ini.trakem2.utils

Class ImgLibVolume<T extends RealType<T>>

java.lang.Object

ij3d.Volume

ini.trakem2.utils.ImgLibVolume<T>

public class ImgLibVolume<T extends RealType<T>>
extends Volume

This class encapsulates an mpicbg.imglib.Image object, for use in Marching Cubes.

Author:

Albert Cardona

Nested Class Summary

Nested classes/interfaces inherited from class ij3d.Volume

Volume.AverageByteLoader, Volume.ByteImage, Volume.ByteLoader, Volume.InputImage, Volume.IntImage, Volume.IntLoader, Volume.Loader, Volume.SaturatedIntLoader

Field Summary

Fields

Modifier and Type	Field and Description
protected int	dataType

Fields inherited from class ij3d.Volume

average, BYTE_DATA, channels, image, imp, INT_DATA, loader, maxCoord, minCoord, pd, ph, pw, saturatedVolumeRendering, xDim, yDim, zDim

Constructor Summary

Constructors

Constructor and Description
ImgLibVolume(Image<T> img, float[] origin)

Method Summary

Modifier and Type	Method and Description
int	getDataType()
Image<T>	getImage()
protected void	initLoader() Create the image cursor anew.
int	load(int x, int y, int z) Load the value at the specified position
void	set(int x, int y, int z, int v)
boolean	setAverage(boolean a) Does nothing.
void	setNoCheck(int x, int y, int z, int v)

Methods inherited from class ij3d.Volume

clear, getAlphaLUT, getAverage, getBlueLUT, getGreenLUT, getImagePlus, getRedLUT, initDataType, isAverage, isDefaultLUT, isSaturatedVolumeRendering, loadWithLUT, restore, setAlphaLUTFullyOpaque, setChannels, setImage, setLUTs, setSaturatedVolumeRendering, swap

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

dataType

protected int dataType

Constructor Detail

ImgLibVolume

public ImgLibVolume(Image<T> img,
                    float[] origin)
             throws Exception

Throws:

Exception

Method Detail

getImage

public Image<T> getImage()

initLoader

protected void initLoader()

Create the image cursor anew.

Overrides:

initLoader in class Volume

setAverage

public boolean setAverage(boolean a)

Does nothing.

Overrides:

setAverage in class Volume

setNoCheck

public void setNoCheck(int x,
                       int y,
                       int z,
                       int v)

Overrides:

setNoCheck in class Volume

set

public void set(int x,
                int y,
                int z,
                int v)

Overrides:

set in class Volume

load

public int load(int x,
                int y,
                int z)

Load the value at the specified position

Overrides:

load in class Volume

Parameters:

x -

y -

z -

Returns:

value. Casted to int if it was a byte value before.

getDataType

public int getDataType()

Overrides:

getDataType in class Volume