2D image,
                                                 String name,
                                                 float min,
                                                 float max)

FloatArrayToStack

public static ij.ImagePlus FloatArrayToStack(FloatArray3D image,
                                             String name,
                                             float min,
                                             float max)

DoubleArrayToStack

public static ij.ImagePlus DoubleArrayToStack(double[] image,
                                              int width,
                                              int height,
                                              int nstacks,
                                              String name,
                                              float min,
                                              float max)

StackToFloatArrayZeroPadding

public static FloatArray3D StackToFloatArrayZeroPadding(ij.ImageStack stack,
                                                        int wZP,
                                                        int hZP,
                                                        int dZP)

StackToFloatArrayComplexZeroPadding

public static FloatArray4D StackToFloatArrayComplexZeroPadding(ij.ImageStack stack,
                                                               int wZP,
                                                               int hZP,
                                                               int dZP)

StackToDoubleArrayZeroPadding

public static double[] StackToDoubleArrayZeroPadding(ij.ImageStack stack,
                                                     int wZP,
                                                     int hZP,
                                                     int dZP)

StackToDoubleArray1D

public static double[] StackToDoubleArray1D(ij.ImageStack stack)

StackToFloatArray

public static FloatArray3D StackToFloatArray(ij.ImageStack stack)

StackToFloatArrayDeprecated

public static float[][][] StackToFloatArrayDeprecated(ij.ImageStack stack)

StackToFloatArrayComplex

public static FloatArray4D StackToFloatArrayComplex(ij.ImageStack stack)

ImageToIntArray

public static int[][] ImageToIntArray(ij.process.ImageProcessor ip)

ImageToFloatArray2DDeprecated

public static float[][] ImageToFloatArray2DDeprecated(ij.process.ImageProcessor ip)

ImageToDoubleArray1D

public static double[] ImageToDoubleArray1D(ij.process.ImageProcessor ip)

ImageToFloatArray2D

public static FloatArray2D ImageToFloatArray2D(ij.process.ImageProcessor ip)

normFloatArray

public static void normFloatArray(FloatArray img)

drawTranslatedImages

public static FloatArray2D drawTranslatedImages(FloatArray2D img1,
                                                FloatArray2D img2,
                                                Point shift,
                                                int drawType)

zeroPad

public static FloatArray2D zeroPad(FloatArray2D ip,
                                   int width,
                                   int height)

ImageToFloatArray2DZeroPadding

public static FloatArray2D ImageToFloatArray2DZeroPadding(ij.process.ImageProcessor ip,
                                                          int width,
                                                          int height)

ImageToDoubleArray1DZeroPadding

public static double[] ImageToDoubleArray1DZeroPadding(ij.process.ImageProcessor ip,
                                                       int width,
                                                       int height)

ArrayToByteProcessor

public static void ArrayToByteProcessor(ij.process.ImageProcessor ip,
                                        int[][] pixels)

ArrayToByteProcessor

public static void ArrayToByteProcessor(ij.process.ImageProcessor ip,
                                        float[][] pixels)

ArrayToFloatProcessor

public static void ArrayToFloatProcessor(ij.process.ImageProcessor ip,
                                         double[] pixels,
                                         int width,
                                         int height)

ArrayToFloatProcessor

public static void ArrayToFloatProcessor(ij.process.ImageProcessor ip,
                                         float[] pixels,
                                         int width,
                                         int height)

FloatArrayToFloatProcessor

public static void FloatArrayToFloatProcessor(ij.process.ImageProcessor ip,
                                              FloatArray2D pixels)

normPixelValuesToByte

public static void normPixelValuesToByte(int[][] pixels,
                                         boolean cutoff)

normPixelValuesToByte

public static void normPixelValuesToByte(float[][] pixels,
                                         boolean cutoff)

normPixelValuesToByte

public static void normPixelValuesToByte(float[][][] pixels,
                                         boolean cutoff)